Publications of Grégoire Malandain

1. Grégoire Malandain. Les mesures de similarité pour le recalage des images médicales. Habilitation à diriger des recherches, Université Nice Sophia-Antipolis, March 2006. [bibtex-entry]



2. G. Malandain. Filtrage, topologie et mise en correspondance d'images médicales multidimensionnelles. Thèse de sciences, Ecole Centrale de Paris, Septembre 1992. [bibtex-entry]

1. Antoine Verger, Yalcin Yagdigul, Axel van Der Gucht, Sylvain Poussier, Eric Guedj, Louis Maillard, Grégoire Malandain, Gabriela Hossu, Renaud Fay, Gilles Karcher, and Pierre-Yves Marie. Temporal epilepsy lesions may be detected by the voxel-based quantitative analysis of brain FDG-PET images using an original block-matching normalization software. Annals of Nuclear Medicine, 30(4):272-278, May 2016. Keyword(s): Block-matching algorithm, FDG-PET, Mesial temporal lobe epilepsy, Spatial normalization, Statistical parametric mapping. [bibtex-entry]



2. Thomas Benseghir, Grégoire Malandain, and Régis Vaillant. A tree-topology preserving pairing for 3D/2D registration. International Journal of Computer Assisted Radiology and Surgery, 10(6):913-923, 2015. Note: Information Processing in Computer-Assisted Interventions (IPCAI) 2015 Special Issue. Keyword(s): Registration, Tree, Coronary Arteries, X-ray, Navigation, Iterative Closest Curve. [bibtex-entry]



3. Marine Breuilly, Grégoire Malandain, Julien Guglielmi, Robert Marsault, Thierry Pourcher, Philippe R. Franken, and Jacques Darcourt. Amplitude-based data selection for optimal retrospective reconstruction in micro-SPECT. Physics in Medicine and Biology, 58(8):2657-2674, April 2013. [bibtex-entry]



4. Christophe Person, Valérie Louis-Dorr, Sylvain Poussier, Olivier Commowick, Grégoire Malandain, Louis Maillard, Didier Wolf, Nicolas Gilet, Véronique Roch, Gilles Karcher, and Pierre-Yves Marie. Voxel-based quantitative analysis of brain images from F-18 Fluorodeoxyglucose Positron Emission Tomography with a Block-Matching algorithm for spatial normalization. Clinical Nuclear Medicine, 37(3):268-273, 2012. HAL ID: hal-00651731. [bibtex-entry]



5. Juliette Thariat, Pierre-Yves Marcy, A. Lacout, Liliane Ramus, T. Girinsky, Y. Pointreau, and Grégoire Malandain. Radiotherapy and radiology: joint efforts for modern radiation planning and practice. Diagn Interv Imaging, 93(5):342-50, May 2012. [Abstract] [bibtex-entry]



6. Juliette Thariat, Liliane Ramus, Philippe Maingon, Guillaume Odin, Vincent Gregoire, Vincent Darcourt, Nicolas Guevara, Marie-Helene Orlanducci, Serge Marcie, Gilles Poissonnet, Pierre-Yves Marcy, Alex Bozec, Olivier Dassonville, Laurent Castillo, Francois Demard, Jose Santini, and Grégoire Malandain. DENTALMAPS: Automatic Dental Delineation for Radiotherapy Planning in Head-and-neck Cancer. Int J Radiat Oncol Biol Phys, 82(5):1858-65, April 2012. [Abstract] [bibtex-entry]



7. Nicholas Ayache, Olivier Clatz, Hervé Delingette, Grégoire Malandain, Xavier Pennec, and Maxime Sermesant. Vers un patient numérique personnalisé pour le diagnostic et la thérapie guidés par l'image. Médecine / Sciences, 27:208-213, March 2011. [bibtex-entry]



8. Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Gregoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie R. McClelland, Sebastien Ourselin, Sascha E.A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, Rene Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas Tustison, Brian Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, and Josien P.W. Pluim. Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge. IEEE Trans Med Imaging, 30(11):1901-20, November 2011. [Abstract] [bibtex-entry]



9. M Cohen, C Lebrun, D Aufauvre, S Chanalet, C Filleau-Bertogliatti, W Camu, P Thomas, G Malandain, and P Clavelou. [Longitudinal study of health related quality of life in multiple sclerosis: correlation with MRI parameters]. Rev Neurol (Paris), 166(11):894-900, November 2010. Note: [In French]. Keyword(s): Adolescent, Adult, Atrophy, Brain, pathology, Cognition, physiology, Contrast Media, Disease Progression, Female, Gadolinium, Humans, Image Processing Computer-Assisted, Interferon Type I, therapeutic use, Longitudinal Studies, Magnetic Resonance Imaging, Male, Middle Aged, Multiple Sclerosis Chronic Progressive, pathology, Neuropsychological Tests, Quality of Life, Recombinant Proteins, Young Adult. [Abstract] [bibtex-entry]



10. Romain Fernandez, Pradeep Das, Vincent Mirabet, Eric Moscardi, Jan Traas, Jean-Luc Verdeil, Grégoire Malandain, and Christophe Godin. Imaging plant growth in 4-D: robust tissue reconstruction and lineaging at cell resolution. Nature Methods, 7(7):547-553, 2010. [Abstract] [bibtex-entry]



11. Liliane Ramus, Juliette Thariat, Pierre-Yves Marcy, Yoann Pointreau, Guillaume Bera, Olivier Commowick, and Grégoire Malandain. Outils de contourage, utilisation et construction d'atlas anatomiques : exemples des cancers de la tete et du cou. Cancer radiothérapie, 14(3):206-12, 2010. Note: In French. [Abstract] [bibtex-entry]



12. Éric Bardinet, Manik Bhattacharjee, Didier Dormont, Bernard Pidoux, Grégoire Malandain, Michael Schupbach, Nicholas Ayache, Philippe Cornu, Yves Agid, and Jerome Yelnik. A three-dimensional histological atlas of the human basal ganglia. II. Atlas deformation strategy and evaluation in deep brain stimulation for Parkinson disease.. Journal of Neurosurgery, 110(2):208-19, February 2009. Keyword(s): Basal Ganglia, pathology, Brain Mapping, methods, Deep Brain Stimulation, methods, Humans, Image Interpretation Computer-Assisted, methods, Imaging Three-Dimensional, methods, Magnetic Resonance Imaging, methods, Medical Illustration, Microelectrodes, Microscopy, Parkinson Disease, pathology, Red Nucleus, pathology, Sensitivity and Specificity, Substantia Nigra, pathology, Subthalamic Nucleus, pathology. [Abstract] [bibtex-entry]



13. R Sims, A Isambert, V Gregoire, F Bidault, L Fresco, J Sage, J Mills, J Bourhis, D Lefkopoulos, Olivier Commowick, M Benkebil, and Grégoire Malandain. A pre-clinical assessment of an atlas-based automatic segmentation tool for the head and neck. Radiotherapy Oncology, 93(3):474-8, December 2009. [Abstract] [bibtex-entry]



14. Jean-Christophe Souplet, Christine Lebrun, Stéphane Chanalet, Nicholas Ayache, and Grégoire Malandain. Revue des approches de segmentation des lésions de sclérose en plaques dans les séquences conventionnelles IRM. Revue Neurologique, 165(1):7-14, 2009. Note: In french. [bibtex-entry]



15. Nicholas Ayache, Olivier Clatz, Hervé Delingette, Grégoire Malandain, Xavier Pennec, and Maxime Sermesant. Asclepios: a Research Project-Team at INRIA for the Analysis and Simulation of Biomedical Images. In Y. Bertot, G. Huet, J.-J. Lévy, and G. Plotkin, editors, From semantics to computer science: essays in honor of Gilles Kahn, pages 415-436. Cambridge University Press, 2009. [bibtex-entry]



16. Olivier Commowick, Vincent Arsigny, Aurélie Isambert, Jimena Costa, Frédéric Dhermain, François Bidault, Pierre-Yves Bondiau, Nicholas Ayache, and Grégoire Malandain. An efficient locally affine framework for the smooth registration of anatomical structures. Medical Image Analysis, 12(4):427-41, August 2008. Keyword(s): Algorithms, Brain, anatomy & histology, Diagnostic Imaging, methods, Humans, Image Processing Computer-Assisted, Radiotherapy Planning Computer-Assisted, methods, Sensitivity and Specificity. [Abstract] [bibtex-entry]



17. Olivier Commowick, Vincent Grégoire, and Grégoire Malandain. Atlas-Based Delineation of Lymph Node Levels in Head and Neck Computed Tomography Images. Radiotherapy Oncology, 87(2):281-289, 2008. [bibtex-entry]



18. A Isambert, G Bonniaud, F Lavielle, G Malandain, and D Lefkopoulos. A phantom study of the accuracy of CT, MR and PET image registrations with a block matching-based algorithm. Cancer radiothérapie, 12(8):800-8, December 2008. Keyword(s): Algorithms, Automation, Brain, pathology, Head, Humans, Magnetic Resonance Imaging, methods, Phantoms Imaging, Positron-Emission Tomography, methods, Radiotherapy Planning Computer-Assisted, methods, Software, Tomography X-Ray Computed, methods. [Abstract] [bibtex-entry]



19. Aurélie Isambert, Frédéric Dhermain, François Bidault, Olivier Commowick, Pierre-Yves Bondiau, Grégoire Malandain, and Dimitri Lefkopoulos. Evaluation of an atlas-based automatic segmentation software for the delineation of brain organs at risk in a radiation therapy clinical context. Radiotherapy Oncology, 87(1):93-9, April 2008. Keyword(s): Algorithms, Brain Neoplasms, pathology, Female, Humans, Image Interpretation Computer-Assisted, methods, Magnetic Resonance Imaging, Male, Middle Aged, ROC Curve, Retrospective Studies, Software, Tomography X-Ray Computed. [Abstract] [bibtex-entry]



20. Tom Vercauteren, Nicholas Ayache, Nicolas Savoire, Grégoire Malandain, and Aymeric Perchant. Processing of In Vivo Fibered Confocal Microscopy Video Sequences. In Jens Rittscher, Raghu Machiraju, and Stephen T. C. Wong, editors, Microscopic Image Analysis for Life Science Applications, chapter 19, pages 441-463. Artech House, 2008. [bibtex-entry]



21. M Reyes, G Malandain, P M Koulibaly, M A Gonzalez-Ballester, and J Darcourt. Model-based respiratory motion compensation for emission tomography image reconstruction. Physics in Medicine and Biology, 52(12):3579-600, June 2007. [Abstract] [bibtex-entry]



22. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Grégoire Malandain, Sébastien Ourselin, Dominique Tandé, Carine Karachi, Nicholas Ayache, Philippe Cornu, and Yves Agid. A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data. NeuroImage, 34(2):618-38, January 2007. [Abstract] [bibtex-entry]



23. Grégoire Malandain. Applications de la géométrie discrète en imagerie médicale. In Géométrie discrète et images numériques, Traités IC2, pages 371-379. Hermès, 2007. [bibtex-entry]



24. C Bensa, C Bertogliati, S Chanalet, G Malandain, P Bedoucha, and C Lebrun. Early detection of cognitive impairment in relapsing-remitting multiple sclerosis: functional-anatomical correlations and longitudinal follow-up. Revue Neurologique, 162(12):1221-31, December 2006. Note: [In French]. [Abstract] [bibtex-entry]



25. Christophe Blondel, Grégoire Malandain, Régis Vaillant, and Nicholas Ayache. Reconstruction of Coronary Arteries from a Single Rotational X-Ray Projection Sequence. IEEE Transactions on Medical Imaging, 25(5):653-663, May 2006. Keyword(s): Angiocardiography, Coronarography, Image Motion Analysis, Image Reconstruction, Tomography. [Abstract] [bibtex-entry]



26. Céline Fouard, Grégoire Malandain, Steffen Prohaska, and Malte Westerhoff. Blockwise Processing Applied to Brain Microvascular Network Study. IEEE Transactions on Medical Imaging, 25(10):1319-1328, 2006. [Abstract] [bibtex-entry]



27. Alain Pitiot, Eric Bardinet, Paul M. Thompson, and Grégoire Malandain. Piecewise Affine Registration of Biological Images for Volume Reconstruction. Medical Image Analysis, 10(3):465-483, June 2006. Keyword(s): registration, clustering, reconstruction, histology, MRI. [Abstract] [bibtex-entry]



28. Arjan W Simonetti, Vedat A Elezi, Regine Farion, Gregoire Malandain, Christoph Segebarth, Chantal Remy, and Emmanuel L Barbier. A low temperature embedding and section registration strategy for 3D image reconstruction of the rat brain from autoradiographic sections. Journal of Neuroscience Methods, 158(2):242-50, December 2006. [Abstract] [bibtex-entry]



29. Tom Vercauteren, Aymeric Perchant, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy. Medical Image Analysis, 10(5):673-692, October 2006. Note: Annual Medical Image Analysis (MedIA) Best Paper Award 2006. PMID: 16887375. [bibtex-entry]



30. J.-D. Boissonnat, R. Chaine, P. Frey, G. Malandain, S. Salmon, E. Saltel, and M. Thiriet. From arteriographies to computational flow in saccular aneurisms: the INRIA experience. Medical Image Analysis, 9(2):133-143, April 2005. Keyword(s): 3D reconstruction, Aneurism, Finite element method, Mesh adaptation, Pulsatile flow. [Abstract] [bibtex-entry]



31. Pierre-Yves Bondiau, Gregoire Malandain, Stephane Chanalet, Pierre-Yves Marcy, Jean-Louis Habrand, Francois Fauchon, Philippe Paquis, Adel Courdi, Olivier Commowick, Isabelle Rutten, and Nicholas Ayache. Atlas-based automatic segmentation of MR images: validation study on the brainstem in radiotherapy context. Int J Radiat Oncol Biol Phys, 61(1):289-98, January 2005. Keyword(s): Algorithms, Anatomical Atlas, methods, Brain Neoplasms, pathology, Brain Stem, anatomy & histology, Humans, Image Interpretation Computer-Assisted, methods, Magnetic Resonance Imaging, methods, Medical Illustration, Observer Variation, Reproducibility of Results, Sensitivity and Specificity. [Abstract] [bibtex-entry]



32. Olivier Clatz, Maxime Sermesant, Pierre-Yves Bondiau, Hervé Delingette, Simon K. Warfield, Grégoire Malandain, and Nicholas Ayache. Realistic Simulation of the 3D Growth of Brain Tumors in MR Images Coupling Diffusion with Mass Effect. IEEE Transactions on Medical Imaging, 24(10):1334-1346, October 2005. Keyword(s): Tumor, brain, growth, model, simulation. [Abstract] [bibtex-entry]



33. Céline Fouard and Grégoire Malandain. 3-D chamfer distances and norms in anisotropic grids. Image and Vision Computing, 23(2):143-158, February 2005. Keyword(s): chamfer distance, anisotropic lattice, Farey triangulation. [Abstract] [bibtex-entry]



34. Grégoire Malandain and Mauricio Reyes. La tomographie en mouvement. Pour la science, 338:132-137, December 2005. [bibtex-entry]



35. Christophe Blondel, Régis Vaillant, Grégoire Malandain, and Nicholas Ayache. 3-D tomographic reconstruction of coronary arteries using a precomputed 4-D motion field. Physics in Medicine and Biology, 49(11):2197-2208, 2004. [bibtex-entry]



36. P.Y. Bondiau, G. Malandain, S. Chanalet, P.Y. Marcy, C. Foa, and N. Ayache. Traitement des images et radiothérapie. Cancer radiothérapie, 8(2):120-129, 2004. [Abstract] [bibtex-entry]



37. C Lebrun, D Rey, S Chanalet, V Bourg, C Bensa, M Chatel, N Ayache, and G Malandain. The contribution of automatic anatomical matching of sequential brain MRI scans in the monitoring of multiple sclerosis lesions. Revue Neurologique, 160(8-9):805-10, September 2004. Note: In French. Keyword(s): multiple sclerosis. [Abstract] [bibtex-entry]



38. Grégoire Malandain, Éric Bardinet, Koen Nelissen, and Wim Vanduffel. Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations. NeuroImage, 23(1):111-127, September 2004. [Abstract] [bibtex-entry]



39. R.R. Peeters, P. Kornprobst, M. Nikolova, S. Sunaert, T. Vieville, G. Malandain, R. Deriche, O. Faugeras, M. Ng, and P. Van Hecke. The use of superresolution techniques to reduce slice thickness in functional MRI. International Journal of Imaging Systems and Technology, 14(3):131-138, 2004. Note: Special issue on High Resolution Image Reconstruction. Keyword(s): fMRI, Super-Resolution algorithm, SNR. [Abstract] [bibtex-entry]



40. Pierre-Yves Bondiau, Grégoire Malandain, Pierre Chauvel, Frédérique Peyrade, Adel Courdi, Nicole Iborra, Jean-Pierre Caujolle, and Pierre Gastaud. Automatic three-dimensional model for protontherapy of the eye: Preliminary results. Medical Physics, 30(6):1013-1020, June 2003. [Abstract] [bibtex-entry]



41. P Hellier, C Barillot, I Corouge, B Gibaud, G Le Goualher, D L Collins, A Evans, G Malandain, N Ayache, G E Christensen, and H J Johnson. Retrospective evaluation of intersubject brain registration. IEEE Transactions on Medical Imaging, 22(9):1120-30, September 2003. [Abstract] [bibtex-entry]



42. J. Montagnat, M. Sermesant, H. Delingette, G. Malandain, and N. Ayache. Anisotropic filtering for model-based segmentation of 4D cylindrical echocardiographic images. Pattern Recognition Letters, 24(4-5):815-828, February 2003. Note: Special Issue on Ultrasonic Image Processing and Analysis. Keyword(s): anisotropic diffusion, 4D, Heart, segmentation, ultrasound, medical images, motion tracking. [bibtex-entry]



43. Grégoire Malandain and Jean-Daniel Boissonnat. Computing the Diameter of a Point Set. International Journal of Computational Geometry & Applications, 12(6):489-510, December 2002. Keyword(s): computational geometry, diameter, width, approximation, point sets, furthest neighbors, double normal. [Abstract] [bibtex-entry]



44. O. Migneco, M. Benoit, P.M. Koulibaly, I. Dygai, C. Bertogliati, P. Desvignes, Ph. Robert, G. Malandain, F. Bussière, and J. Darcourt. Perfusion brain SPECT and Statistical Parametric Mapping analysis indicate that apathy is a cingulate syndrome: a study in Alzheimer's disease and non-demented patients. NeuroImage, 13(5):896-902, 2001. Keyword(s): apathy, cingulate, statistical parametric mapping, ECD. [Abstract] [bibtex-entry]



45. Alexis Roche, Xavier Pennec, Grégoire Malandain, and Nicholas Ayache. Rigid Registration of 3D Ultrasound with MR Images: a New Approach Combining Intensity and Gradient Information. IEEE Transactions on Medical Imaging, 20(10):1038-1049, October 2001. Keyword(s): registration, ultrasound, magnetic resonance, correlation ratio, robust estimation, multimodal. [Abstract] [bibtex-entry]



46. L Soler, H Delingette, G Malandain, J Montagnat, N Ayache, C Koehl, O Dourthe, B Malassagne, M Smith, D Mutter, and J Marescaux. Fully automatic anatomical, pathological, and functional segmentation from CT scans for hepatic surgery. Comput Aided Surg, 6(3):131-42, 2001. Keyword(s): Human, Image Processing Computer-Assisted, methods, Liver, anatomy & histology, Support Non-U.S. Gov't, Surgery Computer-Assisted, Tomography X-Ray Computed. [Abstract] [bibtex-entry]



47. K. Krissian, G. Malandain, N. Ayache, R. Vaillant, and Y. Trousset. Model-Based Detection of Tubular Structures in 3D Images. Computer Vision and Image Understanding, 80(2):130-171, 2000. Keyword(s): filtering, vessel detection, multiscale analysis, segmentation. [Abstract] [bibtex-entry]



48. A. Roche, G. Malandain, and N. Ayache. Unifying Maximum Likelihood Approaches in Medical Image Registration. International Journal of Imaging Systems and Technology, 11(1):71-80, 2000. Note: Special Issue on 3D Imaging. Keyword(s): registration, matching, similarity measures. [bibtex-entry]



49. L Soler, H Delingette, G Malandain, N Ayache, C Koehl, J M Clement, O Dourthe, and J Marescaux. An automatic virtual patient reconstruction from CT-scans for hepatic surgical planning. Stud Health Technol Inform, 70:316-22, 2000. Keyword(s): Computer Graphics, Computer Simulation, Hepatectomy, Human, Image Processing Computer-Assisted, Liver Diseases, radiography, Tomography X-Ray Computed, User-Computer Interface. [Abstract] [bibtex-entry]



50. G. Malandain and S. Fernández-Vidal. Euclidean Skeletons. Image and Vision Computing, 16(5):317-327, April 1998. [bibtex-entry]



51. L. Robert and G. Malandain. Fast Binary Image Processing Using Binary Decision Diagrams. Computer Vision and Image Understanding, 72(1):1-9, October 1998. [bibtex-entry]



52. L. Soler, G. Malandain, and H. Delingette. Segmentation automatique : application aux angioscanners 3D du foie. Traitement du signal, 15(5):411-431, 1998. Keyword(s): journal, reconstruction. [bibtex-entry]



53. P Chauvel, W Sauerwein, N Bornfeld, W Friedrichs, N Brassart, A Courdi, J Herault, J P Pignol, P Y Bondiau, and G Malandain. Clinical and technical requirements for proton treatment planning of ocular diseases. The SERAG (South Europe Radiotherapy Group). Front Radiat Ther Oncol, 30:133-42, 1997. Keyword(s): Comparative Study, Conjunctival Neoplasms, diagnosis, Dose-Response Relationship Radiation, Follow-Up Studies, Fundus Oculi, Human, Image Processing Computer-Assisted, Magnetic Resonance Imaging, Melanoma, diagnosis, Neoplasm Recurrence Local, diagnosis, Predictive Value of Tests, Protons, therapeutic use, Radiotherapy Planning Computer-Assisted, methods, Retrospective Studies, Tomography X-Ray Computed, Treatment Outcome, Uveal Neoplasms, diagnosis. [bibtex-entry]



54. J. Feldmar, J. Declerck, G. Malandain, and N. Ayache. Extension of the ICP Algorithm to Non-Rigid Intensity-Based Registration of 3D Volumes. Computer Vision and Image Understanding, 66(2):193-206, May 1997. Keyword(s): registration, matching, deformations. [bibtex-entry]



55. L Picard, E Maurincomme, M Soderman, J Feldmar, R Anxionnat, L Launay, K Ericson, G Malandain, S Bracard, E Kerrien, O Flodmark, and N Ayache. X-ray angiography in stereotactic conditions: techniques and interest for interventional neuroradiology. Stereotact Funct Neurosurg, 68(1-4 Pt 1):117-20, 1997. Keyword(s): Angiography Digital Subtraction, methods, Carotid Arteries, anatomy & histology, Cerebral Angiography, methods, Human, Image Enhancement, Magnetic Resonance Angiography, methods, Radiology Interventional, methods, Stereotaxic Techniques. [Abstract] [bibtex-entry]



56. J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, Jr., R. M. Kessler, R. J. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes, P. Suetens, D. Vandermeulen, P. A. van den Elsen, S. Napel, T. S. Sumanaweera, B. Harkness, P. F. Hemler, D. L. G. Hill, D. J. Hawkes, C. Studholme, J. B. A. Maintz, M. A. Viergever, G. Malandain, X. Pennec, M. E. Noz, G. Q. Maguire, Jr., M. Pollack, C. A. Pelizzari, R. A. Robb, D. Hanson, and R. P. Woods. Comparison and evaluation of retrospective intermodality brain image registration techniques. Journal of Computer Assisted Tomography, 21(4):554-566, 1997. Keyword(s): registration, matching, multimodal, validation, uncertainty. [Abstract] [bibtex-entry]



57. G. Bertrand and G. Malandain. A note on ``Building skeleton models via 3D medial surface-axis thinning algorithms''. Graphical Models and Image Processing, 57(6):537-538, November 1995. [bibtex-entry]



58. G. Bertrand and G. Malandain. A new characterization of three-dimensional simple points. Pattern Recognition Letters, 15(2):169-175, February 1994. [bibtex-entry]



59. G. Malandain, S. Fernández-Vidal, and J.-M. Rocchisani. Mise en correspondance d'objets 3D par une approche mécanique : application aux images médicales multimodales. Traitement du signal, 11(6):541-558, 1994. [bibtex-entry]



60. G. Malandain, G. Bertrand, and N. Ayache. Topological segmentation of discrete surfaces. International Journal of Computer Vision, 10(2):183-197, 1993. [bibtex-entry]



61. O. Monga, R. Deriche, G. Malandain, and J.-P. Cocquerez. Recursive filtering and edge tracking: two primary tools for 3-D edge detection. Image and Vision Computing, 9(4):203-214, August 1991. [bibtex-entry]



62. J.-M Rocchisani, O. Monga, R. Deriche, and G. Malandain. Automatic multidimensional segmentation of nuclear medicine images using fast recursive filters. European Journal of Nuclear Medicine, 16:419, 1990. [bibtex-entry]

1. Vikash Gupta, Grégoire Malandain, Nicholas Ayache, and Xavier Pennec. A framework for creating population specific multimodal brain atlas using clinical T1 and diffusion tensor images. In MICCAI 2015 Workshop on Computational Diffusion MRI (CDMRI'15), Computational Diffusion MRI, Munich, Germany, pages 99-108, October 2015. Keyword(s): Multimodal brain atlas, Probabilistic white matter parcel-lation map, HIV, DTI-T1 brain template. [bibtex-entry]



2. Thomas Benseghir, Grégoire Malandain, and Régis Vaillant. Iterative Closest Curve: a Framework for Curvilinear Structure Registration Application to 2D/3D Coronary Arteries Registration. In Mori, Kensaku, Sakuma, Ichiro, Sato, Yoshinobu, Barillot, Christian, Navab, and Nassir, editors, MICCAI - Medical Image Computing and Computer Assisted Intervention, volume 8149 of Lecture Notes in Computer Science, Nagoya, Japan, pages 179-186, September 2013. Springer. Keyword(s): registration, curvilinear structure, ICP, chronic total occlusion, CTO, coronary, X-ray, computed tomography angiography, CTA. [bibtex-entry]



3. Marine Breuilly, Grégoire Malandain, Nicholas Ayache, Julien Guglielmi, Thierry Pourcher, Philippe R. Franken, and Jacques Darcourt. Image-based motion detection in 4D images and application to respiratory motion suppression. In ISBI - International Symposium on Biomedical Imaging, Proceedings of the 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, United States, pages 792-795, April 2013. IEEE. [bibtex-entry]



4. B. Gibaud, F. Ahmad, C. Barillot, F. Michel, B. Wali, B. Batrancourt, M. Dojat, P. Girard, A. Gaignard, D. Lingrand, J. Montagnat, J. Rojas Balderrama, G. Malandain, X. Pennec, D. Godard, G. Kassel, and M. Pélégrini-Issac. A federated system for sharing and reuse of images and image processing tools in neuroimaging. In Proc. of Computer Assisted Radiology and Surgery 2011 (CARS 2011), June 2011. [bibtex-entry]



5. Vincent Garcia, Olivier Commowick, and Grégoire Malandain. A Robust and Efficient Block Matching Framework for Non Linear Registration of Thoracic CT Images. In Grand Challenges in Medical Image Analysis (MICCAI workshop), Beijing, China, September 2010. [bibtex-entry]



6. Vincent Garcia, Tom Vercauteren, Grégoire Malandain, and Nicholas Ayache. Diffeomorphic demons and the EMPIRE10 challenge. In Grand Challenges in Medical Image Analysis (MICCAI workshop), Beijing, China, September 2010. [bibtex-entry]



7. Franck Michel, Alban Gaignard, Farooq Ahmad, Christian Barillot, Benedicte Batrancourt, Michel Dojat, Bernard Gibaud, Pascal Girard, David Godard, Gilles Kassel, Diane Lingrand, Grégoire Malandain, Johan Montagnat, Mélanie Pelegrini-Issac, Xavier Pennec, Javier Rojas Balderrama, and Bacem Wali. Grid-wide neuroimaging data federation in the context of the NeuroLOG project. In Proc. of HealthGrid Conference, volume 159 of Studies in Health Technology and Informatics, pages 112-123, 2010. [bibtex-entry]



8. Liliane Ramus, Olivier Commowick, and Grégoire Malandain. Construction of Patient Specific Atlases from Locally Most Similar Anatomical Pieces. In Tianzi Jiang, Nassir Navab, Josien P.W. Pluim, and Max A. Viergever, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), volume 6363 of Lecture Notes in Computer Science, Beijing, China, pages 155-162, September 2010. Springer. [bibtex-entry]



9. Liliane Ramus and Grégoire Malandain. Assessing Selection Methods in the Context of Multi-atlas Based Segmentation. In Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), Rotterdam, The Netherlands, April 2010. IEEE. [bibtex-entry]



10. Liliane Ramus and Grégoire Malandain. Multi-atlas based segmentation: Application to the head and neck region for radiotherapy planning. In MICCAI Workshop Medical Image Analysis for the Clinic - A Grand Challenge, Beijing, China, September 2010. [bibtex-entry]



11. Olivier Commowick, Simon K. Warfield, and Grégoire Malandain. Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas. In Guang-Zhong Yang, David Hawkes, Daniel Rueckert, Alison Noble, and Chris Taylor, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'09), Part II, volume 5762 of Lecture Notes in Computer Science, London, UK, pages 993-1000, September 2009. Springer. [bibtex-entry]



12. Liliane Ramus and Grégoire Malandain. Using consensus measures for atlas construction. In Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2009 (ISBI'09), Boston, MA, July 2009. [bibtex-entry]



13. Jean-Christophe Souplet, Christine Lebrun, Nicholas Ayache, and Grégoire Malandain. A New Evaluation Of The Brain Parenchymal Fraction: Application In Multiple Sclerosis Longitudinal Studies. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, pages 65-68, May 2008. IEEE. [bibtex-entry]



14. Jean-Christophe Souplet, Christine Lebrun, Nicholas Ayache, and Grégoire Malandain. An Automatic Segmentation of T2-FLAIR Multiple Sclerosis Lesions. In MICCAI-Multiple Sclerosis Lesion Segmentation Challenge Workshop, New York, NY, USA, September 2008. [bibtex-entry]



15. Olivier Commowick and Grégoire Malandain. Efficient Selection of the Most Similar Image in a Database for Critical Structures Segmentation. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), Part II, number 4792 of LNCS, Brisbane, Australia, pages 203-210, October 2007. [bibtex-entry]



16. Nicholas Ayache, Tom Vercauteren, Grégoire Malandain, Fabien Oberrietter, Nicolas Savoire, and Aymeric Perchant. Processing and Mosaicing of Fibered Confocal Images. In MICCAI Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'06), October 2006. Note: Invited. [bibtex-entry]



17. Olivier Commowick, Vincent Arsigny, Jimena Costa, Nicholas Ayache, and Grégoire Malandain. An Efficient Locally Affine Framework for the Registration of Anatomical Structures. In Proceedings of the Third IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 478-481, April 2006. Keyword(s): Non-rigid registration, Multi-affine registration, Magnetic Resonance Imaging, Polyaffine transformations, Log-Euclidean metrics, Diffeomorphisms. [bibtex-entry]



18. Olivier Commowick and Grégoire Malandain. Evaluation of Atlas Construction Strategies in the Context of Radiotherapy Planning. In Proceedings of the SA2PM Workshop (From Statistical Atlases to Personalized Models), Copenhagen, October 2006. Note: Held in conjunction with MICCAI 2006. Keyword(s): Non-rigid registration, Atlas, Head And Neck. [bibtex-entry]



19. Eric Bardinet, Didier Dormont, Grégoire Malandain, Manik Bhattacharjee, Bernard Pidoux, Christian Saleh, Philippe Cornu, Nicholas Ayache, Yves Agid, and Jérôme Yelnik. Retrospective cross-evaluation of an histological and deformable 3D atlas of the basal ganglia on series of Parkinsonian patients treated by deep brain stimulation (DBS). In J. Duncan and G. Gerig, editors, Proceedings of MICCAI'05, volume 3750 of LNCS, Palm Springs, California, pages 385-393, 2005. Springer. [bibtex-entry]



20. Arnaud Charnoz, Vincent Agnus, Grégoire Malandain, Clément Forest, Mohamed Tajine, and Luc Soler. Liver registration for the follow-up of hepatic tumors. In J. Duncan and G. Gerig, editors, Proceedings of MICCAI'05, volume 3750 of LNCS, Palm Springs, California, pages 155-162, 2005. Springer. [bibtex-entry]



21. Arnaud Charnoz, Vincent Agnus, Grégoire Malandain, Luc Soler, and Mohamed Tajine. Tree Matching Applied to Vascular System. In Luc Brun and Mario Vento, editors, Graph-Based Representations in Pattern Recognition, volume 3434 of LNCS, pages 183-192, 2005. Springer. [bibtex-entry]



22. Arnaud Charnoz, Vincent Agnus, Grégoire Malandain, Luc Soler, and Mohamed Tajine. Vascular system matching validated on the liver. In Gary Christensen and Milan Sonka, editors, Proc. of Information Processing in Medical Imaging 2005 (IPMI'05), volume 3565 of LNCS, Glenwood springs, Colorado, USA, pages 443-455, July 2005. Springer. [bibtex-entry]



23. Olivier Commowick, Radu Stefanescu, Pierre Fillard, Vincent Arsigny, Nicholas Ayache, Xavier Pennec, and Grégoire Malandain. Incorporating Statistical Measures of Anatomical Variability in Atlas-to-Subject Registration for Conformal Brain Radiotherapy. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part II, volume 3750 of LNCS, Palm Springs, CA, USA, October 26-29, pages 927-934, 2005. Springer. Keyword(s): registration, brain, Brain Stem, statistics, validation, Tensors. [Annotation] [bibtex-entry]



24. Heike Hufnagel, Xavier Pennec, Grégoire Malandain, Hans Handels, and Nicholas Ayache. Non-Linear 2D and 3D Registration Using Block-Matching and B-Splines. In Bildverarbeitung fuer die Medizin 2005, Informatik aktuell, Heidelberg, Germany, pages 325-329, March 2005. Deutsches Krebsforschungszentrum, Springer. [bibtex-entry]



25. Mauricio Reyes, Grégoire Malandain, Jacques Darcourt, and Pierre Malick Koulibaly. Respiratory Motion Correction in Emission Tomography Imaging. In Fully Three-Dimensional Image Reconstruction Meeting in Radiology and Nuclear Medicine, Salt Lake City, Utah, USA, July 2005. [bibtex-entry]



26. Mauricio Reyes, Grégoire Malandain, Pierre Malick Koulibaly, Miguel A. González Ballester, and Jacques Darcourt. Respiratory Motion Correction in Emission Tomography Image Reconstruction. In J. Duncan and G. Gerig, editors, Proceedings of MICCAI'05, Part II, volume 3750 of LNCS, Palm Springs, California, pages 369-376, 2005. Springer. [bibtex-entry]



27. Olivier Clatz, Pierre Yves Bondiau, Hervé Delingette, Grégoire Malandain, Maxime Sermesant, Simon Warfield, and Nicholas Ayache. In Silico Tumor Growth: Application to Glioblastomas. In C. Barillot, D.R. Haynor, and P. Hellier, editors, Proc. of the 7th Int. Conf on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004 (2), volume 3217 of LNCS, Saint-Malo, France, pages 337-345, September 2004. Springer. [bibtex-entry]



28. Guillaume Dugas-Phocion, Miguel Ángel González Ballester, Christine Lebrun, Stéphane Chanalet, Caroline Bensa, Grégoire Malandain, and Nicholas Ayache. Hierarchical Segmentation of Multiple Sclerosis Lesions in Multi-Sequence MRI. In International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'04), Arlington, VA, USA, April 2004. IEEE. Keyword(s): multiple sclerosis. [bibtex-entry]



29. Guillaume Dugas-Phocion, Miguel Ángel González Ballester, Grégoire Malandain, Christine Lebrun, and Nicholas Ayache. Improved EM-Based Tissue Segmentation and Partial Volume Effect Quantification in Multi-Sequence Brain MRI. In Proc. of MICCAI'04, volume 3216 of Lecture Notes in Computer Science, Saint-Malo, France, pages 26-33, September 2004. Springer. Keyword(s): multiple sclerosis. [bibtex-entry]



30. Céline Fouard, Grégoire Malandain, Stefen Prohaska, Malte Westerhoff, Francis Cassot, Christophe Mazel, Didier Asselot, and Jean-Pierre Marc-Vergnes. Skeletonization by blocks for large datasets: application to brain microcirculation. In International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'04), Arlington, VA, USA, April 2004. IEEE. [bibtex-entry]



31. Céline Fouard, Grégoire Malandain, Stefen Prohaska, Malte Westerhoff, Francis Cassot, Christophe Mazel, Didier Asselot, and Jean-Pierre Marc-Vergnes. Squelettisation par blocs pour des grands volumes de données 3D: application à la microcirculation cérébrale. In Proc. of RFIA'04, Toulouse, France, 2004. Keyword(s): skeletonisation, large datasets. [bibtex-entry]



32. Nicolas Savoire, Georges Le Goualher, Aymeric Perchant, François Lacombe, Grégoire Malandain, and Nicholas Ayache. Measuring Blood Cells Velocity In Microvessels From a Single Image: Application To In Vivo and In Situ Confocal Microscopy. In Proc. ISBI'04, Arlington (USA), pages 456-459, April 2004. Keyword(s): RBC velocity, confocal microscopy. [bibtex-entry]



33. Radu Stefanescu, Olivier Commowick, Grégoire Malandain, Pierre-Yves Bondiau, Nicholas Ayache, and Xavier Pennec. Non-Rigid Atlas to Subject Registration with Pathologies for Conformal Brain Radiotherapy. In C. Barillot, D.R. Haynor, and P. Hellier, editors, Proc. of the 7th Int. Conf on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004, volume 3216 of LNCS, Saint-Malo, France, pages 704-711, September 2004. Springer. Keyword(s): registration, non-rigid, conformal radiotherapy, atlas, pathology. [bibtex-entry]



34. Jonathan Stoeckel, Nicholas Ayache, Grégoire Malandain, Pierre M. Koulibaly, Klaus P. Ebmeier, and Jacques Darcourt. Automatic Classification of SPECT Images of Alzheimer's Disease Patients and Control Subjects. In Christian Barillot, David Haynor, and Pierre Hellier, editors, Proc. of MICCAI'04, volume 3217 of LNCS, Saint-Malo, France, pages 654-662, September 2004. Springer. [bibtex-entry]



35. C. Blondel, G. Malandain, R. Vaillant, and N. Ayache. 4D deformation field of coronary arteries from monoplane rotational X-ray angiography. In Computer Assisted Radiology and Surgery 2003 Proceedings, volume 1256 of ICS, Londres, United Kingdom, June 2003. Elsevier. [bibtex-entry]



36. C. Blondel, G. Malandain, R. Vaillant, F. Devernay, È. Coste-Manière, and N. Ayache. 4D Tomographic Representation of Coronary Arteries From One Rotational X-ray Sequence. In Randy E. Ellis and Terry M. Peters, editors, Medical image computing and computer-assisted intervention (MICCAI 2003), volume 2878 of LNCS, Montreal, Canada, pages 416-423, November 2003. Springer. [Abstract] [bibtex-entry]



37. C. Blondel, R. Vaillant, G. Malandain, and N. Ayache. 3D tomographic reconstruction of coronary arteries using a precomputed 4D motion field. In Yves Bizais, editor, Proceedings of the VIIth International Conference on Fully 3D Reconstruction In Radiology and Nuclear Medicine, Saint-Malo, France, July 2003. [bibtex-entry]



38. Céline Fouard and Grégoire Malandain. Systematized calculation of optimal coefficients of 3-D chamfer norms. In Ingela Nyström, Gabriella Sanniti di Baja, and Stina Svensson, editors, Proc. of DGCI'03, number 2886 of LNCS, Napoly, Italy, pages 214-223, November 2003. Springer. Keyword(s): chamfer mask, norm constraints anysotropic grid. [bibtex-entry]



39. C. Kenwright, E. Bardinet, S.A. Hojjat, G. Malandain, N. Ayache, and A.C.F. Colchester. 2D to 3D Refinement of Post Mortem Optical and MRI Co-Registration. In Randy E. Ellis and Terry M. Peters, editors, Medical image computing and computer-assisted intervention (MICCAI 2003), volume 2879 of LNCS, Montreal, Canada, pages 935-944, November 2003. Springer. [bibtex-entry]



40. G. Malandain and E. Bardinet. Fusion of autoradiographies with an MR volume using 2-D and 3-D linear transformations. In Chris Taylor and Alison Noble, editors, Proceedings of Information Processing in Medical Imaging (IPMI'03), volume 2732 of LNCS, pages 487-498, 2003. Springer. Keyword(s): autoradiography, histology, MRI, matching, fusion. [bibtex-entry]



41. Grégoire Malandain and Eric Bardinet. Intensity compensation within series of images. In Randy E. Ellis and Terry M. Peters, editors, Medical image computing and computer-assisted intervention (MICCAI 2003), volume 2879 of LNCS, Montreal, Canada, pages 41-49, November 2003. Springer. [Abstract] [bibtex-entry]



42. A. Pitiot, G. Malandain, E. Bardinet, and P. M. Thompson. Piecewise Affine Registration of Biological Images. In J.C. Gee, J.B. A. Maintz, and M. W. Vannier, editors, Second International Workshop on Biomedical Image Registration WBIR'03, volume 2717 of Lecture Notes in Computer Science, Philadelphia, PA, USA, pages 91-101, 2003. Springer. Note: Also research report INRIA RR-4866. Keyword(s): registration, histology. [bibtex-entry]



43. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Chantal François, Dominique Tandé, Karine Parain, Grégoire Malandain, Nicholas Ayache, Etienne Hirsch, and Yves Agid. Delineation of the basal ganglia in MR images of patients by automatic registration of a multimodal atlas based on histological and MR data. In NeuroImage (HBM'03), New York, USA, 2003. Keyword(s): fMRI. [bibtex-entry]



44. Eric Bardinet, Sébastien Ourselin, Didier Dormont, Grégoire Malandain, Dominique Tandé, Karine Parain, Nicholas Ayache, and Jérôme Yelnik. Co-registration of histological, optical and MR data of the human brain. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 548-555, September 2002. Springer. Keyword(s): registration, human brain atlas, histology, MRI. [bibtex-entry]



45. Eric Bardinet, Sébastien Ourselin, Grégoire Malandain, Dominique Tandé, Karine Parain, Nicholas Ayache, and Jérôme Yelnik. Three dimensional functional cartography of the human basal ganglia by registration of optical and histological serial sections. In IEEE International Symposium on Biomedical Imaging, Washington, USA, pages 329-332, 2002. Keyword(s): registration, human brain atlas, histology, MRI. [bibtex-entry]



46. Christophe Blondel, Régis Vaillant, Frédéric Devernay, Grégoire Malandain, and Nicholas Ayache. Automatic trinocular 3D reconstruction of coronary artery centerlines from rotational X-ray angiography. In Computer Assisted Radiology and Surgery 2002 Proceedings, Paris, pages 1073-1078, June 2002. Springer. Note: International Symposium on Cardiovascular Imaging - Invasive Coronary and Vascular Imaging. [bibtex-entry]



47. Jean-Daniel Boissonnat, Raphaelle Chaine, P. Frey, G. Malandain, F. Nicoud, S. Salmon, E. Saltel, and M. Thiriet. From medical images to computational meshes. In Marc Thiriet, editor, Conference on Modelling and Simulation for Computer-aided Medicine and Surgery (MS4CMS'02), volume 12 of ESAIM: PROC, pages 1-7, 2002. European Series in Applied and Industrial Mathematics. [bibtex-entry]



48. Guillaume Flandin, Ferath Kherif, Xavier Pennec, Grégoire Malandain, Nicholas Ayache, and Jean-Baptiste Poline. Improved Detection Sensitivity in Functional MRI Data using a Brain Parcelling Technique. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 467-474, September 2002. Springer. Keyword(s): fMRI. [bibtex-entry]



49. Grégoire Malandain and Jean-Daniel Boissonnat. Computing the Diameter of a Point Set. In A. Braquelaire, J.-O. Lachaud, and A. Vialard, editors, Discrete Geometry for Computer Imagery (DGCI 2002), volume 2301 of LNCS, Bordeaux, France, 2002. Springer. Note: Also INRIA research report RR-4233. Keyword(s): computational geometry, diameter, width, approximation, point sets, furthest neighbors, double normal. [bibtex-entry]



50. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Chantal François, Dominique Tandé, Karine Parain, Sébastien Ourselin, Grégoire Malandain, Nicholas Ayache, and Etienne Hirsch. Elaboration of a three-dimensional, functional and registrable atlas of the human basal ganglia. In 3rd Forum of European Neuroscience, Paris, July 2002. The Federation of European Neuroscience Societies (FENS). Keyword(s): registration, human brain atlas, histology, MRI. [bibtex-entry]



51. P. Hellier, C. Barillot, I. Corouge, B. Giraud, G. Le Goualher, L. Collins, A. Evans, G. Malandain, and N. Ayache. Retrospective Evaluation of Inter-subject Brain registration. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 258-265, October 2001. Keyword(s): registration, matching. [bibtex-entry]



52. O. Migneco, G. Malandain, P.M. Koulibaly, Ph. Robert, N. Ayache, and J. Darcourt. Evaluation of an automatic classifier for SPECT Alzheimer's disease diagnosis. In European Association of Nuclear Medicine Meeting, Napoli, Italy, 2001. Note: European Journal of Nuclear Medecine 28(8):1056. [bibtex-entry]



53. F. Mourgues, F. Devernay, G. Malandain, and E. Coste-Manière. 3D+t Modeling of Coronary Artery Tree from Standard Non Simultaneous Angiograms. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 1320-1322, October 2001. [bibtex-entry]



54. S. Ourselin, E. Bardinet, D. Dormont, G. Malandain, A. Roche, N. Ayache, D. Tandé, K. Parain, and J. Yelnik. Fusion of histological sections and MR images: towards the construction of an atlas of the human basal ganglia. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 743-751, October 2001. Keyword(s): registration, matching, human brain atlas, histology, MRI. [bibtex-entry]



55. David Rey, Jonathan Stoeckel, Grégoire Malandain, and Nicholas Ayache. A Spatio-temporal Model-based Statistical Approach to Detect Evolving Multiple Sclerosis Lesions. In IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, MMBIA'01, Kauia, Hawai, USA, December 2001. Keyword(s): multiple sclerosis. [bibtex-entry]



56. D. Rey, J. Stoeckel, G. Malandain, and N. Ayache. Using SPM to Detect Evolving MS Lesions. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 1232-1234, October 2001. Springer. Keyword(s): multiple sclerosis. [bibtex-entry]



57. J. Stoeckel, G. Malandain, O. Migneco, P.M. Koulibaly, P. Robert, N. Ayache, and J. Darcourt. Classification of SPECT Images of Normal Subjects versus Images of Alzheimer's Disease Patients. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 666-674, October 2001. [bibtex-entry]



58. J. Stoeckel, J.-B. Poline, G. Malandain, N. Ayache, and J. Darcourt. Smoothness and degrees of freedom restrictions when using SPM 99. In Human Brain Mapping HBM'01, Brighton, UK, June 2001. Note: In NeuroImage 13(6 supplement 1):259. [bibtex-entry]



59. E. Bardinet, S. Fernández-Vidal, S. Damas, G. Malandain, and N. Perez de la Blanca Capilla. Structural Object Matching. In Advanced Concepts for Intelligent Vision Systems (ACIVS 2000), Baden-Baden, Allemagne, August 2000. [bibtex-entry]



60. I. Dygai, J. Stoeckel, O. Migneco, Ph. Desvignes, G. Malandain, N. Ayache, M. Chatel, F. Fauchon, M. Frenay, J. Darcourt, and F. Bussière. SPM Analysis Applied to MIBI-SPECT for the Diagnosis of Recurrent Oligodendrogliomas. In European Association of Nuclear Medicine Meeting, Paris, France, August 2000. Note: European Journal of Nuclear Medecine 27(8):1144. [bibtex-entry]



61. S. Fernández-Vidal, E. Bardinet, G. Malandain, S. Damas, and N.P. de la Blanca Capilla. Object Representation and Comparison Inferred from Its Medial Axis. In International Conference on Pattern Recognition (ICPR 2000), volume 1, Barcelone, Espagne, pages 1712-1715, septembre 2000. Keyword(s): euclidean skeleton, medial axis transform, topological characterisation, shape analysis, object representation, object comparison, ARG, graph matching. [Abstract] [bibtex-entry]



62. O. Migneco, G. Malandain, A. Roche, I. Dygai, F. Bussière, N. Ayache, and J. Darcourt. Absolute calibration of HMPAO SPECT using Xenon-133. In European Association of Nuclear Medicine Meeting, Paris, France, August 2000. Note: European Journal of Nuclear Medecine 27(8):967. [bibtex-entry]



63. A. Roche, X. Pennec, M. Rudolph, D. P. Auer, G. Malandain, S. Ourselin, L. M. Auer, and N. Ayache. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. In A.M. DiGioia and S. Delp, editors, Proc. of the 3rd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'00), volume 1935 of LNCS, Pittsburgh, Pennsylvanie, USA, pages 567-577, October 11-14 2000. Note: Published in IEEE TMI 20(10), oct. 2001, p. 25-31. Keyword(s): registration, matching, multimodal, magnetic resonance, ultrasound, correlation ratio. [bibtex-entry]



64. L. Soler, J.-M. Clément, C. Koehl, H. Delingette, G. Malandain, N. Ayache, O. Dourthe, and J. Marescaux. An Automatic Virtual Patient Reconstruction from CT-Scans for Hepatic Surgical Planning. In Medicine Meets Virtual Reality (MMVR'2000), Studies in Health Technology and Informatic, Los Angeles, January 2000. IOS press. Keyword(s): conference, reconstruction. [bibtex-entry]



65. L. Soler, H. Delingette, G. Malandain, J. Montagnat, N. Ayache, J.-M. Clément, C. Koehl, O. Dourthe, D. Mutter, and J. Marescaux. A Fully Automatic Anatomical, Pathological and Fonctionnal Segmentation from CT-scans for Hepatic Surgery. In Medical Imaging 2000, SPIE proceedings, San Diego, pages 246-255, February 2000. SPIE. Keyword(s): conference, reconstruction. [bibtex-entry]



66. L. Soler, O. Dourthe, G. Malandain, J. Montagnat, H. Delingette, and N. Ayache. A new 3D segmentation of liver neoplasm, portal venous system and parenchymal contours. In European Congress of Radiology, Vienne (Autriche), mars 2000. [bibtex-entry]



67. L. Soler, C. Koehl, H. Delingette, G. Malandain, N. Ayache, D. Mutter, J. Leroy, B. Malassagne, and J. Marescaux. Planification Chirurgicale Hépatique Assistée par Ordinateur. In 11ème Journées de printemps de l'ACHBT, Paris (France), Juin 2000. [bibtex-entry]



68. P.Y. Bondiau, G. Malandain, K. Benezery, A. Roche, R. Ferrand, D. Pontvert, J.L. Habrand, and J.N. Bruneton. Fusion Scanner / IRM entièrement automatique : perspective d'utilisation pour la radiothérapie. In Proc. du XIX Forum de Cancérologie, Paris, 31 mai- 2 juin 1999. [bibtex-entry]



69. J. Montagnat, H. Delingette, and G. Malandain. Cylindrical Echocardiographic Images Segmentation based on 3D Deformable Models. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'99), volume 1679 of Lectures Notes in Computer Science, Cambridge, UK, pages 168-175, September 1999. Springer. Keyword(s): conference, reconstruction. [bibtex-entry]



70. A. Roche, G. Malandain, N. Ayache, and S. Prima. Towards a Better Comprehension of Similarity Measures used in Medical Image Registration. In C. Taylor and A. Colchester, editors, Proc. of 2nd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'99), volume 1679 of LNCS, Cambridge, UK, pages 555-566, September 1999. Springer. [bibtex-entry]



71. L. Soler, J.-M. Clément, C. Koehl, H. Delingette, G. Malandain, N. Ayache, O. Dourthe, D. Mutter, and J. Marescaux. Planification Chirurgicale Hépatique Assistée par Ordinateur. In Journées de la société française de Chirurgie Digestive, Paris, December 1999. [bibtex-entry]



72. K. Krissian, G. Malandain, N. Ayache, R. Vaillant, and Y. Trousset. Model-Based Multiscale Detection of 3D Vessels. In Proc. of the IEEE Conf. on Computer Vision and Pattern Recognition, CVPR'98, Santa Barbara, pages 722-727, 1998. [bibtex-entry]



73. K. Krissian, G. Malandain, N. Ayache, R. Vaillant, and Y. Trousset. Model-Based Multiscale Detection of 3D Vessels. In B. Vemuri, editor, Proc. of Worshop on Biomedical Image Analysis WBIA'98, Santa Barbara, pages 202-208, 1998. [bibtex-entry]



74. Alexis Roche, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. The Correlation Ratio as a New Similarity Measure for Multimodal Image Registration. In Proc. of First Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'98), volume 1496 of LNCS, Cambridge, USA, pages 1115-1124, October 1998. Springer. Keyword(s): registration, matching, multimodal, correlation ratio. [bibtex-entry]



75. M. Thiriet and G. Malandain. Modélisation numérique de l'écoulement dans les anévrismes cérébraux. In XXIIIème congrès de la société de Biomécanique, Lyon, France, 17-18 septembre 1998. [bibtex-entry]



76. M. Thiriet, S. Piperno, G. Malandain, P. Frey, J. Bittoun, and A. Gaston. Computational models of flow in cerebral aneurisms. In $11^{\rm th}$ Conference of the European Society of Biomechanics, Toulouse, France, pages 20, 8-11 juillet 1998. [bibtex-entry]



77. P.-Y. Bondiau and G. Malandain. Eye Reconstruction and CT-Retinography Fusion for Proton Treatment Planning of Ocular Diseases. In CVRMed-MRCAS'97, volume 1205 of LNCS, Grenoble, France, pages 705-714, March 1997. Springer. [bibtex-entry]



78. P.-Y. Bondiau, G. Malandain, N. Ayache, C. Zur, P. Chauvel, and P. Gastaud. L'oeil virtuel. In 103ème Congrès de la société française d'ophtalmologie, Paris, France, May 1997. [bibtex-entry]



79. P.-Y. Bondiau, G. Malandain, P. Chauvel, F. Peyrade, and J.N. Bruneton. Automatic eye reconstruction for radiotherapy. In 1st Joint Annual Conference of the International Society for Computer Aided Surgery, Berlin, Germany, June 1997. [bibtex-entry]



80. J. Feldmar, G. Malandain, N. Ayache, S. Fernández-Vidal, E. Maurincomme, and Y. Trousset. Matching 3D MR Angiography Data and 2D X-ray Angiograms. In CVRMed-MRCAS'97, volume 1205 of LNCS, Grenoble, France, pages 129-138, March 1997. Springer. [bibtex-entry]



81. K. Krissian, G. Malandain, and N. Ayache. Directional Anisotropic Diffusion Applied to Segmentation of Vessels in 3D Images. In Scale-Space Theory in Computer Vision (Scale-Space'97), volume 1252 of LNCS, Utrecht, The Netherlands, pages 345-348, July 1997. Springer. [bibtex-entry]



82. O. Migneco, M. Benoit, G. Malandain, J.-P. Thirion, Ph. Robert, N. Ayache, F. Bussière, and J. Darcourt. SPECT memory activation thanks to non-rigid coregistration. In European Association of Nuclear Medecine Meeting, Glasgow, Scotland, August 1997. [bibtex-entry]



83. O. Migneco, J. Darcourt, M. Benoit, G. Malandain, J.-P. Thirion, Ph. Robert, R. Vidal, Ph. Desvignes, J. Benoliel, N. Ayache, and F. Bussière. Activation mnésique en TEMP. In 36eme Colloque de médecine nucléaire 1997, Rennes, France, October 1997. [bibtex-entry]



84. O. Migneco, J.-P. Thirion, M. Benoit, G. Malandain, P. Robert, N. Ayache, and J. Darcourt. SPECT memory activation studies thanks to non-rigid automated 3D image registration. In CVRMed-MRCAS'97, volume 1205 of LNCS, Grenoble, France, pages 487-490, March 1997. Springer. [bibtex-entry]



85. L. Robert and G. Malandain. Fast Binary Image Processing Using Binary Decision Diagrams. In Computer Vision and Pattern Recognition, Puerto Rico, pages 97-102, June 1997. IEEE. [bibtex-entry]



86. L. Soler, G. Malandain, and H. Delingette. Segmentation automatique : application aux angioscanners 3D du foie. In Proceedings of Sixth Orasis conference (ORASIS'97), La Colle-sur-Loup, France, 1997. Keyword(s): workshop, reconstruction. [bibtex-entry]



87. L. Soler, G. Malandain, J. Montagnat, H. Delingette, N. Ayache, J.M. Clément, C. Roy, Y. Russier, V. Tassetti, and J. Marescaux. Automatic Segmentation of Portal Vein in CT-Scans of the Liver. In Proceedings of World Congress on Medical Physics and Biomedical Engineering, number 2, Nice, France, pages 788, 1997. Keyword(s): workshop, reconstruction. [bibtex-entry]



88. P.-Y. Bondiau, G. Malandain, and P. Chauvel. Projet de reconstruction tridimensionnelle de l'oeil à partir des images scanneurs, IRM et de fundographie. Utilisation pour la protonthérapie des tumeurs oculaires. In 35eme Congrès de la société française des physiciens d'hôpital, Toulouse, France, 6-8 juin 1996. [bibtex-entry]



89. P. Chauvel, W. Sauerwein, N. Bornfeld, W. Friedrichs, N. Brassart, A. Courdi, J. Hérault, J.-P. Pignol, P.-Y. Bondiau, and G. Malandain. Clinical and Technical Requirements for Proton Treatment Planning of Ocular Diseases. In First International Symposium on Special Aspects of Radiotherapy, Berlin (Germany), May 3--6 1996. [bibtex-entry]



90. J. Feldmar, G. Malandain, J. Declerck, and N. Ayache. Extension of the ICP Algorithm to Non-Rigid Intensity-Based Registration of 3D Volumes. In Mathematical Methods in Biomedical Image Analysis, San Francisco, California, USA, June 21-22 1996. Keyword(s): registration, matching, deformations. [bibtex-entry]



91. S. Fernández-Vidal and G. Malandain. Squelettes euclidiens d'objets $n$-dimensionnels. In 10ème Congrès Reconnaissance des Formes et Intelligence Artificielle (RFIA'96), Rennes, France, 16-18 janvier 1996. AFCET - AFIA. [bibtex-entry]



92. O. Migneco, J.-P. Thirion, M. Benoit, G. Malandain, P. Robert, N. Ayache, and J. Darcourt. Une étude TEMP d'activation mnésique réalisée grâce à des recalages d'images 3D. In Actes du congrès sur la Méthodologie en imagerie fonctionnelle cérébrale, Lyon, France, December 1996. [bibtex-entry]



93. J. West, J.M. Fitzpatrick, M.Y. Wang, B.M. Dawant, C.R. Maurer, Jr., R.M. Kessler, R.J. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes, P. Suetens, D. Vandermeulen, P.A. van den Elsen, P.F. Hemler, S. Napel, T.S. Sumanaweera, B. Harkness, D.L.G. Hill, C. Studholme, G. Malandain, X. Pennec, M.E. Noz, G.Q. Maguire, Jr., M. Pollack, C.A. Pelizzari, R.A. Robb, D. Hanson, and R.P. Woods. Comparison and evaluation of retrospective intermodality image registration techniques. In Medical Imaging 1996: Image Processing, volume 2710 of SPIE proceedings series, Newport Beach, California, USA, February 10-15 1996. Keyword(s): registration, matching, multimodal, validation. [bibtex-entry]



94. N. Ayache, J. Feldmar, G. Malandain, E. Maurincomme, C. Picard, and Y. Trousset. Recalage sans cadre stéréotaxique d'images volumiques et projectives en radiologie interventionnelle. In Mini colloque INSERM de radiologie interventionnelle, Paris, June 1995. [bibtex-entry]



95. S. Fernández-Vidal and G. Malandain. Digital Euclidean skeleton in n-D. In 9th Scandinavian Conference on Image Analysis (SCIA'95), Uppsala, Sweden, pages 517-524, June 1995. IAPR. [bibtex-entry]



96. M.L. Goris, G. Malandain, and I. Marque. Automatic registration of Myocardial Perfusion study using a Potential Based Rigid Transformation. In 2nd International Conference of Nuclear Cardiology, Cannes France, April 1995. Note: Also in Journal of Nuclear Cardiology 1995; 2: S82. [bibtex-entry]



97. G. Malandain and S. Fernández-Vidal. Topologically correct skeleton in $n-D$. In 5th Discrete Geometry for Computer Imagery (DGCI'95), Clermont-Ferrand, France, pages 199-208, September 1995. [bibtex-entry]



98. G. Malandain, S. Fernández-Vidal, and J.-M. Rocchisani. Improving Registration of 3-D Medical Images Using a Mechanical Based Method. In 3rd European Conference on Computer Vision (ECCV'94), volume 801 of LNCS, Stockholm, Sweden, pages 131-136, May 2--6 1994. Springer. [bibtex-entry]



99. G. Malandain, S. Fernández-Vidal, and J.-M. Rocchisani. Rigid Registration of 3-D Objects by Motion Analysis. In 12th International Conference on Pattern Recognition (ICPR'94), Jérusalem, Israël, pages 579-581, October 9--13 1994. IAPR. [bibtex-entry]



100. G. Bertrand and G. Malandain. A new topological segmentation of discrete surfaces. In 2nd European Conference on Computer Vision (ECCV 92), pages 710-71, May 18--23 1992. Note: Santa Margherita, Ligure, Italy. [bibtex-entry]



101. G. Malandain and G. Bertrand. Fast characterization of 3D simple points. In IAPR 11th International Conference on Pattern Recognition, The Hague, The Netherlands, August 30 -- September 3 1992. [bibtex-entry]



102. G. Malandain and J.-M. Rocchisani. 3D superimposition of CT and SPECT images of the brain by a mechanical based method. In European Association of Nuclear Medicine Congress, Lisbon, Portugal, August 1992. Note: Also in European Journal of Nuclear Medicine 19(8):624. [bibtex-entry]



103. G. Malandain and J.-M. Rocchisani. Registration of 3D medical images using a mechanical based method. In IEEE EMBS satellite symposium on 3D advanced image processing in medicine, Rennes, France, November 2--4 1992. [bibtex-entry]



104. G. Malandain, G. Bertrand, and N. Ayache. Topological classification in digital space. In A.C.F. Colchester and D.J. Hawkes, editors, XIIth international conference on Information Processing in Medical Imaging (IPMI), volume 511 of LNCS, Wye, Kent, England, pages 300-313, July 1991. Springer. [bibtex-entry]



105. G. Malandain, G. Bertrand, and N. Ayache. Topological segmentation of discrete surfaces. In Proceedings of the conference on Computer Vision and Pattern Recognition, Lahaina, Maui, Hawaii, pages 444-449, June 3--6 1991. IEEE. [bibtex-entry]



106. O. Monga, R. Deriche, G. Malandain, and J.P. Cocquerez. 3-D edge detection by recursive filtering and edge tracking. In 10th International Conference on Pattern Recognition, Atlantic City, USA, June 17--21 1990. [bibtex-entry]



107. O. Monga, R. Deriche, G. Malandain, and J.P. Cocquerez. Recursive filtering and edge closing: two primary tools for 3-D edge detection. In 1st European Conference on Computer Vision (ECCV'90), volume 427 of Lecture Notes in Computer Science, Nice, France, April 1990. Springer. [bibtex-entry]

1. Marine Breuilly, Kaouthar Chatti, Jacques Darcourt, Philippe Franken, Julien Guglielmi, Grégoire Malandain, and Thierry Pourcher. From extraction of physiological features with dynamic $\mu$-SPECT imaging to modelling of iodide biodistribution in stomach. Research Report, Inria Sophia Antipolis, August 2015. [bibtex-entry]



2. Céline Fouard, Grégoire Malandain, Steffen Prohaska, and Malte Westerhoff. Blockwise processing applied to brain micro-vascular network study. Research report RR-5581, INRIA, 2005. Keyword(s): image mosaic, digital topology, chamfer map, medial axis, skeleton, topological thinning. [Abstract] [bibtex-entry]



3. Grégoire Malandain and Céline Fouard. On optimal chamfer masks and coefficients. Research report RR-5566, INRIA, 2005. Keyword(s): Chamfer distance, anisotropic lattice, Farey triangulation. [Abstract] [bibtex-entry]



4. Christophe Blondel, Grégoire Malandain, Régis Vaillant, and Nicholas Ayache. Reconstruction of Coronary Arteries from One Rotational X-Ray Projection Sequence. Research report RR-5214, INRIA, May 2004. Keyword(s): Coronary angiography, Stereovision, Motion Analysis, Tomography. [bibtex-entry]



5. Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, Maxime Sermesant, Simon Warfield, Grégoire Malandain, and Nicholas Ayache. Brain Tumor Growth Simulation. Research report RR-5187, INRIA, 2004. Keyword(s): tumor, model, glioblastoma, brain, Magnetic Resonance Imaging, growth, model, simulation, finite element, biomechanics, diffusion, infiltration, mass effect, Clinical Target Volume, Gross Tumor Volume. [bibtex-entry]



6. Mauricio Reyes Aguirre, Grégoire Malandain, and Jacques Darcourt. Respiratory Movement Correction in Emission Tomography. Research report RR-5279, INRIA, July 2004. Keyword(s): image reconstruction, respiratory movement, MLEM, nuclear medicine, emission tomography. [bibtex-entry]



7. E. Bardinet and G. Malandain. Fusion of autoradiographies with an MR volume using 2-D and 3-D linear transformations. Research report RR-4791, INRIA, 2003. Keyword(s): autoradiography, histology, MRI, matching, fusion. [bibtex-entry]



8. Céline Fouard and Grégoire Malandain. Automatic calculation of chamfer mask coefficients for large masks and anisotropic images. Research report RR-4792, INRIA, 2003. Keyword(s): image analysis, chamfer distance, norm constraint, anisotropic lattice, Farey triangulation. [Abstract] [bibtex-entry]



9. Alain Pitiot, Eric Bardinet, P. M. Thompson, and G. Malandain. Automated Piecewise Affine Registration of Biological Images. Research report RR-4866, INRIA, July 2003. Keyword(s): registration, matching, clustering, histology, MRI. [Abstract] [bibtex-entry]



10. P. Kornprobst, R. Peeters, T. Vieville, G. Malandain, S. Mierisova, S. Sunaert, O. Faugeras, and P. Van Hecke. Superresolution in MRI and its influence in statistical analysis. Research report RR-4513, INRIA, July 2002. Keyword(s): Superresolution, MRI, anisotropic diffusion, half-quadratic minimization. [bibtex-entry]



11. Grégoire Malandain and Jean-Daniel Boissonnat. Computing the Diameter of a Point Set. Research report RR-4233, INRIA, Sophia-Antipolis, July 2001. Keyword(s): computational geometry. [bibtex-entry]



12. Sébastien Ourselin, Xavier Pennec, Radu Stefanescu, Grégoire Malandain, and Nicholas Ayache. Robust Registration of Multi-Modal Medical Images: Towards Real-Time Clinical Applications. Research report RR-4333, INRIA, 2001. Keyword(s): registration, matching, real time, parallelism, magnetic resonance. [bibtex-entry]



13. Alexis Roche, Xavier Pennec, Grégoire Malandain, Nicholas Ayache, and Sébastien Ourselin. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. Research report RR-3980, INRIA, July 2000. Note: Published in IEEE TMI 20(10), oct. 2001, p. 25-31. Keyword(s): registration, matching, multimodal, magnetic resonance, ultrasound, correlation ratio. [bibtex-entry]



14. K. Krissian, G. Malandain, N. Ayache, R. Vaillant, and Y. Trousset. Model Based Detection of Tubular Structures in 3D Images. Research report RR-3736, INRIA, July 1999. Keyword(s): vessels, multiscale analysis, centerline detection. [bibtex-entry]



15. A. Roche, G. Malandain, and N. Ayache. Unifying Maximum Likelihood Approaches in Medical Image Registration. Research report RR-3741, INRIA, July 1999. [bibtex-entry]



16. Marie-Laure Tabary, Nicholas Ayache, Jacques Darcourt, and Grégoire Malandain. Analyse statistique d'images médicales : étude et utilisation du logiciel SPM. Research report RR-3802, INRIA, November 1999. [bibtex-entry]



17. K. Krissian, G. Malandain, and N. Ayache. Model Based Multiscale Detection and Reconstruction of 3D Vessels. Research report RR-3442, INRIA, March 1998. [bibtex-entry]



18. Alexis Roche, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. Multimodal Image Registration by Maximization of the Correlation Ratio. Research report RR-3378, INRIA, August 1998. Note: Published in MICCAI'98, Cambridge, USA, LNCS 1496, p. 1115-1124. Keyword(s): registration, matching, multimodal, correlation ratio. [bibtex-entry]



19. Luc Soler, G. Malandain, and H. Delingette. Segmentation automatique des réseaux vasculaires dans les images d'angiographie 3D. Research report RR-3496, INRIA, 1998. Keyword(s): tech-report, reconstruction. [bibtex-entry]



20. S. Fernández-Vidal and G. Malandain. Squelettes euclidiens d'objets discrets n-dimensionnels. Research report RR-2771, INRIA, 2004 route des Lucioles BP 93, 06902 Sophia Antipolis Cedex, France, janvier 1996. Note: Published in Image and Vision Computing. [bibtex-entry]



21. K. Krissian, G. Malandain, and N. Ayache. Directional Anisotropic Diffusion applied to segmentation of vessels in 3D images. Research report RR-3064, Inria Sophia Antipolis, 2004 route des Lucioles BP 93 06902 Sophia Antipolis Cedex (France), December 1996. [bibtex-entry]



22. L. Robert and G. Malandain. Fast Binary Image Processing Using Binary Decision Diagrams. Research report RR-3001, INRIA, 2004 route des Lucioles BP 93, 06902 Sophia Antipolis Cedex, France, octobre 1996. [bibtex-entry]



23. G. Malandain, S. Fernández-Vidal, and J.-M. Rocchisani. Physically Based Rigid Registration of 3-D Free-Form Objects: Application to Medical Imaging. Research report RR-2453, INRIA, January 1995. [bibtex-entry]



24. Grégoire Malandain. On topology in multidimensional discrete spaces. Research report RR-2098, INRIA, 2004 route des Lucioles BP 93, 06902 Sophia Antipolis Cedex, France, November 1993. [bibtex-entry]



25. G. Malandain and J.-M. Rocchisani. Matching of 3-D medical images with a potential based method. Research report RR-1890, INRIA, March 1993. Keyword(s): registration, matching. [bibtex-entry]



26. G. Bertrand and G. Malandain. A New Characterization of three-dimensional Simple Points. Internal report, ESIEE, 1992. [bibtex-entry]



27. Grégoire Malandain, G. Bertrand, and Nicholas Ayache. Segmentation topologique des surfaces discretes. Research report RR-1357, INRIA, décembre 1990. [bibtex-entry]



28. Olivier Monga, Rachid Deriche, G. Malandain, and J.P. Cocquerez. Recursive filtering and edge closing : two primary tools for 3d edge detection. Research report RR-1103, INRIA, October 1989. [bibtex-entry]

1. Tom Vercauteren, Aymeric Perchant, Nicholas Ayache, Xavier Pennec, and Grégoire Malandain. Robust Mosaicing Method with Correction of Motion Distorsions and Tissue Deformations for In Vivo Fibered Microscopy. US Patent Application 2009/0041314 (file 02.08.2007, published 12.02.2009), August 2007. [bibtex-entry]



2. Alexis Roche, Grégoire Malandain, Nicholas Ayache, and Xavier Pennec. Electronic device for automatic registration of images. US patent No US 6,539,127 B1, Mars 25, 2003, March 2003. [bibtex-entry]



3. David Rey, Grégoire Malandain, Nicholas Ayache, and Jonathan Stoeckel. Dispositif de méthode de traitement d'image pour détection de lèsions évolutives. FR0113192,FR0115780, 2001. [bibtex-entry]



4. Alexis Roche, Grégoire Malandain, Nicholas Ayache, and Xavier Pennec. Dispositif électronique de recalage automatique d'images. French patent No FR 98 09649, Bulletin officiel de la propriété intellectuelle no 00/39 du Sept. 09 2000. European extension No 99401881, September 2000. [bibtex-entry]



5. Grégoire Malandain and Luc Robert. Dispositif de traitement de données d'acquisition, notamment de données d'image. FR9808087, 1998. [bibtex-entry]

1. Léo Guignard, Ulla-Maj Fiuza, Bruno Leggio, Emmanuel Faure, Julien Laussu, Lars Hufnagel, Grégoire Malandain, Christophe Godin, and Patrick Lemaire. Contact-dependent cell communications drive morphological invariance during ascidian embryogenesis, December 2017. Note: BioRxiv preprint first posted online Dec. 24, 2017; doi: http://dx.doi.org/10.1101/238741. The copyright holder for this preprint (which was not peer-reviewed) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license. [bibtex-entry]



2. Marine Breuilly, Grégoire Malandain, Nicholas Ayache, Jacques Darcourt, Thierry Pourcher, and Philippe Franken. Simulated breath-hold reconstruction in micro-SPECT: Application to peritoneal metastases expressing NIS as reporter gene, 2012. [bibtex-entry]



3. Marine Breuilly, Grégoire Malandain, Nicholas Ayache, Philippe Franken, Jacques Darcourt, and Thierry Pourcher. Simulated breath-hold reconstruction in micro-SPECT: application to peritoneal metastases expressing NIS as reporter gene. 2nd second Molecular Imaging in Biology and Oncology (MIBO) workshop (MIBO2012), Nice, January 2012. [bibtex-entry]



4. Marine Breuilly, Grégoire Malandain, Jacques Darcourt, Thierry Pourcher, and Philippe Franken. Prise en compte du mouvement respiratoire du petit animal pour la reconstruction 3D TEMP synchronisée : application aux métastases péritonéales, 2012. Note: 50e colloque de Médecine Nucléaire de Langue Françcaise. ISSN: 0928-1258. [bibtex-entry]



5. Michel Dojat, Mélanie Pélégrini-Issac, Farooq Ahmad, Christian Barillot, Bénédicte Batrancourt, Alban Gaignard, Bernard Gibaud, Pascal Girard, David Godard, Gilles Kassel, Diane Lingrand, Grégoire Malandain, Franck Michel, Johan Montagnat, Xavier Pennec, Javier Balderrama, and Bacem Wali. NeuroLOG: A framework for the sharing and reuse of distributed tools and data in neuroimaging. 17th Annual Meeting of the Organization for Human Brain Mapping (OHBM), June 26-30, 2011. [bibtex-entry]



6. Marine Breuilly, Grégoire Malandain, Nicholas Ayache, Philippe Franken, Jacques Darcourt, and Thierry Pourcher. Definition of motionless phases for monitoring gated reconstruction of SPECT images in alive mice. ICVSS 2010, July 2010. [bibtex-entry]



7. Mikael Cohen, Christine Lebrun, Dominique Aufauvre, Stéphane Chanalet, Christelle Filleau, William Camu, Pierre Thomas, Grégoire Malandain, and Pierre Clavelou. Longitudinal MRI assessment of quality of life and disability in early treated relapsing remitting multiple sclerosis. American Academy of Neurology Annual Meeting, April 2010. Keyword(s): multiple sclerosis. [bibtex-entry]



8. Liliane Ramus, Souha Aouadi, Yoann Pointreau, Guillaume Bera, Yungan Tao, Anne Beaudré, Vincent Grégoire, and Grégoire Malandain. Design and use of patient-specific atlases for radiotherapy planning of the head and neck region. Acts of the 29th European Society for Therapeutic Radiology and Oncology (ESTRO), 2010. [bibtex-entry]



9. Juliette Thariat, Liliane Ramus, Philippe Maingon, Vincent Grégoire, Vincent Darcourt, Serge Marcie, and Grégoire Malandain. Atlas de contourage automatique des dents pour l'optimisation des soins dentaires. 21e Congrès de la Société Française de Radiothérapie Oncologique (SFRO), 2010. [bibtex-entry]



10. Juliette Thariat, Liliane Ramus, Philippe Maingon, Vincent Grégoire, Serge Marcie, and Grégoire Malandain. Construction of a dental atlas for automatic teeth segmentation to improve post-irradiation dental care management. 52nd Annual Meeting of the American Society for Therapeutic Radiology and Oncology (ASTRO), 2010. [bibtex-entry]



11. Sébastien Novellas, Grégoire Malandain, Jimena Costa, Jean-Christophe Souplet, Nicholas Ayache, and P Chevallier. Apport d'un algorithme de segmentation semi-automatique pour analyse des adénopathies médiastinales. Journées Françaises de Radiologie, October 2008. [bibtex-entry]



12. Erik Pernod, Jean-Christophe Souplet, Mikael Cohen, Nicolas Toussaint, Christine Lebrun, and Grégoire Malandain. SepINRIA v1.7.2: Multiple Sclerosis Brain MRI visualisation, comparison and analysis Software. World Congress for Treatment and Research in Multiple Sclerosis (WCTRIMS), September 2008. Keyword(s): multiple sclerosis, SepINRIA. [bibtex-entry]



13. Jean-Christophe Souplet, Pierre Fillard, Nicolas Toussaint, Christine Lebrun, and Grégoire Malandain. SepINRIA: A software to analyse Multiple Sclerosis Brain MRI. 60th American Academy of Neurology Annual Meeting, April 2008. Keyword(s): multiple sclerosis, SepINRIA. [bibtex-entry]



14. Jean-Christophe Souplet, Christine Lebrun, Pierre Clavelou, William Camu, Stéphane Chanalet, Nicholas Ayache, and Grégoire Malandain. A Comparative Study of Atrophy Measurements in Multiple Sclerosis. 17th Franco-UK scientific meeting of ARSEP (François Lhermitte Conferences), March 2008. [bibtex-entry]



15. Jean-Christophe Souplet, Christine Lebrun, Pierre Clavelou, William Camu, Stéphane Chanalet, Nicholas Ayache, and Grégoire Malandain. A New Atrophy Measurement Method dedicated to Multiple Sclerosis. 60th American Academy of Neurology Annual Meeting, April 2008. [bibtex-entry]



16. Jean-Christophe Souplet, Christine Lebrun, and Grégoire Malandain. SepINRIA v1.7.1: A Free Software for Lesion Segmentation and Atrophy Evaluation dedicated to Multiple Sclerosis Brain MRI. Journal of Neurology - 18th European Neurological Society Meeting, June 2008. Keyword(s): multiple sclerosis, SepINRIA. [bibtex-entry]



17. Jean-Christophe Souplet, Christine Lebrun, and Grégoire Malandain. SepINRIA: Un logiciel gratuit dédié à l'analyse d'Images de Résonance Magnétique cérébrales de patients atteints de sclérose en Plaques. Journées de Neurologie de Langue Française, April 2008. Keyword(s): multiple sclerosis, SepINRIA. [bibtex-entry]



18. P.-Y. Bondiau, J. Thariat, K. Bénézery, J. Hérault, C. Dalmasso, S. Marcié, and G. Malandain. Doses aux organes à risque cérébraux : optimisation par radiothérapie stéréotaxique robotisée et atlas de segmentation automatique versus radiothérapie conformationnelle tridimensionnelle. 18e Congrès de la Société Française de Radiothérapie Oncologique (SFRO), 2007. Note: Cancer radiothérapie 11(6-7):399, 2007. [bibtex-entry]



19. A. Isambert, V. Gregoire, F. Bidault, G. Calais, O. Commowick, G. Malandain, J.B. Ruaud, M. Tomsej, C. Bramoulle, J. Bourhis, and D. Lefkopoulos. Atlas-based automatic segmentation (ABAS) of head and neck (H&N) structures in conformal radiotherapy (CRT). Acts of the 26th European Society for Therapeutic Radiology and Oncology (ESTRO), 2007. [bibtex-entry]



20. Christine Lebrun, Stéphane Chanalet, Jean-Christophe Souplet, Nicholas Ayache, and Grégoire Malandain. Imaging pre-treatment tools and automatic segmentation of lesion burden. Journées Internationales de la Société Française de Neurologie, June 2007. Keyword(s): multiple sclerosis. [bibtex-entry]



21. Jean-Christophe Souplet, Christine Lebrun, Pierre Clavelou, William Camu, Stéphane Chanalet, Nicholas Ayache, and Grégoire Malandain. A comparative study of skull stripping methods in relapsing-remitting multiple sclerosis: Emergence of a new automatic segmentation algorithm. Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), October 2007. Keyword(s): multiple sclerosis, skull-stripping. [bibtex-entry]



22. Jean-Christophe Souplet, Christine Lebrun, Pierre Fillard, Nicholas Ayache, Pierre Clavelou, and Grégoire Malandain. SepINRIA : un outil d'évaluation de la charge lésionnelle chez des patients atteints de sclérose en plaques. Journées Internationales de la SFN : Sclérose en Plaques (Multiple Sclerosis), June 2007. Note: Abstract in Revue Neurologique (Paris) 2007; 163: 6-7, 725. Keyword(s): multiple sclerosis, SepINRIA, MedINRIA. [bibtex-entry]



23. Aurélie Isambert, Guillaume Bonniaud, R. Lery, R. Comtat, Jean-Christophe Diaz, Grégoire Malandain, and Dimitri Lefkopoulos. Evaluation sur fantôme d'un logiciel de recalage d'images multimodales automatique pour la radiothérapie. 17e Congrès de la Société Française de Radiothérapie Oncologique (SFRO), November 2006. Note: Cancer radiothérapie 10(6-7):507, 2006. [bibtex-entry]



24. Aurélie Isambert, Frédéric Dhermain, F. Bidault, Guillaume Bonniaud, R. Lery, Grégoire Malandain, Olivier Commowick, Jean-Christophe Diaz, Jean Bourhis, and Dimitri Lefkopoulos. Evaluation of Multimodality Image Registration Software and Atlas-based Automatic Segmentation for Delineation of Organs at Risk (OAR) in the Brain in Conformal Radiotherapy (CRT). 48th Annual Meeting of the American Society for Therapeutic Radiology and Oncology (ASTRO), November 2006. Keyword(s): Multimodality image registration, atlas-based automatic segmentation, radiation therapy. [bibtex-entry]



25. Aurélie Isambert, Frédéric Dhermain, Guillaume Bonniaud, F. Bidault, A. Beaudre, Grégoire Malandain, Olivier Commowick, Jean-Christophe Diaz, M. Ricard, Jean Bourhis, and Dimitri Lefkopoulos. Evaluation d'un logiciel de recalage d'images multimodal et d'un outil de segmentation automatique des organes à risque (OAR) intra-crâniens en situation clinique d'une radiothérapie conformationnelle 3D (RTC3D). Congrès annuel de la Société Française des Physiciens Médicaux (SFPM), June 2006. [bibtex-entry]



26. G. Dugas-Phocion, C. Lebrun, S. Chanalet, M. Chatel, N. Ayache, and G. Malandain. Automatic segmentation of white matter lesions in multi-sequence MRI of relapsing-remitting multiple sclerosis patients. 21th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), September 2005. Keyword(s): multiple sclerosis. [bibtex-entry]



27. A. Isambert, F. Dhermain, A. Beaudre, G. Malandain, O. Commowick, J.C. Diaz, F. Bidault, P.Y. Bondiau, J. Bourhis, M. Ricard, and D. Lefkopoulos. Requirements for the use of an atlas-based automatic segmentation for delineation of Organs at risk (OAR) in conformal radiotherapy (CRT): quality assurance (QA) and preliminary results for 22 adult patients with primary brain tumors. Acts of the 24th European Society for Therapeutic Radiology and Oncology (ESTRO 2005), 2005. [bibtex-entry]



28. Mauricio A. Reyes, Gregoire Malandain, Nicholas Ayache, Jacques Darcourt, and Pierre M. Koulibaly. Respiratory Motion Compensation within Emission Tomographic Reconstruction. 52nd Annual Meeting of the Society of Nuclear Medicine, June 2005. [bibtex-entry]



29. Caroline Bensa, Grégoire Malandain, Stéphane Chanalet, Christelle Bertogliati, Octave Migneco, Marcel Chatel, and Christine Lebrun. Multiple Sclerosis and Mild Cognitive Impairment. American Academy of Neurology, 56th Annual Meeting, April-May 2004. Keyword(s): multiple sclerosis. [Abstract] [bibtex-entry]



30. PY Bondiau, G Malandain, O Commowick, PY Marcy, S Chanalet, and N Ayache. Atlas-based Automatic Segmentation of MR Images: Validation Study on the Brainstem in Radiotherapy Context. 90th Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA), 2004. [bibtex-entry]



31. Olivier Commowick, Pierre-Yves Bondiau, and Grégoire Malandain. Segmentation automatique des tissus cérébraux en présence de structures pathologiques. Proceedings of the 43th Journées Scientifiques de la Société Française de Physique Médicale (SFPM), June 2004. [bibtex-entry]



32. Guillaume Dugas-Phocion, Miguel Ángel González Ballester, Christine Lebrun, Stéphane Chanalet, Caroline Bensa, Marcel Chatel, Nicholas Ayache, and Grégoire Malandain. Automatic segmentation of white matter lesions in T2 FLAIR MRI of relapsing-remitting multiple sclerosis patients. 20th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), October 2004. Keyword(s): multiple sclerosis. [bibtex-entry]



33. Guillaume Dugas-Phocion, Miguel Ángel González Ballester, Christine Lebrun, Stéphane Chanalet, Caroline Bensa, and Grégoire Malandain. Segmentation automatique des hypersignaux de la substance blanche (HSB) sur des IRM T2 FLAIR de patients atteints de forme rémittente de sclérose en plaques. Journées de Neurologie de Langue Française, April 2004. Keyword(s): multiple sclerosis. [bibtex-entry]



34. Christine Lebrun, Caroline Bensa, Grégoire Malandain, Christelle Bertogliati, Octave Migneco, and M.-N. Magnie. Sclérose en plaque et troubles cognitifs mineurs. Journées de Neurologie de Langue Française, April 2004. Keyword(s): multiple sclerosis. [bibtex-entry]



35. C. Bensa, S. Chanalet, G. Malandain, C. Bertogliati, P. Bedoucha, M.N. Mauro, M. Chatel, and C. Lebrun. Sclérose en plaques et troubles cognitifs mineurs. Journées de Neurologie de Langue Française, April 2003. Note: Revue Neurologique, tome 159, page 2S63. Keyword(s): multiple sclerosis. [bibtex-entry]



36. C. Bensa, S. Chanalet, G. Malandain, C. Bertogliatti, P. Bedoucha, M.N. Magnié, M. Chatel, and C. Lebrun. Multiple sclerosis and mild cognitive impairment. 19th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), September 2003. Note: Multiple Sclerosis, P545, pp S136. Keyword(s): multiple sclerosis. [bibtex-entry]



37. C. Lebrun, D. Rey, S. Chanalet, N. Ayache, M. Chatel, and G. Malandain. First validation experiments of a 3-D automatic algorithm based on a vector field analysis to detect and quantify volume variation of multiple sclerosis lesions. 19th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), September 2003. Note: Multiple Sclerosis, P455, pp S112. Keyword(s): multiple sclerosis. [bibtex-entry]



38. C. Lebrun, D. Rey, S. Chanalet, V. Bourg, M. Chatel, N. Ayache, and G. Malandain. Intérêt du recalage automatique des IRM cérébrales dans le suivi et la décision thérapeutique : application à la sclérose en plaques. 10èmes Journées Jean-Denis-Degos Thérapeutique et Neurologie, December 2003. Keyword(s): multiple sclerosis. [bibtex-entry]



39. P.-Y. Bondiau, G. Malandain, P.-Y. Marcy, F. Peyrade, M. Frenay, and J.-P. Gérard. Contourage automatique de l'encépahle utilisant la fusion d'image avec atlas : résultats sur 3 patients. 13ème Congrès National de la Société Française de Radiothérapie Oncologique (SFRO), November 2002. [bibtex-entry]



40. P.Y. Bondiau, O. Ostapiak, G. Malandain, T. Toubiana, K. Benezery, J.M. Hannoun-Levi, R.J. Bensadoun, A. Courdi, D. Leschi, P. Chauvel, and J.P. Gerard. Fusion de la tomographie par émission de positons (TEP) fonctionnelle et du Scanner dosimétrique : Etude de faisabilité pour le traitement des tumeurs cérébrales. Proc. du premier atelier de radiothérapie assistée par l'image, 4 et 5 mai 2001. [bibtex-entry]



41. K. Bénézery, F. Perret, P.-Y. Bondiau, G. Malandain, and N. Ayache. Recalage et Fusion d'images Scanner et IRM du pelvis : utilisation dans le traitement du cancer de la prostate. 12ème Congrès de la Société Française de Radiothérapie Oncologique (SFRO), 22-23 Novembre 2001. [bibtex-entry]



42. Y. Chau, D. Rey, G. Malandain, C. Raffaelli, and B. Padovani. Extraction automatique des structures arborescentes pulmonaires, semi-automatique des segments pulmonaires à partir de TDM thoraciques normales. Journées Françaises de Radiologie, JFR'2001, October 2001. [bibtex-entry]



43. C. Lebrun-Frenay, D. Rey, G. Malandain, S. Chanalet, N. Ayache, and M. Chatel. Detection and quantification of MS lesions MRI variations by mathematical differential operators. 16th Congress of the European Committee for Treatment and Research in Multiple Sclerosis, septembre 6-9 2000. Note: Revue Neurologique (Supplement), 156(3S104). Keyword(s): multiple sclerosis. [bibtex-entry]



44. D. Rey, C. Lebrun-Frenay, G. Malandain, S. Chanalet, N. Ayache, and M. Chatel. A New Method to Detect and Quantify Evolving MS Lesions by Mathematical Operators. American Academy of Neurology, 52nd Annual Meeting, May 2000. Note: Neurology (Supplement 3) 54(7):123. Keyword(s): multiple sclerosis. [bibtex-entry]



45. P.Y. Bondiau, G. Malandain, K. Benezery, A. Roche, R. Ferrand, D. Pontvert, J. L. Habrand, and J. N. Bruneton. Full Automatic CT Scan and MRI Matching : Use for Brain Tumor Radiotherapy. Proc of RSNA'99, 27 nov au 3 déc 1999. Note: Supplement to Radiology 1999; 213, 236. [bibtex-entry]



46. L. Soler, G. Malandain, H. Delingette, and J. Montagnat. Computerized anatomical segmentation of the liver from helical CT-Scanners. ERCIM News No.31, October 1997. [bibtex-entry]



47. N. Ayache, E. Bardinet, S. Benayoun, H. Delingette, G. Malandain, S. Fernández-Vidal, L. Soler, J. Montagnat, S. Cotin, G. Subsol, and J.-P. Thirion. Analysis of medical images : Registration, Atlas, Motion. Audiovisual material produced by INRIA audiovisuel, 1996. Keyword(s): video, simulation. [bibtex-entry]

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