Publications of Barbara André

1. Barbara André. Smart Atlas for Endomicroscopy Diagnosis Support: A Clinical Application of Content-Based Image Retrieval. Ph.D. Thesis, Ecole Nationale Supérieure des Mines de Paris, October 2011. [bibtex-entry]

1. Barbara André, Tom Vercauteren, Anna M. Buchner, Murli Krishna, Nicholas Ayache, and Michael B. Wallace. Software for Automated Classification of probe-based Confocal Laser Endomicroscopy Videos of Colorectal Polyps. World Journal of Gastroenterology, October 2012. [bibtex-entry]



2. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. Learning Semantic and Visual Similarity for Endomicroscopy Video Retrieval. IEEE Transactions on Medical Imaging, 31(6):1276-1288, June 2012. [bibtex-entry]



3. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. A Smart Atlas for Endomicroscopy using Automated Video Retrieval. Medical Image Analysis, 15(4):460-476, August 2011. Keyword(s): Content-Based Video Retrieval (CBVR), Endomicroscopy, Bag-of-Visual-Words (BoW), Video-mosaicing. [Abstract] [bibtex-entry]



4. Tommaso Mansi, Barbara André, Michael Lynch, Maxime Sermesant, Hervé Delingette, Younes Boudjemline, and Nicholas Ayache. Virtual Pulmonary Valve Replacement Interventions with a Personalised Cardiac Electromechanical Model. In Nadia Magnenat-Thalmann, Jian J. Zhang, and David D. Feng, editors, Recent Advances in the 3D Physiological Human, pages 201-210. Springer, November 2009. ISBN: 978-1-84882-564-2. [bibtex-entry]

1. Marzieh Kohandani Tafreshi, Virendra Joshi, Alexander Meining, Charles Lightdale, Marc Giovannini, Julien Dauguet, Nicholas Ayache, and Barbara André. Smart Atlas for Supporting the Interpretation of probe-based Confocal Laser Endomicroscopy (pCLE) of Biliary Strictures: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition. In Digestive Disease Week (DDW 2014), Chicago, United States, May 2014. [bibtex-entry]



2. Marzieh Kohandani Tafreshi, Yan-Qing Li, Rapat Pittayanon, Douglas Pleskow, Virendra Joshi, Philip Chiu, Julien Dauguet, Nicholas Ayache, and Barbara André. Smart Atlas for Supporting the Interpretation of probe-based Confocal Laser Endomicroscopy (pCLE) of Gastric Lesions: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition. In Digestive Disease Week (DDW 2014), Chicago, United States, May 2014. [bibtex-entry]



3. Marzieh Kohandani Tafreshi, Nicolas Linard, Barbara André, Nicholas Ayache, and Tom Vercauteren. Semi-automated Query Construction for Content-based Endomicroscopy Video Retrieval. In Medical Image Computing and Computer Assisted Intervention (MICCAI), Boston, United States, September 2014. Keyword(s): Microscopic imaging, Biological Imaging, Abdominal imaging, Optical imaging, Machine learning, Database retrieval and data mining, Computer vision, Minimally invasive procedure, Pathology, Intraoperative imaging, Endoscopic imaging. [bibtex-entry]



4. Marzieh Kohandani Tafreshi, Bertrand Napoléon, Anne-Isabelle Lemaistre, Marc Giovannini, Virendra Joshi, Julien Dauguet, Nicholas Ayache, and Barbara André. Smart Atlas for Supporting the Interpretation of needle-based Confocal Laser Endomicroscopy (nCLE) of Pancreatic Cysts: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition. In Digestive Disease Week (DDW 2014), Chicago, United States, May 2014. [bibtex-entry]



5. Nicolas Savoire, Barbara André, and Tom Vercauteren. Online Blind Calibration of Non-Uniform Photodetectors: Application to Endomicroscopy. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), LNCS, October 2012. Springer, Heidelberg. Note: To appear. [bibtex-entry]



6. Barbara André, Tom Vercauteren, and Nicholas Ayache. Content-Based Retrieval in Endomicroscopy: Toward an Efficient Smart Atlas for Clinical Diagnosis. In Proceedings of the MICCAI Workshop - Medical Content-based Retrieval for Clinical Decision (MCBR-CDS'11), LNCS, 2011. Springer. [bibtex-entry]



7. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. Retrieval evaluation and distance learning from perceived similarity between endomicroscopy videos. In Proceedings of Medical Image Computing and Computer Assisted Intervention (MICCAI), LNCS, pages 8p, 2011. Springer, Heidelberg. [bibtex-entry]



8. Barbara André, Tom Vercauteren, Anna M. Buchner, Muhammad Waseem Shahid, Michael B. Wallace, and Nicholas Ayache. An image retrieval approach to setup difficulty levels in training systems for endomicroscopy diagnosis. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), number 6362 of Lecture Notes in Computer Science, Beijing, China, pages 480-487, September 2010. Springer. [bibtex-entry]



9. Barbara André, Tom Vercauteren, Michael B. Wallace, Anna M. Buchner, and Nicholas Ayache. Endomicroscopic video retrieval using mosaicing and visual words. In Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), pages 1419-1422, 2010. IEEE. [bibtex-entry]



10. Barbara André, Tom Vercauteren, Aymeric Perchant, Michael B. Wallace, Anna M. Buchner, and Nicholas Ayache. Endomicroscopic image retrieval and classification using invariant visual features. In Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2009 (ISBI'09), Boston, MA, pages 346-349, August 2009. IEEE. [bibtex-entry]



11. Barbara André, Tom Vercauteren, Aymeric Perchant, Michael B. Wallace, Anna M. Buchner, and Nicholas Ayache. Introducing space and time in local feature-based endomicroscopic image retrieval. In Proceedings of the MICCAI Workshop - Medical Content-based Retrieval for Clinical Decision (MCBR-CDS'09), volume 5853 of Lecture Notes in Computer Science, pages 18-30, February 2009. Springer. [bibtex-entry]



12. Barbara André and Hervé Delingette. Versatile design of changing mesh topologies for surgery simulation. In Fourth International Symposium on BioMedical Simulation (ISBMS'08), volume 5104 of Lecture Notes in Computer Science, London, UK, pages 147-156, July 2008. Springer. [bibtex-entry]

1. Barbara André, Tom Vercauteren, M. Buchner, Anna, B. Wallace, Michael, and Nicholas Ayache. Learning Semantic and Visual Similarity for Endomicroscopy Video Retrieval. Rapport de recherche RR-7722, INRIA, August 2011. Keyword(s): probe-based Confocal Laser Endomicroscopy (pCLE), Content- Based Image Retrieval (CBIR), Bag-of-Visual-Words (BoW) method, semantic learning, similarity distance learning. [Abstract] [bibtex-entry]

1. Barbara André, Tom Vercauteren, Anna M. Buchner, Murli Krishna, Nicholas Ayache, and Michael B. Wallace. Comparison of a Classification Software based on Image Retrieval with the Off-Line Diagnosis of Expert Endoscopists for probe-based Confocal Laser Endomicroscopy (pCLE) of Colorectal Polyps. Gastrointestinal Endoscopy (DDW 2012), 2012. Note: In press. [bibtex-entry]



2. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. Image-based Semantic Learning Software for Automatic Detection of Discriminative Criteria used for probe-based Confocal Laser Endomicroscopy (pCLE) Diagnosis of Colorectal Polyps. Gastrointestinal Endoscopy (DDW 2012), 2012. Note: In press. [bibtex-entry]



3. Barbara André, Tom Vercauteren, Anna M. Buchner, Muhammad Waseem Shahid, Michael B. Wallace, and Nicholas Ayache. Toward a structured training system for probe-based Confocal Laser Endomicroscopy (pCLE) on Barrett's Esophagus: a video retrieval approach to estimate diagnosis difficulty. Gastroenterology (DDW 2011), 2011. [bibtex-entry]



4. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. Endomicroscopic Video Retrieval Approach to Support Diagnostic Differentiation Between Neoplastic and Non-Neoplastic Colonic Polyps. Gastroenterology (DDW 2010), May 2010. [bibtex-entry]



5. Barbara André, Tom Vercauteren, Aymeric Perchant, Michael B. Wallace, Anna M. Buchner, and Nicholas Ayache. Endomicroscopic image retrieval and classification using invariant visual features. Pesented as a poster at the third edition of the International Computer Vision Summer School 2009 (ICVSS'09), July 2009. [bibtex-entry]



6. Tommaso Mansi, Barbara André, Maxime Sermesant, Hervé Delingette, Nicholas Ayache, and Younes Boudjemline. Simulation personnalisée de replacements valvulaires pulmonaires grâce à l'utilisation d'un modèle mathématique du coeur. Archives de Pédiatrie - Congrès des Sociétés Françaises Médico-chirurgicales Pédiatriques, June 2009. [bibtex-entry]

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