Publications of Pierre Fillard

1. Pierre Fillard. Riemannian Processing of Tensors for Diffusion MRI and Computational Anatomy of the Brain. PhD Thesis, University of Nice-Sophia Antipolis, February 2008. [bibtex-entry]

1. Xavier Pennec and Pierre Fillard. Statistical Computing on Non-Linear Spaces for Computational Anatomy. In Paragios, Nikos, Duncan, Jim, Ayache, and Nicholas, editors, Handbook of Biomedical Imaging: Methodologies and Clinical Research, pages 147-168. Springer, 2015. [bibtex-entry]



2. Antoine Iannessi, Pierre Yves Marcy, Olivier Clatz, Nicholas Ayache, and Pierre Fillard. Touchless User Interface for Intraoperative Image Control: Almost There. Radiographics, 34(4), July 2014. [bibtex-entry]



3. A Iannessi, P.-y Marcy, O Clatz, P Fillard, and N Ayache. Touchless intra-operative display for interventional radiologist. Diagnostic and Interventional Imaging, 2014. Keyword(s): User-computer interface, Gesture, CT-scan, Interventional radiology, Sterility. [bibtex-entry]



4. Stanley Durrleman, Pierre Fillard, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Registration, Atlas Estimation and Variability Analysis of White Matter Fiber Bundles Modeled as Currents. NeuroImage, 55(3):1073-1090, 2011. ISSN: 1053-8119. Keyword(s): Computational Anatomy. [bibtex-entry]



5. Boon Thye Thomas Yeo, Tom Vercauteren, Pierre Fillard, Jean-Marc Peyrat, Xavier Pennec, Polina Golland, Nicholas Ayache, and Olivier Clatz. DT-REFinD: Diffusion Tensor Registration with Exact Finite-Strain Differential. IEEE Transactions on Medical Imaging, 28(12):1914-1928, December 2009. Note: PMID:19556193. [bibtex-entry]



6. D R Rutgers, P Fillard, G Paradot, M Tadie, P Lasjaunias, and D Ducreux. Diffusion tensor imaging characteristics of the corpus callosum in mild, moderate, and severe traumatic brain injury. AJNR. American journal of neuroradiology, 29(9):1730-5, October 2008. Keyword(s): Adult, Anisotropy, Brain Concussion, diagnosis, Brain Injuries, diagnosis, Corpus Callosum, injuries, Diffuse Axonal Injury, diagnosis, Diffusion Magnetic Resonance Imaging, Female, Follow-Up Studies, Humans, Image Processing Computer-Assisted, Male, Middle Aged, Nerve Fibers, pathology, Young Adult. [Abstract] [bibtex-entry]



7. D R Rutgers, F Toulgoat, J Cazejust, P Fillard, P Lasjaunias, and D Ducreux. White matter abnormalities in mild traumatic brain injury: a diffusion tensor imaging study. AJNR. American journal of neuroradiology, 29(3):514-9, March 2008. Keyword(s): Adult, Brain, pathology, Brain Injuries, pathology, Demyelinating Diseases, pathology, Diffusion Magnetic Resonance Imaging, methods, Female, Humans, Male, Nerve Fibers Myelinated, pathology, Reproducibility of Results, Sensitivity and Specificity. [Abstract] [bibtex-entry]



8. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Geometric Means in a Novel Vector Space Structure on Symmetric Positive-Definite Matrices. SIAM Journal on Matrix Analysis and Applications, 29(1):328-347, 2007. Keyword(s): DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics. [bibtex-entry]



9. D. Ducreux, P. Fillard, D. Facon, A. Ozanne, J.-F. Lepeintre, J. Renoux, M. Tadié, and P. Lasjaunias. Diffusion Tensor Magnetic Resonance Imaging and Fiber Tracking in Spinal Cord Lesions: Current and Future Indications. Neuroimaging Clinics of North America, 17(1):137-147, February 2007. [bibtex-entry]



10. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Kiralee M. Hayashi, Paul M. Thompson, and Nicholas Ayache. Measuring Brain Variability by Extrapolating Sparse Tensor Fields Measured on Sulcal Lines. NeuroImage, 34(2):639-650, January 2007. Note: Also as INRIA Research Report 5887, April 2006. PMID: 17113311. [bibtex-entry]



11. Pierre Fillard, Xavier Pennec, Vincent Arsigny, and Nicholas Ayache. Clinical DT-MRI Estimation, Smoothing and Fiber Tracking with Log-Euclidean Metrics. IEEE Transactions on Medical Imaging, 26(11):1472-1482, November 2007. [bibtex-entry]



12. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Log-Euclidean Metrics for Fast and Simple Calculus on Diffusion Tensors. Magnetic Resonance in Medicine, 56(2):411-421, August 2006. Keyword(s): DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics. [bibtex-entry]



13. Denis Ducreux, Frédéric Dhermain, and Pierre Fillard. [Functional MRI in brain tumours]. Cancer radiothérapie, 10(6-7):330-3, November 2006. Note: [In French]. Keyword(s): Brain, anatomy & histology, Brain Mapping, Brain Neoplasms, pathology, Humans, Magnetic Resonance Imaging, methods, Prognosis. [Abstract] [bibtex-entry]



14. Denis Ducreux, Jean-Francois Lepeintre, Pierre Fillard, C. Loureiro, Marc Tadié, and Pierre Lasjaunias. MR diffusion tensor imaging and fiber tracking in 5 spinal cord astrocytomas. AJNR. American journal of neuroradiology, 27(1):214-6, January 2006. Keyword(s): Adult, Astrocytoma, diagnosis, Diffusion Magnetic Resonance Imaging, Female, Humans, Image Processing Computer-Assisted, Imaging Three-Dimensional, Male, Nerve Fibers, pathology, Spinal Cord, pathology, Spinal Cord Neoplasms, diagnosis. [Abstract] [bibtex-entry]



15. M. Liberatore, C. Denier, Pierre Fillard, M.C. Petit-Lacour, F. Benoudiba, Pierre Lasjaunias, and Denis Ducreux. [Diffusion tensor imaging and tractography of central pontine myelinolysis]. J Neuroradiol, 33(3):189-193, June 2006. Note: [In French]. Keyword(s): Adult, Anorexia, complications, Diffusion Magnetic Resonance Imaging, Female, Humans, Myelinolysis Central Pontine, diagnosis, Pyramidal Tracts, pathology. [Abstract] [bibtex-entry]



16. Xavier Pennec, Pierre Fillard, and Nicholas Ayache. A Riemannian Framework for Tensor Computing. International Journal of Computer Vision, 66(1):41-66, January 2006. Note: A preliminary version appeared as INRIA Research Report 5255, July 2004. Keyword(s): Tensors, regularization, PDE, geometry, Riemannian geometry. [Abstract] [bibtex-entry]



17. J Renoux, D Facon, P Fillard, I Huynh, P Lasjaunias, and D Ducreux. MR diffusion tensor imaging and fiber tracking in inflammatory diseases of the spinal cord. AJNR. American journal of neuroradiology, 27(9):1947-51, October 2006. Keyword(s): Adult, Anisotropy, Diagnosis Differential, Diffusion Magnetic Resonance Imaging, Female, Humans, Image Enhancement, Image Processing Computer-Assisted, Male, Middle Aged, Multiple Sclerosis, diagnosis, Myelitis, diagnosis, Myelitis Transverse, diagnosis, Nerve Fibers, pathology, Neurologic Examination, Prospective Studies, Reference Values, Sarcoidosis, diagnosis, Spinal Cord, pathology. [Abstract] [bibtex-entry]



18. D. Ducreux, I. Huynh, P. Fillard, J. Renoux, M.C. Petit-Lacour, K. Marsot-Dupuch, and P. Lasjaunias. Brain MR Diffusion Tensor Imaging and Fibre Tracking to Differentiate Between Two Diffuse Axonal Injuries. Neuroradiology, 47(8):604-608, August 2005. [bibtex-entry]



19. D. Facon, A. Ozanne, P. Fillard, J.-F. Lepeintre, C. Tournoux-Facon, and D. Ducreux. MR Diffusion Tensor Imaging and Fiber Tracking in Spinal Cord Compression. AJNR. American journal of neuroradiology, 26:1587-1594, 2005. [bibtex-entry]

1. Benoît Audelan, Lopez Stéphanie, Pierre Fillard, Yann Diascorn, Bernard Padovani, and Hervé Delingette. Validation of lung nodule detection a year before diagnosis in NLST dataset based on a deep learning system. In ERS 2021 - European Respiratory Society International Congress, Virtual, United Kingdom, September 2021. [bibtex-entry]



2. Viviana Siless, Pamela Guevara, Xavier Pennec, and Pierre Fillard. Joint T1 and Brain Fiber Diffeomorphic Registration Using the Demons. In Tianming Liu, Dinggang Shen, Luis Ibanez, and Xiaodong Tao, editors, Multimodal Brain Image Analysis (First Int. MICCAI Workshop on), volume 7012 of Lecture Notes in Computer Science, pages 10-18, 2011. Springer. ISBN: 978-3-642-24445-2. Keyword(s): Registration - neural fibers - diffeomorphism - Demons Algorithm - intensity-base registration - tensor-base registration. [Abstract] [bibtex-entry]



3. Stanley Durrleman, Pierre Fillard, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. A Statistical Model of White Matter Fiber Bundles based on Currents. In Jerry L. Prince, Dzung L. Pham, and Kyle J. Myers, editors, Proceedings of Information Processing in Medical Imaging (IPMI'09), volume 5636 of LNCS, pages 114-125, 2009. [bibtex-entry]



4. Olivier Commowick, Pierre Fillard, Olivier Clatz, and Simon K. Warfield. Detection of DTI White Matter Abnormalities in Multiple Sclerosis Patients. In Dimitris Metaxas and Leon Axel, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), volume 5241 of Lecture Notes in Computer Science, New York, USA, pages 975-982, September 2008. Springer. [Annotation] [bibtex-entry]



5. Boon Thye Thomas Yeo, Tom Vercauteren, Pierre Fillard, Xavier Pennec, Polina Golland, Nicholas Ayache, and Olivier Clatz. DTI Registration with Exact Finite-Strain Differential. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 2008. IEEE. [bibtex-entry]



6. P. Fillard, X. Pennec, P.M. Thompson, and N. Ayache. Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines. In Proc. of MICCAI'07 Workshop on Statistical Registration: Pair-wise and Group-wise Alignment and Atlas Formation, Brisbane, Australia, 2007. [bibtex-entry]



7. N. Toussaint, M. Sermesant, and P. Fillard. vtkINRIA3D: A VTK Extension for Spatiotemporal Data Synchronization, Visualization and Management. In Proc. of Workshop on Open Source and Open Data for MICCAI, Brisbane, Australia, October 2007. [bibtex-entry]



8. N. Toussaint, J.C. Souplet, and P. Fillard. MedINRIA: Medical Image Navigation and Research Tool by INRIA. In Proc. of MICCAI'07 Workshop on Interaction in medical image analysis and visualization, Brisbane, Australia, 2007. [bibtex-entry]



9. Pierre Fillard, Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Clinical DT-MRI estimation, smoothing and fiber tracking with log-Euclidean metrics. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 786-789, April 2006. Keyword(s): DT-MRI, tensor estimation, Riemannian geometry, Log-Euclidean metrics. [bibtex-entry]



10. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Fast and Simple Calculus on Tensors in the Log-Euclidean Framework. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part I, volume 3749 of LNCS, Palm Springs, CA, USA, October 26-29, pages 115-122, 2005. Springer. Keyword(s): DT-MRI, Magnetic Resonance Imaging, Tensors, brain, Riemannian geometry, Lie group, regularization, interpolation, Log-Euclidean metrics. [bibtex-entry]



11. Olivier Commowick, Radu Stefanescu, Pierre Fillard, Vincent Arsigny, Nicholas Ayache, Xavier Pennec, and Grégoire Malandain. Incorporating Statistical Measures of Anatomical Variability in Atlas-to-Subject Registration for Conformal Brain Radiotherapy. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part II, volume 3750 of LNCS, Palm Springs, CA, USA, October 26-29, pages 927-934, 2005. Springer. Keyword(s): registration, brain, Brain Stem, statistics, validation, Tensors. [Annotation] [bibtex-entry]



12. Pierre Fillard, Vincent Arsigny, Nicholas Ayache, and Xavier Pennec. A Riemannian Framework for the Processing of Tensor-Valued Images. In Ole Fogh Olsen, Luc Florak, and Arjan Kuijper, editors, Deep Structure, Singularities, and Computer Vision (DSSCV), LNCS, pages 112-123, June 2005. Springer. Keyword(s): Tensors, Riemannian geometry, Structure tensors, regularization. [bibtex-entry]



13. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Paul M. Thompson, and Nicholas Ayache. Extrapolation of Sparse Tensor Fields: Application to the Modeling of Brain Variability. In Gary Christensen and Milan Sonka, editors, Proc. of Information Processing in Medical Imaging 2005 (IPMI'05), volume 3565 of LNCS, Glenwood springs, Colorado, USA, pages 27-38, July 2005. Springer. Keyword(s): Sucal lines, Riemannian geometry, brain, Modeling of anatomical variability, Tensors. [bibtex-entry]



14. Xavier Pennec, Radu Stefanescu, Vincent Arsigny, Pierre Fillard, and Nicholas Ayache. Riemannian Elasticity: A statistical regularization framework for non-linear registration. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part II, volume 3750 of LNCS, Palm Springs, CA, USA, October 26-29, pages 943-950, 2005. Springer. Keyword(s): registration, statistics, Tensors, Riemannian geometry, brain. [bibtex-entry]



15. P. Fillard and G. Gerig. Analysis Tool For Diffusion Tensor MR. In Proc. of MICCAI'03, Part II, volume 2879 of LNCS, pages 967-968, November 2003. Springer. [bibtex-entry]



16. P. Fillard, J. Gilmore, W. Lin, J. Piven, and G. Gerig. Quantitative Analysis of White Matter Fiber Properties along Geodesic Paths. In Proc of MICCAI'03, Part I, volume 2879 of LNCS, pages 16-23, November 2003. Springer. Note: MICCAI'03 Award: Best Student Paper in Image Analysis. [bibtex-entry]

1. Pierre Fillard, Xavier Pennec, Paul M. Thompson, and Nicholas Ayache. Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines. Research report RR-6241, INRIA, 07 2007. [bibtex-entry]



2. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Kiralee M. Hayashi, Paul M. Thompson, and Nicholas Ayache. Measuring Brain Variability by Extrapolating Sparse Tensor Fields Measured on Sulcal Lines. Research report RR-5887, INRIA, April 2006. [bibtex-entry]



3. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Fast and Simple Computations on Tensors with Log-Euclidean Metrics. Research report RR-5584, INRIA, Sophia-Antipolis, France, May 2005. Keyword(s): DT-MRI, Magnetic Resonance Imaging, Tensors, brain, Riemannian geometry, Lie group, regularization, extrapolation, interpolation. [bibtex-entry]



4. Pierre Fillard, Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Joint Estimation and Smoothing of Clinical DT-MRI with a Log-Euclidean Metric. Research report RR-5607, INRIA, Sophia-Antipolis, France, June 2005. Keyword(s): tensors, DT-MRI, DTI, estimation, regularization, fiber tracking, Log-Euclidean, Riemannian geometry. [bibtex-entry]



5. Xavier Pennec, Pierre Fillard, and Nicholas Ayache. A Riemannian Framework for Tensor Computing. Research report RR-5255, INRIA, July 2004. Note: Published in International Journal of Computer Vision 65(1), October 2005. Keyword(s): Tensors, regularization, PDE, geometry, Riemannian geometry. [bibtex-entry]

1. Vincent Arsigny, Xavier Pennec, Pierre Fillard, and Nicholas Ayache. Device for processing raw images or tensor images. US patent US 2008/0170802 (filed 07.04.2006, published 17.07.2008, July 2006. [bibtex-entry]



2. Vincent Arsigny, Xavier Pennec, Pierre Fillard, and Nicholas Ayache. Dispositif perfectionné de traitement ou de production d'images de tenseurs. French patent filing number 0503483, April 2005. Note: International application number PCT/FR2006/000774 published 12.10.2006. [bibtex-entry]

1. Benoît Bleuzé, Olivier Clatz, Pierre Fillard, Maxime Sermesant, Nicolas Toussaint, and Julien Wintz. Horizontal Data Fusion for Integrative Modelling: the MedINRIA Fusion Toolbox. First VPH Conference (VPH2010), Brussels), September 2010. Note: Abstract. [bibtex-entry]



2. Jean-Christophe Souplet, Pierre Fillard, Nicolas Toussaint, Christine Lebrun, and Grégoire Malandain. SepINRIA: A software to analyse Multiple Sclerosis Brain MRI. 60th American Academy of Neurology Annual Meeting, April 2008. Keyword(s): multiple sclerosis, SepINRIA. [bibtex-entry]



3. Xavier Pennec and Pierre Fillard. Avons-nous tous le même cerveau?. In Voir l'invisible, p.112-113, Omniscience, December 2007. ISBN: 978-2-916097-13-8. [bibtex-entry]



4. Xavier Pennec and Pierre Fillard. Les autoroutes de l'information neuronale. In Voir l'invisible, p.116-117, Omniscience, December 2007. ISBN: 978-2-916097-13-8. [bibtex-entry]



5. Jean-Christophe Souplet, Christine Lebrun, Pierre Fillard, Nicholas Ayache, Pierre Clavelou, and Grégoire Malandain. SepINRIA : un outil d'évaluation de la charge lésionnelle chez des patients atteints de sclérose en plaques. Journées Internationales de la SFN : Sclérose en Plaques (Multiple Sclerosis), June 2007. Note: Abstract in Revue Neurologique (Paris) 2007; 163: 6-7, 725. Keyword(s): multiple sclerosis, SepINRIA, MedINRIA. [bibtex-entry]



6. Pierre Fillard, Nicolas Toussaint, and Xavier Pennec. MedINRIA: DT-MRI Processing and Visualization Software, November 2006. Note: Guest paper at the Similar Tensor Workshop, Las Palmas, Spain. [bibtex-entry]



7. Pierre Fillard. Un cadre riemannien pour l'imagerie du tenseur. rapport de Master, Master Optique-Image-Vision spécialité recherche, Université Jean-Monnet Saint Etienne, 2004. [bibtex-entry]

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