-
Barbara André,
Tom Vercauteren,
Anna M. Buchner,
Murli Krishna,
Nicholas Ayache,
and Michael B. Wallace.
Software for Automated Classification of probe-based Confocal Laser Endomicroscopy Videos of Colorectal Polyps.
World Journal of Gastroenterology,
October 2012.
@article{andre:wjg:2012,
author = {Barbara Andr\'e and Tom Vercauteren and Anna M. Buchner and Murli Krishna and Nicholas Ayache and Michael B. Wallace},
journal = {World Journal of Gastroenterology},
month = {October},
title = {Software for Automated Classification of probe-based Confocal Laser Endomicroscopy Videos of Colorectal Polyps},
url = {https://www-sop.inria.fr/asclepios/Publications/Barbara.Andre/ANDRE-WGJ-2012-Submitted.pdf},
url-hal = {https://hal.inria.fr/hal-00813813},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
Barbara André,
Tom Vercauteren,
Anna M. Buchner,
Michael B. Wallace,
and Nicholas Ayache.
Learning Semantic and Visual Similarity for Endomicroscopy Video Retrieval.
IEEE Transactions on Medical Imaging,
31(6):1276-1288,
June 2012.
@article{andre:tmi:2012,
author = {Barbara Andr\'e and Tom Vercauteren and Anna M. Buchner and Michael B. Wallace and Nicholas Ayache},
hal-identifiant = {inria-00618057},
journal = {IEEE Transactions on Medical Imaging},
month = {June},
number = {6},
pages = {1276-1288},
title = {Learning Semantic and Visual Similarity for Endomicroscopy Video Retrieval},
url = {https://www-sop.inria.fr/asclepios/Publications/Barbara.Andre/ANDRE-TMI12-Manuscript.pdf},
url-hal = {https://hal.inria.fr/inria-00618057},
volume = {31},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
R. Blanc,
Christof Seiler,
G. Székely,
L. Nolte,
and Mauricio Reyes.
Statistical Model Based Shape Prediction from a Combination of Direct Observations and Various Surrogates.
Medical Image Analysis (MedIA),
16(6):1156-1166,
2012.
@article{BlancSeiler:MEDIA:2012,
author = {R. Blanc and Christof Seiler and G. Sz\'ekely and L. Nolte and Mauricio Reyes},
journal = {Medical Image Analysis (MedIA)},
number = {6},
pages = {1156-1166},
title = {Statistical Model Based Shape Prediction from a Combination of Direct Observations and Various Surrogates},
url = {https://www-sop.inria.fr/asclepios/Publications/Christof.Seiler/BlancSeilerMedIA2012.pdf},
volume = {16},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
H. Cochet,
Y. Komatsu,
F. Sacher,
A. Jadidi,
D. Scherr,
M. Riffaud,
N. Derval,
A. Shah,
L. Roten,
P. Pascale,
Jatin Relan,
Maxime Sermesant,
Nicholas Ayache,
M. Montaudon,
F. Laurent,
M. Hocini,
M. Haïssaguerre,
and P. Jaïs.
Integration of Merged Delayed-Enhanced Magnetic Resonance Imaging and Multi-Detector Computed Tomography for the Guidance of Ventricular Tachycardia Ablation: A Pilot Study.
Journal of Cardiovascular Electrophysiology,
2012.
ISSN: 1540-8167.
Keyword(s): ventricular tachycardia,
MRI,
computed tomography,
catheter ablation,
myocardial infarction,
cardiomyopathy.
@article{JCE:JCE12052,
author = {Cochet, H. and Komatsu, Y. and Sacher, F. and Jadidi, A. and Scherr, D. and Riffaud, M. and Derval, N. and Shah, A. and Roten, L. and Pascale, P. and Relan, Jatin and Sermesant, Maxime and Ayache, Nicholas and Montaudon, M. and Laurent, F. and Hocini, M. and Ha\"issaguerre, M. and Ja\"is, P.},
doi = {10.1111/jce.12052},
issn = {1540-8167},
journal = {Journal of Cardiovascular Electrophysiology},
keywords = {ventricular tachycardia, MRI, computed tomography, catheter ablation, myocardial infarction, cardiomyopathy},
publisher = {Blackwell Publishing Inc},
title = {Integration of Merged Delayed-Enhanced Magnetic Resonance Imaging and Multi-Detector Computed Tomography for the Guidance of Ventricular Tachycardia Ablation: A Pilot Study},
url = {http://dx.doi.org/10.1111/jce.12052},
url-pdf = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/CochetJCE2012.pdf},
x-editorial-board = {yes},
x-international-audience = {yes},
year = {2012}
}
-
Hervé Delingette,
F. Billet,
Ken C. L. Wong,
Maxime Sermesant,
Kawal Rhode,
M. Ginks,
C. Aldo Rinaldi,
Reza Razavi,
and Nicholas Ayache.
Personalization of Cardiac Motion and Contractility From Images Using Variational Data Assimilation.
Biomedical Engineering, IEEE Transactions on,
59(1):20 -24,
jan. 2012.
ISSN: 0018-9294.
@article{Delingette:TBME:2012,
author = {Herv\'e Delingette and F. Billet and Ken C. L. Wong and Maxime Sermesant and Kawal Rhode and M. Ginks and {C. Aldo} Rinaldi and Reza Razavi and Nicholas Ayache},
doi = {10.1109/TBME.2011.2160347},
hal-identifiant = {inria-00616183},
issn = {0018-9294},
journal = {Biomedical Engineering, IEEE Transactions on},
month = {jan. },
number = {1},
pages = {20 -24},
title = {Personalization of Cardiac Motion and Contractility From Images Using Variational Data Assimilation},
url = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/Delingette-TBME-2011.pdf},
url-hal = {https://hal.inria.fr/inria-00616183},
volume = {59},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
Stanley Durrleman,
Xavier Pennec,
Alain Trouvé,
Nicholas Ayache,
and José Braga.
Comparison of the endocranial ontogenies between chimpanzees and bonobos via temporal regression and spatiotemporal registration.
Journal of Human Evolution,
62(1):74 - 88,
2012.
ISSN: 0047-2484.
Keyword(s): Endocranium.
@article{Durrleman:JHE:12,
author = {Stanley Durrleman and Xavier Pennec and Alain Trouv\'e and Nicholas Ayache and Jos\'e Braga},
doi = {10.1016/j.jhevol.2011.10.004},
issn = {0047-2484},
journal = {Journal of Human Evolution},
keywords = {Endocranium},
number = {1},
pages = {74 - 88},
title = {Comparison of the endocranial ontogenies between chimpanzees and bonobos via temporal regression and spatiotemporal registration},
url = {https://www-sop.inria.fr/asclepios/Publications/Stanley.Durrleman/Durrleman_JHE_2012.pdf},
url-hal = {https://hal.inria.fr/hal-00816048},
volume = {62},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
B. Michael Kelm,
Frederik O. Kaster,
A. Henning,
Marc-André Weber,
P. Bachert,
P. Boesiger,
Fred A. Hamprecht,
and Bjoern H. Menze.
Using spatial prior knowledge in the spectral fitting of MRS images.
NMR in Biomedicine,
25(1):1-13,
2012.
HAL ID: inria-00616193.
@article{kelm:inria-00616193,
author = {{B. Michael} Kelm and Frederik O. Kaster and A. Henning and Marc-Andr\'e Weber and P. Bachert and P. Boesiger and Fred A. Hamprecht and Bjoern H. Menze},
doi = {10.1002/nbm.1704},
journal = {{NMR in Biomedicine}},
number = {1},
pages = {1-13},
publisher = {Wiley},
title = {{Using spatial prior knowledge in the spectral fitting of MRS images}},
url-hal = {http://hal.inria.fr/inria-00616193},
volume = {25},
x-editorial-board = {yes},
x-id-hal = {inria-00616193},
x-international-audience = {yes},
year = {2012}
}
-
Hervé Lombaert,
Jean-Marc Peyrat,
Pierre Croisille,
Stanislas Rapacchi,
Laurent Fanton,
Farida Cheriet,
Patrick Clarysse,
Isabelle Magnin,
Hervé Delingette,
and Nicholas Ayache.
Human Atlas of the Cardiac Fiber Architecture: Study on a Healthy Population.
IEEE Trans. on Medical Imaging,
31(7):1436-1447,
2012.
@article{Lombaert:TMI:12,
author = {Herv\'e Lombaert and Jean-Marc Peyrat and Pierre Croisille and Stanislas Rapacchi and Laurent Fanton and Farida Cheriet and Patrick Clarysse and Isabelle Magnin and Herv\'e Delingette and Nicholas Ayache},
journal = {IEEE Trans. on Medical Imaging},
number = {7},
pages = {1436--1447},
title = {Human Atlas of the Cardiac Fiber Architecture: Study on a Healthy Population},
url = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/TMI-HumanAtlas-CardiacFibers.pdf},
url-hal = {https://hal.archives-ouvertes.fr/hal-00797755},
volume = {31},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
Stéphanie Marchesseau,
Hervé Delingette,
Maxime Sermesant,
and Nicholas Ayache.
Fast Parameter Calibration of a Cardiac Electromechanical Model from Medical Images based on the Unscented Transform.
Biomechanics and Modeling in Mechanobiology,
2012.
@article{Marchesseau:BMMB:2012,
author = {St\'ephanie Marchesseau and Herv\'e Delingette and Maxime Sermesant and Nicholas Ayache},
journal = {Biomechanics and Modeling in Mechanobiology},
title = {Fast Parameter Calibration of a Cardiac Electromechanical Model from Medical Images based on the Unscented Transform},
url = {https://www-sop.inria.fr/asclepios/Publications/Stephanie.Marchesseau/BMMB-Marchesseau2012.pdf},
url-hal = {https://hal.inria.fr/hal-00813847},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
Christophe Person,
Valérie Louis-Dorr,
Sylvain Poussier,
Olivier Commowick,
Grégoire Malandain,
Louis Maillard,
Didier Wolf,
Nicolas Gilet,
Véronique Roch,
Gilles Karcher,
and Pierre-Yves Marie.
Voxel-based quantitative analysis of brain images from F-18 Fluorodeoxyglucose Positron Emission Tomography with a Block-Matching algorithm for spatial normalization.
Clinical Nuclear Medicine,
37(3):268-273,
2012.
HAL ID: hal-00651731.
@article{person:hal-00651731,
author = {Christophe Person and Val{\'e}rie Louis-Dorr and Sylvain Poussier and Olivier Commowick and Gr\'egoire Malandain and Louis Maillard and Didier Wolf and Nicolas Gilet and V{\'e}ronique Roch and Gilles Karcher and Pierre-Yves Marie},
doi = {10.1097/RLU.0b013e3182443b2d},
journal = {{Clinical Nuclear Medicine}},
number = {3},
pages = {268-273},
title = {{Voxel-based quantitative analysis of brain images from F-18 Fluorodeoxyglucose Positron Emission Tomography with a Block-Matching algorithm for spatial normalization}},
url-hal = {http://hal.inria.fr/hal-00651731},
volume = {37},
x-editorial-board = {yes},
x-id-hal = {hal-00651731},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
M. Pop,
Maxime Sermesant,
G. Liu,
Jatin Relan,
Tommaso Mansi,
A. Soong,
Jean-Marc Peyrat,
M.V. Truong,
P. Fefer,
Elliot R. McVeigh,
Hervé Delingette,
A.J. Dick,
Nicholas Ayache,
and G.A Wright.
Construction of 3D MR image-based computer models of pathologic hearts, augmented with histology and optical fluorescence imaging to characterize action potential propagation.
Medical Image Analysis,
16(2):505-523,
February 2012.
@article{Pop:2012:MedIA,
author = {M. Pop and Maxime Sermesant and G. Liu and Jatin Relan and Tommaso Mansi and A. Soong and Jean-Marc Peyrat and M.V. Truong and P. Fefer and {Elliot R.} McVeigh and Herv\'e Delingette and A.J. Dick and Nicholas Ayache and G.A Wright},
journal = {Medical Image Analysis},
month = {Feb},
number = {2},
pages = {505-523},
title = {Construction of 3D {MR} image-based computer models of pathologic hearts, augmented with histology and optical fluorescence imaging to characterize action potential propagation},
url = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/MedIA_Mihaela2012.pdf},
url-hal = {https://hal.inria.fr/hal-00813859},
volume = {16},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
L. Ritacco,
Christof Seiler,
G. Farfalli,
L. Nolte,
Mauricio Reyes,
D. Muscolo,
and L. Tinao.
Validity of an Automatic Measure Protocol in Distal Femur for Allograft Selection from a Three-Dimensional Virtual Bone Bank System.
Cell and Tissue Banking,
2012.
Note: To appear.
@article{RitaccoSeiler:CTB:2012,
author = {L. Ritacco and Christof Seiler and G. Farfalli and L. Nolte and Mauricio Reyes and D. Muscolo and L. Tinao},
journal = {Cell and Tissue Banking},
note = {to appear},
title = {Validity of an Automatic Measure Protocol in Distal Femur for Allograft Selection from a Three-Dimensional Virtual Bone Bank System},
url = {https://www-sop.inria.fr/asclepios/Publications/Christof.Seiler/RitaccoSeilerCTB2012.pdf},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
Roberta Rossi,
Michela Pievani,
Marco Lorenzi,
Marina Boccardi,
Rossella Beneduce,
Stefano Bignotti,
Genoveffa Borsci,
Maria Cotelli,
Panteleimon Giannakopoulos,
Laura R. Magni,
Luciana Rillosi,
Sandra Rosini,
Giuseppe Rossi,
and Giovanni B. Frisoni.
Structural brain features of borderline personality and bipolar disorders.
Psychiatry Research: Neuroimaging,
12:S0925-4927,
2012.
@article{Lorenzi:PSY:2012,
author = { Roberta Rossi and Michela Pievani and Marco Lorenzi and Marina Boccardi and Rossella Beneduce and Stefano Bignotti and Genoveffa Borsci and Maria Cotelli and Panteleimon Giannakopoulos and {Laura R.} Magni and Luciana Rillosi and Sandra Rosini and Giuseppe Rossi and {Giovanni B.} Frisoni},
journal = {Psychiatry Research: Neuroimaging},
pages = {S0925-4927},
title = {Structural brain features of borderline personality and bipolar disorders},
url = {https://www-sop.inria.fr/asclepios/Publications/Marco.Lorenzi/Lorenzi-PSY-2012.pdf},
url-hal = {https://hal.inria.fr/hal-00809081},
volume = {12},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {IT},
x-proceedings = {no},
year = {2012}
}
-
Christof Seiler,
A. Gazdhar,
Mauricio Reyes,
L.M. Benneker,
T. Geiser,
K.A. Siebenrock,
and B. Gantenbein-Ritter.
Time-Lapse Microscopy and Classification of 2D Human Mesenchymal Stem Cells Based on Cell Shape Picks Up Myogenic from Osteogenic and Adipogenic Differentiation.
Journal of Tissue Engineering and Regenerative Medicine,
2012.
Note: To appear.
@article{Seiler:TERM:2012,
author = {Christof Seiler and A. Gazdhar and Mauricio Reyes and L.M. Benneker and T. Geiser and K.A. Siebenrock and B. Gantenbein-Ritter},
journal = {Journal of Tissue Engineering and Regenerative Medicine},
note = {to appear},
title = {Time-Lapse Microscopy and Classification of 2D Human Mesenchymal Stem Cells Based on Cell Shape Picks Up Myogenic from Osteogenic and Adipogenic Differentiation},
url = {https://www-sop.inria.fr/asclepios/Publications/Christof.Seiler/SeilerTERM2012.pdf},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
Christof Seiler,
Xavier Pennec,
and Mauricio Reyes.
Capturing the Multiscale Anatomical Shape Variability with Polyaffine Transformation Trees.
Medical Image Analysis (MedIA),
16(7):1371-1384,
2012.
@article{Seiler:MEDIA:2012,
author = {Christof Seiler and Xavier Pennec and Mauricio Reyes},
doi = {10.1016/j.media.2012.05.011},
journal = {Medical Image Analysis (MedIA)},
number = {7},
pages = {1371-1384},
title = {Capturing the Multiscale Anatomical Shape Variability with Polyaffine Transformation Trees},
url = {https://www-sop.inria.fr/asclepios/Publications/Christof.Seiler/SeilerPolyaffineTransformationTreesMedIA2012.pdf},
url-hal = {https://hal.inria.fr/hal-00813866},
volume = {16},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {CH},
x-proceedings = {no},
year = {2012}
}
-
Maxime Sermesant,
R. Chabiniok,
P. Chinchapatnam,
Tommaso Mansi,
F. Billet,
P. Moireau,
Jean-Marc Peyrat,
Ken C. L. Wong,
Jatin Relan,
Kawal Rhode,
M. Ginks,
P. Lambiase,
Hervé Delingette,
M. Sorine,
C. Aldo Rinaldi,
D. Chapelle,
Reza Razavi,
and Nicholas Ayache.
Patient-specific electromechanical models of the heart for the prediction of pacing acute effects in CRT: A preliminary clinical validation.
Medical Image Analysis,
16(1):201-215,
2012.
@article{Sermesant:MEDIA:2012,
author = {Maxime Sermesant and R. Chabiniok and P. Chinchapatnam and Tommaso Mansi and F. Billet and P. Moireau and Jean-Marc Peyrat and Ken C. L. Wong and Jatin Relan and Kawal Rhode and M. Ginks and P. Lambiase and Herv\'e Delingette and M. Sorine and {C. Aldo} Rinaldi and D. Chapelle and Reza Razavi and Nicholas Ayache},
hal-identifiant = {inria-00616191},
journal = {Medical Image Analysis},
number = {1},
pages = {201-215},
title = {Patient-specific electromechanical models of the heart for the prediction of pacing acute effects in {CRT}: A preliminary clinical validation},
url = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/MedIAsermesant2011.pdf},
url-hal = {http://hal.inria.fr/inria-00616191/en/},
volume = {16},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
Juliette Thariat,
Pierre-Yves Marcy,
A. Lacout,
Liliane Ramus,
T. Girinsky,
Y. Pointreau,
and Grégoire Malandain.
Radiotherapy and radiology: joint efforts for modern radiation planning and practice.
Diagn Interv Imaging,
93(5):342-50,
May 2012.
Abstract: |
With new irradiation techniques, the dose can be better matched to the contours of the tumour. The corollary is that greater precision is required. Recent intercomparison studies of treatment plans have emphasized the need to harmonise contouring practices. More of a consensus approach is based on using adaptive imaging modalities, expert group recommendations and automatic segmentation atlases, on harmonisation of dosimetric decisions through employing exhaustive nomograms for organs at risk, and on indexes for choosing optimal treatment plans. On another level, quality assurance and data pooling programmes have been set up, making use of DICOM-RT data transfer (image networks). The combination of several irradiation techniques (for example, intensity-modulated conformal radiation therapy plus CyberKnife((R)) boost and re-irradiation), making it possible to irradiate tumours better, requires the cumulative doses to be recorded by dose summation software. Real awareness has been achieved in recent years as regards improving the quality of treatment, pooling data and harmonising practices. |
@article{thariat:DII:2012,
abstract = {With new irradiation techniques, the dose can be better matched to the contours of the tumour. The corollary is that greater precision is required. Recent intercomparison studies of treatment plans have emphasized the need to harmonise contouring practices. More of a consensus approach is based on using adaptive imaging modalities, expert group recommendations and automatic segmentation atlases, on harmonisation of dosimetric decisions through employing exhaustive nomograms for organs at risk, and on indexes for choosing optimal treatment plans. On another level, quality assurance and data pooling programmes have been set up, making use of DICOM-RT data transfer (image networks). The combination of several irradiation techniques (for example, intensity-modulated conformal radiation therapy plus CyberKnife((R)) boost and re-irradiation), making it possible to irradiate tumours better, requires the cumulative doses to be recorded by dose summation software. Real awareness has been achieved in recent years as regards improving the quality of treatment, pooling data and harmonising practices.},
author = {Juliette Thariat and Pierre-Yves Marcy and A. Lacout and Liliane Ramus and T. Girinsky and Y. Pointreau and Gr\'egoire Malandain},
journal = {Diagn Interv Imaging},
month = {May},
number = {5},
pages = {342-50},
title = {Radiotherapy and radiology: joint efforts for modern radiation planning and practice},
url-hal = {https://hal.inria.fr/hal-00813871},
volume = {93},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
Juliette Thariat,
Liliane Ramus,
Philippe Maingon,
Guillaume Odin,
Vincent Gregoire,
Vincent Darcourt,
Nicolas Guevara,
Marie-Helene Orlanducci,
Serge Marcie,
Gilles Poissonnet,
Pierre-Yves Marcy,
Alex Bozec,
Olivier Dassonville,
Laurent Castillo,
Francois Demard,
Jose Santini,
and Grégoire Malandain.
DENTALMAPS: Automatic Dental Delineation for Radiotherapy Planning in Head-and-neck Cancer.
Int J Radiat Oncol Biol Phys,
82(5):1858-65,
April 2012.
Abstract: |
PURPOSE: To propose an automatic atlas-based segmentation framework of the dental structures, called Dentalmaps, and to assess its accuracy and relevance to guide dental care in the context of intensity-modulated radiotherapy. METHODS AND MATERIALS: A multi-atlas-based segmentation, less sensitive to artifacts than previously published head-and-neck segmentation methods, was used. The manual segmentations of a 21-patient database were first deformed onto the query using nonlinear registrations with the training images and then fused to estimate the consensus segmentation of the query. RESULTS: The framework was evaluated with a leave-one-out protocol. The maximum doses estimated using manual contours were considered as ground truth and compared with the maximum doses estimated using automatic contours. The dose estimation error was within 2-Gy accuracy in 75\% of cases (with a median of 0.9 Gy), whereas it was within 2-Gy accuracy in 30\% of cases only with the visual estimation method without any contour, which is the routine practice procedure. CONCLUSIONS: Dose estimates using this framework were more accurate than visual estimates without dental contour. Dentalmaps represents a useful documentation and communication tool between radiation oncologists and dentists in routine practice. Prospective multicenter assessment is underway on patients extrinsic to the database. |
@article{thariat-ramus:ijrobp:2012,
abstract = {PURPOSE: To propose an automatic atlas-based segmentation framework of the dental structures, called Dentalmaps, and to assess its accuracy and relevance to guide dental care in the context of intensity-modulated radiotherapy. METHODS AND MATERIALS: A multi-atlas-based segmentation, less sensitive to artifacts than previously published head-and-neck segmentation methods, was used. The manual segmentations of a 21-patient database were first deformed onto the query using nonlinear registrations with the training images and then fused to estimate the consensus segmentation of the query. RESULTS: The framework was evaluated with a leave-one-out protocol. The maximum doses estimated using manual contours were considered as ground truth and compared with the maximum doses estimated using automatic contours. The dose estimation error was within 2-Gy accuracy in 75\% of cases (with a median of 0.9 Gy), whereas it was within 2-Gy accuracy in 30\% of cases only with the visual estimation method without any contour, which is the routine practice procedure. CONCLUSIONS: Dose estimates using this framework were more accurate than visual estimates without dental contour. Dentalmaps represents a useful documentation and communication tool between radiation oncologists and dentists in routine practice. Prospective multicenter assessment is underway on patients extrinsic to the database.},
author = {Juliette Thariat and Liliane Ramus and Philippe Maingon and Guillaume Odin and Vincent Gregoire and Vincent Darcourt and Nicolas Guevara and Marie-Helene Orlanducci and Serge Marcie and Gilles Poissonnet and Pierre-Yves Marcy and Alex Bozec and Olivier Dassonville and Laurent Castillo and Francois Demard and Jose Santini and Gr\'egoire Malandain},
hal-identifiant = {inria-00616186},
journal = {Int J Radiat Oncol Biol Phys},
month = {April},
number = {5},
pages = {1858-65},
title = {DENTALMAPS: Automatic Dental Delineation for Radiotherapy Planning in Head-and-neck Cancer},
url = {https://www-sop.inria.fr/asclepios/Publications/Liliane.Ramus/thariat-ramus_IJROBP_2011.pdf},
url-hal = {http://hal.inria.fr/inria-00616186/en/},
volume = {82},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
Florian Vichot,
H. Cochet,
Benoit Bleuzé,
Nicolas Toussaint,
P. Jaïs,
and Maxime Sermesant.
Cardiac Interventional Guidance using Multimodal Data Processing and Visualisation: medInria as an Interoperability Platform.
Midas Journal,
2012.
Keyword(s): Standards,
Data Formats,
Registration,
Visualisation.
Abstract: |
medInria is a free medical imaging software developed at Inria, which aims at providing clinicians with state-of-the-art algorithms dedicated to medical image processing and visualization. Efforts have been made to simplify the user interface, while keeping high-level algorithms. In this particular article, we will concentrate on its use in preoperative preparation for cardiac interventions, and how we handle the difficulties arising from the lack of standard format for data types such as meshes or fibers, the absence of a common programming interface for data processing algorithms, notably registration, and the issues of visualisation where display conventions would be beneficial. |
@article{Vichot2012,
abstract = {medInria is a free medical imaging software developed at Inria, which aims at providing clinicians with state-of-the-art algorithms dedicated to medical image processing and visualization. Efforts have been made to simplify the user interface, while keeping high-level algorithms. In this particular article, we will concentrate on its use in preoperative preparation for cardiac interventions, and how we handle the difficulties arising from the lack of standard format for data types such as meshes or fibers, the absence of a common programming interface for data processing algorithms, notably registration, and the issues of visualisation where display conventions would be beneficial.},
author = {Florian Vichot and H. Cochet and Benoit Bleuz\'e and Nicolas Toussaint and P. Ja\"is and Maxime Sermesant},
howpublished = {\url{http://hdl.handle.net/10380/3361}},
institution = {INRIA},
journal = {Midas Journal},
keywords = {Standards, Data Formats, Registration, Visualisation},
title = {Cardiac Interventional Guidance using Multimodal Data Processing and Visualisation: medInria as an Interoperability Platform},
url = {http://www.midasjournal.org/download/pdf/19873/IJ_863_2_medInriaInteroperabilityPlatform.pdf},
url-hal = {https://hal.inria.fr/hal-00813873},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
year = {2012}
}
-
François Faure,
Christian Duriez,
Hervé Delingette,
Jérémie Allard,
Benjamin Gilles,
Stéphanie Marchesseau,
Hugo Talbot,
Hadrien Courtecuisse,
Guillaume Bousquet,
Igor Peterlik,
and Stéphane Cotin.
SOFA: A Multi-Model Framework for Interactive Physical Simulation.
In Yohan Payan, editor, Soft Tissue Biomechanical Modeling for Computer Assisted Surgery.
Springer,
June 2012.
HAL ID: hal-00681539.
@incollection{faure2012sofa,
author = {Faure, Fran{\c c}ois and Duriez, Christian and Herv\'e Delingette and J\'er\'emie Allard and Gilles, Benjamin and St\'ephanie Marchesseau and Talbot, Hugo and Courtecuisse, Hadrien and Bousquet, Guillaume and Peterlik, Igor and Cotin, St{\'e}phane},
booktitle = {{Soft Tissue Biomechanical Modeling for Computer Assisted Surgery}},
doi = {10.1007/8415\_2012\_125},
editor = {Yohan Payan},
month = {June},
publisher = {Springer},
title = {{SOFA: A Multi-Model Framework for Interactive Physical Simulation}},
url-hal = {http://hal.inria.fr/hal-00681539},
x-editorial-board = {yes},
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x-proceedings = {no},
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-
Xavier Pennec and Vincent Arsigny.
Exponential Barycenters of the Canonical Cartan Connection and Invariant Means on Lie Groups.
In Frederic Barbaresco,
Amit Mishra,
and Frank Nielsen, editors, Matrix Information Geometry,
pages 123-166.
Springer,
May 2012.
ISBN: 978-3-642-30231-2.
HAL ID: hal-00699361.
Abstract: |
When performing statistics on elements of sets that possess a particular geometric structure, it is desirable to respect this structure. For instance in a Lie group, it would be judicious to have a notion of a mean which is stable by the group operations (composition and inversion). Such a property is ensured for Riemannian center of mass in Lie groups endowed with a bi-invariant Riemannian metric, like compact Lie groups (e.g. rotations). However, bi-invariant Riemannian metrics do not exist for most non compact and non-commutative Lie groups. This is the case in particular for rigid-body transformations in any dimension greater than one, which form the most simple Lie group involved in biomedical image registration. In this paper, we propose to replace the Riemannian metric by an affine connection structure on the group. We show that the canonical Cartan connections of a connected Lie group provides group geodesics which are completely consistent with the composition and inversion. With such a non-metric structure, the mean cannot be defined by minimizing the variance as in Riemannian Manifolds. However, the characterization of the mean as an exponential barycenter gives us an implicit definition of the mean using a general barycentric equation. Thanks to the properties of the canonical Cartan connection, this mean is naturally bi-invariant. We show the local existence and uniqueness of the invariant mean when the dispersion of the data is small enough. We also propose an iterative fixed point algorithm and demonstrate that the convergence to the invariant mean is at least linear. In the case of rigid-body transformations, we give a simple criterion for the global existence and uniqueness of the bi-invariant mean, which happens to be the same as for rotations. We also give closed forms for the bi-invariant mean in a number of simple but instructive cases, including 2D rigid transformations. For general linear transformations, we show that the bi-invariant mean is a generalization of the (scalar) geometric mean, since the determinant of the bi-invariant mean is the geometric mean of the determinants of the data. Finally, we extend the theory to higher order moments, in particular with the covariance which can be used to define a local bi-invariant Mahalanobis distance. |
@incollection{pennec:MIG:2012,
abstract = {{When performing statistics on elements of sets that possess a particular geometric structure, it is desirable to respect this structure. For instance in a Lie group, it would be judicious to have a notion of a mean which is stable by the group operations (composition and inversion). Such a property is ensured for Riemannian center of mass in Lie groups endowed with a bi-invariant Riemannian metric, like compact Lie groups (e.g. rotations). However, bi-invariant Riemannian metrics do not exist for most non compact and non-commutative Lie groups. This is the case in particular for rigid-body transformations in any dimension greater than one, which form the most simple Lie group involved in biomedical image registration. In this paper, we propose to replace the Riemannian metric by an affine connection structure on the group. We show that the canonical Cartan connections of a connected Lie group provides group geodesics which are completely consistent with the composition and inversion. With such a non-metric structure, the mean cannot be defined by minimizing the variance as in Riemannian Manifolds. However, the characterization of the mean as an exponential barycenter gives us an implicit definition of the mean using a general barycentric equation. Thanks to the properties of the canonical Cartan connection, this mean is naturally bi-invariant. We show the local existence and uniqueness of the invariant mean when the dispersion of the data is small enough. We also propose an iterative fixed point algorithm and demonstrate that the convergence to the invariant mean is at least linear. In the case of rigid-body transformations, we give a simple criterion for the global existence and uniqueness of the bi-invariant mean, which happens to be the same as for rotations. We also give closed forms for the bi-invariant mean in a number of simple but instructive cases, including 2D rigid transformations. For general linear transformations, we show that the bi-invariant mean is a generalization of the (scalar) geometric mean, since the determinant of the bi-invariant mean is the geometric mean of the determinants of the data. Finally, we extend the theory to higher order moments, in particular with the covariance which can be used to define a local bi-invariant Mahalanobis distance.}},
affiliation = {ASCLEPIOS - INRIA Sophia Antipolis},
audience = {internationale },
author = {Xavier Pennec and Vincent Arsigny},
booktitle = {{Matrix Information Geometry}},
doi = {10.1007/978-3-642-30232-9_7},
editor = {Frederic Barbaresco and Amit Mishra and Frank Nielsen },
hal_id = {hal-00699361},
isbn = {978-3-642-30231-2 },
language = {Anglais},
month = {May},
pages = {123-166},
publisher = {Springer},
title = {{Exponential Barycenters of the Canonical Cartan Connection and Invariant Means on Lie Groups}},
url = {http://hal.inria.fr/hal-00699361/PDF/Bi-Invar-Means.pdf},
url-hal = {https://hal.inria.fr/hal-00699361},
x-editorial-board = {yes},
x-id-hal = {hal-00699361},
x-international-audience = {yes},
x-proceedings = {no},
year = {2012}
}
-
H. Bou-Sleiman,
Christof Seiler,
T. Iizuka,
L. Nolte,
and Mauricio Reyes.
Population-Based Design of Mandibular Plates Based on Bone Quality and Morphology.
In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI),
volume 7510 of LNCS,
pages 66-73,
October 2012.
Springer, Heidelberg.
@inproceedings{BouSleimanSeiler:MICCAI:12,
author = {H. Bou-Sleiman and Christof Seiler and T. Iizuka and L. Nolte and Mauricio Reyes},
booktitle = {Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI)},
month = {October},
pages = {66--73},
publisher = {Springer, Heidelberg},
series = {LNCS},
title = {Population-Based Design of Mandibular Plates Based on Bone Quality and Morphology},
url-hal = {https://hal.inria.fr/hal-00813819},
volume = {7510},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {CH},
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}
-
Mathieu De Craene,
Pascal Allain,
Hang Gao,
Adityo Prakosa,
Stéphanie Marchesseau,
Loic Hilpert,
Oudom Somphone,
Hervé Delingette,
Sherif Makram-Ebeid,
Nicolas Villain,
Jan D'hooge,
Maxime Sermesant,
and Eric Saloux.
Synthetic and Phantom Setups for the Second cardiac Motion Analysis Challenge (cMAC2).
In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenge (STACOM12),
LNCS,
2012.
Springer.
@inproceedings{DeCraene:cMAC2,
adress = {Nice,China},
author = {Mathieu {De Craene} and Pascal Allain and Hang Gao and Adityo Prakosa and St\'ephanie Marchesseau and Loic Hilpert and Oudom Somphone and Herv\'e Delingette and Sherif Makram-Ebeid and Nicolas Villain and Jan D'hooge and Maxime Sermesant and Eric Saloux},
booktitle = {Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenge (STACOM12)},
publisher = {Springer},
series = {LNCS},
title = {{Synthetic and Phantom Setups for the Second cardiac Motion Analysis Challenge (cMAC2)}},
x-editorial-board = {yes},
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year = {2012}
}
-
Nicolas Duchateau,
Mathieu De Craene,
Xavier Pennec,
Beatriz Merino,
Marta Sitges,
and Bart Bijnens.
Which Reorientation Framework for the Atlas-Based Comparison of Motion from Cardiac Image Sequences?.
In Proc. of STIA 2012 (Spatio-=Temporal Image Analysis for Longitudinal and Time-Series Image Data,
volume 7570 of LNCS,
pages 25-37,
October 2012.
Springer, Heidelberg.
@inproceedings{Duchateau:STIA:12,
author = {Nicolas Duchateau and Mathieu {De Craene} and Xavier Pennec and Beatriz Merino and Marta Sitges and Bart Bijnens},
booktitle = {Proc. of STIA 2012 (Spatio-=Temporal Image Analysis for Longitudinal and Time-Series Image Data},
doi = {10.1007/978-3-642-33555-6\_3},
month = {October},
pages = {25-37},
publisher = {Springer, Heidelberg},
series = {LNCS},
title = {Which Reorientation Framework for the Atlas-Based Comparison of Motion from Cardiac Image Sequences?},
url-hal = {https://hal.inria.fr/hal-00813822},
volume = {7570},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {SP},
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year = {2012}
}
-
Ezequiel Geremia,
Bjoern H. Menze,
and Nicholas Ayache.
Spatial Decision Forests for Glioma Segmentation in Multi-Channel MR Images.
In MICCAI Challenge on Multimodal Brain Tumor Segmentation,
LNCS,
October 2012.
Springer.
@inproceedings{Geremia:BRATS:12,
author = {Ezequiel Geremia and Bjoern H. Menze and Nicholas Ayache},
booktitle = {MICCAI Challenge on Multimodal Brain Tumor Segmentation},
month = {October},
publisher = {Springer},
series = {LNCS},
title = {Spatial Decision Forests for Glioma Segmentation in Multi-Channel {MR} Images},
url = {https://www-sop.inria.fr/asclepios/Publications/Ezequiel.Geremia/Geremia-BRATS-2012.pdf},
url-hal = {https://hal.inria.fr/hal-00813827},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
year = {2012}
}
-
Ezequiel Geremia,
Bjoern H. Menze,
Marcel Prastawa,
Marc-André Weber,
Antonio Criminisi,
and Nicholas Ayache.
Brain tumor cell density estimation from multi-modal MR images based on a synthetic tumor growth model.
In MICCAI Workshop on Medical Computer Vision,
LNCS,
October 2012.
Springer.
@inproceedings{Geremia:MCV:12,
author = {Ezequiel Geremia and Bjoern H. Menze and Marcel Prastawa and Marc-Andr\'e Weber and Antonio Criminisi and Nicholas Ayache},
booktitle = {MICCAI Workshop on Medical Computer Vision},
month = {October},
publisher = {Springer},
series = {LNCS},
title = {Brain tumor cell density estimation from multi-modal {MR} images based on a synthetic tumor growth model},
url = {https://www-sop.inria.fr/asclepios/Publications/Ezequiel.Geremia/Geremia-MCV-2012.pdf},
url-hal = {https://hal.inria.fr/hal-00813828},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
year = {2012}
}
-
Loic Le Folgoc,
Hervé Delingette,
Antonio Criminisi,
and Nicholas Ayache.
Current-based 4D shape analysis for the mechanical personalization of heart models.
In Proceedings of MCV Workshop at MICCAI 2012,
LNCS,
October 2012.
Springer.
@inproceedings{Le_Folgoc:MCV:12,
author = {Loic {Le Folgoc} and Herv\'e Delingette and Antonio Criminisi and Nicholas Ayache},
booktitle = {Proceedings of MCV Workshop at MICCAI 2012},
hal-identifiant = {hal-00746740},
month = {October},
publisher = {Springer},
series = {LNCS},
title = {Current-based 4D shape analysis for the mechanical personalization of heart models},
url = {https://www-sop.inria.fr/asclepios/Publications/Loic.Le_Folgoc/LL_MCV2012.pdf},
url-hal = {https://hal.inria.fr/hal-00746740},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
year = {2012}
}
-
Hervé Lombaert,
Leo Grady,
Xavier Pennec,
Nicholas Ayache,
and Farida Cheriet.
Spectral Demons - Image Registration via Global Spectral Correspondence.
In Proc. of ECCV (2),
number 7573 of LNCS,
pages 30-44,
2012.
@inproceedings{Lombaert:ECCV:12,
author = {Herv\'e Lombaert and Leo Grady and Xavier Pennec and Nicholas Ayache and Farida Cheriet},
booktitle = {Proc. of ECCV (2)},
doi = {10.1007/978-3-642-33709-3\_3},
number = {7573},
pages = {30-44},
series = {LNCS},
title = {Spectral Demons - Image Registration via Global Spectral Correspondence},
url-hal = {https://hal.inria.fr/hal-00813833},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {US},
x-proceedings = {yes},
year = {2012}
}
-
Hervé Lombaert,
Leo Grady,
Xavier Pennec,
Jean-Marc Peyrat,
Nicholas Ayache,
and Farida Cheriet.
Groupwise Spectral Log-Demons Framework for Atlas Construction.
In Medical Computer Vision (MCV'12) MICCAI workshop,
2012.
Note: Best paper award.
@inproceedings{Lombaert:MCV:12,
author = {Herv\'e Lombaert and Leo Grady and Xavier Pennec and Jean-Marc Peyrat and Nicholas Ayache and Farida Cheriet},
booktitle = {Medical Computer Vision (MCV'12) MICCAI workshop},
note = {Best paper award},
title = {Groupwise Spectral Log-Demons Framework for Atlas Construction},
url = {http://step.polymtl.ca/~rv101/ECCV-Spectral-Demons.pdf},
url-hal = {https://hal.inria.fr/hal-00813834},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {US},
x-proceedings = {yes},
year = {2012}
}
-
Marco Lorenzi,
Nicholas Ayache,
and Xavier Pennec.
Disentangling the normal aging from the pathological Alzheimer's disease progression on cross-sectional structural MR images.
In MICCAI workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders (NIBAD'12),
pages 145-154,
October 2012.
ISBN: 9781479261994.
@inproceedings{Lorenzi:NIBAD:12,
author = {Marco Lorenzi and Nicholas Ayache and Xavier Pennec},
booktitle = {MICCAI workshop on Novel Imaging Biomarkers for {A}lzheimer's Disease and Related Disorders (NIBAD'12)},
isbn = {9781479261994},
month = {October},
pages = {145-154},
title = {Disentangling the normal aging from the pathological Alzheimer's disease progression on cross-sectional structural MR images},
url = {https://www-sop.inria.fr/asclepios/Publications/Marco.Lorenzi/Lorenzi-NIBAD2012.pdf},
url-hal = {https://hal.inria.fr/hal-00813836},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {IT},
x-proceedings = {yes},
year = {2012}
}
-
Marco Lorenzi,
Nicholas Ayache,
and Xavier Pennec.
Regional flux analysis of longitudinal atrophy in Alzheimer's disease.
In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI),
volume 7510 of LNCS,
pages 739-746,
October 2012.
Springer, Heidelberg.
ISBN: 978-3-642-33414-6.
@inproceedings{Lorenzi:MICCAI:12,
author = {Marco Lorenzi and Nicholas Ayache and Xavier Pennec},
booktitle = {Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI)},
doi = {10.1007/978-3-642-33415-3\_91},
isbn = {978-3-642-33414-6},
month = {Oct},
pages = {739--746},
publisher = {Springer, Heidelberg},
series = {LNCS},
title = {Regional flux analysis of longitudinal atrophy in {A}lzheimer's disease },
url = {https://www-sop.inria.fr/asclepios/Publications/Marco.Lorenzi/RegionalFluxAnalysis.pdf},
url-hal = {https://hal.inria.fr/hal-00813837},
volume = {7510},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {IT},
x-proceedings = {yes},
year = {2012}
}
-
Marco Lorenzi,
Giovanni B. Frisoni,
Nicholas Ayache,
and Xavier Pennec.
Probabilistic Flux Analysis of Cerebral Longitudinal Atrophy.
In MICCAI workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders (NIBAD'12),
pages 256-265,
October 2012.
ISBN: 9781479261994.
@inproceedings{Lorenzi:NIBAD-ch:12,
author = {Marco Lorenzi and Giovanni B. Frisoni and Nicholas Ayache and Xavier Pennec},
booktitle = {MICCAI workshop on Novel Imaging Biomarkers for {A}lzheimer's Disease and Related Disorders (NIBAD'12)},
isbn = {9781479261994},
month = {October},
pages = {256-265},
title = {Probabilistic Flux Analysis of Cerebral Longitudinal Atrophy},
url-hal = {https://hal.inria.fr/hal-00813846},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {IT},
x-proceedings = {yes},
year = {2012}
}
-
Stéphanie Marchesseau,
Hervé Delingette,
Maxime Sermesant,
Kawal Rhode,
S.G. Duckett,
C. Aldo Rinaldi,
Reza Razavi,
and Nicholas Ayache.
Cardiac Mechanical Parameter Calibration based on the Unscented Transform.
In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI),
volume 7511 of LNCS,
October 2012.
Springer, Heidelberg.
@inproceedings{Marchesseau:MICCAI:2012,
author = {St\'ephanie Marchesseau and Herv\'e Delingette and Maxime Sermesant and Kawal Rhode and S.G. Duckett and {C. Aldo} Rinaldi and Reza Razavi and Nicholas Ayache},
booktitle = {Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI)},
month = {October},
publisher = {Springer, Heidelberg},
series = {LNCS},
title = {Cardiac Mechanical Parameter Calibration based on the Unscented Transform},
url = {https://www-sop.inria.fr/asclepios/Publications/Stephanie.Marchesseau/MICCAI-2012-Marchesseau.pdf},
url-hal = {https://hal.inria.fr/hal-00813848},
volume = {7511},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
year = {2012}
}
-
Kristin McLeod,
Adityo Prakosa,
Tommaso Mansi,
Maxime Sermesant,
and Xavier Pennec.
An Incompressible Log-Domain Demons Algorithm for Tracking Heart Tissue.
In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM11),
number 7085 of LNCS,
Toronto,
pages 55-67,
September 2012.
Springer.
@inproceedings{McLeod:STACOM:2011,
address = {Toronto},
author = {Kristin McLeod and Adityo Prakosa and Tommaso Mansi and Maxime Sermesant and Xavier Pennec},
booktitle = {Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM11)},
doi = {10.1007/978-3-642-28326-0\_6},
month = {September},
number = {7085},
pages = {55-67},
publisher = {Springer},
series = {LNCS},
title = {An Incompressible Log-Domain Demons Algorithm for Tracking Heart Tissue},
url = {https://www-sop.inria.fr/asclepios/Publications/Kristin.McLeod/iLogDemons.pdf},
url-hal = {https://hal.inria.fr/hal-00813851},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
year = {2012}
}
-
Kristin McLeod,
Christof Seiler,
Maxime Sermesant,
and Xavier Pennec.
A Near-Incompressible Poly-Affine Motion Model for Cardiac Function Analysis.
In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function + a Cardiac Electrophysiological Simulation Challenge (STACOM+CESC'12),
LNCS,
Nice,
October 2012.
Springer.
@inproceedings{MCLEOD:STACOM:2012,
address = {Nice},
author = {Kristin McLeod and Christof Seiler and Maxime Sermesant and Xavier Pennec},
booktitle = {Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function + a Cardiac Electrophysiological Simulation Challenge (STACOM+CESC'12)},
month = {October},
publisher = {Springer},
series = {LNCS},
title = {A Near-Incompressible Poly-Affine Motion Model for Cardiac Function Analysis},
url = {https://www-sop.inria.fr/asclepios/Publications/Kristin.McLeod/PolyAffineHeart.pdf},
url-hal = {https://hal.inria.fr/hal-00813852},
x-editorial-board = {yes},
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x-proceedings = {yes},
year = {2012}
}
-
Adityo Prakosa,
Kristin McLeod,
Maxime Sermesant,
and Xavier Pennec.
Evaluation of iLogDemons Algorithm for Cardiac Motion Tracking in Synthetic Ultrasound Sequence.
In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenge (STACOM12),
LNCS,
October 2012.
Springer.
@inproceedings{Prakosa:STACOM:12,
author = {Adityo Prakosa and Kristin McLeod and Maxime Sermesant and Xavier Pennec},
booktitle = {Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenge (STACOM12)},
month = {October},
publisher = {Springer},
series = {LNCS},
title = {Evaluation of iLogDemons Algorithm for Cardiac Motion Tracking in Synthetic Ultrasound Sequence},
url = {https://www-sop.inria.fr/asclepios/Publications/Adityo.Prakosa/PrakosaSTACOM12.pdf},
url-hal = {https://hal.inria.fr/hal-00813860},
x-editorial-board = {yes},
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x-proceedings = {yes},
year = {2012}
}
-
Nicolas Savoire,
Barbara André,
and Tom Vercauteren.
Online Blind Calibration of Non-Uniform Photodetectors: Application to Endomicroscopy.
In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI),
LNCS,
October 2012.
Springer, Heidelberg.
Note: To appear.
@inproceedings{Andre:MICCAI:12,
author = {Nicolas Savoire and Barbara Andr\'e and Tom Vercauteren},
booktitle = {Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI)},
month = {October},
note = {To appear},
publisher = {Springer, Heidelberg},
series = {LNCS},
title = {Online Blind Calibration of Non-Uniform Photodetectors: Application to Endomicroscopy},
url = {https://www-sop.inria.fr/asclepios/Publications/Barbara.Andre/MICCAI-2012-SavoireAndreVercauteren.pdf},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
year = {2012}
}
-
Christof Seiler,
Xavier Pennec,
and Mauricio Reyes.
Simultaneous Multiscale Polyaffine Registration by Incorporating Deformation Statistics.
In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI),
volume 7511 of LNCS,
pages 130-137,
October 2012.
Springer, Heidelberg.
ISBN: 978-3-642-33417-7.
@inproceedings{Seiler:MICCAI:12,
author = {Christof Seiler and Xavier Pennec and Mauricio Reyes},
booktitle = {Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI)},
doi = {10.1007/978-3-642-33418-4\_17},
isbn = {978-3-642-33417-7},
month = {oct},
pages = {130--137},
publisher = {Springer, Heidelberg},
series = {LNCS},
title = {Simultaneous Multiscale Polyaffine Registration by Incorporating Deformation Statistics},
url = {https://www-sop.inria.fr/asclepios/Publications/Christof.Seiler/SeilerMultiscaleGroupwisePolyaffineRegistrationMICCAI2012.pdf},
url-hal = {https://hal.inria.fr/hal-00813867},
volume = {7511},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {CH},
x-proceedings = {yes},
year = {2012}
}
-
Stefan Sommer,
Mads Nielsen,
and Xavier Pennec.
Sparsity and Scale: Compact Representations of Deformation for Diffeomorphic Registration.
In IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2012),
Breckenridge, Colorado, USA,
January 2012.
Abstract: |
In order to detect small-scale deformations during disease propagation while allowing large-scale deformation needed for inter-subject registration, we wish to model deformation at multiple scales and represent the deformation at the relevant scales only. With the LDDMM registration framework, enforcing sparsity results in compact representations but with limited ability to represent deformation across scales. In contrast, the LDDKBM extension of LDDMM allows representations of deformation at multiple scales but it does not favour compactness and hence may represent deformation at more scales than necessary. In this paper, we combine a sparsity prior with the multi-scale framework resulting in an algorithm allowing compact representation of deformation across scales. We present a mathematical formulation of the algorithm and evaluate it on a dataset of annotated lung CT images. |
@inproceedings{Sommer:MMBIA:2012,
abstract = {{In order to detect small-scale deformations during disease propagation while allowing large-scale deformation needed for inter-subject registration, we wish to model deformation at multiple scales and represent the deformation at the relevant scales only. With the LDDMM registration framework, enforcing sparsity results in compact representations but with limited ability to represent deformation across scales. In contrast, the LDDKBM extension of LDDMM allows representations of deformation at multiple scales but it does not favour compactness and hence may represent deformation at more scales than necessary. In this paper, we combine a sparsity prior with the multi-scale framework resulting in an algorithm allowing compact representation of deformation across scales. We present a mathematical formulation of the algorithm and evaluate it on a dataset of annotated lung CT images.}},
address = {Breckenridge, Colorado, USA},
affiliation = {Department of computer Science [Copenhagen] - DIKU - University of Copenhagen - ASCLEPIOS - INRIA Sophia Antipolis - INRIA},
author = {Stefan Sommer and Mads Nielsen and Xavier Pennec},
booktitle = {{IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2012)}},
hal-identifiant = {hal-00641357},
hal_id = {hal-00641357},
month = {Jan},
title = {{Sparsity and Scale: Compact Representations of Deformation for Diffeomorphic Registration}},
url = { http://hal.inria.fr/hal-00641357/PDF/Sommer.mmbia12.pdf },
url-hal = {https://hal.inria.fr/hal-00641357},
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}
-
Erin Stretton,
Emmanuel Mandonnet,
Ezequiel Geremia,
Bjoern H. Menze,
Hervé Delingette,
and Nicholas Ayache.
Predicting the Location of Glioma Recurrence After a Resection Surgery.
In Proceedings of 2nd International MICCAI Workshop on Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data (STIA'12),
LNCS,
Nice,
October 2012.
Springer.
@inproceedings{Stretton:STIA:2012,
address = {Nice},
author = {Erin Stretton and Emmanuel Mandonnet and Ezequiel Geremia and Bjoern H. Menze and Herv\'e Delingette and Nicholas Ayache},
booktitle = {Proceedings of 2nd International MICCAI Workshop on Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data (STIA'12)},
month = {October},
publisher = {Springer},
series = {LNCS},
title = {Predicting the Location of Glioma Recurrence After a Resection Surgery},
url = {https://www-sop.inria.fr/asclepios/Publications/Erin.Stretton/Miccai2012_Workshop_ErinStretton-Submit.pdf},
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x-pays = {ES},
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}
-
Hugo Talbot,
Christian Duriez,
Hadrien Courtecuisse,
Jatin Relan,
Maxime Sermesant,
Stéphane Cotin,
and Hervé Delingette.
Towards Real-Time Computation of Cardiac Electrophysiology for Training Simulator.
In Statistical Atlases and Computational Models of the Heart - STACOM 2012 in the 15th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2012,
Lecture Notes in Computer Science,
Nice, France,
October 2012.
Springer.
@inproceedings{talbot:hal-00750835,
address = {Nice, France},
affiliation = {SHACRA - INRIA Lille - Nord Europe / INRIA Nancy - Grand Est / LIFL , ASCLEPIOS - INRIA Sophia Antipolis},
audience = {international },
author = {Hugo Talbot and Christian Duriez and Hadrien Courtecuisse and Jatin Relan and Maxime Sermesant and St{\'e}phane Cotin and Herv{\'e} Delingette},
booktitle = {{Statistical Atlases and Computational Models of the Heart - STACOM 2012 in the 15th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2012}},
hal_id = {hal-00750835},
month = {October},
publisher = {Springer},
series = {Lecture Notes in Computer Science },
title = {{Towards Real-Time Computation of Cardiac Electrophysiology for Training Simulator}},
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-
Hugo Talbot,
Stéphanie Marchesseau,
Christian Duriez,
Hadrien Courtecuisse,
Jatin Relan,
Maxime Sermesant,
Stéphane Cotin,
and Hervé Delingette.
Interactive Electromechanical Model of the Heart for Patient-Specific Therapy Planning and Training using SOFA.
In Virtual Human Project (VPH),
2012.
@inproceedings{Talbot:VPH2012,
author = {Hugo Talbot and St\'ephanie Marchesseau and Christian Duriez and Hadrien Courtecuisse and Jatin Relan and Maxime Sermesant and St\'ephane Cotin and Herv\'e Delingette},
booktitle = {Virtual Human Project (VPH)},
title = {{Interactive Electromechanical Model of the Heart for Patient-Specific Therapy Planning and Training using SOFA}},
url = {http://hal.inria.fr/docs/00/75/15/37/PDF/VPH2012.pdf},
url-hal = {https://hal.inria.fr/hal-00751537},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
year = {2012}
}
-
J. Unkelbach,
Bjoern H. Menze,
A. Motamedi,
F. Dittmann,
Ender Konukoglu,
Nicholas Ayache,
and H. Shih.
Glioblastoma growth modeling for radiotherapy target delineation..
In Proc MICCAI Workshop on Image-Guidance and Multimodal Dose Planning in Radiation Therap.,
pages 12 pages,
2012.
@inproceedings{unkelbach_12_glioblastoma,
author = {J. Unkelbach and Bjoern H. Menze and A. Motamedi and F. Dittmann and Ender Konukoglu and Nicholas Ayache and H. Shih },
booktitle = {Proc MICCAI Workshop on Image-Guidance and Multimodal Dose Planning in Radiation Therap.},
pages = {12 pages},
title = {Glioblastoma growth modeling for radiotherapy target delineation.},
url = {http://people.csail.mit.edu/menze/papers/unkelbach_12_glioblastoma.pdf},
url-hal = {https://hal.inria.fr/hal-00813872},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
year = {2012}
}
-
Ken C. L. Wong,
Jatin Relan,
Linwei Wang,
Maxime Sermesant,
Hervé Delingette,
Nicholas Ayache,
and Pengcheng Shi.
Strain-Based Regional Nonlinear Cardiac Material Properties Estimation From Medical Images.
In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI),
LNCS,
October 2012.
Springer, Heidelberg.
Note: To appear.
@inproceedings{Ken:MICCAI:12,
author = {Ken C. L. Wong and Jatin Relan and Linwei Wang and Maxime Sermesant and Herv\'e Delingette and Nicholas Ayache and Pengcheng Shi},
booktitle = {Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI)},
month = {October},
note = {To appear},
publisher = {Springer, Heidelberg},
series = {LNCS},
title = {Strain-Based Regional Nonlinear Cardiac Material Properties Estimation From Medical Images},
url = {https://www-sop.inria.fr/asclepios/Publications/Jatin.Relan/KenMICCAI2012.pdf},
url-hal = {https://hal.inria.fr/hal-00813874},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
year = {2012}
}
-
Barbara André,
Tom Vercauteren,
Anna M. Buchner,
Murli Krishna,
Nicholas Ayache,
and Michael B. Wallace.
Comparison of a Classification Software based on Image Retrieval with the Off-Line Diagnosis of Expert Endoscopists for probe-based Confocal Laser Endomicroscopy (pCLE) of Colorectal Polyps.
Gastrointestinal Endoscopy (DDW 2012),
2012.
Note: In press.
@misc{Andre:DDW:2012:1,
author = {Barbara Andr\'e and Tom Vercauteren and Anna M. Buchner and Murli Krishna and Nicholas Ayache and Michael B. Wallace},
howpublished = {Gastrointestinal Endoscopy (DDW 2012)},
note = {In press},
title = {Comparison of a Classification Software based on Image Retrieval with the Off-Line Diagnosis of Expert Endoscopists for probe-based Confocal Laser Endomicroscopy (pCLE) of Colorectal Polyps},
url = {https://www-sop.inria.fr/asclepios/Publications/Barbara.Andre/ANDRE-DDW12-Abs1-classification.pdf},
url-hal = {https://hal.inria.fr/hal-00813812},
x-international-audience = {yes},
x-pays = {US},
x-proceedings = {no},
year = {2012}
}
-
Barbara André,
Tom Vercauteren,
Anna M. Buchner,
Michael B. Wallace,
and Nicholas Ayache.
Image-based Semantic Learning Software for Automatic Detection of Discriminative Criteria used for probe-based Confocal Laser Endomicroscopy (pCLE) Diagnosis of Colorectal Polyps.
Gastrointestinal Endoscopy (DDW 2012),
2012.
Note: In press.
@misc{Andre:DDW:2012:2,
author = {Barbara Andr\'e and Tom Vercauteren and Anna M. Buchner and Michael B. Wallace and Nicholas Ayache},
howpublished = {Gastrointestinal Endoscopy (DDW 2012)},
note = {In press},
title = {Image-based Semantic Learning Software for Automatic Detection of Discriminative Criteria used for probe-based Confocal Laser Endomicroscopy (pCLE) Diagnosis of Colorectal Polyps},
url = {https://www-sop.inria.fr/asclepios/Publications/Barbara.Andre/ANDRE-DDW12-Abs2-semantic6.pdf},
url-hal = {https://hal.inria.fr/hal-00813816},
x-international-audience = {yes},
x-pays = {US},
x-proceedings = {no},
year = {2012}
}
-
Marine Breuilly,
Grégoire Malandain,
Nicholas Ayache,
Jacques Darcourt,
Thierry Pourcher,
and Philippe Franken.
Simulated breath-hold reconstruction in micro-SPECT: Application to peritoneal metastases expressing NIS as reporter gene,
2012.
@misc{Breuilly:snm:2012,
author = {Marine Breuilly and Gr\'egoire Malandain and Nicholas Ayache and Jacques Darcourt and Thierry Pourcher and Philippe Franken},
journal = {Journal of Nuclear Medicine},
number = {1},
pages = {2381},
title = {Simulated breath-hold reconstruction in micro-SPECT: Application to peritoneal metastases expressing NIS as reporter gene},
url = {http://jnumedmtg.snmjournals.org/cgi/content/meeting_abstract/53/1_MeetingAbstracts/2381},
url-hal = {https://hal.inria.fr/hal-00759929},
volume = {53},
x-editorial-board = {yes},
x-international-audience = {yes},
x-invited-conference = {no},
x-language = {EN},
x-proceedings = {yes},
year = {2012}
}
-
Marine Breuilly,
Grégoire Malandain,
Nicholas Ayache,
Philippe Franken,
Jacques Darcourt,
and Thierry Pourcher.
Simulated breath-hold reconstruction in micro-SPECT: application to peritoneal metastases expressing NIS as reporter gene.
2nd second Molecular Imaging in Biology and Oncology (MIBO) workshop (MIBO2012), Nice,
January 2012.
@misc{Breuilly:MIBO:2012,
author = {Marine Breuilly and Gr\'egoire Malandain and Nicholas Ayache and Philippe Franken and Jacques Darcourt and Thierry Pourcher},
howpublished = {2nd second Molecular Imaging in Biology and Oncology (MIBO) workshop (MIBO2012), Nice},
month = {Jan},
title = {Simulated breath-hold reconstruction in micro-SPECT: application to peritoneal metastases expressing NIS as reporter gene},
url-hal = {https://hal.inria.fr/hal-00759929},
x-editorial-board = {yes},
x-international-audience = {yes},
x-language = {UK},
x-proceedings = {no},
year = {2012}
}
-
Marine Breuilly,
Grégoire Malandain,
Jacques Darcourt,
Thierry Pourcher,
and Philippe Franken.
Prise en compte du mouvement respiratoire du petit animal pour la reconstruction 3D TEMP synchronisée : application aux métastases péritonéales,
2012.
Note: 50e colloque de Médecine Nucléaire de Langue Françcaise.
ISSN: 0928-1258.
@misc{Breuilly:mednuc:2012,
author = {Marine Breuilly and Gr\'egoire Malandain and Jacques Darcourt and Thierry Pourcher and Philippe Franken},
doi = {10.1016/j.mednuc.2012.02.108},
issn = {0928-1258},
journal = {M\'edecine Nucl\'eaire},
note = {50e colloque de M\'edecine Nucl\'eaire de Langue Fran{\c c}caise},
number = {4},
pages = {188 - 189},
title = {Prise en compte du mouvement respiratoire du petit animal pour la reconstruction 3D TEMP synchronis\'ee : application aux m\'etastases p\'eriton\'eales},
url = {http://www.sciencedirect.com/science/article/pii/S0928125812001696},
url-hal = {https://hal.inria.fr/hal-00759954},
volume = {36},
x-editorial-board = {yes},
x-international-audience = {no},
x-invited-conference = {no},
x-language = {FR},
x-proceedings = {yes},
year = {2012}
}
-
Vikash Gupta,
Nicholas Ayache,
and Xavier Pennec.
Towards higher resolution analysis of Clinical Brain Diffusion Images.
1st International Symposium on Deep Brain Connectomics, Clermon-Ferrand, France,
September 2012.
@misc{Gupta:2012,
author = {Vikash Gupta and Nicholas Ayache and Xavier Pennec},
howpublished = {1st International Symposium on Deep Brain Connectomics, Clermon-Ferrand, France},
month = {September},
title = {Towards higher resolution analysis of Clinical Brain Diffusion Images},
url = {http://www.igcnc.fr/index.php/animation/program},
url-hal = {https://hal.inria.fr/hal-00813829},
x-editorial-board = {yes},
x-international-audience = {yes},
x-invited-conference = {yes},
x-pays = {FR},
x-proceedings = {no},
year = {2012}
}
-
Marco Lorenzi,
Nicholas Ayache,
Xavier Pennec,
Giovanni B. Frisoni,
and for the Alzheimer's Disease Neuroimaging Initiative (ADNI).
Differentiating pathological brain atrophy from normal aging: a promising diagnostic tool for Alzheimer's disease.
2nd Virtual Physiological Human European Conference (VPH2012), London,
September 2012.
@misc{Lorenzi:VPH:2012,
author = {Marco Lorenzi and Nicholas Ayache and Xavier Pennec and Giovanni B. Frisoni and for the Alzheimer's Disease Neuroimaging Initiative (ADNI)},
howpublished = {2nd Virtual Physiological Human European Conference (VPH2012), London},
month = {Sep},
title = {Differentiating pathological brain atrophy from normal aging: a promising diagnostic tool for Alzheimer's disease},
url-hal = {https://hal.inria.fr/hal-00813842},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {IT},
x-proceedings = {no},
year = {2012}
}
-
Marco Lorenzi,
Nicholas Ayache,
Xavier Pennec,
Giovanni B. Frisoni,
and for the Alzheimer's Disease Neuroimaging Initiative (ADNI).
Disentangling the normal aging from the pathological Alzheimer's disease progression on structural MR images.
5th Clinical Trials in Alzheimer's Disease (CTAD'12), Monte Carlo,
October 2012.
@misc{Lorenzi:CTAD:2012,
author = {Marco Lorenzi and Nicholas Ayache and Xavier Pennec and Giovanni B. Frisoni and for the Alzheimer's Disease Neuroimaging Initiative (ADNI)},
howpublished = {5th Clinical Trials in Alzheimer's Disease (CTAD'12), Monte Carlo},
month = {Oct},
title = {Disentangling the normal aging from the pathological Alzheimer's disease progression on structural MR images},
url-hal = {https://hal.inria.fr/hal-00813844},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {IT},
x-proceedings = {no},
year = {2012}
}
-
Xavier Pennec and the MICCAI Workshops / Challenges / Tutorials Organizers.
Proceedings of the MICCAI 2012 Workshops, Challenges and Tutorials.
USB key distributed to 967 participants,
October 2012.
Note: 4080 pages.
@misc{Pennec:MICCAIWorkshopsProceedings:2012,
author = {Xavier Pennec and the {MICCAI} Workshops / Challenges / Tutorials Organizers},
howpublished = {USB key distributed to 967 participants},
month = {Oct},
note = {4080 pages},
title = {Proceedings of the {MICCAI} 2012 Workshops, Challenges and Tutorials},
url-hal = {https://hal.inria.fr/hal-00813857},
year = {2012}
}