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Publications of Ender Konukoglu

Thesis

  1. Ender Konukoglu. Modeling Glioma Growth and Personalizing Growth Models in Medical Images. PhD Thesis, Université Nice Sophia-Antipolis, February 2009. [bibtex-entry]


Articles in journal, book chapters

  1. Bjoern Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elisabeth Gerstner, Marc-Andre Weber, Tal Arbel, Brian Avants, Nicholas Ayache, Patricia Buendia, Louis Collins, Nicolas Cordier, Jason Corso, Antonio Criminisi, Tilak Das, Hervé Delingette, Cagatay Demiralp, Christopher Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan Iftekharuddin, Raj Jena, Nigel John, Ender Konukoglu, Danial Lashkari, Jose Antonio Mariz, Raphael Meier, Sergio Pereira, Doina Precup, S. J. Price, Tammy Riklin-Raviv, Syed Reza, Michael Ryan, Lawrence Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos Silva, Nuno Sousa, Nagesh Subbanna, Gabor Szekely, Thomas Taylor, Owen Thomas, Nicholas Tustison, Gozde Unal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, Darko Zikic, Marcel Prastawa, Mauricio Reyes, and Koen Van Leemput. The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). IEEE Transactions on Medical Imaging, 34(10):1993-2024, October 2014. [bibtex-entry]


  2. Jan Unkelbach, Bjoern Menze, Ender Konukoglu, Florian Dittmann, Nicholas Ayache, and Helen Shi. Radiotherapy planning for glioblastoma based on a tumor growth model: implications for spatial dose redistribution. Physics in Medicine and Biology, December 2013. [bibtex-entry]


  3. Jan Unkelbach, Bjoern Menze, Ender Konukoglu, Florian Dittmann, Matthieu Le, Nicholas Ayache, and Helen Shi. Radiotherapy planning for glioblastoma based on a tumor growth model: improving target volume delineation. Physics in Medicine and Biology, December 2013. [bibtex-entry]


  4. Ezequiel Geremia, Darko Zikic, Olivier Clatz, Bjoern H. Menze, Ben Glocker, Ender Konukoglu, Jamie Shotton, O. M. Thomas, S. J. Price, Tilak Das, Raj Jena, Nicholas Ayache, and Antonio Criminisi. Classification Forests for Semantic Segmentation of Brain Lesions in Multi-channel MRI. In Antonio Criminisi and J. Shotton, editors, Decision Forests for Computer Vision and Medical Image Analysis, Advances in Computer Vision and Pattern Recognition, pages 245-260. Springer London, 2013. [bibtex-entry]


  5. Ezequiel Geremia, Olivier Clatz, Bjoern H. Menze, Ender Konukoglu, Antonio Criminisi, and Nicholas Ayache. Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel Magnetic Resonance Images. NeuroImage, 57(2):378-90, July 2011. [bibtex-entry]


  6. E. Konukoglu, J. Relan, U. Cilingir, B. Menze, P. Chinchapatnam, A. Jadidi, H. Cochet, M. Hocini, H. Delingette, P. Jaïs, M. Haïssaguerre, N. Ayache, and M. Sermesant. Efficient Probabilistic Model Personalization Integrating Uncertainty on Data and Parameters: Application to Eikonal-Diffusion Models in Cardiac Electrophysiology. Progress in Biophysics and Molecular Biology, 107(1):134-146, October 2011. [bibtex-entry]


  7. E. Pernod, M. Sermesant, E. Konukoglu, J. Relan, H. Delingette, and N. Ayache. A Multi-Front Eikonal Model of Cardiac Electrophysiology for Interactive Simulation of Radio-Frequency Ablation. Computers and Graphics, 35:431-440, 2011. [bibtex-entry]


  8. K.M Pohl, E. Konukoglu, S. Novellas, N. Ayache, A. Fedorov, I.-F. Talos, A. Golby, W.M. Wells, R. Kikinis, and P.M. Black. A New Metric for Detecting Change in Slowly Evolving Brain Tumors: Validation in Meningioma Patients. Neurosurgery, 68(1 Suppl Operative):225-33, March 2011. [bibtex-entry]


  9. B H Menze, E Stretton, E Konukoglu, and N. Ayache. Image-based modeling of tumor growth in patients with glioma.. In C S Garbe, R Rannacher, U Platt, and T Wagner, editors, Optimal control in image processing. Springer, Heidelberg/Germany, 2011. [bibtex-entry]


  10. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating Glioma Invasion Margin in Brain Magnetic Resonance Images: Suggesting New Irradiation Margins. Medical Image Analysis, 14(2):111-125, 2010. [bibtex-entry]


  11. Ender Konukoglu, Olivier Clatz, Bjoern H. Menze, Marc-André Weber, Bram Stieltjes, Emmanuel Mandonnet, Hervé Delingette, and Nicholas Ayache. Image Guided Personalization of Reaction-Diffusion Type Tumor Growth Models Using Modified Anisotropic Eikonal Equations. IEEE Transactions on Medical Imaging, 29(1):77-95, 2010. [bibtex-entry]


  12. Ender Konukoglu, Olivier Clatz, Hervé Delingette, and Nicholas Ayache. Personalization of Reaction-Diffusion Tumor Growth Models in MR Images: Application to Brain Gliomas Characterization and Radiotherapy Planning. In Thomas S. Deisboeck and Georgios Stamatakos, editors, Multiscale Cancer Modeling, Chapman & Hall/CRC Mathematical & Computational Biology. CRC Press, December 2010. [bibtex-entry]


  13. Ender Konukoglu, Xavier Pennec, Olivier Clatz, and Nicholas Ayache. Tumor Growth Modeling in Oncological Image Analysis. In I. Bankman, editor, Handbook of Medical Image Processing and Analysis - New edition, chapter 18, pages 297-307. Academic Press, December 2008. ISBN: 13: 978-0-12-373904-9. [bibtex-entry]


  14. Elsa Angelini, Olivier Clatz, Emmanuel Mandonnet, Ender Konukoglu, Laurent Capelle, and Hugues Duffau. Glioma Dynamics and Computational Models: A Review of Segmentation, Registration, and In Silico Growth Algorithms and their Clinical Applications. Current Medical Imaging Reviews, 3(4):262-176, 2007. [bibtex-entry]


  15. Olivier Clatz, Emmanuel Mandonnet, Stéphane Chanalet, Christine Lebrun, Ender Konukoglu, Hervé Delingette, Nicholas Ayache, and Pierre-Yves Bondiau. Modèles Biomathématiques de Croissance Des Gliomes : Recherche en Informatique et Perspectives en Neuro-oncologie. Neurologies, 9(93):665-667, 2006. [bibtex-entry]


Conference articles

  1. Florian Dittmann, Bjoern Menze, Ender Konukoglu, and Jan Unkelbach. Use of Diffusion Tensor Images in Glioma Growth Modeling for Radiotherapy Target Delineation. In Multimodal Brain Image Analysis, volume 8159 of Lecture Notes in Computer Scienc, Nagoya, Japan, pages 63-73, September 2013. [bibtex-entry]


  2. J. Unkelbach, Bjoern H. Menze, A. Motamedi, F. Dittmann, Ender Konukoglu, Nicholas Ayache, and H. Shih. Glioblastoma growth modeling for radiotherapy target delineation.. In Proc MICCAI Workshop on Image-Guidance and Multimodal Dose Planning in Radiation Therap., pages 12 pages, 2012. [bibtex-entry]


  3. Bjoern H. Menze, Koen Van Leemput, Antti Honkela, Ender Konukoglu, Marc-Andre Weber, Nicholas Ayache, and Polina Golland. A Generative Approach for Image-Based Modeling of Tumor Growth. In G. Szekely and H. Hahn, editors, Proceedings of Information Processing in Medical Imaging (IPMI'11), LNCS 6801, pages 13p, 2011. [bibtex-entry]


  4. Ezequiel Geremia, Bjoern H. Menze, Olivier Clatz, Ender Konukoglu, Antonio Criminisi, and Nicholas Ayache. Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), LNCS, Beijing, China, September 2010. Springer. [bibtex-entry]


  5. Ender Konukoglu, W.M. Wells, S. Novellas, Nicholas Ayache, R. Kikinis, P.M. Black, and K.M. Pohl. Monitoring Slowly Evolving Tumors. In In Proceedings of the IEEE Internation Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 2008. [bibtex-entry]


  6. E. Konukoglu, O. Clatz, Pierre-Yves Bondiau, Maxime Sermesant, H. Delingette, and N. Ayache. Towards an Identification of Tumor Growth Parameters from Time Series of Images. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 4791 of LNCS, Brisbane, Australia, pages 549-556, October 2007. Springer. [bibtex-entry]


  7. E. Konukoglu, M. Sermesant, O. Clatz, J.-M. Peyrat, H. Delingette, and N. Ayache. A Recursive Anisotropic Fast Marching Approach to Reaction Diffusion Equation: Application to Tumor Growth Modeling. In Proceedings of the 20th International Conference on Information Processing in Medical Imaging (IPMI'07), volume 4584 of LNCS, pages 686-699, 2-6 July 2007. [bibtex-entry]


  8. M. Sermesant, E. Konukoglu, H. Delingette, Y. Coudiere, P. Chinchaptanam, K.S. Rhode, R. Razavi, and N. Ayache. An anisotropic multi-front fast marching method for real-time simulation of cardiac electrophysiology. In Proceedings of Functional Imaging and Modeling of the Heart 2007 (FIMH'07), volume 4466 of LNCS, pages 160-169, 7-9 June 2007. [bibtex-entry]


  9. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating Tumor Invasion Margins for Physiologically Determined Radiotherapy Regions. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, number 4190 of LNCS, pages 338-346, 2-4 October 2006. Keyword(s): Tumor growth modeling, Glioma, brain tumors, radiotherapy, hamilton jacobi, DT-MRI, DTI, Diffusion Tensor, fisher kolmogorov, F-KPP. [bibtex-entry]


Internal reports

  1. Xavier Pennec, Curzio Basso, Younes Boudjemline, Stanley Durrleman, Ender Konukoglu, Tommaso Mansi, Kristin McLeod, Giacomo Pongiglione, Matteo Santoro, Maxime Sermesant, Bertrand Stos, Nicolas Toussaint, and Gianluca Trocchio. Third generation disease models: Image analysis tools, pediatric heart diseases, inflammatory diseases and brain tumors. Deliverables D11.4, European project Health-e-Child (IST-2004-027749), April 2010. [bibtex-entry]


  2. Xavier Pennec, Curzio Basso, Younes Boudjemline, Stanley Durrleman, Ender Konukoglu, Tommaso Mansi, Giacomo Pongiglione, Matteo Santoro, Maxime Sermesant, Bertrand Stos, Nicolas Toussaint, and Gianluca Trocchio. First generation disease models: Image analysis tools, pediatric heart diseases, inflammatory diseases and brain tumors. Deliverables D11.2, European project Health-e-Child (IST-2004-027749), June 2007. [bibtex-entry]


  3. Martin Huber, Xavier Pennec, Alessandro Verri, Harry Dimitropoulos, Maxime Sermesant, Cristian Mircean, Sonja Zilner, Homer Metaxas, Michael Lynch, Ender Konukoglu, Maria-Luisa Garre, Anna Charisi, Curzio Basso, and Elise Arnaud. State of the art report on disease models, decision support systems and knwoledge discovery for pediatric oncology, cardiology and rheumatology. Deliverables 11.1, 12.1, 13.1, European project Health-e-Child (IST-2004-027749), June 2006. [bibtex-entry]


Miscellaneous

  1. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating tumor invasion margins for physiologically determined radiotherapy regions. Presented in DIMACS Workshop: Computational Tumor Modeling, 2006. [bibtex-entry]



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Last modified: Thu Dec 13 12:30:04 2018
Author: epione-publi.

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