Publications of Nicholas Ayache

1. Nicholas Ayache, Alain Damasio, Yuval Noah Harari, Cathy O'Neil, and Nicolas Revel. Nouvelle enquête sur l'intelligence artificielle, Champs Actuel. Flammarion, June 2020. [bibtex-entry]



2. Nicholas Ayache. Des images médicales au patient numérique, Leçons inaugurales du Collège de France. Collège de France / Fayard, March 2015. [bibtex-entry]



3. Nikos Paragios, Jim Duncan, and Nicholas Ayache. Handbook of Biomedical Imaging: Methodologies and Clinical Research. Springer, 2015. [bibtex-entry]



4. Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors. Functional Imaging and Modeling of the Heart - FIMH 2009, volume 5528 of LNCS, Nice, France, June 2009. Springer. Note: 537 pages. [bibtex-entry]



5. Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007 - Part I, volume 4791 of LNCS, Brisbane, Australia, October 2007. Springer. Note: 1001 pages. [bibtex-entry]



6. Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007 - Part II, volume 4792 of LNCS, Brisbane, Australia, October 2007. Springer. Note: 977 pages. [bibtex-entry]



7. N. Ayache, editor. Computational Models for the Human Body, Handbook of Numerical Analysis (Ph. Ciarlet series editor). Elsevier, 2004. Note: 670 pages. [bibtex-entry]



8. N. Ayache and H. Delingette, editors. Proceedings of the International Symposium on Surgery Simulation and Soft Tissue Modeling, volume 2673 of Lecture Notes in Computer Science, Juan-les-Pins, France, June 2003. Springer. [bibtex-entry]



9. N. Ayache, editor. First international conference on computer vision, virtual reality and robotics in medicine, CVRMed'95, volume 905 of Lecture Notes in Computer Science, Nice, France, April 1995. Springer. [bibtex-entry]



10. N. Ayache. Artificial Vision for Mobile robots - Stereo-vision and Multisensor Perception. MIT-Press, 1991. Note: 342 pages. [bibtex-entry]



11. Nicholas Ayache. Vision Stéréoscopique et Perception Multisensorielle: Application à la robotique mobile. Inter-Editions (MASSON), 1989. Note: 314 pages, in French. [bibtex-entry]

1. Paul Tourniaire, Marius Ilie, Julien Mazières, Anna Vigier, François Ghiringhelli, Nicolas Piton, Jean-Christophe Sabourin, Frédéric Bibeau, Paul Hofman, Nicholas Ayache, and Hervé Delingette. WhARIO: whole-slide-image-based survival analysis for patients treated with immunotherapy. Journal of Medical Imaging, 11(03), May 2024. Keyword(s): Lung cancer LC, Whole slide image classification. [bibtex-entry]



2. Nikos Chrisochoides, Yixun Liu, Fotis Drakopoulos, Andriy Kot, Panos Foteinos, Christos Tsolakis, Emmanuel Billias, Olivier Clatz, Nicholas Ayache, Andrey Fedorov, Alex Golby, Peter Black, and Ron Kikinis. Comparison of physics-based deformable registration methods for image-guided neurosurgery. Frontiers in Digital Health, 5, December 2023. Keyword(s): Image-guided neurosurgery, physics-based deformable registration, finite element methods (FEM), high performance computing, mesh generation. [bibtex-entry]



3. Hind Dadoun, Hervé Delingette, Anne-Laure Rousseau, Eric de Kerviler, and Nicholas Ayache. Deep Clustering for Abdominal Organ Classification in US imaging. Journal of Medical Imaging, 10(3):034502, 2023. Keyword(s): ultrasound imaging, representation learning, deep clustering, semi-supervised learning. [bibtex-entry]



4. Dimitri Hamzaoui, Sarah Montagne, Raphaële Renard-Penna, Nicholas Ayache, and Hervé Delingette. Morphologically-Aware Consensus Computation via Heuristics-based IterATive Optimization (MACCHIatO). Journal of Machine Learning for Biomedical Imaging, 2(UNSURE 2022 Special Issue):361-389, September 2023. Keyword(s): Consensus, Distance, Heuristic, Optimization, STAPLE. [bibtex-entry]



5. Sébastien Molière, Dimitri Hamzaoui, Anna Luzurier, Benjamin Granger, Sarah Montagne, Alexandre Allera, Malek Ezziane, Raphaële Quint, Mehdi Kalai, Nicholas Ayache, Hervé Delingette, and Raphaële Renard-Penna. Reference standard for the evaluation of automatic segmentation algorithms: Quantification of inter observer variability of manual delineation of prostate contour on MRI. Diagnostic and Interventional Imaging, August 2023. Keyword(s): Artificial intelligence Inter-reader variability Magnetic resonance imaging Prostate Segmentation. [bibtex-entry]



6. Théodore Soulier, Olivier Colliot, Nicholas Ayache, and Benjamin Rohaut. How will tomorrow's algorithms fuse multimodal data? The example of the neuroprognosis in Intensive Care. Anaesthesia Critical Care & Pain Medicine, pp 101301, September 2023. Keyword(s): Disorders of Consciousness, Neurological Prognosis, Multimodal Data, Artificial Intelligence, Disorders of Consciousness Neurological Prognosis Multimodal Data Artificial Intelligence. [bibtex-entry]



7. Paul Tourniaire, Marius Ilie, Paul Hofman, Nicholas Ayache, and Hervé Delingette. MS-CLAM: Mixed Supervision for the classification and localization of tumors in Whole Slide Images. Medical Image Analysis, 85:102763, 2023. Keyword(s): Digital Pathology, Mixed Supervision, Deep Learning, Camelyon16, DigestPath2019. [bibtex-entry]



8. Clément Abi Nader, Federica Ribaldi, Giovanni B Frisoni, Valentina Garibotto, Philippe Robert, Nicholas Ayache, and Marco Lorenzi. SimulAD: A dynamical model for personalized simulation and disease staging in Alzheimer's disease. Neurobiology of Aging, 113:73-83, May 2022. Keyword(s): Alzheimer's disease, Disease progression models, Clinical trials, Biomarkers. [bibtex-entry]



9. Nicholas Ayache. La fée IA au chevet des malades. Pour la Science. Dossier, (hors série 115):18-23, May 2022. Note: The article is available at the following address: https://www.pourlascience.fr/sd/medecine/la-fee-ia-au-chevet-des-malades-23684.php. [bibtex-entry]



10. Hind Dadoun, Anne-Laure Rousseau, Eric de Kerviler, Jean Michel Correas, Anne-Marie Tissier, Fanny Joujou, Sylvain Bodard, Kemel Khezzane, Constance de Margerie-Mellon, Hervé Delingette, and Nicholas Ayache. Detection, Localization, and Characterization of Focal Liver Lesions in Abdominal US with Deep Learning. Radiology: Artificial Intelligence, 4(3), 2022. [bibtex-entry]



11. Dimitri Hamzaoui, Sarah Montagne, Benjamin Granger, Alexandre Allera, Malek Ezziane, Anna Luzurier, Raphaëlle Quint, Mehdi Kalai, Nicholas Ayache, Hervé Delingette, and Raphaële Renard-Penna. Correction to: Prostate Volume Prediction on MRI: Tools, Accuracy and Variability. European Radiology, 32(7):5035-5035, 2022. Note: Correction about the name of the author Raphaële Renard-Penna. [bibtex-entry]



12. Dimitri Hamzaoui, Sarah Montagne, Benjamin Granger, Alexandre Allera, Malek Ezziane, Anna Luzurier, Raphaële Quint, Mehdi Kalai, Nicholas Ayache, Hervé Delingette, and Raphaele Renard-Penna. Prostate volume prediction on MRI: tools, accuracy and variability. European Radiology, February 2022. Note: The original publication is available at www.springerlink.com: https://link.springer.com/article/10.1007/s00330-022-08554-4. Keyword(s): Prostate, Magnetic Resonance Imaging, Volume, PSA density, Segmentation. [bibtex-entry]



13. Dimitri Hamzaoui, Sarah Montagne, Raphaele Renard-Penna, Nicholas Ayache, and Hervé Delingette. Automatic Zonal Segmentation of the Prostate from 2D and 3D T2-weighted MRI and Evaluation for Clinical Use. Journal of Medical Imaging, 9(2):024001, March 2022. Keyword(s): Prostate, Segmentation, Deep Learning, Lesion, Magnetic Resonance Imaging, Inter-rater Variability. [bibtex-entry]



14. Marius Ilie, Jonathan Benzaquen, Paul Tourniaire, Simon Heeke, Nicholas Ayache, Hervé Delingette, Elodie Long-Mira, Sandra Lassalle, Marame Hamila, Julien Fayada, Josiane Otto, Charlotte Cohen, Abel Gomez Caro, Jean Philippe Berthet, Charles Hugo Marquette, Véronique Hofman, Christophe Bontoux, and Paul Hofman. Deep learning facilitates distinguishing histologic subtypes of pulmonary neuroendocrine tumors on digital whole-slide images. Cancers, 14(7):1740, March 2022. Keyword(s): lung, neuroendocrine carcinoma, deep learning, CNN, HALO-AI. [bibtex-entry]



15. Fabien Lareyre, Christian-Alexander Behrendt, Arindam Chaudhuri, Nicholas Ayache, Juliette Raffort, and Hervé Delingette. Big Data and Artificial Intelligence in Vascular Surgery: Time for Multidisciplinary Cross-Border Collaboration. Angiology, 73(8):697-700, September 2022. [bibtex-entry]



16. Marius Schmidt- Mengin, Théodore Soulier, Mariem Hamzaoui, Arya Yazdan-Panah, Benedetta Bodini, Nicholas Ayache, Bruno Stankoff, and Olivier Colliot. Online hard example mining vs. fixed oversampling strategy for segmentation of new multiple sclerosis lesions from longitudinal FLAIR MRI. Frontiers in Neuroscience, 16:100405, 2022. Keyword(s): New lesions segmentation, Deep learning, Hard example mining, Multiple sclerosis, MRI. [bibtex-entry]



17. Carine Wu, Sarah Montagne, Dimitri Hamzaoui, Nicholas Ayache, Hervé Delingette, and Raphaële Renard-Penna. Automatic segmentation of prostate zonal anatomy on MRI: a systematic review of the literature. Insights into Imaging, 13(1):202, December 2022. Keyword(s): Artificial intelligence, Deep learning, Magnetic resonance imaging, Prostate cancer. [bibtex-entry]



18. Clément Abi Nader, Nicholas Ayache, Giovanni B Frisoni, Philippe Robert, and Marco Lorenzi. Simulating the outcome of amyloid treatments in Alzheimer's Disease from multi-modal imaging and clinical data. Brain Communications, February 2021. Keyword(s): Alzheimer's Disease, Clinical trials, Disease progression, Amyloid hypothesis, Mental State Examination, FAQ = Functional Assessment Questionnaire, RAVLT = Rey Auditory Verbal Learning Test, CDRSB = Clinical Dementia Rating Scale Sum of Boxes. [bibtex-entry]



19. Julian Krebs, Hervé Delingette, Nicholas Ayache, and Tommaso Mansi. Learning a Generative Motion Model from Image Sequences based on a Latent Motion Matrix. IEEE Transactions on Medical Imaging, February 2021. Keyword(s): motion model, deformable registration, conditional variational autoencoder, gaussian process, latent variable model, motion interpolation, motion simulation, tracking. [bibtex-entry]



20. Sarah Montagne, Dimitri Hamzaoui, Alexandre Allera, Malek Ezziane, Anna Luzurier, Raphaële Quint, Mehdi Kalai, Nicholas Ayache, Hervé Delingette, and Raphaele Renard Penna. Challenge of prostate MRI segmentation on T2-weighted images: inter-observer variability and impact of prostate morphology. Insights into Imaging, 12(1), June 2021. Keyword(s): Prostate, MRI, Segmentation, Zones, Atlas. [bibtex-entry]



21. Maxime Sermesant, Hervé Delingette, Hubert Cochet, Pierre Jaïs, and Nicholas Ayache. Applications of artificial intelligence in cardiovascular imaging. Nature Reviews Cardiology, 18:600-609, March 2021. Keyword(s): Cardiology, Machine learning, Medical imaging. [bibtex-entry]



22. Kevin Zhou, Hoang Ngan Le, Khoa Luu, Hien van Nguyen, and Nicholas Ayache. Deep reinforcement learning in medical imaging: A literature review. Medical Image Analysis, 73:102193, October 2021. [bibtex-entry]



23. Nicholas Ayache. Foreword. In Jean-François Uhl, Joaquim Jorge, Daniel Simoes Lopes, and Pedro F Campos, editors, Digital Anatomy - Applications of Virtual, Mixed and Augmented Reality, Human--Computer Interaction Series. Springer Nature, May 2021. [bibtex-entry]



24. James S Duncan, Michel F Insana, and Nicholas Ayache. Biomedical Imaging and Analysis In the Age of Big Data and Deep Learning. Proceedings of the IEEE, 14:3-10, January 2020. [bibtex-entry]



25. Pawel Mlynarski, Hervé Delingette, Hamza A Alghamdi, Pierre-Yves Bondiau, and Nicholas Ayache. Anatomically consistent CNN-based segmentation of organs-at-risk in cranial radiotherapy. Journal of Medical Imaging, 7(1):1-21, February 2020. Keyword(s): segmentation, organs at risk, Convolutional Neural Networks, radiotherapy, MRI. [bibtex-entry]



26. Fanny Orlhac, Augustin Lecler, Julien Savatovski, Jessica Goya-Outi, Christophe Nioche, Frédérique Charbonneau, Nicholas Ayache, Frédérique Frouin, Loïc Duron, and Irène Buvat. How can we combat multicenter variability in MR radiomics? Validation of a correction procedure. European Radiology, 2020. [bibtex-entry]



27. Raphaël Sivera, Nicolas Capet, Valeria Manera, Roxane Fabre, Marco Lorenzi, Hervé Delingette, Xavier Pennec, Nicholas Ayache, and Philippe Robert. Voxel-based assessments of treatment effects on longitudinal brain changes in the Multidomain Alzheimer Preventive Trial cohort. Neurobiology of Aging, 94:50-59, October 2020. Keyword(s): Multidomain intervention, Clinical trial, Subjective memory complaint, Deformation-based morphometry. [bibtex-entry]



28. Wen Wei, Emilie Poirion, Benedetta Bodini, Matteo Tonietto, Stanley Durrleman, Olivier Colliot, Bruno Stankoff, and Nicholas Ayache. Predicting PET-derived Myelin Content from Multisequence MRI for Individual Longitudinal Analysis in Multiple Sclerosis. NeuroImage, 223C(117308), December 2020. Keyword(s): Conditional GANs, Attention Mechanism, PET Imaging, Multisequence MRI, Demyelination and Remyelination, Deep Learning, Multiple Sclerosis. [bibtex-entry]



29. Qiao Zheng, Hervé Delingette, Kenneth Fung, Steffen E Petersen, and Nicholas Ayache. Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs. Frontiers in Cardiovascular Medicine, 7:164, November 2020. Keyword(s): Cluster analysis, Gaussian mixture model, Cine MRI, Cardiac pathology, Feature extraction, UK Biobank, Cardiac motion. [bibtex-entry]



30. Nicholas Ayache. Medical Imaging in the Age of Artificial Intelligence. In Nordlinger B., Villani C., and Rus D., editors, Healthcare and Artificial Intelligence, pages 89-91. Springer International Publishing, March 2020. [bibtex-entry]



31. Clement Abi Nader, Nicholas Ayache, Philippe Robert, and Marco Lorenzi. Monotonic Gaussian Process for Spatio-Temporal Disease Progression Modeling in Brain Imaging Data. NeuroImage, 2019. Keyword(s): Stochastic variational inference, Clinical trials, Bayesian modeling, Alzheimer's disease, Disease progression modeling, Gaussian Process. [bibtex-entry]



32. Luigi Antelmi, Nicholas Ayache, Philippe Robert, and Marco Lorenzi. Sparse Multi-Channel Variational Autoencoder for the Joint Analysis of Heterogeneous Data. Proceedings of Machine Learning Research, (97):302-311, 2019. [bibtex-entry]



33. Nicholas Ayache and Sara Colantonio. The Digital Health Revolution - Introduction to the Special Theme. ERCIM News, (118):4-5, July 2019. [bibtex-entry]



34. Thomas Demarcy, Isabelle Pélisson, Dan Gnansia, Hervé Delingette, Nicholas Ayache, Charles Raffaelli, Clair Vandersteen, and Nicolas Guevara. Un modèle de reconstruction tridimensionnelle de la cochlée au service de l'implantation cochléaire. Cahiers de l'audition, 32(4):36-40, July 2019. [bibtex-entry]



35. Paul Hofman, Nicholas Ayache, Pascal Barbry, Michel Barlaud, Audrey Bel, Philippe Blancou, Frédéric Checler, Sylvie Chevillard, Gael Cristofari, Mathilde Demory, Vincent Esnault, Claire Falandry, Eric Gilson, Olivier Guerin, Nicolas Glaichenhaus, Joël Guigay, Marius I. Ilie, Bernard Mari, Charles-Hugo Marquette, Véronique Paquis-Flucklinger, Frédéric Prate, Pierre Saintigny, Barbara Seitz-Polsky, Taycir Skhiri, Ellen van Obberghen-Schilling, Emmanuel Van Obberghen, and Laurent Yvan-Charvet. The OncoAge Consortium: Linking Aging and Oncology from Bench to Bedside and Back Again. Cancers, 11(2):1-11, February 2019. Keyword(s): education, elderly, optimization, research, well-being, aging, cancer. [bibtex-entry]



36. Julian Krebs, Hervé Delingette, Boris Mailhé, Nicholas Ayache, and Tommaso Mansi. Learning a Probabilistic Model for Diffeomorphic Registration. IEEE Transactions on Medical Imaging, pp 2165-2176, February 2019. Keyword(s): deformable registration, deformation transport, latent variable model, probabilistic encoding, conditional variational autoencoder, deep learning. [bibtex-entry]



37. Pawel Mlynarski, Hervé Delingette, Antonio Criminisi, and Nicholas Ayache. 3D Convolutional Neural Networks for Tumor Segmentation using Long-range 2D Context. Computerized Medical Imaging and Graphics, 73:60-72, February 2019. Keyword(s): Brain tumor, Multisequence MRI, Segmentation, 3D Convolutional Neural Networks, Ensembles of models. [bibtex-entry]



38. Pawel Mlynarski, Hervé Delingette, Antonio Criminisi, and Nicholas Ayache. Deep Learning with Mixed Supervision for Brain Tumor Segmentation. Journal of Medical Imaging, July 2019. Keyword(s): Semi-supervised learning, tumor, segmentation, Convolutional Neural Networks, Convolutional N..., Semi-supervised..., MRI. [bibtex-entry]



39. Roch Molléro, Xavier Pennec, Hervé Delingette, Nicholas Ayache, and Maxime Sermesant. Population-based priors in cardiac model personalisation for consistent parameter estimation in heterogeneous databases. International Journal for Numerical Methods in Biomedical Engineering, 35(2):e3158, February 2019. Keyword(s): Cardiac Electromechanical Modeling, Parameter Estimation, Personalised modeling, Parameter Selection. [bibtex-entry]



40. Fanny Orlhac, Charles Bouveyron, and Nicholas Ayache. Radiomics: How to Make Medical Images Speak?. ERCIM News, (118):7-8, July 2019. [bibtex-entry]



41. Fanny Orlhac, Frédérique Frouin, Christophe Nioche, Nicholas Ayache, and Irène Buvat. Validation of A Method to Compensate Multicenter Effects Affecting CT Radiomics. Radiology, 291(1):53-59, April 2019. [bibtex-entry]



42. Raphaël Sivera, Hervé Delingette, Marco Lorenzi, Xavier Pennec, and Nicholas Ayache. A model of brain morphological changes related to aging and Alzheimer's disease from cross-sectional assessments. NeuroImage, 198:255-270, September 2019. Keyword(s): Imaging biomarkers, Aging, Spatio-temporal model, Brain morphology, Deformations, Alzheimer's disease. [bibtex-entry]



43. Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Nicholas Ayache, Bruno Stankoff, and Olivier Colliot. Predicting PET-derived Demyelination from Multimodal MRI using Sketcher-Refiner Adversarial Training for Multiple Sclerosis. Medical Image Analysis, 58(101546), December 2019. Keyword(s): Multimodal MRI, PET Imaging, Adversarial Training, Multiple Sclerosis. [bibtex-entry]



44. Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Olivier Colliot, Bruno Stankoff, and Nicholas Ayache. Fluid-attenuated inversion recovery MRI synthesis from multisequence MRI using three-dimensional fully convolutional networks for multiple sclerosis. Journal of Medical Imaging, 6(01), February 2019. Keyword(s): MR Images, FLAIR Synthesis, 3D Fully Convolutional Networks, Multiple Sclerosis, Deep Learning. [bibtex-entry]



45. Qiao Zheng, Hervé Delingette, and Nicholas Ayache. Explainable cardiac pathology classification on cine MRI with motion characterization by semi-supervised learning of apparent flow. Medical Image Analysis, 56:80-95, 2019. Keyword(s): Deep learn- ing, Cine MRI, Classifi-cation, Motion, Semi-supervised learning, Deep learn-ing, Cardiac pathology, Neural network, Apparent flow, Classifi- cation. [bibtex-entry]



46. Rocio Cabrera Lozoya, Benjamin Berte, Hubert Cochet, Pierre Jaïs, Nicholas Ayache, and Maxime Sermesant. Model-based Feature Augmentation for Cardiac Ablation Target Learning from Images. IEEE Transactions on Biomedical Engineering, pp 1, March 2018. Keyword(s): intracardiac electrogram modelling, cardiac elec-, Index Terms-radio-frequency ablation planning, trophysiology modelling, electroanatomical mapping. [bibtex-entry]



47. Nicolas Duchateau, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. Model-based generation of large databases of cardiac images: synthesis of pathological cine MR sequences from real healthy cases. IEEE Transactions on Medical Imaging, 37:755-766, 2018. Keyword(s): validation, magnetic resonance., biomechanical modeling, Image synthesis and simulation, myocardial infarct, large database for machine learning. [bibtex-entry]



48. Sophie Giffard-Roisin, Hervé Delingette, Thomas Jackson, Jessica Webb, Lauren Fovargue, Jack Lee, Christopher A Rinaldi, Reza Razavi, Nicholas Ayache, and Maxime Sermesant. Transfer Learning from Simulations on a Reference Anatomy for ECGI in Personalised Cardiac Resynchronization Therapy. IEEE Transactions on Biomedical Engineering, 20, 2018. Keyword(s): Cardiac Electrophysiology, Inverse Problem of ECG, Personalisation, ECG Imaging, Index Terms-Cardiac Electrophysiology, In- verse Problem of ECG. [bibtex-entry]



49. Pietro Gori, Olivier Colliot, Linda Marrakchi Kacem, Yulia Worbe, Alexandre Routier, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, and Stanley Durrleman. Double diffeomorphism: combining morphometry and structural connectivity analysis. IEEE Transactions on Medical Imaging, 37(9):2033-2043, September 2018. Keyword(s): Neural circuits, Structural connectivity, Diffeomorphisms, Multi-object, Atlas, Shape, Morphometry, Complex, Tourette. [bibtex-entry]



50. Fanny Orlhac, Frédérique Frouin, Christophe Nioche, Nicholas Ayache, and Irene Buvat. Validation of a method to compensate multicenter effects affecting CT radiomic features. Radiology, 2018. [bibtex-entry]



51. F Orlhac, P.-A Mattei, C. Bouveyron, and N Ayache. Class-specific Variable Selection in High-Dimensional Discriminant Analysis through Bayesian Sparsity. Journal of Chemometrics, pp e3097, November 2018. [bibtex-entry]



52. Qiao Zheng, Hervé Delingette, Nicolas Duchateau, and Nicholas Ayache. 3D Consistent & Robust Segmentation of Cardiac Images by Deep Learning with Spatial Propagation. IEEE Transactions on Medical Imaging, 37:2137-2148, April 2018. Keyword(s): deep learning, spatial propagation, Cardiac segmentation, 3D consistency, neural network. [bibtex-entry]



53. Nicholas Ayache. L'imagerie médicale à l'heure de l'intelligence artificielle. In Cédric Villani and Bernard Nordlinger, editors, Santé et intelligence artificielle, pages 151-154. CNRS Editions, October 2018. [bibtex-entry]



54. Thomas Demarcy, Clair Vandersteen, Nicolas Guevara, Charles Raffaelli, Dan Gnansia, Nicholas Ayache, and Hervé Delingette. Automated analysis of human cochlea shape variability from segmented $\mu$CT images. Computerized Medical Imaging and Graphics, 59(July 2017):1 - 12, 2017. Keyword(s): cochlear implant, human cochlea, anatomy, shape variability, modiolar axis. [bibtex-entry]



55. Sophie Giffard-Roisin, Thomas Jackson, Lauren Fovargue, Jack Lee, Hervé Delingette, Reza Razavi, Nicholas Ayache, and Maxime Sermesant. Non-Invasive Personalisation of a Cardiac Electrophysiology Model from Body Surface Potential Mapping. IEEE Transactions on Biomedical Engineering, 64(9):2206 - 2218, September 2017. Note: Selected for the TBME highlights, sept. 2017rlhttps://tbme.embs.org/2017/08/24/non-invasive-personalisation-cardiac-electrophysiology-model-body-surface-potential-mapping/. Keyword(s): ECG Imaging, Parameter estimation, In- verse Problem of ECG, Cardiac Electrophysiology, Personalisation. [bibtex-entry]



56. Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, and Stanley Durrleman. A Bayesian Framework for Joint Morphometry of Surface and Curve meshes in Multi-Object Complexes. Medical Image Analysis, 35:458-474, January 2017. Keyword(s): complex, fiber bundle, morphometry, shape, Bayesian, varifolds, atlas, multi - object. [bibtex-entry]



57. Bishesh Khanal, Nicholas Ayache, and Xavier Pennec. Simulating Longitudinal Brain MRIs with known Volume Changes and Realistic Variations in Image Intensity. Frontiers in Neuroscience, 11(Article 132):18, February 2017. Keyword(s): simulated database, biomechanical simulation, Neurodegeneration, biophysical modelling, synthetic images, synthetic. [bibtex-entry]



58. Loïc Le Folgoc, Hervé Delingette, Antonio Criminisi, and Nicholas Ayache. Sparse Bayesian registration of medical images for self-tuning of parameters and spatially adaptive parametrization of displacements. Medical Image Analysis, 36:79 - 97, February 2017. Keyword(s): Cardiac Imaging, Automatic Relevance Determination, Bayesian modelling, Sparse, Registration. [bibtex-entry]



59. Roch Molléro, Xavier Pennec, Hervé Delingette, Alan Garny, Nicholas Ayache, and Maxime Sermesant. Multifidelity-CMA: a multifidelity approach for efficient personalisation of 3D cardiac electromechanical models. Biomechanics and Modeling in Mechanobiology, pp 1-16, September 2017. Keyword(s): Finite Element Mechanical modeling, Parameter Estimation, Reduced Model, Cardiac Electromechanical Modeling, Multi-fidelity Modeling. [bibtex-entry]



60. Walther Schulze, Zhong Chen, Jatin Relan, Danila Potyagaylo, Martin W. Krueger, Rashed Karim, Manav Sohal, Anoop Shetty, Yingliang Ma, Nicholas Ayache, Maxime Sermesant, Hervé Delingette, Julian Bostock, Reza Razavi, Kawal S. Rhode, and Christopher A. Rinaldi. ECG imaging of ventricular tachycardia: evaluation against simultaneous non-contact mapping and CMR-derived grey zone. Medical and Biological Engineering and Computing, 55(6):979 - 990, June 2017. Keyword(s): Clinical validation, Non-contact mapping, ECG imaging, Ventricular tachycardia, Inverse problem of ECG. [bibtex-entry]



61. Chloé Audigier, Tommaso Mansi, Hervé Delingette, Saikiran Rapaka, Tiziano Passerini, Viorel Mihalef, Marie-Pierre Jolly, Raoul Pop, Michele Diana, Luc Soler, Ali Kamen, Dorin Comaniciu, and Nicholas Ayache. Comprehensive Pre-Clinical Evaluation of a Multi-physics Model of Liver Tumor Radiofrequency Ablation. International Journal of Computer Assisted Radiology and Surgery, December 2016. [bibtex-entry]



62. Nicholas Ayache. Medical Imaging Informatics: Towards a Personalized Computational Patient. IMIA Yearbook of Medical Informatics, 25(Suppl. 1):S8-S9, 2016. [bibtex-entry]



63. Nicholas Ayache and James Duncan. 20th anniversary of the medical image analysis journal (MedIA). Medical Image Analysis, 33:1-3, October 2016. [bibtex-entry]



64. Rocìo Cabrera-Lozoya, Benjamin Berte, Hubert Cochet, Pierre Jaïs, Nicholas Ayache, and Maxime Sermesant. Image-based Biophysical Simulation of Intracardiac Abnormal Ventricular Electrograms. IEEE Transactions on Biomedical Engineering, PP(99), 2016. Keyword(s): electroanatomical mapping, intracar-diac electrogram modelling, radiofrequency ablation planning, cardiac electrophysiology modelling. [bibtex-entry]



65. Zhong Chen, Rocìo Cabrera-Lozoya, Jatin Relan, Manav Sohal, Anoop Shetty, Rashed Karim, Hervé Delingette, Jaswinder Gill, Kawal Rhode, Nicholas Ayache, Peter Taggart, Christopher Aldo Rinaldi, Maxime Sermesant, and Reza Razavi. Biophysical modelling predicts ventricular tachycardia inducibility and circuit morphology: A combined clinical validation and computer modelling approach. Journal of Cardiovascular Electrophysiology, 27(7):851-860, 2016. Keyword(s): cardiac magnetic resonance imaging, conductivity, APD restitution, computer modelling, Ventricular tachycardia. [bibtex-entry]



66. Nicolas Cordier, Hervé Delingette, Matthieu Lê, and Nicholas Ayache. Extended Modality Propagation: Image Synthesis of Pathological Cases. IEEE Transactions on Medical Imaging, PP(99), July 2016. Keyword(s): patch-based, multi-atlas, glioma, generative model, medical image simulation, modality synthesis. [bibtex-entry]



67. Dan Gnansia, Thomas Demarcy, Clair Vandersteen, Charles Raffaelli, Nicolas Guevara, Hervé Delingette, and Nicholas Ayache. Optimal electrode diameter in relation to volume of the cochlea. European Annals of Otorhinolaryngology, Head and Neck Diseases, 133, Supplement 1:S66-S67, June 2016. Keyword(s): Cochlear implant, Electrode-array, Hearing preservation, Soft surgery, Electrode-array design, Image processing, Computed tomography, Inner ear, Anatomy. [bibtex-entry]



68. Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Fabrizio de Vico Fallani, Mario Chavez, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, and Stanley Durrleman. Parsimonious Approximation of Streamline Trajectories in White Matter Fiber Bundles. IEEE Transactions on Medical Imaging, PP(99), 2016. Keyword(s): Index Terms-Diffusion weighted imaging, Brain, Connectivity analysis, Dimensionality reduction, Registration, Tractography, Visualization. [bibtex-entry]



69. Mehdi Hadj-Hamou, Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. Longitudinal Analysis of Image Time Series with Diffeomorphic Deformations: A Computational Framework Based on Stationary Velocity Fields. Frontiers in Neuroscience, 10(236):18, June 2016. Keyword(s): non-linear registration, deformation-based morphometry, longitudinal study, diffeomorphism parametrized by stationary velocity fields, statistical analysis, reproducible research. [bibtex-entry]



70. Bishesh Khanal, Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. A biophysical model of brain deformation to simulate and analyze longitudinal MRIs of patients with Alzheimer's disease. NeuroImage, 134:35-52, July 2016. Keyword(s): longitudinal modeling, simulation of atrophy, longitudinal MRIs simulation, biophysical model, Alzheimer's disease. [bibtex-entry]



71. Loïc Le Folgoc, Hervé Delingette, Antonio Criminisi, and Nicholas Ayache. Quantifying Registration Uncertainty with Sparse Bayesian Modelling. IEEE Transactions on Medical Imaging, PP(99), December 2016. Keyword(s): MCMC, Uncertainty Quantification, Registration, Sparse Bayesian Learning, Reversible Jump, Automatic Relevance Determination. [bibtex-entry]



72. Matthieu Lê, Hervé Delingette, Jayashree Kalpathy-Cramer, Elizabeth R Gerstner, Tracy Batchelor, Jan Unkelbach, and Nicholas Ayache. MRI Based Bayesian Personalization of a Tumor Growth Model. IEEE Transactions on Medical Imaging, 35(10):2329-2339, April 2016. Keyword(s): bayesian, personalization, Index Terms-tumor growth, glioblastoma, reaction-diffusion, LBM, Monte Carlo. [bibtex-entry]



73. Matthieu Lê, Hervé Delingette, Jayashree Kalpathy-Cramer, Elizabeth R Gerstner, Tracy Batchelor, Jan Unkelbach, and Nicholas Ayache. Personalized Radiotherapy Planning Based on a Computational Tumor Growth Model. IEEE Transactions on Medical Imaging, pp 11, 2016. Keyword(s): Index Terms-Radiotherapy planning, computational tu-, mor growth model, personalization, uncertainty, segmentation, glioblastoma. [bibtex-entry]



74. Matthieu Lê, Jan Unkelbach, Nicholas Ayache, and Hervé Delingette. Sampling Image Segmentations for Uncertainty Quantification. Medical Image Analysis, 34:42-51, December 2016. Note: Accepted for publication to the journal Elsevier Medical Image Analysis. Keyword(s): Gaussian process, brain tumor, uncertainty, radiotherapy planning, Segmentation. [bibtex-entry]



75. Anant S. Vemuri, Stéphane Nicolau, Adrien Sportes, Jacques Marescaux, Luc Soler, and Nicholas Ayache. Inter-Operative Biopsy Site Relocalization in Endoluminal Surgery. IEEE Transactions on Biomedical Engineering, 63(9):1862-1873, September 2016. Keyword(s): video synchronization, Computer assisted intervention, gastro-intestinal (GI) endoscopy, biopsy relocalization, Barrett's Oesophagus, electromagnetic tracking. [bibtex-entry]



76. A Amelot, E Stretton, Hervé Delingette, Nicholas Ayache, S Froelich, and E Mandonnet. Expert-validated CSF segmentation of MNI atlas enhances accuracy of virtual glioma growth patterns. Journal of Neuro-Oncology, 121(2):381-387, January 2015. [bibtex-entry]



77. Chloé Audigier, Tommaso Mansi, Hervé Delingette, Saikiran Rapaka, Viorel Mihalef, Daniel Carnegie, Emad Boctor, Michael Choti, Ali Kamen, Nicholas Ayache, and Dorin Comaniciu. Efficient Lattice Boltzmann Solver for Patient-Specific Radiofrequency Ablation of Hepatic Tumors. IEEE Transactions on Medical Imaging, 34(issue 7):p 1576-1589, 2015. Keyword(s): Radio Frequency ablation, Patient-Specific Simulation, Lattice Boltzmann Method, Heat Transfer, Computational Fluid Dynamics, Therapy Planning. [bibtex-entry]



78. Nicolas Cordier, Hervé Delingette, and Nicholas Ayache. A patch-based approach for the segmentation of pathologies: Application to glioma labelling. IEEE Transactions on Medical Imaging, 35(4):11, December 2015. Keyword(s): patch-based, multi-atlas, glioma, segmentation. [bibtex-entry]



79. Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. Regional flux analysis for discovering and quantifying anatomical changes: An application to the brain morphometry in Alzheimer's disease. NeuroImage, 115:224-234, July 2015. [bibtex-entry]



80. Marco Lorenzi, Xavier Pennec, Giovanni B. Frisoni, and Nicholas Ayache. Disentangling normal aging from Alzheimer's disease in structural magnetic resonance images. Neurobiology of Aging, 36:S42-S52, January 2015. [bibtex-entry]



81. Jan Margeta, Antonio Criminisi, Rocio Cabrera Lozoya, Daniel C. Lee, and Nicholas Ayache. Fine-tuned convolutional neural nets for cardiac MRI acquisition plane recognition. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, August 2015. Note: This is an electronic version of an article published inComputer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualizationon 13 August 2015, by Taylor & Francis, DOI: 10.1080/21681163.2015.1061448.Available online at: http://www.tandfonline.com/10.1080/21681163.2015.1061448. Keyword(s): Transfer learning, Fine-tuning, SSFP, Planes of acquisition, Machine learning, Cardiac magnetic resonance, Convolutional neural networks, Magnetic resonance, Cardiac imaging, Deep learning. [bibtex-entry]



82. Bjoern H Menze, Koen van Leemput, Danial Lashkari, Tammy Riklin-Raviv, Ezequiel Geremia, Esther Alberts, Philipp Gruber, Susanne Wegener, Marc-André Weber, Gabor Szekely, Nicholas Ayache, and Polina Golland. A generative probabilistic model and discriminative extensions for brain lesion segmentation -- with application to tumor and stroke. IEEE Transactions on Medical Imaging, November 2015. [bibtex-entry]



83. Catalina Tobon-Gomez, Arjan J. Geers, Jochen Peters, Jürgen Weese, Karen Pinto, Rashed Karim, Mohammed Ammar, Abdelaziz Daoudi, Jan Margeta, Zulma Sandoval, Birgit Stender, Yefeng Zheng, Maria A Zuluaga, Julian Betancur, Nicholas Ayache, Mohammed Amine Chikh, Jean-Louis Dillenseger, Michael B. Kelm, Saïd Mahmoudi, Sébastien Ourselin, Alexander Schlaefer, Tobias Schaeffter, Reza Razavi, and Kawal S. Rhode. Benchmark for Algorithms Segmenting the Left Atrium From 3D CT and MRI Datasets. IEEE Transactions on Medical Imaging, 34(7):1460-1473, July 2015. Keyword(s): Benchmark testing, automatic segmentations, atrial fibrillation ablation guidance, anatomical regions, 3D CT datasets, Left Atrial Segmentation Challenge, left atrial surface, ground truth, image segmentation, LA appendage trunk, LASC, LA segmentation, left atrial anatomy, left atrium, Magnetic Resonance Imaging, Measurement, medical image processing, MRI datasets, multiple input data, physiological models, pulmonary vein proximal sections, region growing approach, Shape, standardisation framework, statistical analysis, statistical models, biomedical MRI, biophysical modelling, blood vessels, cardiovascular disease, cardiovascular system, Computed Tomography, computerised tomography, diseases, Educational institutions, electroanatomical mapping systems, evaluation code, fibrosis quantification. [bibtex-entry]



84. Clair Vandersteen, Thomas Demarcy, Coralie Roger, Eric Fontas, Charles Raffaelli, Nicholas Ayache, Hervé Delingette, and Nicolas Guevara. Impact of the surgical experience on cochleostomy location: a comparative temporal bone study between endaural and posterior tympanotomy approaches for cochlear implantation. European Archives of Oto-Rhino-Laryngology, pp 1-7, 2015. Keyword(s): Cochlear implantation, Cochleostomy, Minimally invasive surgery, Endaural approach, Learning skills, Surgery resident, Compétences d'apprentissage, Voie endaurale, Chirurgie mini-invasive, Cochléostomie, Implantation cochléaire, Interne en chirurgie. [bibtex-entry]



85. Ken C.L. Wong, Maxime Sermesant, Kawal Rhode, Matthew Ginks, C. Aldo Rinaldi, Reza Razavi, Hervé Delingette, and Nicholas Ayache. Velocity-based cardiac contractility personalization from images using derivative-free optimization. Journal of the mechanical behavior of biomedical materials, 43:35-52, March 2015. Keyword(s): parameter estimation, model personalization, derivative-free optimization, Cardiac contractility, cardiac electromechanical model. [bibtex-entry]



86. Hervé Delingette and Nicholas Ayache. Building Patient-Specific Physical and Physiological Computational Models from Medical Images. In Paragios, Nikos, Duncan, Jim, Ayache, and Nicholas, editors, Handbook of Biomedical Imaging: Methodologies and Clinical Research, pages 169-182. Springer US, 2015. [bibtex-entry]



87. Antoine Iannessi, Pierre Yves Marcy, Olivier Clatz, Nicholas Ayache, and Pierre Fillard. Touchless User Interface for Intraoperative Image Control: Almost There. Radiographics, 34(4), July 2014. [bibtex-entry]



88. A Iannessi, P.-y Marcy, O Clatz, P Fillard, and N Ayache. Touchless intra-operative display for interventional radiologist. Diagnostic and Interventional Imaging, 2014. Keyword(s): User-computer interface, Gesture, CT-scan, Interventional radiology, Sterility. [bibtex-entry]



89. Y. Komatsu, A. Jadidi, F. Sacher, A. Denis, M. Daly, N. Derval, A. Shah, H. Lehrmann, C.-I. Park, R. Weber, T. Arentz, G. Pache, Maxime Sermesant, Nicholas Ayache, J. Relan, M. Montaudon, F. Laurent, M. Hocini, M. Haissaguerre, P. Jais, and Hubert Cochet. Relationship Between MDCT-Imaged Myocardial Fat and Ventricular Tachycardia Substrate in Arrhythmogenic Right Ventricular Cardiomyopathy. Journal of the American Heart Association, 3(4):10, 2014. [bibtex-entry]



90. Herve Lombaert, Leo Grady, Xavier Pennec, Nicholas Ayache, and Farida Cheriet. Spectral Log-Demons: Diffeomorphic Image Registration with Very Large Deformations. International Journal of Computer Vision, 107(3):254-271, May 2014. [bibtex-entry]



91. Bjoern Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elisabeth Gerstner, Marc-Andre Weber, Tal Arbel, Brian Avants, Nicholas Ayache, Patricia Buendia, Louis Collins, Nicolas Cordier, Jason Corso, Antonio Criminisi, Tilak Das, Hervé Delingette, Cagatay Demiralp, Christopher Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan Iftekharuddin, Raj Jena, Nigel John, Ender Konukoglu, Danial Lashkari, Jose Antonio Mariz, Raphael Meier, Sergio Pereira, Doina Precup, S. J. Price, Tammy Riklin-Raviv, Syed Reza, Michael Ryan, Lawrence Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos Silva, Nuno Sousa, Nagesh Subbanna, Gabor Szekely, Thomas Taylor, Owen Thomas, Nicholas Tustison, Gozde Unal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, Darko Zikic, Marcel Prastawa, Mauricio Reyes, and Koen van Leemput. The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). IEEE Transactions on Medical Imaging, 34(10):1993-2024, October 2014. [bibtex-entry]



92. Adityo Prakosa, Maxime Sermesant, Pascal Allain, Nicolas Villain, Christopher Aldo Rinaldi, Kawal Rhode, Reza Razavi, Hervé Delingette, and Nicholas Ayache. Cardiac Electrophysiological Activation Pattern Estimation from Images using a Patient-Specific Database of Synthetic Image Sequences. IEEE Transactions on Biomedical Engineering, 61(2):235 - 245, 2014. [bibtex-entry]



93. Avan Suinesiaputra, Brett Cowan, Ahmed O. Al-Agamy, Mustafa A. Alattar, Nicholas Ayache, Ahmed S. Fahmy, Ayman M. Khalifa, Pau Medrano-Gracia, Marie-Pierre Jolly, Alan H. Kadish, Daniel C. Lee, Jan Margeta, Simon K. Warfield, and Alistair Young. A Collaborative Resource to Build Consensus for Automated Left Ventricular Segmentation of Cardiac MR Images. Medical Image Analysis, 18(1):50-62, 2014. [bibtex-entry]



94. A. Frangi, Denis Friboulet, Nicholas Ayache, H. Delingette, T. Glatard, C. Hoogendoorn, L. Humbert, K. Lekadir, I. Larrabide, Y. Martelli, F. Peyrin, X. Planes, Maxime Sermesant, M.C. Villa-Uriol, T. Whitmarsh, and D. Atkinson. Image Based Modelling. In Peter Coveney, Vanessa Diaz, Peter Hunter, and Marco Viceconti, editors, Computational Biomedicine, pages 59 - 82. Oxford University Press, 2014. [bibtex-entry]



95. Hubert Cochet, Y. Komatsu, F. Sacher, A. Jadidi, D. Scherr, M. Riffaud, N. Derval, A. Shah, L. Roten, P. Pascale, Jatin Relan, Maxime Sermesant, Nicholas Ayache, M. Montaudon, F. Laurent, M. Hocini, M. Haïssaguerre, and Pierre Jaïs. Integration of Merged Delayed-Enhanced Magnetic Resonance Imaging and Multi-Detector Computed Tomography for the Guidance of Ventricular Tachycardia Ablation: A Pilot Study. Journal of Cardiovascular Electrophysiology, 24(4):419-426, April 2013. [bibtex-entry]



96. Stanley Durrleman, Xavier Pennec, Alain Trouvé, José Braga, Guido Gerig, and Nicholas Ayache. Toward a Comprehensive Framework for the Spatiotemporal Statistical Analysis of Longitudinal Shape Data. International Journal of Computer Vision, 103(1):22-59, May 2013. [bibtex-entry]



97. Alejandro F. Frangi, D. Rod Hose, Peter J. Hunter, Nicholas Ayache, and Dana Brooks. Guest Editorial Special Issue on Medical Imaging and Image Computing in Computational Physiology. IEEE Transactions on Medical Imaging, 32(1):1-7, January 2013. [bibtex-entry]



98. Yuki Komatsu, Hubert Cochet, Amir Jadidi, Frédéric Sacher, Ashok Shah, Nicolas Derval, Daniel Scherr, Patrizio Pascale, Laurent Roten, Arnaud Denis, Khaled Ramoul, Shinsuke Miyazaki, Matthew Daly, Matthieu Riffaud, Maxime Sermesant, Jatin Relan, Nicholas Ayache, Steven Kim, Michel Montaudon, François Laurent, Mélèze Hocini, Michel Haïssaguerre, and Pierre Jaïs. Regional myocardial wall thinning at multidetector computed tomography correlates to arrhythmogenic substrate in postinfarction ventricular tachycardia: assessment of structural and electrical substrate. Circulation. Arrhythmia and electrophysiology, 6(2):342-350, 2013. [bibtex-entry]



99. Benedetta Leonardi, Andrew Taylor, Tommaso Mansi, Ingmar Voigt, Maxime Sermesant, Xavier Pennec, Nicholas Ayache, Younes Boudjemline, and Giacomo Pongiglione. Computational modelling of the right ventricle in repaired tetralogy of Fallot: can it provide insight into patient treatment?. European Heart Journal - Cardiovascular Imaging, 14(4):381-6, April 2013. [bibtex-entry]



100. Marco Lorenzi, Nicholas Ayache, Giovanni B. Frisoni, and Xavier Pennec. LCC-Demons: a robust and accurate symmetric diffeomorphic registration algorithm. NeuroImage, 81(1):470-483, 2013. [bibtex-entry]



101. Stéphanie Marchesseau, Hervé Delingette, Maxime Sermesant, Rocio Cabrera Lozoya, Catalina Tobon-Gomez, Philippe Moireau, Rosa Maria Figueras I Ventura, Karim Lekadir, Alfredo Hernandez, Mireille Garreau, Erwan Donal, Christophe Leclercq, Simon G. Duckett, Kawal Rhode, Christopher Aldo Rinaldi, Alejandro F. Frangi, Reza Razavi, Dominique Chapelle, and Nicholas Ayache. Personalization of a Cardiac Electromechanical Model using Reduced Order Unscented Kalman Filtering from Regional Volumes. Medical Image Analysis, 17(7):816-829, May 2013. [bibtex-entry]



102. Stéphanie Marchesseau, Hervé Delingette, Maxime Sermesant, Michel Sorine, Kawal Rhode, Simon G. Duckett, Christopher Aldo Rinaldi, Reza Razavi, and Nicholas Ayache. Preliminary Specificity Study of the Bestel-Clément-Sorine Electromechanical Model of the Heart using Parameter Calibration from Medical Images. Journal of the mechanical behavior of biomedical materials, 20:259-271, 2013. [bibtex-entry]



103. A. Prakosa, Maxime Sermesant, H. Delingette, S. Marchesseau, E. Saloux, Pascal Allain, N. Villain, and Nicholas Ayache. Generation of Synthetic but Visually Realistic Time Series of Cardiac Images Combining a Biophysical Model and Clinical Images. IEEE Transactions on Medical Imaging, 32(1):99-109, January 2013. [bibtex-entry]



104. Islem Rekik, Stéphanie Allassonnière, Olivier Clatz, Ezequiel Geremia, Erin Stretton, Hervé Delingette, and Nicholas Ayache. Tumor Growth Parameters Estimation and Source Localization From a Unique Time Point: Application to Low-grade Gliomas. Computer Vision and Image Understanding, 117(3):238-249, 2013. [bibtex-entry]



105. Catalina Tobon-Gomez, Nicolas Duchateau, Rafael Sebastian, Stéphanie Marchesseau, Oscar Camara, Erwan Donal, Mathieu de Craene, Ali Pashaei, Jatin Relan, Martin Steghofer, Pablo Lamata, Hervé Delingette, Simon G. Duckett, Mireille Garreau, Alfredo Hernandez, Kawal S. Rhode, Maxime Sermesant, Nicholas Ayache, Christophe Leclercq, Reza Razavi, Nicolas P. Smith, and Alejandro F. Frangi. Understanding the mechanisms amenable to CRT response: from pre-operative multimodal image data to patient-specific computational models. Medical and Biological Engineering and Computing, pp 1-16, 2013. [bibtex-entry]



106. Jan Unkelbach, Bjoern Menze, Ender Konukoglu, Florian Dittmann, Nicholas Ayache, and Helen Shi. Radiotherapy planning for glioblastoma based on a tumor growth model: implications for spatial dose redistribution. Physics in Medicine and Biology, December 2013. [bibtex-entry]



107. Jan Unkelbach, Bjoern Menze, Ender Konukoglu, Florian Dittmann, Matthieu Le, Nicholas Ayache, and Helen Shi. Radiotherapy planning for glioblastoma based on a tumor growth model: improving target volume delineation. Physics in Medicine and Biology, December 2013. [bibtex-entry]



108. Jürgen Weese, Nicholas Ayache, and Nicolas P. Smith. Personalized Cardiac Modeling and Simulations in euHeart. Medical and Biological Engineering and Computing, 2013. Note: Editorial. [bibtex-entry]



109. Ezequiel Geremia, Darko Zikic, Olivier Clatz, Bjoern H. Menze, Ben Glocker, Ender Konukoglu, Jamie Shotton, O. M. Thomas, S. J. Price, Tilak Das, Raj Jena, Nicholas Ayache, and Antonio Criminisi. Classification Forests for Semantic Segmentation of Brain Lesions in Multi-channel MRI. In Criminisi, Antonio, Shotton, and J., editors, Decision Forests for Computer Vision and Medical Image Analysis, Advances in Computer Vision and Pattern Recognition, pages 245-260. Springer London, 2013. [bibtex-entry]



110. Barbara André, Tom Vercauteren, Anna M. Buchner, Murli Krishna, Nicholas Ayache, and Michael B. Wallace. Software for Automated Classification of probe-based Confocal Laser Endomicroscopy Videos of Colorectal Polyps. World Journal of Gastroenterology, October 2012. [bibtex-entry]



111. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. Learning Semantic and Visual Similarity for Endomicroscopy Video Retrieval. IEEE Transactions on Medical Imaging, 31(6):1276-1288, June 2012. [bibtex-entry]



112. H. Cochet, Y. Komatsu, F. Sacher, A. Jadidi, D. Scherr, M. Riffaud, N. Derval, A. Shah, L. Roten, P. Pascale, Jatin Relan, Maxime Sermesant, Nicholas Ayache, M. Montaudon, F. Laurent, M. Hocini, M. Haïssaguerre, and P. Jaïs. Integration of Merged Delayed-Enhanced Magnetic Resonance Imaging and Multi-Detector Computed Tomography for the Guidance of Ventricular Tachycardia Ablation: A Pilot Study. Journal of Cardiovascular Electrophysiology, 2012. ISSN: 1540-8167. Keyword(s): ventricular tachycardia, MRI, computed tomography, catheter ablation, myocardial infarction, cardiomyopathy. [bibtex-entry]



113. Hervé Delingette, F. Billet, Ken C. L. Wong, Maxime Sermesant, Kawal Rhode, M. Ginks, C. Aldo Rinaldi, Reza Razavi, and Nicholas Ayache. Personalization of Cardiac Motion and Contractility From Images Using Variational Data Assimilation. Biomedical Engineering, IEEE Transactions on, 59(1):20 -24, jan. 2012. ISSN: 0018-9294. [bibtex-entry]



114. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, and José Braga. Comparison of the endocranial ontogenies between chimpanzees and bonobos via temporal regression and spatiotemporal registration. Journal of Human Evolution, 62(1):74 - 88, 2012. ISSN: 0047-2484. Keyword(s): Endocranium. [bibtex-entry]



115. Hervé Lombaert, Jean-Marc Peyrat, Pierre Croisille, Stanislas Rapacchi, Laurent Fanton, Farida Cheriet, Patrick Clarysse, Isabelle Magnin, Hervé Delingette, and Nicholas Ayache. Human Atlas of the Cardiac Fiber Architecture: Study on a Healthy Population. IEEE Trans. on Medical Imaging, 31(7):1436-1447, 2012. [bibtex-entry]



116. Stéphanie Marchesseau, Hervé Delingette, Maxime Sermesant, and Nicholas Ayache. Fast Parameter Calibration of a Cardiac Electromechanical Model from Medical Images based on the Unscented Transform. Biomechanics and Modeling in Mechanobiology, 2012. [bibtex-entry]



117. M. Pop, Maxime Sermesant, G. Liu, Jatin Relan, Tommaso Mansi, A. Soong, Jean-Marc Peyrat, M.V. Truong, P. Fefer, Elliot R. McVeigh, Hervé Delingette, A.J. Dick, Nicholas Ayache, and G.A Wright. Construction of 3D MR image-based computer models of pathologic hearts, augmented with histology and optical fluorescence imaging to characterize action potential propagation. Medical Image Analysis, 16(2):505-523, February 2012. [bibtex-entry]



118. Maxime Sermesant, R. Chabiniok, P. Chinchapatnam, Tommaso Mansi, F. Billet, P. Moireau, Jean-Marc Peyrat, Ken C. L. Wong, Jatin Relan, Kawal Rhode, M. Ginks, P. Lambiase, Hervé Delingette, M. Sorine, C. Aldo Rinaldi, D. Chapelle, Reza Razavi, and Nicholas Ayache. Patient-specific electromechanical models of the heart for the prediction of pacing acute effects in CRT: A preliminary clinical validation. Medical Image Analysis, 16(1):201-215, 2012. [bibtex-entry]



119. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. A Smart Atlas for Endomicroscopy using Automated Video Retrieval. Medical Image Analysis, 15(4):460-476, August 2011. Keyword(s): Content-Based Video Retrieval (CBVR), Endomicroscopy, Bag-of-Visual-Words (BoW), Video-mosaicing. [Abstract] [bibtex-entry]



120. Nicholas Ayache, Olivier Clatz, Hervé Delingette, Grégoire Malandain, Xavier Pennec, and Maxime Sermesant. Vers un patient numérique personnalisé pour le diagnostic et la thérapie guidés par l'image. Médecine / Sciences, 27:208-213, March 2011. [bibtex-entry]



121. N. Ayache, H. Delingette, and M. Sermesant. Le coeur numérique personnalisé. Bulletin de l'Académie Nationale de Médecine, 195(8), November 2011. [bibtex-entry]



122. O. Camara, M. Sermesant, P. Lamata, L. Wang, M. Pop, J. Relan, M. De Craene, H. Delingette, H. Liu, S. Niederer, A. Pashaei, G. Plank, D. Romero, R. Sebastian, K.C.L. Wong, H. Zhang, N. Ayache, A.F. Frangi, P. Shi, N.P. Smith, and G.A. Wright. Inter-Model Consistency and Complementarity: Learning from ex-vivo Imaging and Electrophysiological Data towards an Integrated Understanding of Cardiac Physiology. Progress in Biophysics and Molecular Biology, 107:122-133, 2011. [bibtex-entry]



123. Hervé Delingette, Florence Billet, Ken C.L. Wong, Maxime Sermesant, S. Rhode, Kawal, Matt Ginks, C.A. Rinaldi, Reza Razavi, and Nicholas Ayache. Personalization of Cardiac Motion and Contractility from Images using Variational Data Assimilation. IEEE Transactions on Biomedical Engineering, 2011. Note: In Press. [Abstract] [bibtex-entry]



124. Stanley Durrleman, Pierre Fillard, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Registration, Atlas Estimation and Variability Analysis of White Matter Fiber Bundles Modeled as Currents. NeuroImage, 55(3):1073-1090, 2011. ISSN: 1053-8119. Keyword(s): Computational Anatomy. [bibtex-entry]



125. Ezequiel Geremia, Olivier Clatz, Bjoern H. Menze, Ender Konukoglu, Antonio Criminisi, and Nicholas Ayache. Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel Magnetic Resonance Images. NeuroImage, 57(2):378-90, July 2011. [bibtex-entry]



126. E. Konukoglu, J. Relan, U. Cilingir, B. Menze, P. Chinchapatnam, A. Jadidi, H. Cochet, M. Hocini, H. Delingette, P. Jaïs, M. Haïssaguerre, N. Ayache, and M. Sermesant. Efficient Probabilistic Model Personalization Integrating Uncertainty on Data and Parameters: Application to Eikonal-Diffusion Models in Cardiac Electrophysiology. Progress in Biophysics and Molecular Biology, 107(1):134-146, October 2011. [bibtex-entry]



127. Tommaso Mansi, Xavier Pennec, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. iLogDemons: A Demons-Based Registration Algorithm for Tracking Incompressible Elastic Biological Tissues. International Journal of Computer Vision, 92(1):92-111, 2011. [bibtex-entry]



128. Tommaso Mansi, Ingmar Voigt, Benedetta Leonardi, Xavier Pennec, Stanley Durrleman, Maxime Sermesant, Hervé Delingette, Andrew M. Taylor, Younes Boudjemline, Giacomo Pongiglione, and Nicholas Ayache. A Statistical Model for Quantification and Prediction of Cardiac Remodelling: Application to Tetralogy of Fallot. IEEE Transactions on Medical Imaging, 9(30):1605-1616, September 2011. [bibtex-entry]



129. Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Gregoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie R. McClelland, Sebastien Ourselin, Sascha E.A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, Rene Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas Tustison, Brian Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, and Josien P.W. Pluim. Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge. IEEE Trans Med Imaging, 30(11):1901-20, November 2011. [Abstract] [bibtex-entry]



130. E. Pernod, M. Sermesant, E. Konukoglu, J. Relan, H. Delingette, and N. Ayache. A Multi-Front Eikonal Model of Cardiac Electrophysiology for Interactive Simulation of Radio-Frequency Ablation. Computers and Graphics, 35:431-440, 2011. [bibtex-entry]



131. K.M Pohl, E. Konukoglu, S. Novellas, N. Ayache, A. Fedorov, I.-F. Talos, A. Golby, W.M. Wells, R. Kikinis, and P.M. Black. A New Metric for Detecting Change in Slowly Evolving Brain Tumors: Validation in Meningioma Patients. Neurosurgery, 68(1 Suppl Operative):225-33, March 2011. [bibtex-entry]



132. M. Pop, M. Sermesant, T. Mansi, E. Crystal, S. Ghate, J. Peyrat, I. Lashevsky, Beiping Qiang, E. McVeigh, N. Ayache, and G.A. Wright. Correspondence Between Simple 3-D MRI-Based Computer Models and In-Vivo EP Measurements in Swine With Chronic Infarctions. Biomedical Engineering, IEEE Transactions on, 58(12):3483-3486, dec. 2011. ISSN: 0018-9294. [bibtex-entry]



133. Jatin Relan, Phani Chinchapatnam, Maxime Sermesant, Kawal Rhode, Matt Ginks, Hervé Delingette, C. Aldo Rinaldi, Reza Razavi, and Nicholas Ayache. Coupled Personalization of Cardiac Electrophysiology Models for Prediction of Ischaemic Ventricular Tachycardia. Journal of the Royal Society Interface Focus, 1(3):396-407, 2011. [bibtex-entry]



134. Jatin Relan, Mihaela Pop, Hervé Delingette, Graham Wright, Nicholas Ayache, and Maxime Sermesant. Personalisation of a Cardiac Electrophysiology Model using Optical Mapping and MRI for Prediction of Changes with Pacing. IEEE Transactions on Bio-Medical Engineering, 58(12):3339-3349, 2011. [bibtex-entry]



135. N. Smith, A. de Vecchi, M. McCormick, D. Nordsletten, O. Camara, A.F. Frangi, H. Delingette, M. Sermesant, J. Relan, N. Ayache, M. W. Krueger, W. Schulze, R. Hose, I. Valverde, P. Beerbaum, C. Staicu, M. Siebes, J. Spaan, P. Hunter, J. Weese, H. Lehmann, D. Chapelle, and R. Razavi. euHeart: Personalized and integrated cardiac care using patient-specific cardiovascular modelling. Journal of the Royal Society Interface Focus, 1(3):349-364, 2011. ISSN: 2042-8898. [bibtex-entry]



136. B H Menze, E Stretton, E Konukoglu, and N. Ayache. Image-based modeling of tumor growth in patients with glioma.. In C S Garbe, R Rannacher, U Platt, and T Wagner, editors, Optimal control in image processing. Springer, Heidelberg/Germany, 2011. [bibtex-entry]



137. Damien Galanaud, Stéphane Haik, Marius George Linguraru, Jean-Philippe Ranjeva, Baptiste Faucheux, Elsa Kaphan, Nicholas Ayache, Jacques Chiras, Patrick Cozzone, Didier Dormont, and Jean-Philippe Brandel. Combined diffusion imaging and MR Spectroscopy in Human Prion Diseases. AJNR. American journal of neuroradiology, 31(7):1311-8, 2010. [Abstract] [bibtex-entry]



138. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating Glioma Invasion Margin in Brain Magnetic Resonance Images: Suggesting New Irradiation Margins. Medical Image Analysis, 14(2):111-125, 2010. [bibtex-entry]



139. Ender Konukoglu, Olivier Clatz, Bjoern H. Menze, Marc-André Weber, Bram Stieltjes, Emmanuel Mandonnet, Hervé Delingette, and Nicholas Ayache. Image Guided Personalization of Reaction-Diffusion Type Tumor Growth Models Using Modified Anisotropic Eikonal Equations. IEEE Transactions on Medical Imaging, 29(1):77-95, 2010. [bibtex-entry]



140. Jean-Marc Peyrat, Hervé Delingette, Maxime Sermesant, Chenyang Xu, and Nicholas Ayache. Registration of 4D Cardiac CT Sequences Under Trajectory Constraints With Multichannel Diffeomorphic Demons. IEEE Transactions on Medical Imaging, 29(7):1351-1368, July 2010. [bibtex-entry]



141. Boon Thye Thomas Yeo, Mert Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl, and Polina Golland. Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration. IEEE Transactions on Medical Imaging, 29(3):650-668, March 2010. Note: PMID:19709963. [Abstract] [bibtex-entry]



142. Ender Konukoglu, Olivier Clatz, Hervé Delingette, and Nicholas Ayache. Personalization of Reaction-Diffusion Tumor Growth Models in MR Images: Application to Brain Gliomas Characterization and Radiotherapy Planning. In Thomas S. Deisboeck and Georgios Stamatakos, editors, Multiscale Cancer Modeling, Chapman & Hall/CRC Mathematical & Computational Biology. CRC Press, December 2010. [bibtex-entry]



143. Vincent Arsigny, Olivier Commowick, Nicholas Ayache, and Xavier Pennec. A Fast and Log-Euclidean Polyaffine Framework for Locally Linear Registration. Journal of Mathematical Imaging and Vision, 33(2):222-238, 2009. [bibtex-entry]



144. Éric Bardinet, Manik Bhattacharjee, Didier Dormont, Bernard Pidoux, Grégoire Malandain, Michael Schupbach, Nicholas Ayache, Philippe Cornu, Yves Agid, and Jerome Yelnik. A three-dimensional histological atlas of the human basal ganglia. II. Atlas deformation strategy and evaluation in deep brain stimulation for Parkinson disease.. Journal of Neurosurgery, 110(2):208-19, February 2009. Keyword(s): Basal Ganglia, pathology, Brain Mapping, methods, Deep Brain Stimulation, methods, Humans, Image Interpretation Computer-Assisted, methods, Imaging Three-Dimensional, methods, Magnetic Resonance Imaging, methods, Medical Illustration, Microelectrodes, Microscopy, Parkinson Disease, pathology, Red Nucleus, pathology, Sensitivity and Specificity, Substantia Nigra, pathology, Subthalamic Nucleus, pathology. [Abstract] [bibtex-entry]



145. Jaydev P. Desai and Nicholas Ayache. Editorial: Special Issue on Medical Robotics. International Journal of Robotics Research, 28(9):1099-1100, 2009. [bibtex-entry]



146. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Statistical Models on Sets of Curves and Surfaces based on Currents. Medical Image Analysis, 13(5):793-808, October 2009. [bibtex-entry]



147. Heike Hufnagel, Jan Ehrhardt, Xavier Pennec, Nicholas Ayache, and Heinz Handels. Computation of a Probabilistic Statistical Shape Model in a Maximum-a-posteriori Framework. Methods of Information in Medicine, 48(4):314-319, 2009. [bibtex-entry]



148. S. Nicolau, Xavier Pennec, Luc Soler, X. Buy, A. Gangi, Nicholas Ayache, and J. Marescaux. An Augmented Reality System for Liver Thermal Ablation: Design and Evaluation on Clinical Cases. Medical Image Analysis, 13(3):494-506, June 2009. [bibtex-entry]



149. Mihaela Pop, Maxime Sermesant, D Lepiller, M V Truong, Elliot McVeigh, Eugene Crystal, Alexander Dick, Hervé Delingette, Nicholas Ayache, and Graham Wright. Fusion of optical imaging and MRI for the evaluation and adjustment of macroscopic models of cardiac electrophysiology: A feasibility study. Medical Image Analysis, 13(2):370-80, April 2009. [bibtex-entry]



150. Jean-Christophe Souplet, Christine Lebrun, Stéphane Chanalet, Nicholas Ayache, and Grégoire Malandain. Revue des approches de segmentation des lésions de sclérose en plaques dans les séquences conventionnelles IRM. Revue Neurologique, 165(1):7-14, 2009. Note: In french. [bibtex-entry]



151. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Diffeomorphic Demons: Efficient Non-parametric Image Registration. NeuroImage, 45(1, Supp.1):S61-S72, March 2009. [bibtex-entry]



152. Boon Thye Thomas Yeo, Tom Vercauteren, Pierre Fillard, Jean-Marc Peyrat, Xavier Pennec, Polina Golland, Nicholas Ayache, and Olivier Clatz. DT-REFinD: Diffusion Tensor Registration with Exact Finite-Strain Differential. IEEE Transactions on Medical Imaging, 28(12):1914-1928, December 2009. Note: PMID:19556193. [bibtex-entry]



153. Nicholas Ayache, Olivier Clatz, Hervé Delingette, Grégoire Malandain, Xavier Pennec, and Maxime Sermesant. Asclepios: a Research Project-Team at INRIA for the Analysis and Simulation of Biomedical Images. In Y. Bertot, G. Huet, J.-J. Lévy, and G. Plotkin, editors, From semantics to computer science: essays in honor of Gilles Kahn, pages 415-436. Cambridge University Press, 2009. [bibtex-entry]



154. Tommaso Mansi, Barbara André, Michael Lynch, Maxime Sermesant, Hervé Delingette, Younes Boudjemline, and Nicholas Ayache. Virtual Pulmonary Valve Replacement Interventions with a Personalised Cardiac Electromechanical Model. In Nadia Magnenat-Thalmann, Jian J. Zhang, and David D. Feng, editors, Recent Advances in the 3D Physiological Human, pages 201-210. Springer, November 2009. ISBN: 978-1-84882-564-2. [bibtex-entry]



155. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, and Nicholas Ayache. Articulated Spine Models for 3D Reconstruction from Partial Radiographic Data. IEEE Transactions on Bio-Medical Engineering, 55(11):2565-2574, November 2008. [bibtex-entry]



156. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, and Nicholas Ayache. Geometric Variability of the Scoliotic Spine using Statistics on Articulated Shape Models. IEEE Transactions on Medical Imaging, 27(4):557-568, 2008. [bibtex-entry]



157. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, and Nicholas Ayache. Principal Deformations Modes of Articulated Models for the Analysis of 3D Spine Deformities. Electronic Letters on Computer Vision and Image Analysis, 7(4):13-31, December 2008. [bibtex-entry]



158. Pierre-Yves Bondiau, Olivier Clatz, Maxime Sermesant, Pierre-Yves Marcy, Hervé Delingette, Marc Frenay, and Nicholas Ayache. Biocomputing: numerical simulation of glioblastoma growth using diffusion tensor imaging. Physics in Medicine and Biology, 53(4):879-93, February 2008. [bibtex-entry]



159. Olivier Commowick, Vincent Arsigny, Aurélie Isambert, Jimena Costa, Frédéric Dhermain, François Bidault, Pierre-Yves Bondiau, Nicholas Ayache, and Grégoire Malandain. An efficient locally affine framework for the smooth registration of anatomical structures. Medical Image Analysis, 12(4):427-41, August 2008. Keyword(s): Algorithms, Brain, anatomy & histology, Diagnostic Imaging, methods, Humans, Image Processing Computer-Assisted, Radiotherapy Planning Computer-Assisted, methods, Sensitivity and Specificity. [Abstract] [bibtex-entry]



160. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Paul Thompson, and Nicholas Ayache. Inferring brain variability from diffeomorphic deformations of currents: an integrative approach. Medical Image Analysis, 12(5):626-637, 2008. [bibtex-entry]



161. S Haik, D Galanaud, MG Linguraru, K Peoc'h, N Privat, BA Faucheux, N Ayache, JJ Hauw, D Dormont, and JP Brandel. In Vivo Detection of Thalamic Gliosis: A Pathoradiologic Demonstration in Familial Fatal Insomnia. Archives of Neurology, 65(4):545-549, April 2008. [Abstract] [bibtex-entry]



162. H. Hufnagel, X. Pennec, J. Ehrhardt, N. Ayache, and H. Handels. Generation of a Statistical Shape Model with Probabilistic Point Correspondences and EM-ICP. International Journal for Computer Assisted Radiology and Surgery, 2(5):265-273, March 2008. [bibtex-entry]



163. M Sermesant, J M Peyrat, P Chinchapatnam, F Billet, T Mansi, K Rhode, H Delingette, R Razavi, and N Ayache. Toward patient-specific myocardial models of the heart. Heart Failure Clinics, 4(3):289-301, July 2008. [bibtex-entry]



164. Ender Konukoglu, Xavier Pennec, Olivier Clatz, and Nicholas Ayache. Tumor Growth Modeling in Oncological Image Analysis. In I. Bankman, editor, Handbook of Medical Image Processing and Analysis - New edition, chapter 18, pages 297-307. Academic Press, December 2008. ISBN: 13: 978-0-12-373904-9. [bibtex-entry]



165. Xavier Pennec, Nicholas Ayache, and Jean-Philippe Thirion. Landmark-based registration using features identified through differential geometry. In I. Bankman, editor, Handbook of Medical Image Processing and Analysis - New edition, chapter 34, pages 565-578. Academic Press, December 2008. ISBN: 13: 978-0-12-373904-9. Keyword(s): registration, matching, validation, uncertainty. [bibtex-entry]



166. Tom Vercauteren, Nicholas Ayache, Nicolas Savoire, Grégoire Malandain, and Aymeric Perchant. Processing of In Vivo Fibered Confocal Microscopy Video Sequences. In Jens Rittscher, Raghu Machiraju, and Stephen T. C. Wong, editors, Microscopic Image Analysis for Life Science Applications, chapter 19, pages 441-463. Artech House, 2008. [bibtex-entry]



167. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Geometric Means in a Novel Vector Space Structure on Symmetric Positive-Definite Matrices. SIAM Journal on Matrix Analysis and Applications, 29(1):328-347, 2007. Keyword(s): DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics. [bibtex-entry]



168. Olivier Clatz, Stéphane Litrico, Hervé Delingette, Philippe Paquis, and Nicholas Ayache. Dynamic Model of Communicating Hydrocephalus for Surgery Simulation. IEEE Transactions on Bio-Medical Engineering, 54(4):755-758, April 2007. [bibtex-entry]



169. Julien Dauguet, Thierry Delzescaux, Françoise Condé, Jean-François Mangin, Nicholas Ayache, Philippe Hantraye, and Vincent Frouin. Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain. Journal of Neuroscience Methods, 164(1):191-204, 2007. [bibtex-entry]



170. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Kiralee M. Hayashi, Paul M. Thompson, and Nicholas Ayache. Measuring Brain Variability by Extrapolating Sparse Tensor Fields Measured on Sulcal Lines. NeuroImage, 34(2):639-650, January 2007. Note: Also as INRIA Research Report 5887, April 2006. PMID: 17113311. [bibtex-entry]



171. Pierre Fillard, Xavier Pennec, Vincent Arsigny, and Nicholas Ayache. Clinical DT-MRI Estimation, Smoothing and Fiber Tracking with Log-Euclidean Metrics. IEEE Transactions on Medical Imaging, 26(11):1472-1482, November 2007. [bibtex-entry]



172. Marius G. Linguraru, Miguel A. González Ballester, and Nicholas Ayache. Deformable Atlases for the Segmentation of Internal Brain Nuclei in Magnetic Resonance Imaging. International Journal of Computers, Communication and Control, 2(1):26-36, 2007. [bibtex-entry]



173. Marius George Linguraru, Tom Vercauteren, Mauricio Reyes Aguirre, Miguel Ángel González Ballester, and Nicholas Ayache. Segmentation Propagation from Deformable Atlases for Brain Mapping and Analysis. Brain Research Journal, 1(4):269-287, 2007. [bibtex-entry]



174. Jean-Marc Peyrat, Maxime Sermesant, Xavier Pennec, Hervé Delingette, Chenyang Xu, Eliot R. McVeigh, and Nicholas Ayache. A Computational Framework for the Statistical Analysis of Cardiac Diffusion Tensors: Application to a Small Database of Canine Hearts. IEEE Transactions on Medical Imaging, 26(11):1500-1514, November 2007. [bibtex-entry]



175. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Grégoire Malandain, Sébastien Ourselin, Dominique Tandé, Carine Karachi, Nicholas Ayache, Philippe Cornu, and Yves Agid. A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data. NeuroImage, 34(2):618-38, January 2007. [Abstract] [bibtex-entry]



176. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Log-Euclidean Metrics for Fast and Simple Calculus on Diffusion Tensors. Magnetic Resonance in Medicine, 56(2):411-421, August 2006. Keyword(s): DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics. [bibtex-entry]



177. Christophe Blondel, Grégoire Malandain, Régis Vaillant, and Nicholas Ayache. Reconstruction of Coronary Arteries from a Single Rotational X-Ray Projection Sequence. IEEE Transactions on Medical Imaging, 25(5):653-663, May 2006. Keyword(s): Angiocardiography, Coronarography, Image Motion Analysis, Image Reconstruction, Tomography. [Abstract] [bibtex-entry]



178. Olivier Clatz, Emmanuel Mandonnet, Stéphane Chanalet, Christine Lebrun, Ender Konukoglu, Hervé Delingette, Nicholas Ayache, and Pierre-Yves Bondiau. Modèles Biomathématiques de Croissance Des Gliomes : Recherche en Informatique et Perspectives en Neuro-oncologie. Neurologies, 9(93):665-667, 2006. [bibtex-entry]



179. Hervé Delingette and Nicholas Ayache. La simulation de Chirurgie Hépatique. Pour la science, 52(52):106-109, July 2006. Keyword(s): Simulation. [bibtex-entry]



180. Hervé Delingette, Xavier Pennec, Luc Soler, Jacques Marescaux, and Nicholas Ayache. Computational Models for Image Guided, Robot-Assisted and Simulated Medical Interventions. Proceedings of the IEEE, 94(9):1678- 1688, September 2006. [bibtex-entry]



181. M.G. Linguraru, N. Ayache, E. Bardinet, M.A. González Ballester, D. Galanaud, S. Haïk, B.A. Faucheux, J.J. Hauw, P. Cozzone, D. Dormont, and J.P. Brandel. Differentiation of sCJD and vCJD Forms by Automated Analysis of Basal Ganglia Intensity Distribution in Multisequence MRI of the Brain - Definition and Evaluation of New MRI-based Ratios. IEEE Transactions on Medical Imaging, 25(8):1052-1067, 2006. [bibtex-entry]



182. Valérie Moreau-Villéger, Hervé Delingette, Maxime Sermesant, Hiroshi Ashikaga, Elliot McVeigh, and Nicholas Ayache. Building Maps of Local Apparent Conductivity of the Epicardium with a 2D Electrophysiological Model of the Heart. IEEE Transactions on Bio-Medical Engineering, 53(8):1457-1466, August 2006. [bibtex-entry]



183. Xavier Pennec, Pierre Fillard, and Nicholas Ayache. A Riemannian Framework for Tensor Computing. International Journal of Computer Vision, 66(1):41-66, January 2006. Note: A preliminary version appeared as INRIA Research Report 5255, July 2004. Keyword(s): Tensors, regularization, PDE, geometry, Riemannian geometry. [Abstract] [bibtex-entry]



184. Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. An Electromechanical Model of the Heart for Image Analysis and Simulation. IEEE Transactions on Medical Imaging, 25(5):612-625, 2006. [bibtex-entry]



185. Tom Vercauteren, Aymeric Perchant, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy. Medical Image Analysis, 10(5):673-692, October 2006. Note: Annual Medical Image Analysis (MedIA) Best Paper Award 2006. PMID: 16887375. [bibtex-entry]



186. Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Polyrigid and Polyaffine Transformations: a Novel Geometrical Tool to Deal with Non-Rigid Deformations - Application to the registration of histological slices. Medical Image Analysis, 9(6):507-523, December 2005. Keyword(s): Non-rigid registration, Histological slices, Polyaffine transformations, Ordinary differential equations. [bibtex-entry]



187. Pierre-Yves Bondiau, Gregoire Malandain, Stephane Chanalet, Pierre-Yves Marcy, Jean-Louis Habrand, Francois Fauchon, Philippe Paquis, Adel Courdi, Olivier Commowick, Isabelle Rutten, and Nicholas Ayache. Atlas-based automatic segmentation of MR images: validation study on the brainstem in radiotherapy context. Int J Radiat Oncol Biol Phys, 61(1):289-98, January 2005. Keyword(s): Algorithms, Anatomical Atlas, methods, Brain Neoplasms, pathology, Brain Stem, anatomy & histology, Humans, Image Interpretation Computer-Assisted, methods, Magnetic Resonance Imaging, methods, Medical Illustration, Observer Variation, Reproducibility of Results, Sensitivity and Specificity. [Abstract] [bibtex-entry]



188. Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Ron Kikinis, Ferenc Jolesz, Nicholas Ayache, and Simon Warfield. Robust Non-Rigid Registration to Capture Brain Shift from Intra-Operative MRI. IEEE Transactions on Medical Imaging, 24(11):1417-1427, Nov. 2005. Keyword(s): Non-rigid registration, intra-operative magnetic resonance imaging, finite element model, brain shift. [Abstract] [bibtex-entry]



189. Olivier Clatz, Maxime Sermesant, Pierre-Yves Bondiau, Hervé Delingette, Simon K. Warfield, Grégoire Malandain, and Nicholas Ayache. Realistic Simulation of the 3D Growth of Brain Tumors in MR Images Coupling Diffusion with Mass Effect. IEEE Transactions on Medical Imaging, 24(10):1334-1346, October 2005. Keyword(s): Tumor, brain, growth, model, simulation. [Abstract] [bibtex-entry]



190. H. Delingette and N. Ayache. Hepatic Surgery Simulation. Communications of the ACM, 48(2):31-36, February 2005. [bibtex-entry]



191. C. Forest, H. Delingette, and N. Ayache. Removing Tetrahedra from manifold tetrahedralisation : application to real-time surgical simulation. Medical Image Analysis, 9(2):113-122, April 2005. Keyword(s): Surgical simulation, Topological modifications, Manifold meshes. [Abstract] [bibtex-entry]



192. Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, and Nicholas Ayache. An augmented reality system to guide radio-frequency tumor ablation. Computer Animation and Virtual World (previously the Journal of Visualization and Computer Animation), 16(1):1-10, 2005. [bibtex-entry]



193. M. Sermesant, K. Rhode, G. Sanchez-Ortiz, O. Camara, R. Andriantsimiavona, S. Hegde, D. Rueckert, P. Lambiase, C. Bucknall, E. Rosenthal, H. Delingette, D. Hill, N. Ayache, and R. Razavi. Simulation of Cardiac Pathologies using an Electromechanical Biventricular Model and XMR Interventional Imaging. Medical Image Analysis, 9(5):467-480, 2005. [bibtex-entry]



194. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. A Grid Service for the Interactive Use of a Parallel Non-Rigid Registration Algorithm of Medical Images. Methods of Information in Medicine, 44(2), 2005. Keyword(s): grid service, registration, non-rigid, parallel. [bibtex-entry]



195. Xavier Pennec, Alexis Roche, Pascal Cathier, and Nicholas Ayache. Non-Rigid MR/US Registration for Tracking Brain Deformations. In R.S. Blum and Zh. Liu, editors, Multi-Sensor Image Fusion and Its Applications, volume 26 of Signal Processing and Communications, chapter 4, pages 107-143. CRC Press - Taylor and Francis, July 2005. Keyword(s): registration, matching, ultrasound, motion tracking, deformations, magnetic resonance, correlation ratio, robust estimation, multimodal. [bibtex-entry]



196. Christophe Blondel, Régis Vaillant, Grégoire Malandain, and Nicholas Ayache. 3-D tomographic reconstruction of coronary arteries using a precomputed 4-D motion field. Physics in Medicine and Biology, 49(11):2197-2208, 2004. [bibtex-entry]



197. P.Y. Bondiau, G. Malandain, S. Chanalet, P.Y. Marcy, C. Foa, and N. Ayache. Traitement des images et radiothérapie. Cancer radiothérapie, 8(2):120-129, 2004. [Abstract] [bibtex-entry]



198. P. Cachier and N. Ayache. Isotropic energies, filters and splines for vectorial regularization. Journal of Mathematical Imaging and Vision, 20(3):251-265, May 2004. Keyword(s): vector field regularization, non-rigid registration, convolution filter, spline. [bibtex-entry]



199. Miguel Angel González Ballester, Xavier Pennec, Marius George Linguraru, and Nicholas Ayache. Generalized Image Models and Their Application as Statistical Models of Images. Medical Image Analysis, 8(3):361-369, September 2004. [bibtex-entry]



200. C Lebrun, D Rey, S Chanalet, V Bourg, C Bensa, M Chatel, N Ayache, and G Malandain. The contribution of automatic anatomical matching of sequential brain MRI scans in the monitoring of multiple sclerosis lesions. Revue Neurologique, 160(8-9):805-10, September 2004. Note: In French. Keyword(s): multiple sclerosis. [Abstract] [bibtex-entry]



201. A. Pitiot, H. Delingette, P. M. Thompson, and N. Ayache. Expert Knowledge Guided Segmentation System for Brain MRI. NeuroImage, 23(supplement 1):S85-S96, 2004. Note: Special Issue: Mathematics in Brain Imaging. [bibtex-entry]



202. Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, Hervé Delingette, and Jacques Marescaux. Traitement d'images médicales pour la planification, la simulation et l'aide intra-opératoire des actes chirurgicaux. La Revue de l'Electricité et de l'Electronique, pp 64-71, janvier 2004. [bibtex-entry]



203. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Grid Powered Nonlinear Image Registration with Locally Adaptive Regularization. Medical Image Analysis, 8(3):325-342, September 2004. Keyword(s): non-rigid registration, adaptive regularization, grid, parallel. [bibtex-entry]



204. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Grid-Enabled Non-Rigid Registration of Medical Images. Parallel Processing Letters, 14(2):197-216, 2004. Keyword(s): grid, non-rigid registration, parallel, cluster. [bibtex-entry]



205. H. Delingette and N. Ayache. Soft Tissue Modeling for Surgery Simulation. In N. Ayache, editor, Computational Models for the Human Body, Handbook of Numerical Analysis (Ed : Ph. Ciarlet), pages 453-550. Elsevier, 2004. [bibtex-entry]



206. Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, Hervé Delingette, Didier Mutter, and Jacques Marescaux. Traitements d'images médicales pour la planification, la simulation et l'aide intra-opératoire des actes chirurgicaux. In M. Faupel, P. Smigielski, and R. Grzymala, editors, Imagerie et Photonique pour les sciences du vivant et la médecine, pages 19-31. Edition Fontis Media, 2004. ISBN: 2-88476-005-9. [bibtex-entry]



207. N. Ayache. Epidaure: a Research Project in Medical Image Analysis, Simulation and Robotics at INRIA. IEEE Transactions on Medical Imaging, 22(10):1185-1201, October 2003. [bibtex-entry]



208. Pascal Cachier, Eric Bardinet, Didier Dormont, Xavier Pennec, and Nicholas Ayache. Iconic Feature Based Nonrigid Registration: The PASHA Algorithm. Computer Vision and Image Understanding, 89(2-3):272-298, Feb.-march 2003. Note: Special Issue on Nonrigid Registration. Keyword(s): registration, matching, similarity measures, deformations. [bibtex-entry]



209. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Création d'un Modèle Biomécanique Spécifique du Cerveau par l'Analyse d'Images et son Application à la Neurochirurgie Stéréotaxique. Mécanique et Industrie, 4(4):429-433, 2003. Note: Numéro spécial CFM 2003. [bibtex-entry]



210. P Hellier, C Barillot, I Corouge, B Gibaud, G Le Goualher, D L Collins, A Evans, G Malandain, N Ayache, G E Christensen, and H J Johnson. Retrospective evaluation of intersubject brain registration. IEEE Transactions on Medical Imaging, 22(9):1120-30, September 2003. [Abstract] [bibtex-entry]



211. J. Montagnat, M. Sermesant, H. Delingette, G. Malandain, and N. Ayache. Anisotropic filtering for model-based segmentation of 4D cylindrical echocardiographic images. Pattern Recognition Letters, 24(4-5):815-828, February 2003. Note: Special Issue on Ultrasonic Image Processing and Analysis. Keyword(s): anisotropic diffusion, 4D, Heart, segmentation, ultrasound, medical images, motion tracking. [bibtex-entry]



212. Xavier Pennec, Pascal Cachier, and Nicholas Ayache. Tracking Brain Deformations in Time-Sequences of 3D US Images. Pattern Recognition Letters, 24(4-5):801-813, February 2003. Note: Special Issue on Ultrasonic Image Processing and Analysis. Keyword(s): registration, matching, ultrasound, motion tracking, deformations. [bibtex-entry]



213. G. Picinbono, H. Delingette, and N. Ayache. Non-Linear Anisotropic Elasticity for Real-Time Surgery Simulation. Graphical Models, 65(5):305-321, September 2003. Keyword(s): journal, simulation. [bibtex-entry]



214. Maxime Sermesant, Clément Forest, Xavier Pennec, Hervé Delingette, and Nicholas Ayache. Deformable biomechanical models: Application to 4D cardiac image analysis. Medical Image Analysis, 7(4):475-488, December 2003. [bibtex-entry]



215. G. Picinbono, H. Delingette, and N. Ayache. Modèle déformable élastique non-linéaire pour la simulation de chirurgie en temps réel. Les Comptes Rendus de l'Académie des Sciences (CRAS), C.R. Biologies, 325(4):335-344, 2002. Keyword(s): journal, simulation. [bibtex-entry]



216. G. Picinbono, J-C. Lombardo, H. Delingette, and N. Ayache. Improving realism of a surgery simulator: linear anisotropic elasticity, complex interactions and force extrapolation. Journal of Visualisation and Computer Animation, 13(3):147-167, July 2002. Keyword(s): journal, simulation. [bibtex-entry]



217. S. Prima, S. Ourselin, and N. Ayache. Computation of the Mid-Sagittal Plane in 3D Brain Images. IEEE Transactions on Medical Imaging, 21(2):122-138, February 2002. Keyword(s): registration, matching. [bibtex-entry]



218. David Rey, Gérard Subsol, Hervé Delingette, and Nicholas Ayache. Automatic Detection and Segmentation of Evolving Processes in 3D Medical Images: Application to Multiple Sclerosis. Medical Image Analysis, 6(2):163-179, June 2002. Keyword(s): Automation, Brain, pathology, Human, Image Processing Computer-Assisted, methods, Imaging Three-Dimensional, methods, Magnetic Resonance Imaging, methods, Models Neurological, Multiple Sclerosis, diagnosis, Reproducibility of Results, Sensitivity and Specificity, Support Non-U.S. Gov't. [Abstract] [bibtex-entry]



219. N. Ayache. Medical Imaging Informatics. From Digital Anatomy to Virtual Scapels and Image Guided Therapy. In R Haux and C Kulikowski, editors, Medical Imaging Informatics (IMIA Yearbook of Medical Informatics). Schattauer Verlagsgesellschaft mbH, Stuttgart, 2002. ISBN: 3-7945-2193-5. [bibtex-entry]



220. A. Guimond, A. Roche, N. Ayache, and J. Meunier. Multimodal Brain Warping Using the Demons Algorithm and Adaptative Intensity Corrections. IEEE Transactions on Medical Imaging, 20(1):58-69, 2001. Keyword(s): registration, matching, deformations. [Abstract] [bibtex-entry]



221. J. Montagnat, H. Delingette, and N. Ayache. A review of deformable surfaces: topology, geometry and deformation. Image and Vision Computing, 19(14):1023-1040, December 2001. Keyword(s): journal, reconstruction. [bibtex-entry]



222. Sébastien Ourselin, Alexis Roche, Gérard Subsol, Xavier Pennec, and Nicholas Ayache. Reconstructing a 3D Structure from Serial Histological Sections. Image and Vision Computing, 19(1-2):25-31, January 2001. Keyword(s): registration, matching, histology. [bibtex-entry]



223. Alexis Roche, Xavier Pennec, Grégoire Malandain, and Nicholas Ayache. Rigid Registration of 3D Ultrasound with MR Images: a New Approach Combining Intensity and Gradient Information. IEEE Transactions on Medical Imaging, 20(10):1038-1049, October 2001. Keyword(s): registration, ultrasound, magnetic resonance, correlation ratio, robust estimation, multimodal. [Abstract] [bibtex-entry]



224. L Soler, H Delingette, G Malandain, J Montagnat, N Ayache, C Koehl, O Dourthe, B Malassagne, M Smith, D Mutter, and J Marescaux. Fully automatic anatomical, pathological, and functional segmentation from CT scans for hepatic surgery. Comput Aided Surg, 6(3):131-42, 2001. Keyword(s): Human, Image Processing Computer-Assisted, methods, Liver, anatomy & histology, Support Non-U.S. Gov't, Surgery Computer-Assisted, Tomography X-Ray Computed. [Abstract] [bibtex-entry]



225. N. Ayache. Imagerie et robotique médicales: du microscope informatique au simulateur de chirurgie. Technique et Science Informatiques, 19(1), January 2000. [bibtex-entry]



226. S. Cotin, H. Delingette, and N. Ayache. A Hybrid Elastic Model allowing Real-Time Cutting, Deformations and Force-Feedback for Surgery Training and Simulation. The Visual Computer, 16(8):437-452, 2000. Keyword(s): journal, simulation. [bibtex-entry]



227. J. Duncan and N. Ayache. Medical Image Analysis: Progress over two decades and the challenges ahead. IEEE Transactions on Pattern Analysis and Machine Intelligence, 22(1):85-106, 2000. [bibtex-entry]



228. K. Krissian, G. Malandain, N. Ayache, R. Vaillant, and Y. Trousset. Model-Based Detection of Tubular Structures in 3D Images. Computer Vision and Image Understanding, 80(2):130-171, 2000. Keyword(s): filtering, vessel detection, multiscale analysis, segmentation. [Abstract] [bibtex-entry]



229. A. Roche, G. Malandain, and N. Ayache. Unifying Maximum Likelihood Approaches in Medical Image Registration. International Journal of Imaging Systems and Technology, 11(1):71-80, 2000. Note: Special Issue on 3D Imaging. Keyword(s): registration, matching, similarity measures. [bibtex-entry]



230. L Soler, H Delingette, G Malandain, N Ayache, C Koehl, J M Clement, O Dourthe, and J Marescaux. An automatic virtual patient reconstruction from CT-scans for hepatic surgical planning. Stud Health Technol Inform, 70:316-22, 2000. Keyword(s): Computer Graphics, Computer Simulation, Hepatectomy, Human, Image Processing Computer-Assisted, Liver Diseases, radiography, Tomography X-Ray Computed, User-Computer Interface. [Abstract] [bibtex-entry]



231. Xavier Pennec, Nicholas Ayache, and Jean-Philippe Thirion. Landmark-based registration using features identified through differential geometry. In I. Bankman, editor, Handbook of Medical Imaging, chapter 31, pages 499-513. Academic Press, September 2000. Keyword(s): registration, matching, validation, uncertainty. [bibtex-entry]



232. N. Ayache and G. Subsol. El Cerebro in Cuatro Dimensiones. Mundo Cientifico, 203:30-33, July 1999. [bibtex-entry]



233. N. Ayache and G. Subsol. Le cerveau en quatre dimensions. La Recherche, 320:46-49, May 1999. [bibtex-entry]



234. S. Cotin, H. Delingette, and N. Ayache. Real-time elastic deformations of soft tissues for surgery simulation. IEEE Transactions on Visualization and Computer Graphics, 5(1):62-73, January-March 1999. Keyword(s): journal, simulation. [bibtex-entry]



235. Nicholas Ayache. L'analyse automatique des images médicales, état de l'art et perspectives. Annales de l'Institut Pasteur, 9(1):13-21, avril--juin 1998. Note: Numéro spécial sur les progrès récents de l'imagerie médicale. [bibtex-entry]



236. N. Ayache, S. Cotin, H. Delingette, J.-M. Clément, J. Marescaux, and M. Nord. Simulation of Endoscopic Surgery. Journal of Minimally Invasive Therapy and Allied Technologies (MITAT), 7(2):71-77, July 1998. Keyword(s): journal, simulation. [bibtex-entry]



237. Eric Bardinet, Laurent D. Cohen, and Nicholas Ayache. A parametric deformable model to fit unstructured 3D data. Computer Vision and Image Understanding, 71(1):39-54, 1998. [bibtex-entry]



238. Serge Benayoun and Nicholas Ayache. Dense non-rigid motion estimation in sequences of medical images using differential constraints. International Journal of Computer Vision, 26(1):25-40, 1998. Keyword(s): registration, matching, deformations, motion tracking. [bibtex-entry]



239. J. Declerck, J. Feldmar, and N. Ayache. Definition of a four-dimensional continuous planispheric transformation for the tracking and the analysis of left-ventricle motion. Medical Image Analysis, 2(2):197-213, June 1998. Keyword(s): Motion tracking, Heart, 4D. [bibtex-entry]



240. J Marescaux, J M Clement, V Tassetti, C Koehl, S Cotin, Y Russier, D Mutter, H Delingette, and N Ayache. Virtual reality applied to hepatic surgery simulation: the next revolution. Annals of Surgery, 228(5):627-34, November 1998. Keyword(s): Computer Simulation, Digestive System Surgical Procedures, methods, Image Processing Computer-Assisted, Liver, surgery, Support Non-U.S. Gov't, journal, simulation. [Abstract] [bibtex-entry]



241. J Marescaux, J M Clement, M Vix, Y Russier, V Tassetti, D Mutter, S Cotin, and N Ayache. [A new concept in surgery of the digestive tract: surgical procedure assisted by computer, from virtual reality to telemanipulation]. Chirurgie, 123(1):16-24, February 1998. Note: In french. Keyword(s): Anatomy Cross-Sectional, Computer Simulation, English Abstract, Forecasting, Hepatectomy, instrumentation, Human, Image Processing Computer-Assisted, instrumentation, Liver Neoplasms, surgery, Phantoms Imaging, Robotics, instrumentation, Surgical Procedures Operative, trends, User-Computer Interface. [Abstract] [bibtex-entry]



242. Xavier Pennec and Nicholas Ayache. A geometric algorithm to find small but highly similar 3D substructures in proteins. Bioinformatics, 14(6):516-522, 1998. Keyword(s): registration, matching, protein structure. [bibtex-entry]



243. Xavier Pennec and Nicholas Ayache. Uniform distribution, distance and expectation problems for geometric features processing. Journal of Mathematical Imaging and Vision, 9(1):49-67, July 1998. Note: A preliminary version appeared as INRIA Research Report 2820, March 1996. Keyword(s): statistics, geometry, Riemannian geometry. [bibtex-entry]



244. G. Subsol, J.-Ph. Thirion, and N. Ayache. A Scheme for Automatically Building 3D Morphometric Anatomical Atlases: application to a Skull Atlas. Medical Image Analysis, 2(1):37-60, 1998. Keyword(s): registration, matching, atlas, deformations, Algorithms, Anatomy Artistic, methods, Comparative Study, Craniofacial Abnormalities, pathology, Diagnosis Computer-Assisted, methods, Human, Medical Illustration, Skull, anatomy & histology. [Abstract] [bibtex-entry]



245. Nicholas Ayache, Stephane Cotin, and Hervé Delingette. Surgery Simulation with visual and haptic feedback. In Y. Shirai and S. Hirose, editors, Robotics Research, the Eigth International Symposium, pages 311-316. Springer, 1998. Keyword(s): workshop, simulation. [bibtex-entry]



246. S. Cotin, H. Delingette, N. Ayache, J.M. Clement, J. Marescaux, and M. Nord. Simulation Active de Chirurgie Endoscopique. Revue Européenne de Technologie Biomédicale (RBM), 19(5):167-172, 1997. Keyword(s): journal, simulation. [bibtex-entry]



247. J. Feldmar, N. Ayache, and F. Betting. 3D-2D projective registration of free-form curves and surfaces. Journal of Computer Vision and Image Understanding, 65(3):403-424, 1997. [bibtex-entry]



248. J. Feldmar, J. Declerck, G. Malandain, and N. Ayache. Extension of the ICP Algorithm to Non-Rigid Intensity-Based Registration of 3D Volumes. Computer Vision and Image Understanding, 66(2):193-206, May 1997. Keyword(s): registration, matching, deformations. [bibtex-entry]



249. André Guéziec, Xavier Pennec, and Nicholas Ayache. Medical Image Registration using Geometric Hashing. IEEE Computational Science and Engineering, 4(4):29-41, Oct-Dec 1997. Note: Special issue on Geometric Hashing. Keyword(s): registration, matching. [bibtex-entry]



250. J Marescaux, J M Clement, M Nord, Y Russier, V Tassetti, D Mutter, S Cotin, and N Ayache. [A new concept in digestive surgery: the computer assisted surgical procedure, from virtual reality to telemanipulation]. Bull Acad Natl Med, 181(8):1609-21, November 1997. Keyword(s): review, survey, review, survey, Computer Simulation, Digestive System Surgical Procedures, English Abstract, Human, Telemedicine, User-Computer Interface. [Abstract] [bibtex-entry]



251. L Picard, E Maurincomme, M Soderman, J Feldmar, R Anxionnat, L Launay, K Ericson, G Malandain, S Bracard, E Kerrien, O Flodmark, and N Ayache. X-ray angiography in stereotactic conditions: techniques and interest for interventional neuroradiology. Stereotact Funct Neurosurg, 68(1-4 Pt 1):117-20, 1997. Keyword(s): Angiography Digital Subtraction, methods, Carotid Arteries, anatomy & histology, Cerebral Angiography, methods, Human, Image Enhancement, Magnetic Resonance Angiography, methods, Radiology Interventional, methods, Stereotaxic Techniques. [Abstract] [bibtex-entry]



252. N Ayache. Analyzing 3D images of the brain. NeuroImage, 4(3 Pt 2), December 1996. Keyword(s): Brain Mapping, Computer Graphics, Human, Image Processing Computer-Assisted, Robotics, Software, User-Computer Interface. [bibtex-entry]



253. E. Bardinet, L.D. Cohen, and N. Ayache. Tracking and motion analysis of the left ventricle with deformable superquadrics. Medical Image Analysis, 1(2), 1996. Note: Also INRIA Research Report RR-2797, INRIA Sophia-Antipolis, February 1996. [bibtex-entry]



254. S Cotin, H Delingette, M Bro-Nielsen, N Ayache, J M Clement, V Tassetti, and J Marescaux. Geometric and physical representations for a simulator of hepatic surgery. Stud Health Technol Inform, 29:139-51, 1996. Keyword(s): Computer Simulation, Education Medical, Human, Image Processing Computer-Assisted, Liver, anatomy & histology, Support Non-U.S. Gov't, User-Computer Interface. [Abstract] [bibtex-entry]



255. J. Feldmar and N. Ayache. Rigid, Affine and Locally Affine Registration of Free-Form Surfaces. International Journal of Computer Vision, 18(2):99-120, May 1996. Keyword(s): matching, registration, deformations. [bibtex-entry]



256. C. Nastar and N. Ayache. Frequency-based Non-rigid Motion Analysis: Application to Four Dimensional Medical Images. IEEE Transactions on Pattern Analysis and Machine Intelligence, 18(11):1067-1079, novembre 1996. [bibtex-entry]



257. G. Subsol, J.-Ph. Thirion, and N. Ayache. Construction automatique d'atlas anatomiques morphométriques à partir d'images médicales tridimensionnelles : application à un atlas du crâne. Traitement du signal, 13(6):651-674, 1996. [bibtex-entry]



258. N. Ayache. Medical Computer Vision, Virtual Reality and Robotics. Image and Vision Computing, 13(4):295-313, May 1995. [bibtex-entry]



259. N. Ayache, P. Cinquin, I. Cohen, L. D. Cohen, I. L. Herlin, F. Leitner, and O. Monga. Segmentation of Complex 3D medical Objects: a challenge and a requirement for computer assisted surgery planning and performing. In Computer Integrated Surgery. MIT-Press, 1995. [bibtex-entry]



260. A. Guéziec and N. Ayache. Smoothing and Matching of 3-D Space Curves. International Journal of Computer Vision, 12(1):79-104, January 1994. [bibtex-entry]



261. G. Malandain, G. Bertrand, and N. Ayache. Topological segmentation of discrete surfaces. International Journal of Computer Vision, 10(2):183-197, 1993. [bibtex-entry]



262. N. Ayache. Computer Vision Applied to 3D Medical Images: Results, Trends and Future Challenges. In T. Kanade and R. Paul, editors, 6th Int. Symposium on Robotics Research. MIT-Press, 1993. Note: Available as INRIA Research Report 2050. [bibtex-entry]



263. Chahab Nastar and Nicholas Ayache. A New Physically Based Model for Efficient Tracking and Analysis of Deformations. In Geometric Reasoning - from Perception to Action, Lecture notes in computer science. Springer, 1993. [bibtex-entry]



264. I. Cohen, L.D. Cohen, and N. Ayache. Using deformable surfaces to segment 3-D images and infer differential structures. Computer Vision, Graphics, and Image Processing: Image Understanding, 56(2):242-263, 1992. [bibtex-entry]



265. A. Guéziec and N. Ayache. Lissage et reconnaissance de courbes gauches bruitées. Traitement du signal, 9(6), 1992. [bibtex-entry]



266. I.L. Herlin and N. Ayache. Extraction de traits caractéristiques dans des séquences d'images échocardiographiques. Technique et Science Informatiques, 11(4), 1992. [bibtex-entry]



267. Isabelle L. Herlin and Nicholas Ayache. Feature Extraction and analysis methods for sequences of ultrasound images. Image and Vision Computing, 10(10):673-682, 1992. [bibtex-entry]



268. O. Monga, N. Ayache, and P. Sander. Using uncertainty to link edge detection and local surface modelling. Image and Vision Computing, 10(6):673-682, Août 1992. [bibtex-entry]



269. Olivier Monga, Peter Sander, and Nicholas Ayache. From Voxel to Intrinsic Surface Features. Image and Vision Computing, 10(6):403-417, 1992. [bibtex-entry]



270. N. Ayache, I. Cohen, and I.L. Herlin. Medical Image Tracking. In Active Vision, Andrew Blake and Alan Yuille, chapter 17. MIT Press, 1992. Note: In press. [bibtex-entry]



271. Nicholas Ayache and Francis Lustman. Trinocular Stereovision for Robotics. IEEE Transactions on Pattern Analysis and Machine Intelligence, 13(1), 1991. [bibtex-entry]



272. Nicholas Ayache and Olivier Faugeras. Maintaining Representations of the Environment of a Mobile Robot. International Journal of Robotics and Automation, 5(6):804-819, 1989. [bibtex-entry]



273. Nicholas Ayache and Olivier Faugeras. Building, registrating and fusing noisy visual maps. International Journal of Robotics Research, 7(6):45-65, 1988. [bibtex-entry]



274. Nicholas Ayache and Bernard Faverjon. Efficient Registration of stereo images by matching graph descriptions of edge segments. International Journal of Computer Vision, pp 107-131, 1987. [bibtex-entry]



275. Nicholas Ayache and Olivier Faugeras. HYPER: a new approach for the recognition and positioning of 2D objects. IEEE Transactions on Pattern Analysis and Machine Intelligence, 8(1):44-54, 1986. [bibtex-entry]

1. Théodore Soulier, Mariem Hamzaoui, Milena Sales Pitombeira, Daniele De Paula Faria, Arya Yazdan-Panah, Matteo Tonietto, Claire Leroy, Michel Bottlaender, Benedetta Bodini, Ninon Burgos, Nicholas Ayache, Olivier Colliot, and Bruno Stankoff. Generating PET-derived maps of myelin content from clinical MRI using curricular discriminator training in generative adversarial networks. In SPIE Medical Imaging, San Diego, United States, February 2024. Keyword(s): Multiple Sclerosis, Magnetic Resonance Imaging, Positron Emission Tomography, Myelin, Generative Adversarial Network, Curriculum Learning, Image synthesis. [bibtex-entry]



2. Hind Dadoun, Hervé Delingette, Anne-Laure Rousseau, Eric de Kerviler, and Nicholas Ayache. Joint representation learning from french radiological reports and ultrasound images. In IEEE ISBI 2023 - International Symposium on Biomedical Imaging, Cartagena de Indias, Colombia, April 2023. IEEE. Keyword(s): multimodal learning deep clustering natural language processing ultrasound examinations kidneys, multimodal learning, deep clustering, natural language processing, ultrasound examinations, kidneys. [bibtex-entry]



3. Zhijie Fang, Hervé Delingette, and Nicholas Ayache. Anatomical Landmark Detection for Initializing US and MR Image Registration. In MICCAI ASMUS 2023 - 4th International Workshop of Advances in Simplifying Medical UltraSound - a workshop held in conjunction with MICCAI 2023, the 26th International Conference on Medical Image Computing and Computer Assisted Intervention, Vancouver, Canada, October 2023. Keyword(s): Landmark detection, Image-guided intervention, Convolutional neural network and Prostate cancer. [bibtex-entry]



4. Dimitri Hamzaoui, Sarah Montagne, Raphaele Renard-Penna, Nicholas Ayache, and Hervé Delingette. MOrphologically-aware Jaccard-based ITerative Optimization (MOJITO) for Consensus Segmentation. In MICCAI Workshop UNSURE 2022: Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, Singapore, Singapore, September 2022. Keyword(s): Consensus Algorithm, Segmentation 2D et 3D, Jaccard distance, STAPLE. [bibtex-entry]



5. Huiyu Li, Nicholas Ayache, and Hervé Delingette. Data Stealing Attack on Medical Images: Is it Safe to Export Networks from Data Lakes?. In Springer Nature, editor, DeCaF 2022 - International Workshop on Distributed, Collaborative, and Federated Learning, volume LNCS - 13573 of Distributed, Collaborative, and Federated Learning, and Affordable AI and Healthcare for Resource Diverse Global Health Third MICCAI Workshop, DeCaF 2022, and Second MICCAI Workshop, FAIR 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18 and 22, 2022, Proceedings, Singapore, Singapore, September 2022. Note: Best Paper Award. Keyword(s): Data Stealing Attack, Privacy, Medical Images. [bibtex-entry]



6. Hind Dadoun, Hervé Delingette, Anne-Laure Rousseau, Eric de Kerviler, and Nicholas Ayache. Combining Bayesian and Deep Learning Methods for the Delineation of the Fan in Ultrasound Images. In ISBI 2021 - 18th IEEE International Symposium on Biomedical Imaging, Nice, France, April 2021. Keyword(s): Ultrasound imaging, Deep Learning, Ultrasound fan area detection, pre-processing. [bibtex-entry]



7. Mariem Hamzaoui, Théodore Soulier, Arya Yazdan-Panah, Marius Schmidt- Mengin, Olivier Colliot, Nicholas Ayache, and Bruno Stankoff. Intensity based Regions Of Interest (ROIs) preselection followed by Convolutional Neuronal Network (CNN) based segmentation for new lesions detection in Multiple Sclerosis. In MICCAI 2021 MSSEG2 - 24th International Conference on Medical Image Computing and Computer Assisted Intervention - Challenge on multiple sclerosis new lesions segmentation challenge using a data management and processing infrastructure - MICCAI-MSSEG-2, Strasbourg, France, September 2021. Keyword(s): Classical image processing, CNNs, Hybrid approach. [bibtex-entry]



8. Marius Schmidt-Mengin, Arya Yazdan-Panah, Théodore Soulier, Mariem Hamzaoui, Nicholas Ayache, and Olivier Colliot. Segmentation of new multiple sclerosis lesions on FLAIR MRI using online hard example mining. In MICCAI-MSSEG-2 - 25th International Conference on Medical Image Computing and Computer Assisted Intervention - challenge on multiple sclerosis new lesions segmentation challenge using a data management and processing infrastructure, Strasbourg, France, September 2021. Keyword(s): Segmentation, Deep learning, Hard example mining, Multiple Sclerosis, MRI. [bibtex-entry]



9. Paul Tourniaire, Marius Ilie, Paul Hofman, Nicholas Ayache, and Hervé Delingette. Attention-based Multiple Instance Learning with Mixed Supervision on the Camelyon16 Dataset. In MICCAI 2021 - Workshop on Computational Pathology, volume 156 of Proceedings of Machine Learning Research, Strasbourg, France, pages 216-226, September 2021. PMLR. Keyword(s): Attention Mechanism, Mixed Supervision, Histopathology. [bibtex-entry]



10. Fanny Orlhac, Thibaut Cassou-Mounat, Jean-Yves Pierga, Marie Luporsi, Christophe Nioche, Charles Bouveyron, Nicholas Ayache, Nina Jehanno, Alain Livartowski, and Irene Buvat. Can we identify ''twin patients'' to predict response to neoadjuvant chemotherapy in breast cancer?. In SNMMI Annual Meeting, Virtual Meeting, United States, July 2020. [bibtex-entry]



11. Fanny Orlhac, Anne-Capucine Rollet, Irène Buvat, Jacques Darcourt, Véronique Bourg, Christophe Nioche, Charles Bouveyron, Nicholas Ayache, and Olivier Humbert. Identifying a reliable radiomic signature from scarce data: illustration for 18F-FDOPA PET images in glioblastoma patients. In EANM Annual Meeting - Annual Meeting of the European Association of Nuclear Medicine, Virtual Meeting, Austria, October 2020. [bibtex-entry]



12. Luigi Antelmi, Nicholas Ayache, Philippe Robert, and Marco Lorenzi. Sparse Multi-Channel Variational Autoencoder for the Joint Analysis of Heterogeneous Data. In ICML 2019 - 36th International Conference on Machine Learning, Long Beach, United States, June 2019. [bibtex-entry]



13. Nicholas Ayache. AI and Healthcare: towards a Digital Twin?. In 5th International Symposium on Multidiscplinary Computational Anatomy, Fukuoka, Japan, March 2019. Note: Talk given by M. Nicholas Ayache at the MCA 2019. [bibtex-entry]



14. Julian Krebs, Tommaso Mansi, Nicholas Ayache, and Hervé Delingette. Probabilistic Motion Modeling from Medical Image Sequences: Application to Cardiac Cine-MRI. In STACOM 2019 - 10th Workshop on Statistical Atlases and Computational Modelling of the Heart, Shenzhen, China, October 2019. Note: Probabilistic Motion Model, Motion Tracking, Temporal Super-Resolution, Diffeomorphic Registration, Temporal Variational Autoencoder. [bibtex-entry]



15. Clement Abi Nader, Nicholas Ayache, Philippe Robert, and Marco Lorenzi. Alzheimer's Disease Modelling and Staging through Independent Gaussian Process Analysis of Spatio-Temporal Brain Changes. In Machine Learning in Clinical Neuroimaging (MLCN) workshop, Granada, Spain, September 2018. Keyword(s): Alzheimer's Disease, Disease Progression Modelling, Gaussian Process. [bibtex-entry]



16. Luigi Antelmi, Nicholas Ayache, Philippe Robert, and Marco Lorenzi. Multi-Channel Stochastic Variational Inference for the Joint Analysis of Heterogeneous Biomedical Data in Alzheimer's Disease. In Understanding and Interpreting Machine Learning in Medical Image Computing Applications, volume 11038 of LNCS, Granada, Spain, pages 15-23, September 2018. [bibtex-entry]



17. Julian Krebs, Tommaso Mansi, Boris Mailhé, Nicholas Ayache, and Hervé Delingette. Unsupervised Probabilistic Deformation Modeling for Robust Diffeomorphic Registration. In Deep Learning in Medical Image Analysis (MICCAI workshop), Granada, Spain, September 2018. Keyword(s): Image registration, Deep learning, Medical imaging analysis. [bibtex-entry]



18. Fanny Orlhac, Charles Bouveyron, Thierry Pourcher, Lun Jing, Jean-Marie Guigonis, Jacques Darcourt, Nicholas Ayache, and Olivier Humbert. Identification des cancers mammaires triple-négatifs : analyse statistique de variables radiomiques issues des images TEP et de variables métabolomiques. In 2018 - 4èmes Journées Francophones de Médecine Nucléaire, volume 42 of Médecine Nucléaire, Lille, France, pages 169, May 2018. Keyword(s): Analyse de texture, Cancer du sein, Hétérogénéité tumorale, Traitement des images, Triple-négatif. [bibtex-entry]



19. Fanny Orlhac, Olivier Humbert, Sarah Boughdad, Maud Lasserre, Michael Soussan, Christophe Nioche, Nicholas Ayache, Jacques Darcourt, Frédérique Frouin, and Irène Buvat. Validation d'une méthode d'harmonisation des mesures SUV et des variables radiomiques pour les études TEP multicentriques rétrospectives. In 2018 - 4èmes Journées Francophones de Médecine Nucléaire, volume 42, Lille, France, pages 170, May 2018. Keyword(s): Etude multicentrique, Normalisation, Quantification, Analyse de texture, Hétérogénéité tumorale. [bibtex-entry]



20. Fanny Orlhac, Olivier Humbert, Sarah Boughdad, Maud Lasserre, Michael Soussan, Christophe Nioche, Nicholas Ayache, Jacques Darcourt, Frédérique Frouin, and Irène Buvat. Validation of a harmonization method to correct for SUV and radiomic features variability in multi-center studies. In SNMMI Annual Meeting, volume 59, Philadelphia, United States, pages 288, June 2018. [bibtex-entry]



21. Fanny Orlhac, Olivier Humbert, Thierry Pourcher, Lun Jing, Jean-Marie Guigonis, Jacques Darcourt, Nicholas Ayache, and Charles Bouveyron. Analyse statistique de données radiomiques et métabolomiques : prédiction des lésions mammaires triple-négatives. In 12ème Conférence Francophone d'Epidémiologie Clinique (EPICLIN) et 25èmes Journées des statisticiens des Centre de Lutte Contre le Cancer (CLCC), volume 66 of Revue d'épidémiologie et de santé publique, Nice, France, pages S180-S181, May 2018. Keyword(s): Métabolomique, Analyse statistique, Analyse discriminante, Sélection de variables, Radiomique. [bibtex-entry]



22. Fanny Orlhac, Olivier Humbert, Thierry Pourcher, Lun Jing, Jean-Marie Guigonis, Jacques Darcourt, Nicholas Ayache, and Charles Bouveyron. Statistical analysis of PET radiomic features and metabolomic data: prediction of triple-negative breast cancer. In SNMMI Annual Meeting, volume 59, Philadelphia, United States, pages 1755, June 2018. [bibtex-entry]



23. Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Nicholas Ayache, Bruno Stankoff, and Olivier Colliot. Learning Myelin Content in Multiple Sclerosis from Multimodal MRI through Adversarial Training. In MICCAI 2018 -- 21st International Conference On Medical Image Computing & Computer Assisted Intervention, volume 11072, Granada, Spain, September 2018. [bibtex-entry]



24. Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Olivier Colliot, Bruno Stankoff, and Nicholas Ayache. FLAIR MR Image Synthesis By Using 3D Fully Convolutional Networks for Multiple Sclerosis. In ISMRM-ESMRMB 2018 - Joint Annual Meeting, Paris, France, pages 1-6, June 2018. [bibtex-entry]



25. Sophie Giffard-Roisin, Hervé Delingette, Thomas Jackson, Lauren Fovargue, Jack Lee, Aldo Rinaldi, Nicholas Ayache, Reza Razavi, and Maxime Sermesant. Sparse Bayesian Non-linear Regression for Multiple Onsets Estimation in Non-invasive Cardiac Electrophysiology. In Mihaela Pop, editor, Functional imaging and modelling of the heart 2017, Functional imaging and modelling of the heart 2017, Toronto, Canada, pages 230-238, June 2017. Springer International Publishing. Note: Best paper award FIMH 2017, category: Electrophysiology. Keyword(s): ECG Imaging, Cardiac Electrophysiology, Relevance Vector Machine, Personalisation. [bibtex-entry]



26. Julian Krebs, Tommaso Mansi, Hervé Delingette, Li Zhang, Florin C Ghesu, Shun Miao, Andreas Maier, Nicholas Ayache, Rui Liao, and Ali Kamen. Robust non-rigid registration through agent-based action learning. In Medical Image Computing and Computer Assisted Interventions (MICCAI), Medical Image Computing and Computer Assisted Intervention -- MICCAI 2017, Quebec, Canada, pages 344-352, September 2017. Springer International Publishing. Keyword(s): reinforcement learning, Image registration. [bibtex-entry]



27. Roch Molléro, Hervé Delingette, Manasi Datar, Tobias Heimann, Jakob Hauser, Dilveer Panesar, Alexander Jones, Andrew Taylor, Marcus Kelm, Titus Kuehne, Marcello Chinali, Gabriele Rinelli, Nicholas Ayache, Xavier Pennec, and Maxime Sermesant. Longitudinal Analysis using Personalised 3D Cardiac Models with Population-Based Priors: Application to Paediatric Cardiomyopathies. In Medical Image Computing and Computer Assisted Intervention (MICCAI), Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2017, Québec City, Canada, pages 350-358, September 2017. Springer International Publishing. [bibtex-entry]



28. Roch Molléro, Jakob Hauser, Xavier Pennec, Manasi Datar, Hervé Delingette, Alexander Jones, Nicholas Ayache, Tobias Heimann, and Maxime Sermesant. Longitudinal Parameter Estimation in 3D Electromechanical Models: Application to Cardiovascular Changes in Digestion. In FIMH 2017 - 9th international conference on Functional Imaging and Modeling of the Heart, Functional Imaging and Modelling of the Heart, Toronto, Canada, pages 432-440, June 2017. Springer International Publishing. [bibtex-entry]



29. Thomas Demarcy, Clair Vandersteen, Dan Gnansia, Charles Raffaelli, Hervé Delingette, Nicholas Ayache, and Nicolas Guevara. Estimation de la position post-implantation cochléaire de l'électrode à partir d'images tomodensitométriques cliniques. In 123ème Congrès de la Société Française d'Oto-Rhino-Laryngologie et de Chirurgie de la Face et du Cou, Annales françaises d'Oto-rhino-laryngologie et de Pathologie Cervico-faciale, Paris, France, October 2016. Congrès de la Société Française d'Oto-Rhino-Laryngologie et de Chirurgie de la Face et du Cou. Keyword(s): Cochlear Implant, Computed Tomography. [bibtex-entry]



30. Thomas Demarcy, Clair Vandersteen, Charles Raffaelli, Dan Gnansia, Nicolas Guevara, Nicholas Ayache, and Hervé Delingette. Uncertainty Quantification of Cochlear Implant Insertion from CT Images. In Raj Shekhar, Stefan Wesarg, Miguel Angel Gonzalez Ballester, Klaus Drechsler, Yoshinobu Sato, Marius Erdt, Marius George Linguraru, and Cristina Oyarzun Laura, editors, 5th International Workshop on Clinical Image-Based Procedures - CLIP 2016, Held in Conjunction with MICCAI 2016, volume 9958 of Lecture Notes in Computer Science, Athens, Greece, pages 27-35, October 2016. Springer. Keyword(s): cochlear implant, uncertainty quantification, shape modeling. [bibtex-entry]



31. Sophie Giffard-Roisin, Lauren Fovargue, Jessica Webb, Roch Molléro, Jack Lee, Hervé Delingette, Nicholas Ayache, Reza Razavi, and Maxime Sermesant. Estimation of Purkinje Activation from ECG: an Intermittent Left Bundle Branch Block Study. In 7th International Statistical Atlases and Computational Modeling of the Heart (STACOM) Workshop, Held in Conjunction with MICCAI 2016, Lecture Notes in Computer Science, Athens, Greece, October 2016. Note: In press. Keyword(s): Electrophysiology, Electrophysiological Model, Forward EP Model, Parameter Estimation, Purkinje System. [bibtex-entry]



32. Roch Molléro, Xavier Pennec, Hervé Delingette, Nicholas Ayache, and Maxime Sermesant. A Multiscale Cardiac Model for Fast Personalisation and Exploitation. In MICCAI 2016 - Medical Image Computing and Computer Assisted Intervention, volume 9902 of MICCAI 2016, Lecture Notes in Computer Science, Athens, Greece, pages 174-182, October 2016. [bibtex-entry]



33. Chloé Audigier, Tommaso Mansi, Hervé Delingette, Saikiran Rapaka, Tiziano Passerini, Viorel Mihalef, Raoul Pop, Michele Diana, Luc Soler, Ali Kamen, Dorin Comaniciu, and Nicholas Ayache. Challenges to Validate Multi-physics Model of Liver Tumor Radiofrequency Ablation from Pre-clinical Data. In Computational Biomechanics for Medicine X, Munich, Germany, pages 29-40, October 2015. [bibtex-entry]



34. Héloïse Bleton, Jan Margeta, Herve Lombaert, Hervé Delingette, and Nicholas Ayache. Myocardial Infarct Localization using Neighborhood Approximation Forests. In Statistical Atlases and Computational Modeling of the Heart (STACOM 2015), Munich, Germany, October 2015. Keyword(s): Machine Learning, Neighbourhood Approximation Forests, myocardial infarction, wall thickness. [bibtex-entry]



35. Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Alexandre Routier, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, and Stanley Durrleman. Joint Morphometry of Fiber Tracts and Gray Matter structures using Double Diffeomorphisms. In IPMI - Information Processing in Medical Imaging, volume 9123 of Lecture Notes in Computer Science, Isle of Skye, United Kingdom, pages 275-287, June 2015. Keyword(s): diffeomorphism, morphometry, atlas, structural connectivity, shape. [bibtex-entry]



36. Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Alexandre Routier, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, and Stanley Durrleman. Unified analysis of shape and structural connectivity of neural pathways. In Organisation for Human Brain Mapping, Honolulu, United States, 2015. [bibtex-entry]



37. Vikash Gupta, Grégoire Malandain, Nicholas Ayache, and Xavier Pennec. A framework for creating population specific multimodal brain atlas using clinical T1 and diffusion tensor images. In MICCAI 2015 Workshop on Computational Diffusion MRI (CDMRI'15), Computational Diffusion MRI, Munich, Germany, pages 99-108, October 2015. Keyword(s): Multimodal brain atlas, Probabilistic white matter parcel-lation map, HIV, DTI-T1 brain template. [bibtex-entry]



38. Bishesh Khanal, Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. Simulating Patient Specific Multiple Time-point MRIs From a Biophysical Model of Brain Deformation in Alzheimer's Disease. In Workshop on Computational Biomechanics for Medicine - X, Computational Biomechanics for Medicine: Imaging, Modeling and Computing, Munich, France, pages 167-176, October 2015. Springer International Publishing. Keyword(s): biophysical modeling, Alzheimer's disease, biomechanical simulation, MRI, longitudinal MRI. [bibtex-entry]



39. Herve Lombaert, Michael Arcaro, and Nicholas Ayache. Brain Transfer: Spectral Analysis of Cortical Surfaces and Functional Maps. In Sebastien Ourselin, Daniel C. Alexander, Carl-Fredrik Westin, and M. Jorge Cardoso, editors, Information Processing in Medical Imaging (IPMI 2015), volume 9123 of Lecture Notes in Computer Science, Scotland, United Kingdom, pages 474-487, July 2015. Springer. [bibtex-entry]



40. Herve Lombaert, Michael Arcaro, Sabine Kastner, and Nicholas Ayache. Brain Transfer for the Analysis of Cortical Data. In Society for Neuroscience (SfN), Chicago, United States, October 2015. [bibtex-entry]



41. Herve Lombaert, Antonio Criminisi, and Nicholas Ayache. Spectral Forests: Learning of Surface Data, Application to Cortical Parcellation. In Nassir Navab, Joachim Hornegger, William M. Wells, and Alejandro F. Frangi, editors, Medical Image Computingand Computer Assisted Intervention (MICCAI 2015), volume 9349 of Lecture Notes in Computer Science, Munich, Germany, pages 547-555, October 2015. Springer. [bibtex-entry]



42. Matthieu Lê, Hervé Delingette, Jayashree Kalpathy-Cramer, Elizabeth R Gerstner, Tracy Batchelor, Jan Unkelbach, and Nicholas Ayache. Bayesian Personalization of Brain Tumor Growth Model. In Alejandro F. Frangi, Joachim Hornegger, Nassir Navab, and William M. Wells, editors, MICCAI - Medical Image Computing and Computer Assisted Intervention - 2015, volume 9350 of Lecture Notes in Computer Science - LNCS, Munich, Germany, pages 424-432, October 2015. Springer. Keyword(s): Glioma Modeling, Bayesian, Personalization. [bibtex-entry]



43. Matthieu Lê, Jan Unkelbach, Nicholas Ayache, and Hervé Delingette. GPSSI: Gaussian Process for Sampling Segmentations of Images. In Alejandro F. Frangi, Joachim Hornegger, Nassir Navab, and William M. Wells, editors, MICCAI - Medical Image Computing and Computer Assisted Intervention - 2015, volume 9351 of Lecture Notes in Computer Science - LNCS, Munich, Germany, pages 38-46, October 2015. Springer. Keyword(s): Sampling, Gaussian process, Radiotherapy, Segmentation. [bibtex-entry]



44. Jessie Mahé, Nicolas Linard, Marzieh Kohandani Tafreshi, Tom Vercauteren, Nicholas Ayache, Francois Lacombe, and Remi Cuingnet. Motion-Aware Mosaicing for Confocal Laser Endomicroscopy. In Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015, volume 9349, Munich, Germany, pages 447-454, October 2015. [bibtex-entry]



45. Roch Molléro, Dominik Neumann, Marc-Michel Rohé, Manasi Datar, Herve Lombaert, Nicholas Ayache, Dorin Comaniciu, Olivier Ecabert, Marcello Chinali, Gabriele Rinelli, Xavier Pennec, Maxime Sermesant, and Tommaso Mansi. Propagation of Myocardial Fibre Architecture Uncertainty on Electromechanical Model Parameter Estimation: A Case Study. In Functional Imaging and Modeling of the Heart, LNCS., 8th International Conference, FIMH 2015, Maastricht, The Netherlands, June 25-27, 2015. Proceedings, Maastricht, Netherlands, pages 448-456, June 2015. [bibtex-entry]



46. Anant S. Vemuri, Stéphane Nicolau, Jacques Marescaux, Luc Soler, and Nicholas Ayache. Automatic View-Point Selection for Inter-Operative Endoscopic Surveillance. In Medical Content-based Retrieval for Clinical Decision Support, Munich, Germany, pages 1-8, October 2015. Tanveer Syeda-Mahmood and Hayit Greenspan and Anant Madabhushi. Keyword(s): Computer assisted intervention, Endoscopic Image classification, Endoluminal surgery, Barrett's Oesophagus. [bibtex-entry]



47. Chloé Audigier, Tommaso Mansi, Hervé Delingette, Saikiran Rapaka, Viorel Mihalef, Daniel Carnegie, Emad Boctor, Michael Choti, Ali Kamen, Dorin Comaniciu, and Nicholas Ayache. Parameter Estimation For Personalization of Liver Tumor Radiofrequency Ablation. In MICCAI Workshop on Abdominal Imaging -- Computational and Clinical Applications, Boston, United States, September 2014. [bibtex-entry]



48. Rocio Cabrera Lozoya, Jan Margeta, Loic Le Folgoc, Yuki Komatsu, Berte Benjamin, Jatin Relan, Hubert Cochet, Michel Haïssaguerre, Pierre Jais, Nicholas Ayache, and Maxime Sermesant. Confidence-based Training for Clinical Data Uncertainty in Image-based Prediction of Cardiac Ablation Targets. In bigMCV Workshop MICCAI 2014, Boston, United States, September 2014. [bibtex-entry]



49. Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Fabrizio de Vico Fallani, Mario Chavez, Sophie Lecomte, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, and Stanley Durrleman. A Prototype Representation to Approximate White Matter Bundles with Weighted Currents. In MICCAI 2014 - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Boston, United States, September 2014. [bibtex-entry]



50. Bishesh Khanal, Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. A Biophysical Model of Shape Changes due to Atrophy in the Brain with Alzheimer's Disease. In P. GOLLAND, N. HATA, C. BARILLOT, J. HORNEGGER, and R. HOWE, editors, MICCAI 2014 - 17th International Conference Medical Image Computing and Computer-Assisted Intervention, volume 8674 of LNCS - Lecture Notes in Computer Science, Springer, Boston, United States, pages 41-48, September 2014. Springer. Keyword(s): Alzheimer's disease, Biophysical model, Atrophy model, Atrophy simulation, Longitudinal modeling. [bibtex-entry]



51. Marzieh Kohandani Tafreshi, Virendra Joshi, Alexander Meining, Charles Lightdale, Marc Giovannini, Julien Dauguet, Nicholas Ayache, and Barbara André. Smart Atlas for Supporting the Interpretation of probe-based Confocal Laser Endomicroscopy (pCLE) of Biliary Strictures: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition. In Digestive Disease Week (DDW 2014), Chicago, United States, May 2014. [bibtex-entry]



52. Marzieh Kohandani Tafreshi, Yan-Qing Li, Rapat Pittayanon, Douglas Pleskow, Virendra Joshi, Philip Chiu, Julien Dauguet, Nicholas Ayache, and Barbara André. Smart Atlas for Supporting the Interpretation of probe-based Confocal Laser Endomicroscopy (pCLE) of Gastric Lesions: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition. In Digestive Disease Week (DDW 2014), Chicago, United States, May 2014. [bibtex-entry]



53. Marzieh Kohandani Tafreshi, Nicolas Linard, Barbara André, Nicholas Ayache, and Tom Vercauteren. Semi-automated Query Construction for Content-based Endomicroscopy Video Retrieval. In Medical Image Computing and Computer Assisted Intervention (MICCAI), Boston, United States, September 2014. Keyword(s): Microscopic imaging, Biological Imaging, Abdominal imaging, Optical imaging, Machine learning, Database retrieval and data mining, Computer vision, Minimally invasive procedure, Pathology, Intraoperative imaging, Endoscopic imaging. [bibtex-entry]



54. Marzieh Kohandani Tafreshi, Bertrand Napoléon, Anne-Isabelle Lemaistre, Marc Giovannini, Virendra Joshi, Julien Dauguet, Nicholas Ayache, and Barbara André. Smart Atlas for Supporting the Interpretation of needle-based Confocal Laser Endomicroscopy (nCLE) of Pancreatic Cysts: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition. In Digestive Disease Week (DDW 2014), Chicago, United States, May 2014. [bibtex-entry]



55. Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, and Nicholas Ayache. Sparse Bayesian Registration. In Polina Golland, Nobuhiko Hata, Christian Barillot, Joachim Hornegger, and Robert Howe, editors, MICCAI - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, volume 8673 of LNCS - Lecture Notes in Computer Science, Springer, Boston, United States, pages 235-242, September 2014. Springer. Keyword(s): Sparse, Bayesian, Registration, Automatic Relevance Determination, MRI. [bibtex-entry]



56. Herve Lombaert, Darko Zikic, Antonio Criminisi, and Nicholas Ayache. Laplacian Forests: Semantic Image Segmentation by Guided Bagging. In Polina Golland, Nobuhiko Hata, Christian Barillot, Joachim Hornegger, and Robert Howe, editors, MICCAI 2014 - 17th International Conference Medical Image Computing and Computer-Assisted Intervention, volume 8674 of LNCS - Lecture Notes in Computer Science, Boston, United States, September 2014. Springer. [bibtex-entry]



57. Marco Lorenzi, Xavier Pennec, Nicholas Ayache, and (adni) For The Alzheimer'S Disease Neuroimaging Initiative. Regional flux analysis of longitudinal atrophy in Alzheimer's disease. In Alzheimer's Association International Conference, Copenhagen, Denmark, July 2014. Note: Oral podium presentation. [bibtex-entry]



58. Matthieu Lê, Hervé Delingette, Jayashree Kalpathy-Cramer, Elisabeth Gerstner, Helen A. Shih, Tracy Batchelor, Jan Unkelbach, and Nicholas Ayache. Multimodal Analysis of Vasogenic Edema in Glioblastoma Patients for Radiotherapy Planning. In Workshop Image-Guided Adaptive Radiation Therapy, Boston, United States, September 2014. [bibtex-entry]



59. Jan Margeta, Antonio Criminisi, Daniel C. Lee, and Nicholas Ayache. Recognizing cardiac magnetic resonance acquisition planes. In MIUA - Medical Image Understanding and Analysis Conference - 2014, London, United Kingdom, July 2014. Reyes-Aldasoro, Constantino Carlos and Slabaugh, Gregory. Keyword(s): random forests, cardiac MR. [bibtex-entry]



60. Anant S. Vemuri, Adrien Sportes, Stéphane Nicolau, Jacques Marescaux, Nicholas Ayache, and Luc Soler. Video Synchronization: An Approach to Biopsy Site Re-localization. In Proceedings of Surgetica'2014 : Computer-Assisted Medical Interventions: scientific problems, tools and clinical applications, Chambéry, France, December 2014. Jocelyne TROCCAZ. Keyword(s): Inter operative Relocalization, Endoluminal surgery, Endoscopy. [bibtex-entry]



61. Chloé Audigier, Tommaso Mansi, Hervé Delingette, Saikiran Rapaka, Viorel Mihalef, Puneet Sharma, Ali Kamen, Daniel Carnegie, Emad Boctor, Michael Choti, Dorin Comaniciu, and Nicholas Ayache. Lattice Boltzmann Method For Fast Patient-Specific Simulation of Liver Tumor Ablation from CT Images. In Kensaku Mori, Ichiro Sakuma, Yoshinobu Sato, Christian Barillot, and Nassir Navab, editors, MICCAI - Medical Image Computing and Computer Assisted Intervention - 2013, volume 8151 of Lecture Notes in Computer Science - LNCS, Nagoya, Japan, pages 323-330, September 2013. Springer. [bibtex-entry]



62. Marine Breuilly, Grégoire Malandain, Nicholas Ayache, Julien Guglielmi, Thierry Pourcher, Philippe R. Franken, and Jacques Darcourt. Image-based motion detection in 4D images and application to respiratory motion suppression. In ISBI - International Symposium on Biomedical Imaging, Proceedings of the 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, United States, pages 792-795, April 2013. IEEE. [bibtex-entry]



63. Nicolas Cordier, Bjoern Menze, Hervé Delingette, and Nicholas Ayache. Patch-based Segmentation of Brain Tissues. In Bjoern Menze, Mauricio Reyes, Andras Jakab, Elisabeth Gerstner, Justin Kirby, and Keyvan Farahani, editors, MICCAI Challenge on Multimodal Brain Tumor Segmentation, Proceedings of the MICCAI Challenge on Multimodal Brain Tumor Image Segmentation (BRATS) 2013, Nagoya, Japan, pages 6 - 17, September 2013. IEEE. [bibtex-entry]



64. Ezequiel Geremia, Bjoern H. Menze, and Nicholas Ayache. Spatially Adaptive Random Forest. In 2013 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, CA, United States, pages 1332-35, 2013. IEEE. [bibtex-entry]



65. Pietro Gori, Olivier Colliot, Yulia Worbe, Linda Marrakchi-Kacem, Sophie Lecomte, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, and Stanley Durrleman. Bayesian Atlas Estimation for the Variability Analysis of Shape Complexes. In MICCAI 2013 : Medical Image Computing and Computer Assisted Intervention, Nagoya, Japan, pages 267-274, September 2013. [bibtex-entry]



66. Pietro Gori, Olivier Colliot, Yulia Worbe, Linda Marrakchi-Kacem, Sophie Lecomte, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, and Stanley Durrleman. Towards joint morphometry of white matter tracts and gray matter surfaces. In Human Brain Mapping, Seattle, United States, 2013. Note: Organization for Human Brain Mapping 2013. [bibtex-entry]



67. Vikash Gupta, Nicholas Ayache, and Xavier Pennec. Improving DTI Resolution from a Single Clinical Acquisition: A Statistical Approach using Spatial Prior. In Kensaku Mori, Ichiro Sakuma, Yoshinobu Sato, Christian Barillot, and Nassir Navab, editors, Proceedings of Medical Image Computing and Computer Assisted Intervention 2013 (MICCAI), volume 8151 of Lecture Notes in Computer Science - LNCS, Nagoya, Japan, pages 477-484, September 2013. Springer. Keyword(s): DTI, Super-resolution, Partial volume effect, Diffusion Tensor Imaging, Clinical Medical Imaging. [bibtex-entry]



68. Marco Lorenzi, Martina Bochetta, Nicholas Ayache, Xavier Pennec, and Giovanni B. Frisoni. Conversion to MCI in healthy individuals with abnormal CSF Ab42 levels is associated with specific longitudinal morphological changes. In Alzheimer's Association International Conference 2013, volume 9, issue 4 (supplement) of Alzheimer's & Dementia: The Journal of the Alzheimer's Association, Boston, United States, pages P596, July 2013. [bibtex-entry]



69. Marco Lorenzi, Bjoern H. Menze, Marc Niethammer, Nicholas Ayache, and Xavier Pennec. Sparse Scale-Space Decomposition of Volume Changes in Deformations Fields. In Kensaku Mori, Ichiro Sakuma, Yoshinobu Sato, Christian Barillot, and Nassir Navab, editors, Medical Image Computing and Computer Aided Intervention (MICCAI), volume 8150 of Lecture Notes in Computer Science - LNCS, Nagoya, Japan, pages 328-335, September 2013. Springer. Keyword(s): Scale-space decomposition, non-rigid registration, longitudinal analysis, stationary velocity fields. [bibtex-entry]



70. Jan Margeta, Kristin Mcleod, Antonio Criminisi, and Nicholas Ayache. Decision forests for segmentation of left atrium from 3D MRI. In 4th International Workshop on Statistical Atlases and Computational Models of the Heart, Nagoya, Japan, September 2013. [bibtex-entry]



71. Erin Stretton, Ezequiel Geremia, Bjoern H. Menze, Hervé Delingette, and Nicholas Ayache. Importance of patient DTI's to accurately model glioma growth using the reaction diffusion equation. In 2013 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, CA, United States, pages 1130-32, 2013. IEEE. [bibtex-entry]



72. Anant S. Vemuri, Stéphane Nicolau, Nicholas Ayache, Jacques Marescaux, and Luc Soler. Inter-Operative Trajectory Registration for Endoluminal Video Synchronization: Application to Biopsy Site Re-localization. In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 8149 of Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, Nagoya, Japan, pages 372-379, September 2013. Springer. Keyword(s): Computer assisted surgery, Surgical Navigation, Biopsy relocalization. [bibtex-entry]



73. Ezequiel Geremia, Bjoern H. Menze, and Nicholas Ayache. Spatial Decision Forests for Glioma Segmentation in Multi-Channel MR Images. In MICCAI Challenge on Multimodal Brain Tumor Segmentation, LNCS, October 2012. Springer. [bibtex-entry]



74. Ezequiel Geremia, Bjoern H. Menze, Marcel Prastawa, Marc-André Weber, Antonio Criminisi, and Nicholas Ayache. Brain tumor cell density estimation from multi-modal MR images based on a synthetic tumor growth model. In MICCAI Workshop on Medical Computer Vision, LNCS, October 2012. Springer. [bibtex-entry]



75. Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, and Nicholas Ayache. Current-based 4D shape analysis for the mechanical personalization of heart models. In Proceedings of MCV Workshop at MICCAI 2012, LNCS, October 2012. Springer. [bibtex-entry]



76. Hervé Lombaert, Leo Grady, Xavier Pennec, Nicholas Ayache, and Farida Cheriet. Spectral Demons - Image Registration via Global Spectral Correspondence. In Proc. of ECCV (2), number 7573 of LNCS, pages 30-44, 2012. [bibtex-entry]



77. Hervé Lombaert, Leo Grady, Xavier Pennec, Jean-Marc Peyrat, Nicholas Ayache, and Farida Cheriet. Groupwise Spectral Log-Demons Framework for Atlas Construction. In Medical Computer Vision (MCV'12) MICCAI workshop, 2012. Note: Best paper award. [bibtex-entry]



78. Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. Disentangling the normal aging from the pathological Alzheimer's disease progression on cross-sectional structural MR images. In MICCAI workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders (NIBAD'12), pages 145-154, October 2012. ISBN: 9781479261994. [bibtex-entry]



79. Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. Regional flux analysis of longitudinal atrophy in Alzheimer's disease. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), volume 7510 of LNCS, pages 739-746, October 2012. Springer, Heidelberg. ISBN: 978-3-642-33414-6. [bibtex-entry]



80. Marco Lorenzi, Giovanni B. Frisoni, Nicholas Ayache, and Xavier Pennec. Probabilistic Flux Analysis of Cerebral Longitudinal Atrophy. In MICCAI workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders (NIBAD'12), pages 256-265, October 2012. ISBN: 9781479261994. [bibtex-entry]



81. Stéphanie Marchesseau, Hervé Delingette, Maxime Sermesant, Kawal Rhode, S.G. Duckett, C. Aldo Rinaldi, Reza Razavi, and Nicholas Ayache. Cardiac Mechanical Parameter Calibration based on the Unscented Transform. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), volume 7511 of LNCS, October 2012. Springer, Heidelberg. [bibtex-entry]



82. Erin Stretton, Emmanuel Mandonnet, Ezequiel Geremia, Bjoern H. Menze, Hervé Delingette, and Nicholas Ayache. Predicting the Location of Glioma Recurrence After a Resection Surgery. In Proceedings of 2nd International MICCAI Workshop on Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data (STIA'12), LNCS, Nice, October 2012. Springer. [bibtex-entry]



83. J. Unkelbach, Bjoern H. Menze, A. Motamedi, F. Dittmann, Ender Konukoglu, Nicholas Ayache, and H. Shih. Glioblastoma growth modeling for radiotherapy target delineation.. In Proc MICCAI Workshop on Image-Guidance and Multimodal Dose Planning in Radiation Therap., pages 12 pages, 2012. [bibtex-entry]



84. Ken C. L. Wong, Jatin Relan, Linwei Wang, Maxime Sermesant, Hervé Delingette, Nicholas Ayache, and Pengcheng Shi. Strain-Based Regional Nonlinear Cardiac Material Properties Estimation From Medical Images. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), LNCS, October 2012. Springer, Heidelberg. Note: To appear. [bibtex-entry]



85. Barbara André, Tom Vercauteren, and Nicholas Ayache. Content-Based Retrieval in Endomicroscopy: Toward an Efficient Smart Atlas for Clinical Diagnosis. In Proceedings of the MICCAI Workshop - Medical Content-based Retrieval for Clinical Decision (MCBR-CDS'11), LNCS, 2011. Springer. [bibtex-entry]



86. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. Retrieval evaluation and distance learning from perceived similarity between endomicroscopy videos. In Proceedings of Medical Image Computing and Computer Assisted Intervention (MICCAI), LNCS, pages 8p, 2011. Springer, Heidelberg. [bibtex-entry]



87. H. Cochet, A. S. Jadidi, F. Sacher, N. Derval, M. Sermesant, J. Relan, S. J. Kim, P. Bordachar, P. Ritter, M. Hocini, M. Montaudon, F. Laurent, N. Ayache, M. Haïssaguerre, and P. Jais. Ventricular Scar At Cardiac CT Correlates To Critical Isthmuses Of Ventricular Tachycardia Circuits And Sites Of Slow Conduction During Sinus Rhythm - Evidence For Clinical Use Of CT Integration Into 3D Mapping Systems. In Heart Rhythm Society '11, May 2011. [bibtex-entry]



88. A. S. Jadidi, H. Cochet, F. Sacher, S. J. Kim, M. Sermesant, J. Relan, N. Derval, S. Miyazaki, A. Shah, D. Scherr, S. B. Wilton, P. Pascale, L. Roten, M. Pederson, S. Knecht, P. Bordachar, P. Ritter, M. Hocini, M. Montaudon, F. Laurent, N. Ayache, M. Haïssaguerre, and P. Jaïs. Ventricular Scar imaging at MRI Correlates to Critical Isthmuses of Ventricular Tachycardia Circuits and Sites of Slow Conduction during Sinus Rhythm - Utility of integrating MR-data into 3D Mapping Systems. In Heart Rhythm Society '11, May 2011. [bibtex-entry]



89. Herve Lombaert, Jean-Marc Peyrat, Pierre Croisille, Stanislas Rapacchi, Laurent Fanton, Patrick Clarysse, Hervé Delingette, and Nicholas Ayache. Statistical Analysis of the Human Cardiac Fiber Architecture from DT-MRI. In Leon Axel and Dimitris Metaxas, editors, Proceedings of FIMH Conference 2011, volume 6666 of LNCS, pages 171-179, May 2011. Springer. Note: Best Paper Award. [bibtex-entry]



90. Herve Lombaert, Jean-Marc Peyrat, Laurent Fanton, Farida Cheriet, Hervé Delingette, Nicholas Ayache, Patrick Clarysse, Isabelle Magnin, and Pierre Croisille. Statistical Atlas of Human Cardiac Fibers: Comparison with Abnormal Hearts. In Proceedings of STACOM Workshop at MICCAI 2011, September 2011. Springer. [bibtex-entry]



91. Herve Lombaert, Jean-Marc Peyrat, Laurent Fanton, Farida Cheriet, Hervé Delingette, Nicholas Ayache, Patrick Clarysse, Isabelle Magnin, and Pierre Croisille. Variability of the Human Cardiac Laminar Structure. In Proceedings of STACOM Workshop at MICCAI 2011, September 2011. Springer. [bibtex-entry]



92. Herve Lombaert, Jean-Marc Peyrat, Stanislas Rapacchi, Laurent Fanton, Herve Delingette, Nicholas Ayache, and Pierre Croisille. Human Statistical Atlas of Cardiac Fiber Architecture from DT-MRI. In Proceedings of Intl. Soc. Mag. Reson. Med. (ISMRM) 2011, volume 19, pages 280, May 2011. [bibtex-entry]



93. Marco Lorenzi, Nicholas Ayache, Giovanni B. Frisoni, and Xavier Pennec. Mapping the effects of A$\beta_{1-42}$ levels on the longitudinal changes in healthy aging: hierarchical modeling based on stationary velocity fields. In Proceedings of Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 6892 of LNCS, pages 663-670, 2011. Springer. [bibtex-entry]



94. Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. Schilds Ladder for the parallel transport of deformations in time series of images. In G. Szekely and H. Hahn, editors, Proceedings of Information Processing in Medical Imaging (IPMI'11), volume 6801 of LNCS, pages 463-474, 2011. Note: Honorable Mention (runner-up) for the Erbsmann Award. [bibtex-entry]



95. Jan Margeta, Ezequiel Geremia, Antonio Criminisi, and Nicholas Ayache. Layered Spatio-temporal Forests for Left Ventricle Segmentation from 4D Cardiac MRI Data. In Proceedings of STACOM Workshop at MICCAI 2011, September 2011. Springer. [bibtex-entry]



96. Bjoern H. Menze, Koen Van Leemput, Antti Honkela, Ender Konukoglu, Marc-Andre Weber, Nicholas Ayache, and Polina Golland. A Generative Approach for Image-Based Modeling of Tumor Growth. In G. Szekely and H. Hahn, editors, Proceedings of Information Processing in Medical Imaging (IPMI'11), LNCS 6801, pages 13p, 2011. [bibtex-entry]



97. Mihaela Pop, Maxime Sermesant, Jean-Marc Peyrat, Eugene Crystal, Sudip Ghate, Tommaso Mansi, Ilan Lashevsky, Beiping Qiang, Elliot R. McVeigh, Nicholas Ayache, and Graham A. Wright. A 3D MRI-Based Cardiac Computer Model to Study Arrhythmia and Its In-vivo Experimental Validation. In FIMH, pages 195-205, 2011. [bibtex-entry]



98. Adityo Prakosa, Maxime Sermesant, Hervé Delingette, Eric Saloux, Pascal Allain, Pascal Cathier, Patrick Etyngier, Nicolas Villain, and Nicholas Ayache. Synthetic Echocardiographic Image Sequences for Cardiac Inverse Electro-Kinematic Learning. In Proceedings of Medical Image Computing and Computer Assisted Intervention (MICCAI), LNCS, Toronto, Canada, pages 8p, September 2011. Springer, Heidelberg. [bibtex-entry]



99. J. Relan, M. Sermesant, H. Delingette, and N. Ayache. Personalisation of a 3D Ventricular Electrophysiological Model, Using Endocardial and Epicardial Contact Mapping and MRI. In Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges - Second International Workshop, STACOM 2011, Held in Conjunction with MICCAI 2011, pages 14-22, 2011. [bibtex-entry]



100. Barbara André, Tom Vercauteren, Anna M. Buchner, Muhammad Waseem Shahid, Michael B. Wallace, and Nicholas Ayache. An image retrieval approach to setup difficulty levels in training systems for endomicroscopy diagnosis. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), number 6362 of Lecture Notes in Computer Science, Beijing, China, pages 480-487, September 2010. Springer. [bibtex-entry]



101. Barbara André, Tom Vercauteren, Michael B. Wallace, Anna M. Buchner, and Nicholas Ayache. Endomicroscopic video retrieval using mosaicing and visual words. In Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), pages 1419-1422, 2010. IEEE. [bibtex-entry]



102. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, and José Braga. Comparison of the endocast growth of chimpanzees and bonobos via temporal regression and spatiotemporal registration. In Miccai Workshop on Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data, Beijing, China, September 2010. [bibtex-entry]



103. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, and José Braga. Measuring the inter-species variability of endocast growth using shape regression and spatiotemporal registration. In Abstracts of the 79-th annual meeting of the American Assoc. of Physical Anthropologists (AAPA), April 2010, Albuquerque, pages 78-79, 2010. [bibtex-entry]



104. Vincent Garcia, Tom Vercauteren, Grégoire Malandain, and Nicholas Ayache. Diffeomorphic demons and the EMPIRE10 challenge. In Grand Challenges in Medical Image Analysis (MICCAI workshop), Beijing, China, September 2010. [bibtex-entry]



105. Ezequiel Geremia, Bjoern H. Menze, Olivier Clatz, Ender Konukoglu, Antonio Criminisi, and Nicholas Ayache. Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), LNCS, Beijing, China, September 2010. Springer. [bibtex-entry]



106. Marco Lorenzi, Nicholas Ayache, G. Frisoni, and Xavier Pennec. 4D registration of serial brain MR's images: a robust measure of changes applied to Alzheimer's disease. In Miccai Workshop on Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data, Beijing, China, September 2010. Note: Best Oral Presentation award. [bibtex-entry]



107. Tommaso Mansi, Xavier Pennec, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. LogDemons Revisited: Consistent Regularisation and Incompressibility Constraint for Soft Tissue Tracking in Medical Images. In Proc. of Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), part II, volume 6362 of LNCS, Beijing, China, pages 652-659, September 2010. [bibtex-entry]



108. Tommaso Mansi, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Nicholas Ayache, and Younes Boudjemline. Modèles numériques pour la simulation et la prédiction de la fonction cardiaque. In Congrès de la Société Francaise de Pédiatrie et de l'Association des Pédiatres de Langue Française (APLF), 2010. Note: Archives de Pédiatrie 17(6):611-2, PMID: 20654804. [bibtex-entry]



109. Bjoern H. Menze, Koen Van Leemput, Danial Lashkari, Marc-André Weber, Nicholas Ayache, and Polina Golland. A generative model for brain tumor segmentation in multi-modal images. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), LNCS, Beijing, China, September 2010. Springer. [bibtex-entry]



110. Adityo Prakosa, Maxime Sermesant, Hervé Delingette, Eric Saloux, Pascal Allain, Pascal Cathier, Patrick Etyngier, Nicolas Villain, and Nicholas Ayache. Non-Invasive Activation Times Estimation using 3D Echocardiography. In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function + a Cardiac Electrophysiological Simulation Challenge (STACOM+CESC'10), volume 6364 of LNCS, Beijing, September 2010. Springer. [bibtex-entry]



111. Jatin Relan, Phani Chinchapatnam, Maxime Sermesant, Kawal Rhode, Hervé Delingette, Reza Razavi, and Nicholas Ayache. Coupled Personalisation of Electrophysiology Models for Simulation of Induced Ischemic Ventricular Tachycardia. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'10), LNCS, Beijing, China, September 2010. [bibtex-entry]



112. Jatin Relan, M. Pop, Hervé Delingette, G.A. Wright, Nicholas Ayache, and Maxime Sermesant. Personalisation of a 3D Cardiac Electrophysiology Model for Ventricular Myocardium using Optical Mapping and MRI. In MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM) and a Cardiac Electrophysiological Simulation Challenge (CESC'10), volume 6364 of LNCS, 2010. Springer. [bibtex-entry]



113. Aldo C. Rinaldi, P.D. Lambiase, Maxime Sermesant, Phani Chinchapatnam, S. Rhode, Kawal, Simon B. Duckett, Anoop Shetty, Radomir Chabiniok, Tommaso Mansi, Florence Billet, Jean-Marc Peyrat, Hervé Delingette, Philippe Moireau, Michel Sorine, Dominique Chapelle, Nicholas Ayache, Matthew Ginks, and Reza Razavi. Biophysical Modelling To Predict Acute Hemodynamic Response To Cardiac Resynchronization Therapy In Human. In Heart Rhythm 2010 : 31st Annual Scientific Sessions, Denver, États-Unis, 2010. [bibtex-entry]



114. Ken C. L. Wong, Florence Billet, Tommaso Mansi, R. Chabiniok, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. Cardiac motion estimation using a proactive deformable model: evaluation and sensitivity analysis. In MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM) and a Cardiac Electrophysiological Simulation Challenge (CESC'10), volume 6364 of LNCS, pages 154-163, 2010. Springer. [bibtex-entry]



115. Barbara André, Tom Vercauteren, Aymeric Perchant, Michael B. Wallace, Anna M. Buchner, and Nicholas Ayache. Endomicroscopic image retrieval and classification using invariant visual features. In Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2009 (ISBI'09), Boston, MA, pages 346-349, August 2009. IEEE. [bibtex-entry]



116. Barbara André, Tom Vercauteren, Aymeric Perchant, Michael B. Wallace, Anna M. Buchner, and Nicholas Ayache. Introducing space and time in local feature-based endomicroscopic image retrieval. In Proceedings of the MICCAI Workshop - Medical Content-based Retrieval for Clinical Decision (MCBR-CDS'09), volume 5853 of Lecture Notes in Computer Science, pages 18-30, February 2009. Springer. [bibtex-entry]



117. Florence Billet, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. Cardiac Motion Recovery and Boundary Conditions Estimation by Coupling an Electromechanical Model and Cine-MRI Data. In Proceedings of Functional Imaging and Modeling of the Heart 2009 (FIMH'09), volume 5528 of LNCS, pages 376-385, 3-5 June 2009. [bibtex-entry]



118. Stanley Durrleman, Pierre Fillard, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. A Statistical Model of White Matter Fiber Bundles based on Currents. In Jerry L. Prince, Dzung L. Pham, and Kyle J. Myers, editors, Proceedings of Information Processing in Medical Imaging (IPMI'09), volume 5636 of LNCS, pages 114-125, 2009. [bibtex-entry]



119. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Guido Gerig, and Nicholas Ayache. Spatiotemporal Atlas Estimation for Developmental Delay Detection in Longitudinal Datasets. In Guang-Zhong Yang, David Hawkes, Daniel Rueckert, Alison Noble, and Chris Taylor, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'09), Part I, volume 5761 of Lecture Notes in Computer Science, London, UK, pages 297-304, September 2009. Springer. [bibtex-entry]



120. Hans Lamecker, Tommaso Mansi, Jatin Relan, Florence Billet, Maxime Sermesant, Nicholas Ayache, and Hervé Delingette. Adaptive Tetrahedral Meshing for Personalized Cardiac Simulations. In MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling (CI2BM09), London United Kingdom, pages 149-158, 2009. Keyword(s): elements, modeling, mesh quality, mesh size control. [Abstract] [bibtex-entry]



121. Tommaso Mansi, Stanley Durrleman, Boris Bernhardt, Maxime Sermesant, Hervé Delingette, Ingmar Voigt, Philipp Lurz, Andrew M Taylor, Julie Blanc, Younes Boudjemline, Xavier Pennec, and Nicholas Ayache. A Statistical Model of Right Ventricle in Tetralogy of Fallot for Prediction of Remodelling and Therapy Planning. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'09), volume 5761 of Lecture Notes in Computer Science, London, UK, pages 214-221, September 2009. Springer. [bibtex-entry]



122. Tommaso Mansi, Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Julie Blanc, Younes Boudjemline, and Nicholas Ayache. Physically-Constrained Diffeomorphic Demons for the Estimation of 3D Myocardium Strain from Cine-MRI. In Proceedings of Functional Imaging and Modeling of the Heart 2009 (FIMH'09), volume 5528 of LNCS, pages 201-210, 3-5 June 2009. [bibtex-entry]



123. Mihaela Pop, Maxime Sermesant, Tommaso Mansi, Eugene Crystal, Jay Detsky, _Yuesong Yang, Paul Fefer, Elliot McVeigh, Alexander Dick, Nicholas Ayache, and Graham Wright. Characterization of Post-infarct Scars in a Porcine Model - a Combined Experimental and Theoretical Study. In Proceedings of Functional Imaging and Modeling of the Heart 2009 (FIMH'09), volume 5528 of LNCS, pages 1-10, 3-5 June 2009. [bibtex-entry]



124. Jatin Relan, Maxime Sermesant, Hervé Delingette, Mihaela Pop, Graham Wright, and Nicholas Ayache. Quantitative comparison of two cardiac electrophysiology models using personalisation to optical and MR data. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'09), Boston, MA, pages 1027-1030, July 2009. Keyword(s): bioelectric phenomena, biomedical MRI, biomedical optical imaging, cardiology, image resolution, medical image processing, physiological modelsAliev-Panfilov model, MRI, cardiac models, depolarisation, electrophysiology, optical imaging, phenomenological model, porcine healthy heart, repolarisation, spatial resolution, temporal resolution. [bibtex-entry]



125. Jatin Relan, Maxime Sermesant, Mihaela Pop, Hervé Delingette, Michel Sorine, Graham Wright, and Nicholas Ayache. Parameter Estimation of a 3D Cardiac Electrophysiology Model Including the Restitution Curve Using Optical and MR Data. In Olaf Dössel and Wolfgang C. Schlegel, editors, World Congress on Medical Physics and Biomedical Engineering, volume 25/IV of IFMBE Proceedings, Munich, Germany, pages 1716-1719, September 2009. Springer. [bibtex-entry]



126. Jatin Relan, Maxime Sermesant, Mihaela Pop, Hervé Delingette, Michel Sorine, Graham Wright, and Nicholas Ayache. Volumetric Prediction of Cardiac Electrophysiology using a Heart Model Personalised to Surface Data. In MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling - CI2BM09, London, UK, pages 19-27, 2009. [bibtex-entry]



127. Tammy Riklin-Raviv, Bjoern H. Menze, Koen Van Leemput, Bram Stieltjes, Marc-André Weber, Nicholas Ayache, William M. Wells, and Polina Golland. Joint segmentation via patient-specific latent anatomy model. In MICCAI Workshop on Probabilistic Methods in Medical Image Analysis (PMMIA'09)), London, UK, September 2009. [bibtex-entry]



128. Maxime Sermesant, Florence Billet, Radomir Chabiniok, Tommaso Mansi, Phani Chinchapatnam, Philippe Moireau, Jean-Marc Peyrat, Kawal Rhode, Matt Ginks, Pier Lambiase, Simon Arridge, Hervé Delingette, Michel Sorine, Aldo Rinaldi, Dominique Chapelle, Reza Razavi, and Nicholas Ayache. Personalised Electromechanical Model of the Heart for the Prediction of the Acute Effects of Cardiac Resynchronisation Therapy. In Proceedings of Functional Imaging and Modeling of the Heart 2009 (FIMH'09), volume 5528 of LNCS, pages 239-248, 3-5 June 2009. [bibtex-entry]



129. Florence Billet, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. Cardiac Motion Recovery by Coupling an Electromechanical Model and Cine-MRI Data: First Steps. In K. Miller and P.M.F. Nielsen, editors, Proc. of the Workshop on Computational Biomechanics for Medicine III. (Workshop MICCAI-2008), September 2008. [bibtex-entry]



130. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. A Forward Model to Build Unbiased Atlases from Curves and Surfaces. In X. Pennec and S. Joshi, editors, Proc. of the International Workshop on the Mathematical Foundations of Computational Anatomy (MFCA-2008), September 2008. [bibtex-entry]



131. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Sparse Approximation of Currents for Statistics on Curves and Surfaces. In Dimitris Metaxas, Leon Axel, Gábor Székely, and Gabor Fichtinger, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), Part II, volume 5242 of LNCS, New-York, USA, pages 390-398, September 2008. Springer. [bibtex-entry]



132. Heike Hufnagel, Xavier Pennec, Jan Ehrhardt, Nicholas Ayache, and Heinz Handels. A Global Criterion for the Computation of Statistical Shape Model Parameters Based on Correspondence Probabilities. In Springer, editor, Bildverarbeitung für die Medizin 2008, volume 14 of Informatik aktuell, pages 277-282, 2008. [bibtex-entry]



133. H. Hufnagel, X. Pennec, J. Ehrhardt, N. Ayache, and H. Handels. Comparison of Statistical Shape Models Built on Correspondence Probabilities and One-to-One Correspondences. In Proc. SPIE Symposium on Medical Imaging '08, volume 6914 of SPIE Conference Series, San Diego, USA, February 2008. [bibtex-entry]



134. Ender Konukoglu, W.M. Wells, S. Novellas, Nicholas Ayache, R. Kikinis, P.M. Black, and K.M. Pohl. Monitoring Slowly Evolving Tumors. In In Proceedings of the IEEE Internation Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 2008. [bibtex-entry]



135. Damien Lepiller, Maxime Sermesant, Mihaela Pop, Hervé Delingette, Graham A. Wright, and Nicholas Ayache. Cardiac Electrophysiology Model Adjustment Using the Fusion of MR and Optical Imaging. In Dimitris N. Metaxas, Leon Axel, Gabor Fichtinger, and Gábor Székely, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), volume 5241 of Lecture Notes in Computer Science, pages 678-685, 2008. Springer. [bibtex-entry]



136. Jean-Marc Peyrat, Hervé Delingette, Maxime Sermesant, Xavier Pennec, Chenyang Xu, and Nicholas Ayache. Registration of 4D Time-Series of Cardiac Images with Multichannel Diffeomorphic Demons. In Dimitris Metaxas, Leon Axel, Gabor Fichtinger, and Gábor Székely, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), volume 5242 of Lecture Notes in Computer Science, New York, USA, pages 972-979, September 2008. Springer. [bibtex-entry]



137. Jean-Christophe Souplet, Christine Lebrun, Nicholas Ayache, and Grégoire Malandain. A New Evaluation Of The Brain Parenchymal Fraction: Application In Multiple Sclerosis Longitudinal Studies. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, pages 65-68, May 2008. IEEE. [bibtex-entry]



138. Jean-Christophe Souplet, Christine Lebrun, Nicholas Ayache, and Grégoire Malandain. An Automatic Segmentation of T2-FLAIR Multiple Sclerosis Lesions. In MICCAI-Multiple Sclerosis Lesion Segmentation Challenge Workshop, New York, NY, USA, September 2008. [bibtex-entry]



139. N. Toussaint, T. Mansi, H. Delingette, Nicholas Ayache, and M. Sermesant. An Integrated Platform for Dynamic Cardiac Simulation and Image Processing: Application to Personalised Tetralogy of Fallot Simulation. In Proc. Eurographics Workshop on Visual Computing for Biomedicine (VCBM), Delft, The Netherlands, 2008. Keyword(s): Cardiac Simulation, Freeware, Dynamics, Visualization, VTK. [bibtex-entry]



140. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Symmetric Log-Domain Diffeomorphic Registration: A Demons-based Approach. In Dimitris Metaxas, Leon Axel, Gabor Fichtinger, and Gábor Székely, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), Part I, volume 5241 of Lecture Notes in Computer Science, New York, USA, pages 754-761, September 2008. Springer. [bibtex-entry]



141. Boon Thye Thomas Yeo, Mert Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl, and Polina Golland. Spherical Demons: Fast Surface Registration. In Dimitris Metaxas, Leon Axel, Gabor Fichtinger, and Gábor Székely, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), volume 5241 of Lecture Notes in Computer Science, New York, USA, pages 745-753, September 2008. Springer. Note: Source code found here. [bibtex-entry]



142. Boon Thye Thomas Yeo, Tom Vercauteren, Pierre Fillard, Xavier Pennec, Polina Golland, Nicholas Ayache, and Olivier Clatz. DTI Registration with Exact Finite-Strain Differential. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 2008. IEEE. [bibtex-entry]



143. Jimena Costa, Hervé Delingette, and Nicholas Ayache. Automatic Segmentation of the Bladder Using Deformable Models. In Proceedings of IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07), Metro Washington DC, USA, pages 904-907, 2007. [bibtex-entry]



144. Jimena Costa, Hervé Delingette, Sébastien Novellas, and Nicholas Ayache. Automatic Segmentation of Bladder and Prostate Using Coupled 3D Deformable Models. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), volume 4791 of LNCS, Brisbane, Australia, pages 252-260, October 2007. Springer. [bibtex-entry]



145. H. Delingette, M. Sermesant, J.-M. Peyrat, N. Ayache, K. Rhode, R. Razavi, E. McVeigh, D. Chapelle, J. Sainte-Marie, P. Moireau, M. Fernandez, J.-F. Gerbeau, K. Djabella, Q. Zhang, and M. Sorine. CardioSense3D: Patient-Specific Cardiac Simulation. In Proceedings of IEEE International Conference on Biomedical Imaging: From Nano to Macro (ISBI'07), Metro Washington DC, USA, pages 628-631, 12-15 April 2007. [bibtex-entry]



146. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Measuring Brain Variability via Sulcal Lines Registration: a Diffeomorphic Approach. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 4791 of LNCS, Brisbane, Australia, pages 675-682, October 2007. Springer. [bibtex-entry]



147. P. Fillard, X. Pennec, P.M. Thompson, and N. Ayache. Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines. In Proc. of MICCAI'07 Workshop on Statistical Registration: Pair-wise and Group-wise Alignment and Atlas Formation, Brisbane, Australia, 2007. [bibtex-entry]



148. Heike Hufnagel, Xavier Pennec, Jan Ehrhardt, Heinz Handels, and Nicholas Ayache. Point-Based Statistical Shape Models with Probabilistic Correspondences and Affine EM-ICP. In Springer, editor, Bildverarbeitung fuer die Medizin 2007, Informatik aktuell, pages 434-438, March 2007. Springer. Note: Third prize in category best scientific work. Keyword(s): statistical shape models, registration, EM-ICP, probabilistic correspondences. [bibtex-entry]



149. H. Hufnagel, X. Pennec, J. Ehrhardt, H. Handels, and N. Ayache. Shape Analysis Using a Point-Based Statistical Shape Model Built on Correspondence Probabilities. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), volume 4791 of LNCS, Brisbane, Australia, pages 959-967, October 2007. Springer. [bibtex-entry]



150. E. Konukoglu, O. Clatz, Pierre-Yves Bondiau, Maxime Sermesant, H. Delingette, and N. Ayache. Towards an Identification of Tumor Growth Parameters from Time Series of Images. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 4791 of LNCS, Brisbane, Australia, pages 549-556, October 2007. Springer. [bibtex-entry]



151. E. Konukoglu, M. Sermesant, O. Clatz, J.-M. Peyrat, H. Delingette, and N. Ayache. A Recursive Anisotropic Fast Marching Approach to Reaction Diffusion Equation: Application to Tumor Growth Modeling. In Proceedings of the 20th International Conference on Information Processing in Medical Imaging (IPMI'07), volume 4584 of LNCS, pages 686-699, 2-6 July 2007. [bibtex-entry]



152. Stephane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. Clinical Evaluation of a Respiratory Gated Guidance System for Liver Punctures. In Nicholas Ayache, Sébastien Ourselin, and Anthony J. Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), volume 4792 of Lecture Notes in Computer Science, Brisbane, Australia, pages 77-85, October 2007. Springer. [bibtex-entry]



153. Aymeric Perchant, Tom Vercauteren, Fabien Oberrietter, Nicolas Savoire, and Nicholas Ayache. Region Tracking Algorithms on Laser Scanning Devices Applied to Cell Traffic Analysis. In Proceedings IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07), Metro Washington DC, USA, pages 260-263, April 2007. [bibtex-entry]



154. Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, Elliot McVeigh, and Nicholas Ayache. Statistical Comparison of Cardiac Fibre Architectures. In Proceedings of Functional Imaging and Modeling of the Heart 2007 (FIMH'07), volume 4466 of LNCS, pages 413-423, 7-9 June 2007. [bibtex-entry]



155. M. Reyes Aguirre, M.G. Linguraru, K. Marias, N. Ayache, L.-P. Nolte, and M. A. González Ballester. Statistical Shape Analysis via Principal Factor Analysis. In Proceedings of IEEE International Symposium on Biomedical Imaging (ISBI), Metro Washington DC, USA, pages 1216-1219, 2007. [bibtex-entry]



156. M. Sermesant, E. Konukoglu, H. Delingette, Y. Coudiere, P. Chinchaptanam, K.S. Rhode, R. Razavi, and N. Ayache. An anisotropic multi-front fast marching method for real-time simulation of cardiac electrophysiology. In Proceedings of Functional Imaging and Modeling of the Heart 2007 (FIMH'07), volume 4466 of LNCS, pages 160-169, 7-9 June 2007. [bibtex-entry]



157. Tom Vercauteren, Xavier Pennec, Ezio Malis, Aymeric Perchant, and Nicholas Ayache. Insight Into Efficient Image Registration Techniques and the Demons Algorithm. In Proc. Information Processing in Medical Imaging (IPMI'07), volume 4584 of Lecture Notes in Computer Science, Kerkrade, The Netherlands, pages 495-506, July 2007. Springer. [bibtex-entry]



158. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Diffeomorphic Demons Using ITK's Finite Difference Solver Hierarchy. In Insight Journal -- ISC/NA-MIC Workshop on Open Science at MICCAI 2007, October 2007. Note: Source code available at rlhttp://hdl.handle.net/1926/510. [bibtex-entry]



159. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Non-parametric Diffeomorphic Image Registration with the Demons Algorithm. In Nicholas Ayache, Sébastien Ourselin, and Anthony J. Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), volume 4792 of Lecture Notes in Computer Science, Brisbane, Australia, pages 319-326, October 2007. Springer. [bibtex-entry]



160. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. A Log-Euclidean Framework for Statistics on Diffeomorphisms. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, number 4190 of LNCS, pages 924-931, 2-4 October 2006. Keyword(s): Non-rigid registration, Lie groups, Diffeomorphisms, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]



161. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. A Log-Euclidean Polyaffine Framework for Locally Rigid or Affine Registration. In J.P.W. Pluim, B. Likar, and F.A. Gerritsen, editors, Proceedings of the Third International Workshop on Biomedical Image Registration (WBIR'06), volume 4057 of LNCS, Utrecht, The Netherlands, pages 120-127, 9 - 11 July 2006. Springer. Keyword(s): Polyaffine transformations, Diffeomorphisms, Non-rigid registration, Multi-affine registration, Lie groups, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]



162. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. Statistics on Diffeomorphisms in A Log-Euclidean Framework. In X. Pennec and S. Joshi, editors, Proc. of the International Workshop on the Mathematical Foundations of Computational Anatomy (MFCA-2006), pages 16-17, 1st of October 2006. Keyword(s): Non-rigid registration, Lie groups, Diffeomorphisms, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]



163. Nicholas Ayache, Tom Vercauteren, Grégoire Malandain, Fabien Oberrietter, Nicolas Savoire, and Aymeric Perchant. Processing and Mosaicing of Fibered Confocal Images. In MICCAI Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'06), October 2006. Note: Invited. [bibtex-entry]



164. Antoine Azar, Chenyang Xu, Xavier Pennec, and Nicholas Ayache. An interactive Intensity- and Feature-Based Non-Rigid Registration Framework for 3D Medical Images. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 824-827, April 2006. Keyword(s): Spine, variability model, Riemannian geometry. [bibtex-entry]



165. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Nicholas Ayache, and Hubert Labelle. A Novel Framework for the 3D Analysis of Spine Deformation Modes. In Research into Spinal Deformities, volume 123 of Studies in Health Technology and Informatics, pages 176-182, 2006. [bibtex-entry]



166. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Nicholas Ayache, and Hubert Labelle. Assessment of Brace Local Action on Vertebrae Relative Poses. In Research into Spinal Deformities, volume 123 of Studies in Health Technology and Informatics, pages 372-378, 2006. [bibtex-entry]



167. Jonathan Boisvert, Xavier Pennec, Nicholas Ayache, Hubert Labelle, and Farida Cheriet. 3D Anatomic Variability Assesment of the Scoliotic Spine Using Statistics on Lie Groups. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 750-753, April 2006. IEEE. Keyword(s): Spine, variability model, Riemannian geometry. [bibtex-entry]



168. Jonathan Boisvert, Xavier Pennec, Hubert Labelle, Farida Cheriet, and Nicholas Ayache. Principal Spine Shape Deformation Modes Using Riemannian Geometry and Articulated Models. In Proc of the IV Conference on Articulated Motion and Deformable Objects, Andratx, Mallorca, Spain, 11-14 July, volume 4069 of LNCS, pages 346-355, 2006. Springer. Note: AMDO best paper award 2006. [bibtex-entry]



169. Olivier Commowick, Vincent Arsigny, Jimena Costa, Nicholas Ayache, and Grégoire Malandain. An Efficient Locally Affine Framework for the Registration of Anatomical Structures. In Proceedings of the Third IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 478-481, April 2006. Keyword(s): Non-rigid registration, Multi-affine registration, Magnetic Resonance Imaging, Polyaffine transformations, Log-Euclidean metrics, Diffeomorphisms. [bibtex-entry]



170. Pierre Fillard, Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Clinical DT-MRI estimation, smoothing and fiber tracking with log-Euclidean metrics. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 786-789, April 2006. Keyword(s): DT-MRI, tensor estimation, Riemannian geometry, Log-Euclidean metrics. [bibtex-entry]



171. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating Tumor Invasion Margins for Physiologically Determined Radiotherapy Regions. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, number 4190 of LNCS, pages 338-346, 2-4 October 2006. Keyword(s): Tumor growth modeling, Glioma, brain tumors, radiotherapy, hamilton jacobi, DT-MRI, DTI, Diffusion Tensor, fisher kolmogorov, F-KPP. [bibtex-entry]



172. Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, Elliot McVeigh, and Nicholas Ayache. Towards a Statistical Atlas of Cardiac Fiber Structure. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, volume 4190 of LNCS, pages 297-304, 2-4 October 2006. Springer. Keyword(s): DT-MRI, DTI, Diffusion Tensor, Log-Euclidean, Cardiac Fiber, Heart, Myocardium, Atlas. [bibtex-entry]



173. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Fast and Simple Calculus on Tensors in the Log-Euclidean Framework. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part I, volume 3749 of LNCS, Palm Springs, CA, USA, October 26-29, pages 115-122, 2005. Springer. Keyword(s): DT-MRI, Magnetic Resonance Imaging, Tensors, brain, Riemannian geometry, Lie group, regularization, interpolation, Log-Euclidean metrics. [bibtex-entry]



174. Eric Bardinet, Didier Dormont, Grégoire Malandain, Manik Bhattacharjee, Bernard Pidoux, Christian Saleh, Philippe Cornu, Nicholas Ayache, Yves Agid, and Jérôme Yelnik. Retrospective cross-evaluation of an histological and deformable 3D atlas of the basal ganglia on series of Parkinsonian patients treated by deep brain stimulation (DBS). In J. Duncan and G. Gerig, editors, Proceedings of MICCAI'05, volume 3750 of LNCS, Palm Springs, California, pages 385-393, 2005. Springer. [bibtex-entry]



175. Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Modélisation macroscopique de la croissance des tumeurs cérébrales. In Congrès Français de Mécanique (CFM), Troyes, August 2005. [bibtex-entry]



176. Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Nicholas Ayache, Ron Kikinis, Ferenc A. Jolesz, and Simon K. Warfield. Hybrid Formulation of the Model-Based Non-Rigid Registration Problem to Improve Accuracy and Robustness. In J. Duncan and G. Gerig, editors, Proceedings of MICCAI'05, volume 3750 of LNCS, pages 295-302, October 2005. Springer. [bibtex-entry]



177. Olivier Commowick, Radu Stefanescu, Pierre Fillard, Vincent Arsigny, Nicholas Ayache, Xavier Pennec, and Grégoire Malandain. Incorporating Statistical Measures of Anatomical Variability in Atlas-to-Subject Registration for Conformal Brain Radiotherapy. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part II, volume 3750 of LNCS, Palm Springs, CA, USA, October 26-29, pages 927-934, 2005. Springer. Keyword(s): registration, brain, Brain Stem, statistics, validation, Tensors. [Annotation] [bibtex-entry]



178. Pierre Fillard, Vincent Arsigny, Nicholas Ayache, and Xavier Pennec. A Riemannian Framework for the Processing of Tensor-Valued Images. In Ole Fogh Olsen, Luc Florak, and Arjan Kuijper, editors, Deep Structure, Singularities, and Computer Vision (DSSCV), LNCS, pages 112-123, June 2005. Springer. Keyword(s): Tensors, Riemannian geometry, Structure tensors, regularization. [bibtex-entry]



179. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Paul M. Thompson, and Nicholas Ayache. Extrapolation of Sparse Tensor Fields: Application to the Modeling of Brain Variability. In Gary Christensen and Milan Sonka, editors, Proc. of Information Processing in Medical Imaging 2005 (IPMI'05), volume 3565 of LNCS, Glenwood springs, Colorado, USA, pages 27-38, July 2005. Springer. Keyword(s): Sucal lines, Riemannian geometry, brain, Modeling of anatomical variability, Tensors. [bibtex-entry]



180. M. A. González Ballester, M.G. Linguraru, M. Reyes Aguirre, and N. Ayache. On the Adequacy of Principal Factor Analysis for the Study of Shape Variability. In J.M. Fitzpatrick and J.M. Reinhardt, editors, SPIE Medical Imaging '05, volume 5747, pages 1392-1399, 2005. SPIE Publishing. [bibtex-entry]



181. S. Haïk, D. Galanaud, B.A. Faucheux, N. Privat, I. Laffont-Proust, M.G. Linguraru, N. Ayache, J.J. Hauw, D. Dormont, and J.P. Brandel. Early diagnosis of human TSE by multimodality MRI: Spectroscopic detection of thalamic gliosis in a patient with FFI and normal FLAIR and diffusion-weighted imaging. In Proceedings of Prions 2005: Between Fundamentals and Society's Needs, pages 176, 2005. [bibtex-entry]



182. S. Haïk, D. Galanaud, B.A. Faucheux, N. Privat, M.G. Linguraru, N. Ayache, J.J. Hauw, D. Dormont, and J.P. Brandel. Early diagnosis of human TSE by multimodality MRI: Spectroscopic detection of thalamic gliosis in a patient with FFI and normal FLAIR and diffusion-weighted imaging. In II International Symposium on The New Prion Biology: Basic Science, Diagnosis and Therapy, Venice, Italy, April 2005. [bibtex-entry]



183. Heike Hufnagel, Xavier Pennec, Grégoire Malandain, Hans Handels, and Nicholas Ayache. Non-Linear 2D and 3D Registration Using Block-Matching and B-Splines. In Bildverarbeitung fuer die Medizin 2005, Informatik aktuell, Heidelberg, Germany, pages 325-329, March 2005. Deutsches Krebsforschungszentrum, Springer. [bibtex-entry]



184. M.G. Linguraru, N. Ayache, M.A. González Ballester, E. Bardinet, D. Galanaud, S. Haïk, B.A. Faucheux, P. Cozzone, D. Dormont, and J.P. Brandel. New Ratios for the Detection and Classification of CJD in Multisequence MRI of the Brain. In J. Duncan and G. Gerig, editors, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2005, volume 3750 of LNCS, Palm Springs, USA, pages 492-499, 2005. Springer. [bibtex-entry]



185. Valérie Moreau-Villéger, Hervé Delingette, Maxime Sermesant, Hiroshi Ashikaga, Owen Faris, Elliot McVeigh, and Nicholas Ayache. Estimating Local Apparent Conductivity with a 2-D Electrophysiological Model of the Heart. In Proc. of Functional Imaging and Modeling of the Heart 2005 (FIMH'O5), volume 3504 of LNCS, pages 256-266, June 2005. Springer. [bibtex-entry]



186. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. A complete Augmented Reality Guidance System for Liver Punctures: First Clinical Evaluation. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part I, volume 3749 of LNCS, Palm Springs, CA, USA, October 26-29, pages 539-547, 2005. Springer. [bibtex-entry]



187. Xavier Pennec, Radu Stefanescu, Vincent Arsigny, Pierre Fillard, and Nicholas Ayache. Riemannian Elasticity: A statistical regularization framework for non-linear registration. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part II, volume 3750 of LNCS, Palm Springs, CA, USA, October 26-29, pages 943-950, 2005. Springer. Keyword(s): registration, statistics, Tensors, Riemannian geometry, brain. [bibtex-entry]



188. Tom Vercauteren, Aymeric Perchant, Xavier Pennec, and Nicholas Ayache. Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part I, volume 3749 of LNCS, Palm Springs, CA, USA, October 26-29, pages 753-760, October 2005. Springer. [bibtex-entry]



189. Christopher Wagner, Olivier Clatz, Ross Feller, Douglas Perrin, Hervé Delingette, Nicholas Ayache, and Robert Howe. Integrating Tactile and Force Feedback with Finite Element Models. In International Conference on Robotics and Automation (ICRA'05), Barcelona, April 2005. [bibtex-entry]



190. Olivier Clatz, Pierre Yves Bondiau, Hervé Delingette, Grégoire Malandain, Maxime Sermesant, Simon Warfield, and Nicholas Ayache. In Silico Tumor Growth: Application to Glioblastomas. In C. Barillot, D.R. Haynor, and P. Hellier, editors, Proc. of the 7th Int. Conf on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004 (2), volume 3217 of LNCS, Saint-Malo, France, pages 337-345, September 2004. Springer. [bibtex-entry]



191. Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra Golby, Nicholas Ayache, Ron Kikinis, Ferenc Jolesz, and Simon Warfield. Robust Nonrigid Registration to Capture Brain Shift from Intraoperative MRI. In 5th Interventional MRI Symposium, Cambridge, MA. USA, October 2004. [bibtex-entry]



192. Guillaume Dugas-Phocion, Miguel Ángel González Ballester, Christine Lebrun, Stéphane Chanalet, Caroline Bensa, Grégoire Malandain, and Nicholas Ayache. Hierarchical Segmentation of Multiple Sclerosis Lesions in Multi-Sequence MRI. In International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'04), Arlington, VA, USA, April 2004. IEEE. Keyword(s): multiple sclerosis. [bibtex-entry]



193. Guillaume Dugas-Phocion, Miguel Ángel González Ballester, Grégoire Malandain, Christine Lebrun, and Nicholas Ayache. Improved EM-Based Tissue Segmentation and Partial Volume Effect Quantification in Multi-Sequence Brain MRI. In Proc. of MICCAI'04, volume 3216 of Lecture Notes in Computer Science, Saint-Malo, France, pages 26-33, September 2004. Springer. Keyword(s): multiple sclerosis. [bibtex-entry]



194. Guillaume Flandin, Xavier Pennec, Alexis Roche, Will Penny, Nicholas Ayache, and Jean-Baptiste Poline. Multi-subject anatomo-functional classification for activation studies. In NeuroImage (HBM'04), Budapest, Hungary, 2004. [bibtex-entry]



195. Clément Forest, Hervé Delingette, and Nicholas Ayache. Surface Contact and Reaction Force Models for Laparoscopic Simulation. In International Symposium on Medical Simulation, June 2004. [bibtex-entry]



196. D. Galanaud, M.G. Linguraru, S. Haïk, D. Dormont, E. Bardinet, B. Faucheaux, P. Cozzone, N. Ayache, and J.P. Brandel. Intérêt de l'IRM Multimodalitaire dand le Diagnostic des Maladies à Prions. In Congrès du G.I.S. Infections à Prions, pages 26, 2004. [bibtex-entry]



197. Georges Le Goualher, Aymeric Perchant, Magalie Genet, Charlotte Cave, Bertrand Viellerobe, Frederic Berier, Benjamin Abrat, and Nicholas Ayache. Towards Optical Biopsies with an Integrated Fibered Confocal Fluorescence Microscope. In Christian Barillot, David Haynor, and Pierre Hellier, editors, Proc. of MICCAI'04, volume 3217 of LNCS, Saint-Malo, France, pages 761-768, September 2004. Springer. [bibtex-entry]



198. M.G. Linguraru, N. Ayache, E. Bardinet, M.A. González Ballester, D. Galanaud, S. Haïk, B. Faucheaux, J.J. Hauw, J. Chiras, P. Cozzone, D. Dormont, and J.P. Brandel. Détection et Quantification Automatique des Hypersignaux en IRM dans la Maladie de Creutzfeldt-Jakob. In Congrès du G.I.S. Infections à Prions, pages 25, 2004. [bibtex-entry]



199. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. An Accuracy Certified Augmented Reality System for Therapy Guidance. In Proc. of the 8th European Conference on Computer Vision (ECCV 04), Part III, volume 3023 of LNCS, Prague, pages 79-91, May 2004. Springer. Keyword(s): Augmented reality, 3D/2D registration, uncertainty, validation. [bibtex-entry]



200. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. An Augmented Reality System to Guide Liver Punctures. In Workshop AMI-ARCS 2004 held in conjunction with MICCAI'04, pages 77-86, September 2004. IRISA Rennes. [bibtex-entry]



201. Stéphane Nicolau, Jérôme Schmid, Xavier Pennec, Luc Soler, and Nicholas Ayache. An Augmented Reality and Virtuality Interface for a Puncture Guidance System: Design and Validation on an Abdominal Phantom. In Guang-Zhong Yang and Tianzi Jiang, editors, Proc of the Second Int. Workshop on Medical Imaging and Augmented Reality MIAR 2004, volume 3150 of LNCS, Beijing, China, pages 302-310, August 2004. Springer. [bibtex-entry]



202. Nicolas Savoire, Georges Le Goualher, Aymeric Perchant, François Lacombe, Grégoire Malandain, and Nicholas Ayache. Measuring Blood Cells Velocity In Microvessels From a Single Image: Application To In Vivo and In Situ Confocal Microscopy. In Proc. ISBI'04, Arlington (USA), pages 456-459, April 2004. Keyword(s): RBC velocity, confocal microscopy. [bibtex-entry]



203. Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, Hervé Delingette, Didier Mutter, and Jacques Marescaux. Virtual Reality, Augmented Reality and Robotics in surgical procedures of the liver. In Th. M. Buzug and T. C. Lueth, editors, Perspectives in Image-guided Surgery. Proceedings of the Scientific Workshop on Medical Robotics, Navigation and Visualization (MRNV) 2004, RheinAhrCampus Remagen, Germany, pages 476-484, March 11-12 2004. World Scientific. [bibtex-entry]



204. Luc Soler, Stéphane Nicolau, Jérôme Schmid, Christophe Koehl, Jacques Marescaux, Xavier Pennec, and Nicholas Ayache. Virtual Reality and Augmented Reality in Digestive Surgery. In Proc. of IEEE International Symposium on Mixed and Augmented Reality (ISMAR'04), pages 278-279, November 2004. [bibtex-entry]



205. Radu Stefanescu, Olivier Commowick, Grégoire Malandain, Pierre-Yves Bondiau, Nicholas Ayache, and Xavier Pennec. Non-Rigid Atlas to Subject Registration with Pathologies for Conformal Brain Radiotherapy. In C. Barillot, D.R. Haynor, and P. Hellier, editors, Proc. of the 7th Int. Conf on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004, volume 3216 of LNCS, Saint-Malo, France, pages 704-711, September 2004. Springer. Keyword(s): registration, non-rigid, conformal radiotherapy, atlas, pathology. [bibtex-entry]



206. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. A Grid Service for the Interactive Use of a Parallel Non-Rigid Registration Algorithm. In Proc. of HealthGrid 2004, Clermont-Ferrand, January 2004. European Commission, DG Information Society. Keyword(s): registration, matching, real time, parallelism. [bibtex-entry]



207. Jonathan Stoeckel, Nicholas Ayache, Grégoire Malandain, Pierre M. Koulibaly, Klaus P. Ebmeier, and Jacques Darcourt. Automatic Classification of SPECT Images of Alzheimer's Disease Patients and Control Subjects. In Christian Barillot, David Haynor, and Pierre Hellier, editors, Proc. of MICCAI'04, volume 3217 of LNCS, Saint-Malo, France, pages 654-662, September 2004. Springer. [bibtex-entry]



208. Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Polyrigid and Polyaffine Transformations: A New Class of Diffeomorphisms for Locally Rigid or Affine Registration. In Randy E. Ellis and Terry M. Peters, editors, Proc. of MICCAI'03, Part II, volume 2879 of LNCS, Montreal, pages 829-837, November 2003. Springer. Note: MICCAI 2003 Best Student Award in Image Processing and Visualization. PMID: 15948656. [bibtex-entry]



209. C. Blondel, G. Malandain, R. Vaillant, and N. Ayache. 4D deformation field of coronary arteries from monoplane rotational X-ray angiography. In Computer Assisted Radiology and Surgery 2003 Proceedings, volume 1256 of ICS, Londres, United Kingdom, June 2003. Elsevier. [bibtex-entry]



210. C. Blondel, G. Malandain, R. Vaillant, F. Devernay, È. Coste-Manière, and N. Ayache. 4D Tomographic Representation of Coronary Arteries From One Rotational X-ray Sequence. In Randy E. Ellis and Terry M. Peters, editors, Medical image computing and computer-assisted intervention (MICCAI 2003), volume 2878 of LNCS, Montreal, Canada, pages 416-423, November 2003. Springer. [Abstract] [bibtex-entry]



211. C. Blondel, R. Vaillant, G. Malandain, and N. Ayache. 3D tomographic reconstruction of coronary arteries using a precomputed 4D motion field. In Yves Bizais, editor, Proceedings of the VIIth International Conference on Fully 3D Reconstruction In Radiology and Nuclear Medicine, Saint-Malo, France, July 2003. [bibtex-entry]



212. P. Cathier and N. Ayache. New Vector Field Regularization Techniques for Nonrigid Registration. In J.C. Gee, J.B. A. Maintz, and M. W. Vannier, editors, Second International Workshop on Biomedical Image Registration WBIR'03, volume 2717 of Lecture Notes in Computer Science, Philadelphia, PA, USA, pages 1-10, 2003. Springer. Keyword(s): registration, regularization. [bibtex-entry]



213. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Détermination d'un modèle biomécanique du cerveau par l'analyse d'images : application à la maladie de Parkinson. In Congrès Français de Mécanique (CFM), 2003. [bibtex-entry]



214. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Patient Specific Biomechanical Model of the Brain: Application to Parkinson's disease procedure. In N. Ayache and H. Delingette, editors, International Symposium on Surgery Simulation and Soft Tissue Modeling (IS4TM'03), volume 2673 of Lecture Notes in Computer Science, Juan-les-Pins, France, pages 321-331, 2003. INRIA Sophia Antipolis, Springer. [bibtex-entry]



215. J. Dauguet, V. Frouin, Y. Cointepas, D. Hervé, N. Ayache, and P. Hantraye. Robust segmentation of the thalamus using Kohonen algorithm from diffusion tensor image. In Proc of Int. Soc. for Magnetic Resonance in Medicine (ISMRM) 11th Scientific meeting, Toronto, 2003. [bibtex-entry]



216. Guillaume Flandin, Will Penny, Xavier Pennec, Nicholas Ayache, and Jean-Baptiste Poline. A multisubject anatomo-functional parcellation of the brain. In Tomas Paus, Ed Bullmore, and Jonathan D. Cohen, editors, NeuroImage (HBM'03), New York, USA, 2003. Academic Press. Keyword(s): fMRI. [bibtex-entry]



217. Miguel Angel González Ballester, Xavier Pennec, and Nicholas Ayache. Generalized Image Models and Their Application as Statistical Models of Images. In Randy E. Ellis and Terry M. Peters, editors, Proc. of MICCAI'03, volume 2879 of Lecture Notes in Computer Science, Montreal, Canada, pages 150-157, November 2003. Springer. [bibtex-entry]



218. C. Kenwright, E. Bardinet, S.A. Hojjat, G. Malandain, N. Ayache, and A.C.F. Colchester. 2D to 3D Refinement of Post Mortem Optical and MRI Co-Registration. In Randy E. Ellis and Terry M. Peters, editors, Medical image computing and computer-assisted intervention (MICCAI 2003), volume 2879 of LNCS, Montreal, Canada, pages 935-944, November 2003. Springer. [bibtex-entry]



219. M. G. Linguraru, M. A. González Ballester, and N. Ayache. A Multiscale Feature Detector for Morphological Analysis of the Brain. In Randy E. Ellis and Terry M. Peters, editors, Medical Image Computing and Computer-Assisted Intervention'03, volume 2879 of Lecture Notes in Computer Science, Montreal, Canada, pages 738-745, November 2003. Springer. [bibtex-entry]



220. Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, and Nicholas Ayache. Augmented Reality guided radio-frequency tumor ablation. In Proceedings of Augmented and Virtual Reality Workshop (AVIR03), Genève, pages 34-35, 2003. Keyword(s): 3D/2D registration, Augmented reality, validation. [bibtex-entry]



221. Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, and Nicholas Ayache. Guidage de ponctions percutanées à l'aide d'un système de vision basé sur une méthode de recalage 3D/2D. In Actes du colloque Imagerie pour les sciences du vivant et de l'ingénieur (IMVIE03), Strasbourg, 2003. Keyword(s): 3D/2D registration, Augmented reality, validation. [bibtex-entry]



222. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. Evaluation of a New 3D/2D Registration Criterion for Liver Radio-Frequencies Guided by Augmented Reality. In N. Ayache and H. Delingette, editors, International Symposium on Surgery Simulation and Soft Tissue Modeling (IS4TM'03), volume 2673 of Lecture Notes in Computer Science, Juan-les-Pins, France, pages 270-283, 2003. INRIA Sophia Antipolis, Springer. Keyword(s): 3D/2D registration, Augmented reality, validation. [bibtex-entry]



223. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. Vision augmentée de structures anatomiques abdominales recalées par stéréoscopie. In Actes du quatrième colloque francophone. Méthodes et Techniques Optiques pour l'Industrie, volume 1, Belfort, pages 413-418, 2003. [bibtex-entry]



224. A. Pitiot, H. Delingette, N. Ayache, and P. M. Thompson. Expert-Knowledge-Guided Segmentation System for Brain MRI. In Randy E. Ellis and Terry M. Peters, editors, Medical Image Computing and Computer-Assisted Intervention MICCAI'03, volume 2879 of LNCS, Montreal, pages 644-652, November 2003. Springer. [bibtex-entry]



225. Maxime Sermesant, Olivier Clatz, Zhongze Li, Stéphane Lanteri, Hervé Delingette, and Nicholas Ayache. A Parallel Implementation of Non-Rigid Registration Using a Volumetric Biomechanical Model. In J.C. Gee, J.B. A. Maintz, and M. W. Vannier, editors, Second International Workshop on Biomedical Image Registration WBIR'03, volume 2717 of Lecture Notes in Computer Science, Philadelphia, PA, USA, pages 398-407, 2003. Springer. [bibtex-entry]



226. M. Sermesant, O. Faris, F. Evans, E. McVeigh, Yves Coudière, H. Delingette, and N. Ayache. Preliminary validation using in vivo measures of a macroscopic electrical model of the heart. In N. Ayache and H. Delingette, editors, International Symposium on Surgery Simulation and Soft Tissue Modeling (IS4TM'03), volume 2673 of Lecture Notes in Computer Science, Juan-les-Pins, France, pages 230-243, 2003. INRIA Sophia Antipolis, Springer. [bibtex-entry]



227. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Grid Enabled Non-Rigid Registration with a Dense Transformation and A Priori Information. In Randy E. Ellis and Terry M. Peters, editors, Proc. of MICCAI'03, Part II, volume 2879 of LNCS, Montreal, pages 804-811, November 2003. Springer. [bibtex-entry]



228. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Parallel non-rigid registration on a cluster of workstations. In Sofie Norager, editor, Proc. of HealthGrid'03, Lyon, January 2003. European Commission, DG Information Society. Keyword(s): registration, matching, real time, parallelism. [bibtex-entry]



229. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Chantal François, Dominique Tandé, Karine Parain, Grégoire Malandain, Nicholas Ayache, Etienne Hirsch, and Yves Agid. Delineation of the basal ganglia in MR images of patients by automatic registration of a multimodal atlas based on histological and MR data. In NeuroImage (HBM'03), New York, USA, 2003. Keyword(s): fMRI. [bibtex-entry]



230. Eric Bardinet, Pascal Cathier, Alexis Roche, Nicholas Ayache, and Didier Dormont. A posteriori validation of pre-operative planning in functional neurosurgery by quantification of brain pneumocephalus. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 323-330, September 2002. Springer. Keyword(s): functional neurosurgery. [bibtex-entry]



231. Eric Bardinet, Sébastien Ourselin, Didier Dormont, Grégoire Malandain, Dominique Tandé, Karine Parain, Nicholas Ayache, and Jérôme Yelnik. Co-registration of histological, optical and MR data of the human brain. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 548-555, September 2002. Springer. Keyword(s): registration, human brain atlas, histology, MRI. [bibtex-entry]



232. Eric Bardinet, Sébastien Ourselin, Grégoire Malandain, Dominique Tandé, Karine Parain, Nicholas Ayache, and Jérôme Yelnik. Three dimensional functional cartography of the human basal ganglia by registration of optical and histological serial sections. In IEEE International Symposium on Biomedical Imaging, Washington, USA, pages 329-332, 2002. Keyword(s): registration, human brain atlas, histology, MRI. [bibtex-entry]



233. Christophe Blondel, Régis Vaillant, Frédéric Devernay, Grégoire Malandain, and Nicholas Ayache. Automatic trinocular 3D reconstruction of coronary artery centerlines from rotational X-ray angiography. In Computer Assisted Radiology and Surgery 2002 Proceedings, Paris, pages 1073-1078, June 2002. Springer. Note: International Symposium on Cardiovascular Imaging - Invasive Coronary and Vascular Imaging. [bibtex-entry]



234. Didier Dormont, Eric Bardinet, Alexis Roche, Pascal Cachier, François Bonneville, Nicholas Ayache, Philippe Cornu, and Claude Marsault. Study of per-operative pneumocephalus during functional stereotactic procedures using automated registration algorithms of pre and immediate post operative 3D MR acquisitions. In XVIIth Symposium Neuroradiologicum, Paris, August 2002. [bibtex-entry]



235. Guillaume Flandin, Ferath Kherif, Xavier Pennec, Grégoire Malandain, Nicholas Ayache, and Jean-Baptiste Poline. Improved Detection Sensitivity in Functional MRI Data using a Brain Parcelling Technique. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 467-474, September 2002. Springer. Keyword(s): fMRI. [bibtex-entry]



236. Guillaume Flandin, Ferath Kherif, Xavier Pennec, Denis Rivière, Nicholas Ayache, and Jean-Baptiste Poline. A new representation of fMRI data using anatomo-functional constraints. In NeuroImage (HBM'02), Sendai, Japan, 2002. Keyword(s): fMRI. [bibtex-entry]



237. Guillaume Flandin, Ferath Kherif, Xavier Pennec, Denis Rivière, Nicholas Ayache, and Jean-Baptiste Poline. Parcellation of brain images with anatomical and functional constraints for fMRI data analysis. In IEEE International Symposium on Biomedical Imaging, Washington, USA, pages 907-910, 2002. Keyword(s): fMRI. [bibtex-entry]



238. Clément Forest, Hervé Delingette, and Nicholas Ayache. Cutting Simulation of Manifold Volumetric Meshes. In Modelling & Simulation for Computer-aided Medicine and Surgery (MS4CMS'02), 2002. [bibtex-entry]



239. Clément Forest, Hervé Delingette, and Nicholas Ayache. Cutting Simulation of Manifold Volumetric Meshes. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 235-244, September 2002. Springer. [bibtex-entry]



240. Clément Forest, Hervé Delingette, and Nicholas Ayache. Removing Tetrahedra from a Manifold Mesh. In Computer Animation (CA'02), Geneva, Switzerland, pages 225-229, June 2002. IEEE Computer Society. [bibtex-entry]



241. A. Pitiot, A. Toga, N. Ayache, and P. M. Thompson. Texture based MRI segmentation with a two-stage hybrid neural classifier. In World Congress on Computational Intelligence / INNS-IEEE International Joint Conference on Neural Networks WCCI-IJCNN'02, 2002. [bibtex-entry]



242. S. Prima, N. Ayache, A. Janke, S. Francis, D. Arnold, and L. Collins. Statistical Analysis of Longitudinal MRI Data: Application for detection of Disease Activity in MS. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 363-371, September 2002. Springer. [bibtex-entry]



243. M. Sermesant, Y. Coudière, H. Delingette, and N. Ayache. Progress towards an Electro-Mechanical Model of the Heart for Cardiac Image Analysis. In IEEE International Symposium on Biomedical Imaging (ISBI'02), pages 10-14, 2002. Keyword(s): 4D, Heart, segmentation, medical images, motion tracking, electromechanical model. [bibtex-entry]



244. M. Sermesant, Y. Coudière, H. Delingette, N. Ayache, J. Sainte-Marie, D. Chapelle, F. Clément, and M. Sorine. Progress Towards Model-Based Estimation of the Cardiac Electromechanical Activity from ECG Signals and 4D Images. In Marc Thiriet, editor, Modelling and Simulation for Computer-aided Medicine and Surgery (MS4CMS'02), volume 12 of ESAIM: PROC, pages 153-162, 2002. European Series in Applied and Industrial Mathematics. Keyword(s): 4D, Heart, segmentation, medical images, motion tracking, electromechanical model. [bibtex-entry]



245. Maxime Sermesant, Clément Forest, Xavier Pennec, Hervé Delingette, and Nicholas Ayache. Biomechanical Model Construction from Different Modalities: Application to Cardiac Images. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 714-721, September 2002. Springer. Keyword(s): 4D, Heart, segmentation, medical images, motion tracking. [bibtex-entry]



246. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Chantal François, Dominique Tandé, Karine Parain, Sébastien Ourselin, Grégoire Malandain, Nicholas Ayache, and Etienne Hirsch. Elaboration of a three-dimensional, functional and registrable atlas of the human basal ganglia. In 3rd Forum of European Neuroscience, Paris, July 2002. The Federation of European Neuroscience Societies (FENS). Keyword(s): registration, human brain atlas, histology, MRI. [bibtex-entry]



247. C. Allouche, S. Makram, N. Ayache, and H. Delingette. A new kinetic modeling scheme for the human left ventricle wall motion with MR-tagging imaging. In T. Katila, I.E. Magnin, P. Clarysse, J. Montagnat, and J. Nenonen, editors, Functional Imaging and Modeling of the Heart (FIMH'01), Helsinki, Finland, volume 2230 of LNCS, pages 61-68, 2001. Springer. [bibtex-entry]



248. C. Allouche, S. Makram, N. Ayache, and H. Delingette. New methods and algorithms for the accurate real-time motion analysis of the left ventricle with MRI-Tagging imaging. In Computer Assisted Radiology and Surgery (CARS), volume 1230, pages 911-916, June 2001. Elsevier. [bibtex-entry]



249. N. Ayache, D. Chapelle, F. Clément, Y. Coudière, H. Delingette, J.A. Désidéri, M. Sermesant, M. Sorine, and J. Urquiza. Towards Model-Based Estimation of the Cardiac Electro-Mechanical Activity from ECG Signals and Ultrasound Images. In T. Katila, I.E. Magnin, P. Clarysse, J. Montagnat, and Nenonen J., editors, Functional Imaging and Modeling of the Heart (FIMH'01), Helsinki, Finland, volume 2230 of LNCS, pages 120-127, 2001. Springer. Keyword(s): 4D, Heart, segmentation, medical images, motion tracking, electromechanical model. [bibtex-entry]



250. Nicholas Ayache, Xavier Pennec, and Pascal Cachier. Fusing 3-D ultrasound and MRI for real-time image-guided neurosurgery. In Medical Physics and Clinical Engineering Conference, 2001. Note: Invited talk, Physica Medica (European journal of Medical Physics) 17(3). Keyword(s): registration, matching, ultrasound, magnetic resonance, multimodal, deformations. [bibtex-entry]



251. E. Bardinet, A.C.F Colchester, A. Roche, Y. Zhu, Y. He, S. Ourselin, B. Nailon, S.A. Hojjat, J. Ironside, S. Al-Sarraj, N. Ayache, and J. Wardlaw. Registration of Reconstructed Post Mortem Optical Data with MR Scans of the Same Patient. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 957-965, October 2001. Keyword(s): registration, matching, histology. [bibtex-entry]



252. Pascal Cachier, Jean-François Mangin, Xavier Pennec, Denis Rivière, Dimitri Papadopoulos-Orfanos, Jean Régis, and Nicholas Ayache. Multisubject Non-Rigid Registration of Brain MRI using Intensity and Geometric Features. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 734-742, October 2001. Keyword(s): registration, matching, multisubject, magnetic resonance, Deformations. [bibtex-entry]



253. H. Delingette, E. Bardinet, D. Rey, J-D. Lemarechal, J. Montagnat, S. Ourselin, A. Roche, D. Dormont, J. Yelnik, and N. Ayache. YAV++: a Software Platform for Medical Image Processing and Visualization. In Workshop on Interactive Medical Image Visualization and Analysis satellite symposia of MICCAI, IMIVA'01, Utrecht, The Netherlands, October 2001. [bibtex-entry]



254. P. Hellier, C. Barillot, I. Corouge, B. Giraud, G. Le Goualher, L. Collins, A. Evans, G. Malandain, and N. Ayache. Retrospective Evaluation of Inter-subject Brain registration. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 258-265, October 2001. Keyword(s): registration, matching. [bibtex-entry]



255. O. Migneco, G. Malandain, P.M. Koulibaly, Ph. Robert, N. Ayache, and J. Darcourt. Evaluation of an automatic classifier for SPECT Alzheimer's disease diagnosis. In European Association of Nuclear Medicine Meeting, Napoli, Italy, 2001. Note: European Journal of Nuclear Medecine 28(8):1056. [bibtex-entry]



256. S. Ourselin, E. Bardinet, D. Dormont, G. Malandain, A. Roche, N. Ayache, D. Tandé, K. Parain, and J. Yelnik. Fusion of histological sections and MR images: towards the construction of an atlas of the human basal ganglia. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 743-751, October 2001. Keyword(s): registration, matching, human brain atlas, histology, MRI. [bibtex-entry]



257. Xavier Pennec, Nicholas Ayache, Alexis Roche, and Pascal Cachier. Non-rigid MR/US registration for tracking brain deformations. In IEEE Computer Society Press, editor, Proc of Int. Workshop on Medical Imaging and Augmented Reality (MIAR 2001), 10-12 June 2001, Shatin, Hong Kong, pages 79-86, June 2001. Keyword(s): registration, matching, motion tracking, multimodal, ultrasound, magnetic resonance, deformations. [bibtex-entry]



258. Xavier Pennec, Pascal Cachier, and Nicholas Ayache. Tracking brain deformations in time sequences of 3D US images. In M.I. Insana and R.M. Leahy, editors, Proc. of IPMI'01, volume 2082 of LNCS, Davis, CA, USA, pages 169-175, June 2001. Springer. Keyword(s): registration, matching, motion tracking, ultrasound, deformations. [bibtex-entry]



259. G. Picinbono, H. Delingette, and N. Ayache. Non-linear and anisotropic elastic soft tissue models for medical simulation. In ICRA2001: IEEE International Conference Robotics and Automation, Seoul Korea, May 2001. Note: Best conference paper award. Keyword(s): simulation, Deformations. [bibtex-entry]



260. S. Prima, N. Ayache, Tom Barrick, and Neil Roberts. Maximum Likelihood Estimation of the Bias Field in MR Brain Images: Investigating Different Modelings of the Imaging Process. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 811-819, October 2001. [bibtex-entry]



261. David Rey, Jonathan Stoeckel, Grégoire Malandain, and Nicholas Ayache. A Spatio-temporal Model-based Statistical Approach to Detect Evolving Multiple Sclerosis Lesions. In IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, MMBIA'01, Kauia, Hawai, USA, December 2001. Keyword(s): multiple sclerosis. [bibtex-entry]



262. D. Rey, J. Stoeckel, G. Malandain, and N. Ayache. Using SPM to Detect Evolving MS Lesions. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 1232-1234, October 2001. Springer. Keyword(s): multiple sclerosis. [bibtex-entry]



263. M. Sermesant, Y. Coudière, H. Delingette, N. Ayache, and J.A. Désidéri. An Electro-Mechanical Model of the Heart for Cardiac Image Analysis. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 224-231, October 2001. Keyword(s): 4D, Heart, segmentation, medical images, motion tracking, electromechanical model. [bibtex-entry]



264. J. Stoeckel, G. Malandain, O. Migneco, P.M. Koulibaly, P. Robert, N. Ayache, and J. Darcourt. Classification of SPECT Images of Normal Subjects versus Images of Alzheimer's Disease Patients. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 666-674, October 2001. [bibtex-entry]



265. J. Stoeckel, J.-B. Poline, G. Malandain, N. Ayache, and J. Darcourt. Smoothness and degrees of freedom restrictions when using SPM 99. In Human Brain Mapping HBM'01, Brighton, UK, June 2001. Note: In NeuroImage 13(6 supplement 1):259. [bibtex-entry]



266. A. C. F. Colchester, S. Ourselin, Y. Zhu, E. Bardinet, Y. He, A. Roche, S. Al-Sarraj, B. Nailon, J. Ironside, and N. Ayache. 3-D Reconstruction of Macroscopic Optical Brain Slice Images. In A.M. DiGioia and S. Delp, editors, Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery (MICCAI 2000), volume 1935 of Lectures Notes in Computer Science, Pittsburgh, Pennsylvanie USA, octobre 11-14 2000. Springer. Keyword(s): registration, matching, histology, MRI. [bibtex-entry]



267. I. Dygai, J. Stoeckel, O. Migneco, Ph. Desvignes, G. Malandain, N. Ayache, M. Chatel, F. Fauchon, M. Frenay, J. Darcourt, and F. Bussière. SPM Analysis Applied to MIBI-SPECT for the Diagnosis of Recurrent Oligodendrogliomas. In European Association of Nuclear Medicine Meeting, Paris, France, August 2000. Note: European Journal of Nuclear Medecine 27(8):1144. [bibtex-entry]



268. O. Migneco, G. Malandain, A. Roche, I. Dygai, F. Bussière, N. Ayache, and J. Darcourt. Absolute calibration of HMPAO SPECT using Xenon-133. In European Association of Nuclear Medicine Meeting, Paris, France, August 2000. Note: European Journal of Nuclear Medecine 27(8):967. [bibtex-entry]



269. S. Ourselin, A. Roche, S. Prima, and N. Ayache. Block Matching: A General Framework to Improve Robustness of Rigid Registration of Medical Images. In A.M. DiGioia and S. Delp, editors, Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery (MICCAI 2000), volume 1935 of Lectures Notes in Computer Science, Pittsburgh, Penn, USA, pages 557-566, octobre 11-14 2000. Springer. Keyword(s): registration, matching, histology, MRI. [bibtex-entry]



270. G. Picinbono, H. Delingette, and N. Ayache. Real-Time Large Displacement Elasticity for Surgery Simulation: Non-Linear Tensor-Mass Model. In Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery: MICCAI 2000, pages 643-652, October 2000. Keyword(s): conference, simulation. [bibtex-entry]



271. G. Picinbono, J.-C. Lombardo, H. Delingette, and N. Ayache. Anisotropic Elasticity and Forces Extrapolation to Improve Realism of Surgery Simulation. In ICRA2000: IEEE International Conference Robotics and Automation, San Francisco USA, pages 596-602, April 2000. Keyword(s): conference, simulation. [bibtex-entry]



272. S. Prima, S. Ourselin, and N. Ayache. Computation of the Mid-Sagittal Plane in 3D Images of the Brain. In D. Vernon, editor, Sixth European Conference on Computer Vision, ECCV'2000, volume 1842-3 of Lecture Notes in Computer Science, Dublin, Irlande, pages 685-701, June/July 2000. Springer. Note: Http://www.inria.fr/rrrt/RR-3841.html. [bibtex-entry]



273. A. Roche, A. Guimond, N. Ayache, and J. Meunier. Multimodal Elastic Matching of Brain Images. In Computer Vision - ECCV 2000, volume 1843 of LNCS, Dublin, Irlande, pages 511-527, June 2000. Springer. [bibtex-entry]



274. A. Roche, X. Pennec, M. Rudolph, D. P. Auer, G. Malandain, S. Ourselin, L. M. Auer, and N. Ayache. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. In A.M. DiGioia and S. Delp, editors, Proc. of the 3rd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'00), volume 1935 of LNCS, Pittsburgh, Pennsylvanie, USA, pages 567-577, October 11-14 2000. Note: Published in IEEE TMI 20(10), oct. 2001, p. 25-31. Keyword(s): registration, matching, multimodal, magnetic resonance, ultrasound, correlation ratio. [bibtex-entry]



275. L. Soler, J.-M. Clément, C. Koehl, H. Delingette, G. Malandain, N. Ayache, O. Dourthe, and J. Marescaux. An Automatic Virtual Patient Reconstruction from CT-Scans for Hepatic Surgical Planning. In Medicine Meets Virtual Reality (MMVR'2000), Studies in Health Technology and Informatic, Los Angeles, January 2000. IOS press. Keyword(s): conference, reconstruction. [bibtex-entry]



276. L. Soler, H. Delingette, G. Malandain, J. Montagnat, N. Ayache, J.-M. Clément, C. Koehl, O. Dourthe, D. Mutter, and J. Marescaux. A Fully Automatic Anatomical, Pathological and Fonctionnal Segmentation from CT-scans for Hepatic Surgery. In Medical Imaging 2000, SPIE proceedings, San Diego, pages 246-255, February 2000. SPIE. Keyword(s): conference, reconstruction. [bibtex-entry]



277. L. Soler, O. Dourthe, G. Malandain, J. Montagnat, H. Delingette, and N. Ayache. A new 3D segmentation of liver neoplasm, portal venous system and parenchymal contours. In European Congress of Radiology, Vienne (Autriche), mars 2000. [bibtex-entry]



278. L. Soler, C. Koehl, H. Delingette, G. Malandain, N. Ayache, D. Mutter, J. Leroy, B. Malassagne, and J. Marescaux. Planification Chirurgicale Hépatique Assistée par Ordinateur. In 11ème Journées de printemps de l'ACHBT, Paris (France), Juin 2000. [bibtex-entry]



279. J. Declerck, N. Ayache, and E.R. McVeigh. Use of a 4D planispheric transformation for the tracking and the analysis of LV motion with tagged MR images. In SPIE Medical Imaging, vol. 3660, San Diego, CA, USA, February 1999. Note: Also research report INRIA RR 3535, Oct. 1998, http://www.inria.fr/rapports/sophia/RR-3535.html. Keyword(s): Tagged MRI, Heart, 4D, Deformations, Splines. [bibtex-entry]



280. H. Delingette, S. Cotin, and N. Ayache. A Hybrid Elastic Model Allowing Real-Time Cutting Deformations and Force Feedback for Surgery Training and Simulation. In N. Thalmann and D. Thalmann, editors, Computer Animation (Computer Animation'99), pages 70-81, May 1999. IEEE Computer Society. Keyword(s): conference, simulation. [bibtex-entry]



281. H. Delingette, S. Cotin, and N. Ayache. Efficient Linear Elastic Models of Soft Tissues for real time surgery simulation. In Medecine Meets Virtual Reality VII, Interactive Technology and the New Paradigm for He althcare, pages 139-151, January 1999. IOS Press. Keyword(s): conference, simulation, Virtual Reality, Simulation, Surgery. [bibtex-entry]



282. Xavier Pennec, Pascal Cachier, and Nicholas Ayache. Understanding the ``Demon's Algorithm'': 3D Non-Rigid registration by Gradient Descent. In C. Taylor and A. Colchester, editors, Proc. of 2nd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'99), volume 1679 of LNCS, Cambridge, UK, pages 597-605, September 1999. Springer. Keyword(s): registration, matching, ultrasound, deformations. [bibtex-entry]



283. D. Rey, G. Subsol, H. Delingette, and N. Ayache. Automatic Detection and Segmentation of Evolving Processes in 3D Medical Images: Application to Multiple Sclerosis. In A. Kuba, M. SM-amal, and A. Todd-Pokropek, editors, Information Processing in Medical Imaging, IPMI'99, LNCS, Visegrád, Hungary, pages 154-167, June 1999. Springer. Keyword(s): conference, reconstruction, multiple sclerosis. [bibtex-entry]



284. D. Rey, G. Subsol, H. Delingette, and N. Ayache. Using Continuum Mechanics Operators for detection and Quantification of Evolving Processes in 3D Medical Images. In EUROMECH'99, Warsaw, Poland, pages 185-188, May 1999. IPPT PAN. Keyword(s): conference, reconstruction, multiple sclerosis. [bibtex-entry]



285. A. Roche, G. Malandain, N. Ayache, and S. Prima. Towards a Better Comprehension of Similarity Measures used in Medical Image Registration. In C. Taylor and A. Colchester, editors, Proc. of 2nd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'99), volume 1679 of LNCS, Cambridge, UK, pages 555-566, September 1999. Springer. [bibtex-entry]



286. L. Soler, J.-M. Clément, C. Koehl, H. Delingette, G. Malandain, N. Ayache, O. Dourthe, D. Mutter, and J. Marescaux. Planification Chirurgicale Hépatique Assistée par Ordinateur. In Journées de la société française de Chirurgie Digestive, Paris, December 1999. [bibtex-entry]



287. Nicholas Ayache. Medical Image Analysis: a challenge for computer vision research. In Int. Conf. on Pattern Recognition, ICPR'98, Brisbane, Australie, pages 1255-1256, August 1998. IEEE. [bibtex-entry]



288. K. Krissian, G. Malandain, N. Ayache, R. Vaillant, and Y. Trousset. Model-Based Multiscale Detection of 3D Vessels. In Proc. of the IEEE Conf. on Computer Vision and Pattern Recognition, CVPR'98, Santa Barbara, pages 722-727, 1998. [bibtex-entry]



289. K. Krissian, G. Malandain, N. Ayache, R. Vaillant, and Y. Trousset. Model-Based Multiscale Detection of 3D Vessels. In B. Vemuri, editor, Proc. of Worshop on Biomedical Image Analysis WBIA'98, Santa Barbara, pages 202-208, 1998. [bibtex-entry]



290. Alexis Roche, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. The Correlation Ratio as a New Similarity Measure for Multimodal Image Registration. In Proc. of First Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'98), volume 1496 of LNCS, Cambridge, USA, pages 1115-1124, October 1998. Springer. Keyword(s): registration, matching, multimodal, correlation ratio. [bibtex-entry]



291. N. Ayache. Analysis of 3D Brain Images. In International Workshop on Neuro-informatics, Karolinska institute, Suede, September 1997. [bibtex-entry]



292. N. Ayache. Medical Image Analysis and Simulation. In Proceedings of ASIAN'97, Lecture Notes in Computer Science, Katmandou, Népal, December 1997. Springer. [bibtex-entry]



293. N. Ayache, S. Cotin, and H. Delingette. Surgery simulation with visual and haptic feedback. In Proceedings of the Eighth International Symposium of Robotics Research, Hayama, Japan, October 1997. Keyword(s): workshop, simulation. [bibtex-entry]



294. P.-Y. Bondiau, G. Malandain, N. Ayache, C. Zur, P. Chauvel, and P. Gastaud. L'oeil virtuel. In 103ème Congrès de la société française d'ophtalmologie, Paris, France, May 1997. [bibtex-entry]



295. J. Declerck, J. Feldmar, and N. Ayache. Definition of a 4D continuous polar transformation for the tracking and the analysis of LV motion. In Computer Vision, Virtual Reality and Robotics in Medicine II - Medical Robotics and Computer Assisted Surgery III, volume 1205 of Lecture Notes in Computer Science, pages 33-42, March 1997. Keyword(s): Matching, Heart, SPECT, Splines, Atlas. [bibtex-entry]



296. J. Declerck, J. Feldmar, and N. Ayache. Tracking and analysis of left ventricular motion with 4D planispheric transformations. In Medical and Biological Engineering and Computing, volume 35, pages 685, September 1997. Keyword(s): Motion tracking, Heart, 4D. [bibtex-entry]



297. J. Feldmar, G. Malandain, N. Ayache, S. Fernández-Vidal, E. Maurincomme, and Y. Trousset. Matching 3D MR Angiography Data and 2D X-ray Angiograms. In CVRMed-MRCAS'97, volume 1205 of LNCS, Grenoble, France, pages 129-138, March 1997. Springer. [bibtex-entry]



298. K. Krissian, G. Malandain, and N. Ayache. Directional Anisotropic Diffusion Applied to Segmentation of Vessels in 3D Images. In Scale-Space Theory in Computer Vision (Scale-Space'97), volume 1252 of LNCS, Utrecht, The Netherlands, pages 345-348, July 1997. Springer. [bibtex-entry]



299. O. Migneco, M. Benoit, G. Malandain, J.-P. Thirion, Ph. Robert, N. Ayache, F. Bussière, and J. Darcourt. SPECT memory activation thanks to non-rigid coregistration. In European Association of Nuclear Medecine Meeting, Glasgow, Scotland, August 1997. [bibtex-entry]



300. O. Migneco, J. Darcourt, M. Benoit, G. Malandain, J.-P. Thirion, Ph. Robert, R. Vidal, Ph. Desvignes, J. Benoliel, N. Ayache, and F. Bussière. Activation mnésique en TEMP. In 36eme Colloque de médecine nucléaire 1997, Rennes, France, October 1997. [bibtex-entry]



301. O. Migneco, J.-P. Thirion, M. Benoit, G. Malandain, P. Robert, N. Ayache, and J. Darcourt. SPECT memory activation studies thanks to non-rigid automated 3D image registration. In CVRMed-MRCAS'97, volume 1205 of LNCS, Grenoble, France, pages 487-490, March 1997. Springer. [bibtex-entry]



302. J. Montagnat, H. Delingette, N. Ayache, J.M. Clément, C. Roy, Y. Russier, V. Tassetti, and J. Marescaux. Liver Segmentation in Contrast Enhanced Helical CT-Scans. In Proceedings of World Congress on Medical Physics and Biomedical Engineering, Nice, France, 1997. Keyword(s): workshop, reconstruction. [bibtex-entry]



303. L. Soler, G. Malandain, J. Montagnat, H. Delingette, N. Ayache, J.M. Clément, C. Roy, Y. Russier, V. Tassetti, and J. Marescaux. Automatic Segmentation of Portal Vein in CT-Scans of the Liver. In Proceedings of World Congress on Medical Physics and Biomedical Engineering, number 2, Nice, France, pages 788, 1997. Keyword(s): workshop, reconstruction. [bibtex-entry]



304. E. Bardinet, L.D. Cohen, and N. Ayache. Tracking medical 3D data with a deformable parametric model. In Robert Cipolla, editor, 4th European Conference on Computer Vision (ECCV'96), volume vol 1, Cambridge, April 1996. [bibtex-entry]



305. S. Cotin, H. Delingette, and N. Ayache. Real Time Volumetric Deformable Models for Surgery Simulation. In Visualization in Biomedical Computing, Proceedings, volume 1131 of Lecture Notes in Computer Science, September 1996. Springer. Keyword(s): conference, simulation. [bibtex-entry]



306. S. Cotin, H. Delingette, J.-M. Clement, V. Tassetti, J. Marescaux, and N. Ayache. Volumetric Deformable Models for Simulation of Laparoscopic Surgery. In Proceedings of the International Symposium on Computer and Communication Systems for Image Guided Diagnosis and Therapy, Computer Assisted Radiology (CAR'96), volume 1124 of International Congress Series, June 1996. Elsevier. Keyword(s): conference, simulation. [bibtex-entry]



307. S. Cotin, H. Delingette, J-M. Clément, V. Tassetti, J. Marescaux, and N. Ayache. Geometric and Physical Representations for a Simulator of Hepatic Surgery. In Medecine Meets Virtual Reality IV, volume 29 of Studies in Health Technology and Informatics, San Diego, USA, pages 139-151, January 1996. IOS Press. Keyword(s): conference, simulation, Virtual Reality, Simulation, Surgery. [bibtex-entry]



308. S. Cotin, H. Delingette, J-M. Clément, V. Tassetti, J. Marescaux, and N. Ayache. Simulation de chirurgie hépatique avec système de retour de forces. In Interface to Real and Virtual Worlds, pages 139-148, May 1996. AJIIMD. Keyword(s): workshop, simulation, Virtual Reality, Simulation, Surgery. [bibtex-entry]



309. J. Feldmar, G. Malandain, J. Declerck, and N. Ayache. Extension of the ICP Algorithm to Non-Rigid Intensity-Based Registration of 3D Volumes. In Mathematical Methods in Biomedical Image Analysis, San Francisco, California, USA, June 21-22 1996. Keyword(s): registration, matching, deformations. [bibtex-entry]



310. S. Gilles, M. Brady, J.-P. Thirion, and N. Ayache. Bias Field Correction and Segmentation of MR Images. In Visualization in Biomedical Computing, VBC'96, Hamburg (D), September 1996. [bibtex-entry]



311. M.L. Goris, J. Declerck, J. Feldmar, N. Ayache, and W. Pace. Quantification of myocardial pefusion studies after a morphological match to a template. In Western Regional Meeting, Society of Nuclear Medicine, July 1996. Keyword(s): Matching, Heart, SPECT, Atlas. [bibtex-entry]



312. O. Migneco, J.-P. Thirion, M. Benoit, G. Malandain, P. Robert, N. Ayache, and J. Darcourt. Une étude TEMP d'activation mnésique réalisée grâce à des recalages d'images 3D. In Actes du congrès sur la Méthodologie en imagerie fonctionnelle cérébrale, Lyon, France, December 1996. [bibtex-entry]



313. Xavier Pennec and Nicholas Ayache. Quelques problèmes posés par la gestion des primitives géométriques en vision par ordinateur. In Journées ORASIS, pages 111-116, May 1996. Keyword(s): geometry, statistics, uncertainty, Riemannian geometry. [bibtex-entry]



314. Xavier Pennec and Nicholas Ayache. Randomness and Geometric Features in Computer Vision. In IEEE Conf. on Computer Vision and Pattern Recognition (CVPR'96), San Francisco, Cal, USA, pages 484-491, June 1996. Note: Published in J. of Math. Imag. and Vision 9(1), July 1998, p. 49-67. Keyword(s): geometry, statistics, registration, uncertainty, Riemannian geometry. [bibtex-entry]



315. G. Subsol, J.-Ph. Thirion, and N. Ayache. A General Scheme for Automatically Building 3D Morphometric Anatomical Atlases: application to a Skull and a Brain Atlas. In 16th L.A.S.R. Workshop Image Fusion And Shape Variability Techniques, Leeds (UK), pages 115-122, July 1996. Keyword(s): registration, matching, atlas. [bibtex-entry]



316. G. Subsol, J.-Ph. Thirion, and N. Ayache. Application of an Automatically Built 3D Morphometric Brain Atlas: Study of Cerebral Ventricle Shape. In K. H. Höhne, editor, VBC'96, Lecture Notes in Computer Science, Hamburg (D), September 1996. Springer. Keyword(s): registration, matching, atlas. [bibtex-entry]



317. G. Subsol, J.-Ph. Thirion, and N. Ayache. Some applications of an automatically built 3D morphometric skull atlas. In H. Lemke, K. Inamura, A. Farman, and F. Vannier, editors, Computer Assisted Radiology, Paris (France), pages 339-344, June 1996. Keyword(s): atlas. [bibtex-entry]



318. G. Subsol, J.-Ph. Thirion, and N. Ayache. Une méthode générale pour construire automatiquement des atlas anatomiques morphométriques : application à un atlas du crâne. In Reconnaissance des Formes et Intelligence Artificielle, volume 1, Rennes, pages 159-168, January 1996. AFCET/AFIA. Keyword(s): skull, atlas. [bibtex-entry]



319. G. Subsol, J.-P. Thirion, and N. Ayache. Une méthode générale pour construire automatiquement des atlas anatomiques morphométriques : application à un atlas du crâne. In Actes du 10eme congrès en Reconnaissance des formes et Intelligence Artificielle (RFIA'96), Rennes (France), January 1996. Note: Accepté pour publication.[bibtex-entry]



320. N. Ayache. Medical Computer Vision, Virtual Reality and Robotics. In Proceedings of the British Machine Vision Conference, Birmingham, September 1995. [bibtex-entry]



321. N. Ayache, J. Feldmar, G. Malandain, E. Maurincomme, C. Picard, and Y. Trousset. Recalage sans cadre stéréotaxique d'images volumiques et projectives en radiologie interventionnelle. In Mini colloque INSERM de radiologie interventionnelle, Paris, June 1995. [bibtex-entry]



322. E. Bardinet, L.D. Cohen, and N. Ayache. Superquadrics and free-form deformations: a global model to fit and track 3D medical data. In Proceedings of the Conference on Computer Vision, Virtual Reality and Robotics in Medecine (CVRMed'95), volume 905 of Lecture Notes in Computer Science, Nice, France, April 1995. Springer. Keyword(s): FFD, Superquadrique, Deformations, motion tracking. [bibtex-entry]



323. E. Bardinet, L.D. Cohen, and N. Ayache. Tracking medical 3D data with a parametric deformable model. In IEEE Symposium on Computer Vision, Coral Gables, Florida, November 1995. [bibtex-entry]



324. F. Betting, J. Feldmar, N. Ayache, and F. Devernay. A new framework for fusing stereo images with volumetric medical images. In Proceedings of the Conference on Computer Vision, Virtual Reality and Robotics in Medecine (CVRMed'95), volume 905 of Lecture Notes in Computer Science, Nice, pages 30-39, April 1995. Springer. [bibtex-entry]



325. S. Cotin, H. Delingette, and N. Ayache. New Perspectives for Realistic Simulations of Hepatic Surgery. In Actes du Congrès Mondial de Télémedecine, Toulouse, France, December 1995. Keyword(s): workshop, simulation. [bibtex-entry]



326. J. Declerck, G. Subsol, J.-P. Thirion, and N. Ayache. Automatic retrieval of anatomical structures in 3D medical images. In N. Ayache, editor, Proceedings of the Conference on Computer Vision, Virtual Reality and Robotics in Medecine (CVRMed'95), volume 905 of Lecture Notes in Computer Science, Nice (France), pages 153-162, April 1995. Springer. [bibtex-entry]



327. J. Feldmar, N. Ayache, and F. Betting. 3D-2D projective registration of free-form curves and surfaces. In IEEE Proceedings of the Fifth International Conference on Computer Vision (ICCV'95), Cambridge, Ma, pages 549-556, June 1995. [bibtex-entry]



328. G. Subsol, J.-P. Thirion, and N. Ayache. A General Scheme for Automatically Building 3D Morphometric Anatomical Atlases: application to a Skull Atlas. In Proceedings of the Conference on Medical Robotics and Computer Assisted Surgery (MRCAS'95), Baltimore, November 1995. Keyword(s): registration, matching, atlas. [bibtex-entry]



329. S. Benayoun, N. Ayache, and I. Cohen. Mouvement de structures 2D déformables : Utilisation de caractéristiques géométriques différentielles. In AFCET'94, 9ème Congrès Reconnaissance des Formes et Intelligence Artificielle, Paris, Janvier 1994. [bibtex-entry]



330. J. Feldmar and N. Ayache. Locally Affine Registration of Free-Form Surfaces. In Computer Vision and Pattern Recognition (CVPR'94), Seattle, USA, pages 496-501, June 1994. [bibtex-entry]



331. Alexis Gourdon and Nicholas Ayache. Recalage d'une courbe sur une surface en utilisant des propriétés différentielles. In AFCET'94, 9ème Congrès Reconnaissance des Formes et Intelligence Artificielle, Paris, Janvier 1994. [bibtex-entry]



332. Chahab Nastar and Nicholas Ayache. Classification of Non-rigid Motion in 3D Images using Physics-Based Vibration Analysis. In Proceedings of the IEEE Workshop on Biomedical Image Analysis, Seattle, June 1994. [bibtex-entry]



333. Xavier Pennec and Nicholas Ayache. An ${{\cal O}}(n^2)$ Algorithm for 3D Substructure Matching of Proteins. In A. Califano, I. Rigoutsos, and H.J. Wolson, editors, Shape and Pattern Matching in Computational Biology -- Proc. First Int. Workshop, Seattle, Wash, June 20, 1994, pages 25-40, 1994. Plenum Publishing. Note: Published in Bioinformatics 14(6), 1998, p. 516-522. Keyword(s): registration, matching, protein structure. [bibtex-entry]



334. Gérard Subsol, Jean-Philippe Thirion, and Nicholas Ayache. Non-Rigid Registration for Building 3D Anatomical Atlases. In The 12th International Conference on Pattern Recognition, Jerusalem (Israel), October 1994. IAPR. Keyword(s): registration, matching, atlas, deformations. [bibtex-entry]



335. Gérard Subsol, Jean-Philippe Thirion, and Nicholas Ayache. Steps Towards Automatic Building of Anatomical Atlases. In Visualization in Biomedical Computing '94, October 1994. Keyword(s): atlas. [bibtex-entry]



336. N. Ayache, A. Guéziec, and J.-P. Thirion. Accurate and Robust Registration of 3D medical images using crest lines. In 1st Asian Conference on Computer Vision, ACCV'93, November 1993. Note: Osaka, Japon. Keyword(s): registration, matching. [bibtex-entry]



337. N. Ayache, A. Guéziec, J.-P. Thirion, and A. Gourdon. Evaluating 3D Registration of CT-Scan Images Using Crest Lines. In Proceedings of SPIE'93, Mathematical Methods in Medical Imaging II, volume 2035-06, San Diego, California, USA, pages 60-71, July 14-15 1993. Keyword(s): registration, matching. [bibtex-entry]



338. Laurent D. Cohen, Eric Bardinet, and Nicholas Ayache. Reconstruction of Digital Terrain Model with a Lake. In Proceedings of SPIE'93, Geometric Methods in Computer Vision, San Diego, California, USA, July 1993. Note: Available as INRIA Research Report 1824, December 1992. [bibtex-entry]



339. A. Guéziec and N. Ayache. Large Deformable Splines, Crest Lines and Matching. In Proceedings of SPIE'93, Geometric Methods in Computer Vision II, volume 2031-28, San Diego, California, USA, pages 316-327, July 12-13 1993. Keyword(s): registration, matching. [bibtex-entry]



340. A. Guéziec and N. Ayache. New Developments On Geometric Hashing for Matching Curves. In Proceedings of the conference on Computer Vision and Pattern Recognition, New York, USA, June 1993. IEEE. [bibtex-entry]



341. Chahab Nastar and Nicholas Ayache. A Physically Based Analysis of Deformations in 3D Images. In Proceedings of SPIE'93, Geometric Methods in Computer Vision II, San Diego, California, USA, July 1993. [bibtex-entry]



342. Chahab Nastar and Nicholas Ayache. Applications de modèles déformables physiques a l'analyse des images échocardiographiques. In soumis au Symposium Echocardiographie et Analyse d'Images Ventriculaires, Dijon, Mars 1993. [bibtex-entry]



343. Chahab Nastar and Nicholas Ayache. Fast Segmentation, Tracking, and Analysis of Deformable Objects. In Proceedings of the Fourth International Conference on Computer Vision (ICCV'93), Berlin, May 1993. IEEE. [bibtex-entry]



344. Chahab Nastar and Nicholas Ayache. Non-Rigid Motion Analysis in Medical Images: a Physically Based Approach. In Proceedings of the 13th International Conference on Information Processing in Medical Imaging (IPMI'93), Flagstaff, Arizona, USA, June 1993. Keyword(s): registration, matching, deformations, motion tracking. [bibtex-entry]



345. Gérard Subsol, Jean-Philippe Thirion, and Nicholas Ayache. Reconnaissance de modèles génériques à l'aide d'un réseau spatial de lignes actives. Application au traitement d'images médicales. In Quatrièmes Journées ORASIS, Mulhouse, France, pages 174-177, 11--14 Octobre 1993. GDR-PRC Communication Homme-Machine, Pôle Vision. [bibtex-entry]



346. S. Benayoun, O. Monga, A. Guéziec, and N. Ayache. Using Surface Curvatures for 3-D Image Registration. In Proceedings of the Eleventh Conference on Computer Applications in Radiology (S'CAR92), Baltimore, Maryland U.S.A., June 1992. [bibtex-entry]



347. I. Cohen, N. Ayache, and P. Sulger. Tracking Points on Deformable Objects Using Curvature Information. In 2nd European Conference on Computer Vision (ECCV'92), volume 588 of Lecture Notes in Computer Science, Santa Margherita Ligure, Italy, pages 458-466, May 1992. Springer. [bibtex-entry]



348. I. Cohen, L.D. Cohen, and N. Ayache. Using Deformable Surface to Segment 3-D images and Infer Differential Structures. In 2nd European Conference on Computer Vision (ECCV'92), volume 588 of Lecture Notes in Computer Science, Santa Margherita Ligure, Italy, pages 648-652, May 1992. Springer. [bibtex-entry]



349. A. Guéziec and N. Ayache. Smoothing and Matching of 3-D Space Curves. In Proceedings of the Second European Conference on Computer Vision 1992, Santa Margherita Ligure, Italy, May 1992. [bibtex-entry]



350. I.L. Herlin and N. Ayache. Features Extraction and Analysis Methods for Sequences of Ultrasound Images. In 2nd European Conference on Computer Vision (ECCV'92), Santa Margherita Ligure, Italy, Mai 1992. [bibtex-entry]



351. J.-M. Rocchisani, F. Aissani, I. Cohen, J. Bittoun, N. Ayache, and Y. Pouliquen. Visualisation 3-D de la Géométrie du segment Antérieur de l'oeil in vitro à partir d'images RMN haute résolution. In Vème Congrés du Groupe de Recherche sur les Applications du Magnétisme en Médecine, Mai 1992. [bibtex-entry]



352. J.-M. Rocchisani, I. Cohen, F. Aissani, J. Bittoun, N. Ayache, and Y. Pouliquen. 3D Analysis of the Anterior Segment of Human eye in vitro from High Resolution Magnetic Resonance Imaging. In Conference of the IEEE Engineering in Medicine and Biology Society, Paris, October 1992. [bibtex-entry]



353. J.-Ph. Thirion, A. Gourdon, O. Monga, A. Guéziec, and N. Ayache. Automatic Registration of 3D Images Using Surface Curvature. In 14th Ann. Int. Conf. of the IEEE Engineering in Medecine and Biology Society, Paris, October 1992. [bibtex-entry]



354. J.-Ph. Thirion, A. Gourdon, O. Monga, A. Guéziec, and N. Ayache. Fully Automatic Registration of 3D cat-scan images using surface curvature. In IEEE EMBS satellite symposium on 3D Advanced Image Processing in Medecine, Rennes, November 1992. [bibtex-entry]



355. J.-Ph. Thirion, O. Monga, S. Benayoun, A. Guéziec, and N. Ayache. Automatic Registration of 3D Images Using Surface Curvature. In IEEE Int. Symp. on Optical Applied Science and Engineering, San-Diego, July 1992. [bibtex-entry]



356. G. Malandain, G. Bertrand, and N. Ayache. Topological classification in digital space. In A.C.F. Colchester and D.J. Hawkes, editors, XIIth international conference on Information Processing in Medical Imaging (IPMI), volume 511 of LNCS, Wye, Kent, England, pages 300-313, July 1991. Springer. [bibtex-entry]



357. G. Malandain, G. Bertrand, and N. Ayache. Topological segmentation of discrete surfaces. In Proceedings of the conference on Computer Vision and Pattern Recognition, Lahaina, Maui, Hawaii, pages 444-449, June 3--6 1991. IEEE. [bibtex-entry]