Articles in journal, book chapters

1. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. Learning Semantic and Visual Similarity for Endomicroscopy Video Retrieval. IEEE Transactions on Medical Imaging, 2012. Note: To appear. HAL ID: inria-00618057. [bibtex-entry]



2. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, and José Braga. Comparison of the endocranial ontogenies between chimpanzees and bonobos via temporal regression and spatiotemporal registration. Journal of Human Evolution, 62(1):74 - 88, 2012. ISSN: 0047-2484. Keyword(s): Endocranium, Virtual anthropology, Ontogeny, Shape regression, Spatiotemporal registration. [bibtex-entry]



3. Christophe Person, Valerie Louis-Dorr, Sylvain Poussier, Olivier Commowick, Gregoire Malandain, Louis Maillard, Didier Wolf, Nicolas Gillet, Veronique Roch, Gilles Karcher, and Pierre-Yves Marie. Voxel-Based Quantitative Analysis of Brain Images From 18F-FDG PET With a Block-Matching Algorithm for Spatial Normalization. Clin Nucl Med, 37(3):268-73, March 2012. [Abstract] [bibtex-entry]



4. M. Sermesant, R. Chabiniok, P. Chinchapatnam, T. Mansi, F. Billet, P. Moireau, J.M. Peyrat, K. Wong, J. Relan, K. Rhode, M. Ginks, P. Lambiase, H. Delingette, M. Sorine, C.A. Rinaldi, D. Chapelle, R. Razavi, and N. Ayache. Patient-specific electromechanical models of the heart for the prediction of pacing acute effects in CRT: A preliminary clinical validation. Medical Image Analysis, 16(1):201-215, 2012. HAL ID: inria-00616191. [bibtex-entry]

1. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. A Smart Atlas for Endomicroscopy using Automated Video Retrieval. Medical Image Analysis, 15(4):460-476, August 2011. HAL ID: inria-00616190. Keyword(s): Content-Based Video Retrieval (CBVR), Endomicroscopy, Bag-of-Visual-Words (BoW), Video-mosaicing. [Abstract] [bibtex-entry]



2. Nicholas Ayache, Olivier Clatz, Hervé Delingette, Grégoire Malandain, Xavier Pennec, and Maxime Sermesant. Vers un patient numérique personnalisé pour le diagnostic et la thérapie guidés par l'image. Médecine / Sciences, 27:208-213, March 2011. HAL ID: inria-00616192. [bibtex-entry]



3. N. Ayache, H. Delingette, and M. Sermesant. Le coeur numérique personnalisé. Bulletin de l'Académie Nationale de Médecine, 195(8), November 2011. [bibtex-entry]



4. O. Camara, M. Sermesant, P. Lamata, L. Wang, M. Pop, J. Relan, M. De Craene, H. Delingette, H. Liu, S. Niederer, A. Pashaei, G. Plank, D. Romero, R. Sebastian, K.C.L. Wong, H. Zhang, N. Ayache, A.F. Frangi, P. Shi, N.P. Smith, and G.A. Wright. Inter-Model Consistency and Complementarity: Learning from ex-vivo Imaging and Electrophysiological Data towards an Integrated Understanding of Cardiac Physiology. Progress in Biophysics and Molecular Biology, 107:122-133, 2011. HAL ID: inria-00616197. [bibtex-entry]



5. François Chung, Jérôme Schmid, Nadia Magnenat-Thalmann, and Hervé Delingette. Comparison of statistical models performance in case of segmentation using a small amount of training datasets. The Visual Computer, 27(2):141-151, February 2011. Note: 10.1007/s00371-010-0536-9. HAL ID: inria-00616199. [bibtex-entry]



6. H. Delingette, F. Billet, K. C. L. Wong, M. Sermesant, K. Rhode, M. Ginks, C. A. Rinaldi, R. Razavi, and N. Ayache. Personalization of Cardiac Motion and Contractility from Images using Variational Data Assimilation. IEEE transactions on bio-medical engineering, 2011. Note: In Press. HAL ID: inria-00616183. [bibtex-entry]



7. Stanley Durrleman, Pierre Fillard, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Registration, Atlas Estimation and Variability Analysis of White Matter Fiber Bundles Modeled as Currents. NeuroImage, 55(3):1073-1090, 2011. ISSN: 1053-8119. HAL ID: inria-00541930. Keyword(s): Computational Anatomy. [bibtex-entry]



8. Pierre Fillard, Xavier Pennec, Paul M. Thompson, and Nicholas Ayache. Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines. NeuroImage, 2011. Note: Accepted for publication. HAL ID: inria-00616179. [bibtex-entry]



9. Ezequiel Geremia, Olivier Clatz, Bjoern H. Menze, Ender Konukoglu, Antonio Criminisi, and Nicholas Ayache. Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel Magnetic Resonance Images. NeuroImage, 57(2):378-90, July 2011. HAL ID: inria-00616194. [bibtex-entry]



10. BM Kelm, FO Kaster, A Henning, MA Weber, P Bachert, P Boesiger, FA Hamprecht, and BH Menze. Using spatial prior knowledge in the spectral fitting of MRS images. NMR in Biomedicine, [Epub ahead of print], 2011. HAL ID: inria-00616193. [bibtex-entry]



11. E. Konukoglu, J. Relan, U. Cilingir, B. Menze, P. Chinchapatnam, A. Jadidi, H. Cochet, M. Hocini, H. Delingette, P. Jaïs, M. Haïssaguerre, N. Ayache, and M. Sermesant. Efficient Probabilistic Model Personalization Integrating Uncertainty on Data and Parameters: Application to Eikonal-Diffusion Models in Cardiac Electrophysiology. Progress in Biophysics and Molecular Biology, 2011. Note: Accepted. HAL ID: inria-00616198. [bibtex-entry]



12. Georg Langs, Bjoern H. Menze, Danial Lashkari, and Polina Golland. Detecting stable distributed patterns of brain activation using Gini contrast. NeuroImage, 56:497-507, 2011. HAL ID: inria-00616195. [bibtex-entry]



13. Marco Lorenzi, Alberto Beltramello, Nicola Mercuri, Elisa Canu, Giada Zoccatelli, Francesca Pizzini, Franco Alessandrini, Maria Cotelli, Sandra Rosini, Daniela Costardi, Carlo Caltagirone, and Giovanni Frisoni. Effect of memantine on resting state default mode network activity in Alzheimer's disease. Drugs and Aging, 2011. Note: To appear. [bibtex-entry]



14. Tommaso Mansi, Xavier Pennec, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. iLogDemons: A Demons-Based Registration Algorithm for Tracking Incompressible Elastic Biological Tissues. International Journal of Computer Vision, 92(1):92-111, 2011. HAL ID: inria-00616187. [bibtex-entry]



15. Tommaso Mansi, Ingmar Voigt, Benedetta Leonardi, Xavier Pennec, Stanley Durrleman, Maxime Sermesant, Hervé Delingette, Andrew M. Taylor, Younes Boudjemline, Giacomo Pongiglione, and Nicholas Ayache. A Statistical Model for Quantification and Prediction of Cardiac Remodelling: Application to Tetralogy of Fallot. IEEE Transactions on Medical Imaging, 9(30):1605-1616, September 2011. HAL ID: inria-00616185. [bibtex-entry]



16. Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Gregoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie R. McClelland, Sebastien Ourselin, Sascha E.A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, Rene Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas Tustison, Brian Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, and Josien P.W. Pluim. Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge. IEEE Trans Med Imaging, 30(11):1901-20, November 2011. HAL ID: inserm-00607794. [Abstract] [bibtex-entry]



17. E. Pernod, M. Sermesant, E. Konukoglu, J. Relan, H. Delingette, and N. Ayache. A Multi-Front Eikonal Model of Cardiac Electrophysiology for Interactive Simulation of Radio-Frequency Ablation. Computers and Graphics, 35:431-440, 2011. HAL ID: inria-00616180. [bibtex-entry]



18. K.M Pohl, E. Konukoglu, S. Novellas, N. Ayache, A. Fedorov, I.-F. Talos, A. Golby, W.M. Wells, R. Kikinis, and P.M. Black. A New Metric for Detecting Change in Slowly Evolving Brain Tumors: Validation in Meningioma Patients. Neurosurgery, 68(1 Suppl Operative):225-33, March 2011. HAL ID: inria-00616196. [bibtex-entry]



19. Jatin Relan, Phani Chinchapatnam, Maxime Sermesant, Kawal Rhode, Matt Ginks, Hervé Delingette, C. Aldo Rinaldi, Reza Razavi, and Nicholas Ayache. Coupled Personalization of Cardiac Electrophysiology Models for Prediction of Ischaemic Ventricular Tachycardia. Journal of the Royal Society Interface Focus, 1(3):396-407, 2011. HAL ID: inria-00616188. [bibtex-entry]



20. Jatin Relan, Mihaela Pop, Hervé Delingette, Graham Wright, Nicholas Ayache, and Maxime Sermesant. Personalisation of a Cardiac Electrophysiology Model using Optical Mapping and MRI for Prediction of Changes with Pacing. IEEE Transactions on Bio-Medical Engineering, 58(12):3339-3349, 2011. HAL ID: inria-00616184. [bibtex-entry]



21. Kawal Rhode and Maxime Sermesant. Modeling and Registration for Electrophysiology Procedures Based on Three-Dimensional Imaging. Current Cardiovascular Imaging Reports, 4:116-126, 2011. HAL ID: inria-00616181. [bibtex-entry]



22. N. Smith, A. de Vecchi, M. McCormick, D. Nordsletten, O. Camara, A.F. Frangi, H. Delingette, M. Sermesant, J. Relan, N. Ayache, M. W. Krueger, W. Schulze, R. Hose, I. Valverde, P. Beerbaum, C. Staicu, M. Siebes, J. Spaan, P. Hunter, J. Weese, H. Lehmann, D. Chapelle, and R. Razavi. euHeart: Personalized and integrated cardiac care using patient-specific cardiovascular modelling. Journal of the Royal Society Interface Focus, 1(3):349-364, 2011. ISSN: 2042-8898. HAL ID: inria-00616189. [bibtex-entry]



23. J. Thariat, L. Ramus, P. Maingon, G. Odin, V. Grégoire, V. Darcourt, P.Y. Marcy, N. Guevara, M.H. Orlanducci, S. Marcie, G. Poissonnet, A. Bozec, O. Dassonville, F. Demard, L. Castillo, J. Santini, and G. Malandain. DENTALMAPS: Automatic Dental Delineation for Radiotherapy Planning in Head and Neck Cancer. Int J Radiat Oncol Biol Phys, 2011. Note: In press. HAL ID: inria-00616186. [bibtex-entry]



24. C. Öhman, D. M. Espino, T. Heimann, M. Baleani, H. Delingette, and M. Viceconti. Subject-specific knee joint model: Design of an experiment to validate a multi-body finite element model. The Visual Computer, 27:153-159, 2011. Note: To appear. HAL ID: inria-00616200. [bibtex-entry]



25. Andriy Fedorov, Andriy Kot, Yixun Liu, Olivier Clatz, Peter Black, Alexandra Golby, Ron Kikinis, and Nikos Chrisochoides. Toward Improved Tumor Targeting for Image Guided Neurosurgery with Intra-operative Parametric Search using Distributed and Grid Computing. In Dynamic Data Driven Applications Systems. Springer, 2011. Note: To appear. [bibtex-entry]



26. T. Heimann and Hervé Delingette. Model-based segmentation. In Thomas Martin Deserno, editor, Biomedical Image Processing. Springer, 2011. ISBN: 978-3-642-15815-5. HAL ID: inria-00616063. [bibtex-entry]



27. B H Menze, E Stretton, E Konukoglu, and N. Ayache. Image-based modeling of tumor growth in patients with glioma.. In C S Garbe, R Rannacher, U Platt, and T Wagner, editors, Optimal control in image processing. Springer, Heidelberg/Germany, 2011. [bibtex-entry]



28. Xavier Pennec and Pierre Fillard. Statistical Computing On Non-Linear Spaces For Computational Anatomy. In N. Paragios, J. Duncan, and Nicholas Ayache, editors, Biomedical Image Analysis: Methodologies And Applications. Springer, 2011. Note: To Appear. HAL ID: inria-00616201. [bibtex-entry]

1. Caroline Brun, Natasha Leporé, Xavier Pennec, Y.-Y. Chou, A.D. Lee, Greig de Zubicaray, K.L. McMahon, M.J. Wright, James C. Gee, and Paul M. Thompson. A Non-Conservative Lagrangian Framework for Statistical Fluid Registration: SAFIRA. IEEE Transactions on Medical Imaging, 2010. [bibtex-entry]



2. M Cohen, C Lebrun, D Aufauvre, S Chanalet, C Filleau-Bertogliatti, W Camu, P Thomas, G Malandain, and P Clavelou. [Longitudinal study of health related quality of life in multiple sclerosis: correlation with MRI parameters]. Rev Neurol (Paris), 166(11):894-900, November 2010. Note: [In French]. Keyword(s): Adolescent, Adult, Atrophy, Brain, pathology, Cognition, physiology, Contrast Media, Disease Progression, Female, Gadolinium, Humans, Image Processing Computer-Assisted, Interferon Type I, therapeutic use, Longitudinal Studies, Magnetic Resonance Imaging, Male, Middle Aged, Multiple Sclerosis Chronic Progressive, pathology, Neuropsychological Tests, Quality of Life, Recombinant Proteins, Young Adult. [Abstract] [bibtex-entry]



3. Hervé Delingette and Maxime Sermesant. Le coeur numérique. Doc Sciences, 13:26-33, October 2010. [bibtex-entry]



4. Romain Fernandez, Pradeep Das, Vincent Mirabet, Eric Moscardi, Jan Traas, Jean-Luc Verdeil, Grégoire Malandain, and Christophe Godin. Imaging plant growth in 4-D: robust tissue reconstruction and lineaging at cell resolution. Nature Methods, 7(7):547-553, 2010. HAL ID: hal-00521491. [Abstract] [bibtex-entry]



5. Damien Galanaud, Stéphane Haik, Marius George Linguraru, Jean-Philippe Ranjeva, Baptiste Faucheux, Elsa Kaphan, Nicholas Ayache, Jacques Chiras, Patrick Cozzone, Didier Dormont, and Jean-Philippe Brandel. Combined diffusion imaging and MR Spectroscopy in Human Prion Diseases. AJNR. American journal of neuroradiology, 31(7):1311-8, 2010. [Abstract] [bibtex-entry]



6. D. Gianni, S. McKeever, T. Yu, R. Britten, Hervé Delingette, A. Frangi, P. Hunter, and Nic Smith. Sharing and reusing cardiovascular anatomical models over the Web: a step towards the implementation of the virtual physiological human project. Philos Transact of the Royal Society A Mathematical Physical Engineering Sciences, 368:3039-3056, June 2010. [bibtex-entry]



7. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating Glioma Invasion Margin in Brain Magnetic Resonance Images: Suggesting New Irradiation Margins. Medical Image Analysis, 14(2):111-125, 2010. [bibtex-entry]



8. Ender Konukoglu, Olivier Clatz, Bjoern H. Menze, Marc-André Weber, Bram Stieltjes, Emmanuel Mandonnet, Hervé Delingette, and Nicholas Ayache. Image Guided Personalization of Reaction-Diffusion Type Tumor Growth Models Using Modified Anisotropic Eikonal Equations. IEEE Transactions on Medical Imaging, 29(1):77-95, 2010. [bibtex-entry]



9. Marco Lorenzi, Michael Donohue, Donata Paternico, Cristina Scarpazza, Susanne Ostrowitzki, Olivier Blin, Elaine Irving, and G. Frisoni. Enrichment through biomarkers in clinical trials of Alzheimer's drugs in patients with mild cognitive impairment. Neurobiology of Aging, pp 1443-51, August 2010. Note: Special Issue on ADNI. [bibtex-entry]



10. Stéphanie Marchesseau, T. Heimann, Simon Chatelin, Rémy Willinger, and Hervé Delingette. Fast porous visco-hyperelastic soft tissue model for surgery simulation: application to liver surgery. Progress in Biophysics and Molecular Biology, 103(2-3):185-196, 2010. HAL ID: hal-00593223. [bibtex-entry]



11. Markand D. Patel, Nicolas Toussaint, Geoffrey D. Charles-Edwards, Jean-Pierre Lin, and Philip G. Batchelor. Distribution and Fibre Field Similarity Mapping of the Human Anterior Commissure Fibres by Diffusion Tensor Imaging. Magnetic Resonance Materials in Physics, Biology and Medicine, February 2010. [bibtex-entry]



12. Jean-Marc Peyrat, Hervé Delingette, Maxime Sermesant, Chenyang Xu, and Nicholas Ayache. Registration of 4D Cardiac CT Sequences Under Trajectory Constraints With Multichannel Diffeomorphic Demons. IEEE Transactions on Medical Imaging, 29(7):1351-1368, July 2010. [bibtex-entry]



13. Liliane Ramus, Juliette Thariat, Pierre-Yves Marcy, Yoann Pointreau, Guillaume Bera, Olivier Commowick, and Grégoire Malandain. Outils de contourage, utilisation et construction d'atlas anatomiques : exemples des cancers de la tete et du cou. Cancer radiothérapie, 14(3):206-12, 2010. Note: In French. HAL ID: inria-00616098. [Abstract] [bibtex-entry]



14. Tammy Riklin-Raviv, Koen Van Leemput, Bjoern H. Menze, William M. Wells, and Polina Golland. Segmentation of image ensembles via latent atlases. Medical Image Analysis, 14(5):654-65, 2010. [bibtex-entry]



15. Boon Thye Thomas Yeo, Mert Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl, and Polina Golland. Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration. IEEE Transactions on Medical Imaging, 29(3):650-668, March 2010. Note: PMID:19709963. [Abstract] [bibtex-entry]



16. Ender Konukoglu, Olivier Clatz, Hervé Delingette, and Nicholas Ayache. Personalization of Reaction-Diffusion Tumor Growth Models in MR Images: Application to Brain Gliomas Characterization and Radiotherapy Planning. In Thomas S. Deisboeck and Georgios Stamatakos, editors, Multiscale Cancer Modeling, Chapman & Hall/CRC Mathematical & Computational Biology. CRC Press, December 2010. [bibtex-entry]



17. Maxime Sermesant and Reza Razavi. Personalized Computational Models of the Heart for Cardiac Resynchronization Therapy. In Roy C.P. Kerckhoffs, editor, Patient-Specific Modeling of the Cardiovascular System, pages 167-182. Springer New York, 2010. ISBN: 978-1-4419-6691-9. Keyword(s): Life Sciences. [bibtex-entry]

1. Vincent Arsigny, Olivier Commowick, Nicholas Ayache, and Xavier Pennec. A Fast and Log-Euclidean Polyaffine Framework for Locally Linear Registration. Journal of Mathematical Imaging and Vision, 33(2):222-238, 2009. [bibtex-entry]



2. Éric Bardinet, Manik Bhattacharjee, Didier Dormont, Bernard Pidoux, Grégoire Malandain, Michael Schupbach, Nicholas Ayache, Philippe Cornu, Yves Agid, and Jerome Yelnik. A three-dimensional histological atlas of the human basal ganglia. II. Atlas deformation strategy and evaluation in deep brain stimulation for Parkinson disease.. Journal of Neurosurgery, 110(2):208-19, February 2009. Keyword(s): Basal Ganglia, pathology, Brain Mapping, methods, Deep Brain Stimulation, methods, Humans, Image Interpretation Computer-Assisted, methods, Imaging Three-Dimensional, methods, Magnetic Resonance Imaging, methods, Medical Illustration, Microelectrodes, Microscopy, Parkinson Disease, pathology, Red Nucleus, pathology, Sensitivity and Specificity, Substantia Nigra, pathology, Subthalamic Nucleus, pathology. [Abstract] [bibtex-entry]



3. Caroline Brun, Natasha Leporé, Xavier Pennec, Agatha D Lee, Marina Barysheva, Sarah K Madsen, Christina Avedissian, Yi-Yu Chou, Greig I. de Zubicaray, Katie McMahon, Margaret Wright, Arthur W. Toga, and Paul M. Thompson. Mapping the Regional Influence of Genetics on Brain Structure Variability - A Tensor-Based Morphometry Study. NeuroImage, 48(1):37-49, October 2009. [bibtex-entry]



4. Jaydev P. Desai and Nicholas Ayache. Editorial: Special Issue on Medical Robotics. International Journal of Robotics Research, 28(9):1099-1100, 2009. [bibtex-entry]



5. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Statistical Models on Sets of Curves and Surfaces based on Currents. Medical Image Analysis, 13(5):793-808, October 2009. [bibtex-entry]



6. Heike Hufnagel, Jan Ehrhardt, Xavier Pennec, Nicholas Ayache, and Heinz Handels. Computation of a Probabilistic Statistical Shape Model in a Maximum-a-posteriori Framework. Methods of Information in Medicine, 48(4):314-319, 2009. [bibtex-entry]



7. Arno Klein, Jesper Andersson, Babak A. Ardekani, John Ashburner, Brian Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, and Ramin V. Parsey. Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage, 46(3):786-802, July 2009. HAL ID: inserm-00360790. [bibtex-entry]



8. S. Nicolau, Xavier Pennec, Luc Soler, X. Buy, A. Gangi, Nicholas Ayache, and J. Marescaux. An Augmented Reality System for Liver Thermal Ablation: Design and Evaluation on Clinical Cases. Medical Image Analysis, 13(3):494-506, June 2009. [bibtex-entry]



9. Mihaela Pop, Maxime Sermesant, D Lepiller, M V Truong, Elliot McVeigh, Eugene Crystal, Alexander Dick, Hervé Delingette, Nicholas Ayache, and Graham Wright. Fusion of optical imaging and MRI for the evaluation and adjustment of macroscopic models of cardiac electrophysiology: A feasibility study. Medical Image Analysis, 13(2):370-80, April 2009. [bibtex-entry]



10. R Sims, A Isambert, V Gregoire, F Bidault, L Fresco, J Sage, J Mills, J Bourhis, D Lefkopoulos, Olivier Commowick, M Benkebil, and Grégoire Malandain. A pre-clinical assessment of an atlas-based automatic segmentation tool for the head and neck. Radiotherapy Oncology, 93(3):474-8, December 2009. [Abstract] [bibtex-entry]



11. Jean-Christophe Souplet, Christine Lebrun, Stéphane Chanalet, Nicholas Ayache, and Grégoire Malandain. Revue des approches de segmentation des lésions de sclérose en plaques dans les séquences conventionnelles IRM. Revue Neurologique, 165(1):7-14, 2009. Note: In french. [bibtex-entry]



12. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Diffeomorphic Demons: Efficient Non-parametric Image Registration. NeuroImage, 45(1, Supp.1):S61-S72, March 2009. HAL ID: inserm-00349600. [bibtex-entry]



13. Boon Thye Thomas Yeo, Tom Vercauteren, Pierre Fillard, Jean-Marc Peyrat, Xavier Pennec, Polina Golland, Nicholas Ayache, and Olivier Clatz. DT-REFinD: Diffusion Tensor Registration with Exact Finite-Strain Differential. IEEE Transactions on Medical Imaging, 28(12):1914-1928, December 2009. Note: PMID:19556193. HAL ID: inria-00502720. [bibtex-entry]



14. Nicholas Ayache, Olivier Clatz, Hervé Delingette, Grégoire Malandain, Xavier Pennec, and Maxime Sermesant. Asclepios: a Research Project-Team at INRIA for the Analysis and Simulation of Biomedical Images. In Y. Bertot, G. Huet, J.-J. Lévy, and G. Plotkin, editors, From semantics to computer science: essays in honor of Gilles Kahn, pages 415-436. Cambridge University Press, 2009. [bibtex-entry]



15. C. Germain-Renaud, V. Breton, P. Clarysse, B. Delhay, Y. Gaudeau, T. Glatard, E. Jannot, Y. Legré, Johan Montagnat, J.-M. Moureau, A. Osorio, Xavier Pennec, J. Schaerer, and R. Texier. Grid Analysis of Radiological Data. In Mario Cannataro, editor, Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine, and Healthcare, pages 363-391. IGI Global, 2009. Note: IGI-Global Medical Information Science Discoveries Research Award 2009. [bibtex-entry]



16. Tommaso Mansi, Barbara André, Michael Lynch, Maxime Sermesant, Hervé Delingette, Younes Boudjemline, and Nicholas Ayache. Virtual Pulmonary Valve Replacement Interventions with a Personalised Cardiac Electromechanical Model. In Nadia Magnenat-Thalmann, Jian J. Zhang, and David D. Feng, editors, Recent Advances in the 3D Physiological Human, pages 201-210. Springer, November 2009. ISBN: 978-1-84882-564-2. [bibtex-entry]



17. Jérôme Schmid, Anders Sandholm, François Chung, Daniel Thalmann, Hervé Delingette, and Nadia Magnenat-Thalmann. Musculoskeletal simulation model generation from MRI datasets and motion capture data. In Nadia Magnenat-Thalmann, Jian J. Zhang, and David D. Feng, editors, Recent Advances in the 3D Physiological Human, pages 3-19. Springer, February 2009. ISBN: 978-1-84882-564-2. [bibtex-entry]

1. Neculai Archip, Olivier Clatz, Stephen Whalen, Simon Dimaio, Peter Black, Alexandra Golby, Ferenc Jolesz, and Simon Warfield. Compensation of geometric distortion effects on intraoperative magnetic resonance imaging for enhanced visualization in image-guided neurosurgery. Neurosurgery, 62(3 supl. 1):209-15, March 2008. [bibtex-entry]



2. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, and Nicholas Ayache. Articulated Spine Models for 3D Reconstruction from Partial Radiographic Data. IEEE Transactions on Bio-Medical Engineering, 55(11):2565-2574, November 2008. [bibtex-entry]



3. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, and Nicholas Ayache. Geometric Variability of the Scoliotic Spine using Statistics on Articulated Shape Models. IEEE Transactions on Medical Imaging, 27(4):557-568, 2008. [bibtex-entry]



4. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, and Nicholas Ayache. Principal Deformations Modes of Articulated Models for the Analysis of 3D Spine Deformities. Electronic Letters on Computer Vision and Image Analysis, 7(4):13-31, December 2008. [bibtex-entry]



5. Pierre-Yves Bondiau, Olivier Clatz, Maxime Sermesant, Pierre-Yves Marcy, Hervé Delingette, Marc Frenay, and Nicholas Ayache. Biocomputing: numerical simulation of glioblastoma growth using diffusion tensor imaging. Physics in Medicine and Biology, 53(4):879-93, February 2008. [bibtex-entry]



6. P. Chinchapatnam, K.S. Rhode, M. Ginks, C.A. Rinaldi, P. Lambiase, R. Razavi, S. Arridge, and M. Sermesant. Model-Based Imaging of Cardiac Apparent Conductivity and Local Conduction Velocity for Diagnosis and Planning of Therapy. IEEE Transactions on Medical Imaging, 27(11):1631-1642, 2008. [bibtex-entry]



7. Olivier Commowick, Vincent Arsigny, Aurélie Isambert, Jimena Costa, Frédéric Dhermain, François Bidault, Pierre-Yves Bondiau, Nicholas Ayache, and Grégoire Malandain. An efficient locally affine framework for the smooth registration of anatomical structures. Medical Image Analysis, 12(4):427-41, August 2008. Keyword(s): Algorithms, Brain, anatomy & histology, Diagnostic Imaging, methods, Humans, Image Processing Computer-Assisted, Radiotherapy Planning Computer-Assisted, methods, Sensitivity and Specificity. [Abstract] [bibtex-entry]



8. Olivier Commowick, Vincent Grégoire, and Grégoire Malandain. Atlas-Based Delineation of Lymph Node Levels in Head and Neck Computed Tomography Images. Radiotherapy Oncology, 87(2):281-289, 2008. [bibtex-entry]



9. H. Delingette. Triangular Springs for Modeling Nonlinear Membranes. IEEE Transactions on Visualization and Computer Graphics, 14(2), March/April 2008. [bibtex-entry]



10. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Paul Thompson, and Nicholas Ayache. Inferring brain variability from diffeomorphic deformations of currents: an integrative approach. Medical Image Analysis, 12(5):626-637, 2008. [bibtex-entry]



11. Tristan Glatard, Johan Montagnat, David Emsellem, and Diane Lingrand. A Service-Oriented Architecture enabling dynamic services grouping for optimizing distributed workflows execution. Future Generation Computer Systems, 7(24):720-730, July 2008. HAL ID: hal-00459808. [bibtex-entry]



12. Tristan Glatard, Johan Montagnat, Diane Lingrand, and Xavier Pennec. Flexible and efficient workflow deployment of data-intensive applications on GRIDS with MOTEUR. International Journal of High Performance Computing Applications, 3(22):347-360, August 2008. Note: Special issue on Workflow Systems in Grid Environments. [bibtex-entry]



13. S Haik, D Galanaud, MG Linguraru, K Peoc'h, N Privat, BA Faucheux, N Ayache, JJ Hauw, D Dormont, and JP Brandel. In Vivo Detection of Thalamic Gliosis: A Pathoradiologic Demonstration in Familial Fatal Insomnia. Archives of Neurology, 65(4):545-549, April 2008. [Abstract] [bibtex-entry]



14. H. Hufnagel, X. Pennec, J. Ehrhardt, N. Ayache, and H. Handels. Generation of a Statistical Shape Model with Probabilistic Point Correspondences and EM-ICP. International Journal for Computer Assisted Radiology and Surgery, 2(5):265-273, March 2008. [bibtex-entry]



15. A Isambert, G Bonniaud, F Lavielle, G Malandain, and D Lefkopoulos. A phantom study of the accuracy of CT, MR and PET image registrations with a block matching-based algorithm. Cancer radiothérapie, 12(8):800-8, December 2008. Keyword(s): Algorithms, Automation, Brain, pathology, Head, Humans, Magnetic Resonance Imaging, methods, Phantoms Imaging, Positron-Emission Tomography, methods, Radiotherapy Planning Computer-Assisted, methods, Software, Tomography X-Ray Computed, methods. [Abstract] [bibtex-entry]



16. Aurélie Isambert, Frédéric Dhermain, François Bidault, Olivier Commowick, Pierre-Yves Bondiau, Grégoire Malandain, and Dimitri Lefkopoulos. Evaluation of an atlas-based automatic segmentation software for the delineation of brain organs at risk in a radiation therapy clinical context. Radiotherapy Oncology, 87(1):93-9, April 2008. Keyword(s): Algorithms, Brain Neoplasms, pathology, Female, Humans, Image Interpretation Computer-Assisted, methods, Magnetic Resonance Imaging, Male, Middle Aged, ROC Curve, Retrospective Studies, Software, Tomography X-Ray Computed. [Abstract] [bibtex-entry]



17. Emmanuel Mandonnet, Johan Pallud, Olivier Clatz, Hugues Duffau, and Laurent Capelle. Computational Modelling of the WHO Grade II Glioma Dynamics: Principles and Applications to Surgical Strategy. Neurosurgical Review, 31(3):263-9, July 2008. [bibtex-entry]



18. Johan Montagnat, Tristan Glatard, Isabel Campos Plasencia, Francisco Castejon, Xavier Pennec, Giuliano Taffoni, Vladimir Voznesensky, and Claudio Vuerli. Workflow-based data parallel applications on the EGEE production grid infrastructure. Journal of Grid Computing, 6(4):369-383, December 2008. HAL ID: hal-00443362. [bibtex-entry]



19. D R Rutgers, P Fillard, G Paradot, M Tadie, P Lasjaunias, and D Ducreux. Diffusion tensor imaging characteristics of the corpus callosum in mild, moderate, and severe traumatic brain injury. AJNR. American journal of neuroradiology, 29(9):1730-5, October 2008. HAL ID: inria-00502705. Keyword(s): Adult, Anisotropy, Brain Concussion, diagnosis, Brain Injuries, diagnosis, Corpus Callosum, injuries, Diffuse Axonal Injury, diagnosis, Diffusion Magnetic Resonance Imaging, Female, Follow-Up Studies, Humans, Image Processing Computer-Assisted, Male, Middle Aged, Nerve Fibers, pathology, Young Adult. [Abstract] [bibtex-entry]



20. D R Rutgers, F Toulgoat, J Cazejust, P Fillard, P Lasjaunias, and D Ducreux. White matter abnormalities in mild traumatic brain injury: a diffusion tensor imaging study. AJNR. American journal of neuroradiology, 29(3):514-9, March 2008. HAL ID: inria-00502701. Keyword(s): Adult, Brain, pathology, Brain Injuries, pathology, Demyelinating Diseases, pathology, Diffusion Magnetic Resonance Imaging, methods, Female, Humans, Male, Nerve Fibers Myelinated, pathology, Reproducibility of Results, Sensitivity and Specificity. [Abstract] [bibtex-entry]



21. M Sermesant, J M Peyrat, P Chinchapatnam, F Billet, T Mansi, K Rhode, H Delingette, R Razavi, and N Ayache. Toward patient-specific myocardial models of the heart. Heart Failure Clinics, 4(3):289-301, July 2008. [bibtex-entry]



22. Ender Konukoglu, Xavier Pennec, Olivier Clatz, and Nicholas Ayache. Tumor Growth Modeling in Oncological Image Analysis. In I. Bankman, editor, Handbook of Medical Image Processing and Analysis - New edition, chapter 18, pages 297-307. Academic Press, December 2008. ISBN: 13: 978-0-12-373904-9. [bibtex-entry]



23. X. Pennec. Statistical computing on manifolds: from Riemannian geometry to computational anatomy. In Frank Nielsen, editor, Emerging Trends in Visual Computing, volume 5416 of LNCS, pages 347-386. Springer, 2008. ISBN: 978-3-642-00825-2. [bibtex-entry]



24. Xavier Pennec, Nicholas Ayache, and Jean-Philippe Thirion. Landmark-based registration using features identified through differential geometry. In I. Bankman, editor, Handbook of Medical Image Processing and Analysis - New edition, chapter 34, pages 565-578. Academic Press, December 2008. ISBN: 13: 978-0-12-373904-9. Keyword(s): registration, matching, validation, uncertainty. [bibtex-entry]



25. Tom Vercauteren, Nicholas Ayache, Nicolas Savoire, Grégoire Malandain, and Aymeric Perchant. Processing of In Vivo Fibered Confocal Microscopy Video Sequences. In Jens Rittscher, Raghu Machiraju, and Stephen T. C. Wong, editors, Microscopic Image Analysis for Life Science Applications, chapter 19, pages 441-463. Artech House, 2008. [bibtex-entry]

1. Elsa Angelini, Olivier Clatz, Emmanuel Mandonnet, Ender Konukoglu, Laurent Capelle, and Hugues Duffau. Glioma Dynamics and Computational Models: A Review of Segmentation, Registration, and In Silico Growth Algorithms and their Clinical Applications. Current Medical Imaging Reviews, 3(4):262-176, 2007. [bibtex-entry]



2. Neculai Archip, Olivier Clatz, Stephen Whalen, Dan Kacher, Andriy Fedorov, Andriy Kot, Nikos Chrisochoides, Ferenc Jolesz, Alexandra Golby, Peter Black, and Simon Warfield. Non-rigid alignment of preoperative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. NeuroImage, 35(2):609-24, April 2007. [bibtex-entry]



3. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Geometric Means in a Novel Vector Space Structure on Symmetric Positive-Definite Matrices. SIAM Journal on Matrix Analysis and Applications, 29(1):328-347, 2007. Keyword(s): DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics. [bibtex-entry]



4. M. A. Audette, H. Delingette, A. Fuchs, O. Burgert, and K. Chinzei. A topologically faithful, tissue-guided, spatially varying meshing strategy for computing patient-specific head models for endoscopic pituitary surgery simulation. Journal of Computer Aided Surgery, 12(1):43-52, January 2007. [bibtex-entry]



5. Valentin Becker, Tom Vercauteren, Claus Hann von Weyern, Christian Prinz, Roland M. Schmid, and Alexander Meining. High Resolution Miniprobe-based Confocal Microscopy in Combination with Video-mosaicing. Gastrointestinal Endoscopy, 66(5):1001-1007, November 2007. [bibtex-entry]



6. Olivier Clatz, Stéphane Litrico, Hervé Delingette, Philippe Paquis, and Nicholas Ayache. Dynamic Model of Communicating Hydrocephalus for Surgery Simulation. IEEE Transactions on Bio-Medical Engineering, 54(4):755-758, April 2007. [bibtex-entry]



7. Julien Dauguet, Thierry Delzescaux, Françoise Condé, Jean-François Mangin, Nicholas Ayache, Philippe Hantraye, and Vincent Frouin. Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain. Journal of Neuroscience Methods, 164(1):191-204, 2007. [bibtex-entry]



8. D. Ducreux, P. Fillard, D. Facon, A. Ozanne, J.-F. Lepeintre, J. Renoux, M. Tadié, and P. Lasjaunias. Diffusion Tensor Magnetic Resonance Imaging and Fiber Tracking in Spinal Cord Lesions: Current and Future Indications. Neuroimaging Clinics of North America, 17(1):137-147, February 2007. HAL ID: inria-00502689. [bibtex-entry]



9. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Kiralee M. Hayashi, Paul M. Thompson, and Nicholas Ayache. Measuring Brain Variability by Extrapolating Sparse Tensor Fields Measured on Sulcal Lines. NeuroImage, 34(2):639-650, January 2007. Note: Also as INRIA Research Report 5887, April 2006. PMID: 17113311. HAL ID: inria-00502521. [bibtex-entry]



10. Pierre Fillard, Xavier Pennec, Vincent Arsigny, and Nicholas Ayache. Clinical DT-MRI Estimation, Smoothing and Fiber Tracking with Log-Euclidean Metrics. IEEE Transactions on Medical Imaging, 26(11):1472-1482, November 2007. HAL ID: inria-00502645. [bibtex-entry]



11. Marius G. Linguraru, Miguel A. González Ballester, and Nicholas Ayache. Deformable Atlases for the Segmentation of Internal Brain Nuclei in Magnetic Resonance Imaging. International Journal of Computers, Communication and Control, 2(1):26-36, 2007. [bibtex-entry]



12. Marius George Linguraru, Tom Vercauteren, Mauricio Reyes Aguirre, Miguel Ángel González Ballester, and Nicholas Ayache. Segmentation Propagation from Deformable Atlases for Brain Mapping and Analysis. Brain Research Journal, 1(4):269-287, 2007. [bibtex-entry]



13. Jean-Marc Peyrat, Maxime Sermesant, Xavier Pennec, Hervé Delingette, Chenyang Xu, Eliot R. McVeigh, and Nicholas Ayache. A Computational Framework for the Statistical Analysis of Cardiac Diffusion Tensors: Application to a Small Database of Canine Hearts. IEEE Transactions on Medical Imaging, 26(11):1500-1514, November 2007. [bibtex-entry]



14. A. Pitiot, H. Delingette, and P.M. Thompson. Learning Shape Correspondence for n-D curves. International Journal of Computer Vision, 71(1):71-88, January 2007. [bibtex-entry]



15. M Reyes, G Malandain, P M Koulibaly, M A Gonzalez-Ballester, and J Darcourt. Model-based respiratory motion compensation for emission tomography image reconstruction. Physics in Medicine and Biology, 52(12):3579-600, June 2007. [Abstract] [bibtex-entry]



16. Luc Thiberville, Sophie Moreno-Swirc, Tom Vercauteren, Eric Peltier, Charlotte Cavé, and Geneviève Bourg Heckly. In Vivo Imaging of the Bronchial Wall Microstructure Using Fibered Confocal Fluorescence Microscopy. American journal of respiratory and critical care medicine, 175(1):22-31, January 2007. Note: Chosen for the cover of the AJRCCM paper issue. PMID: 17023733. HAL ID: inserm-00476448. [bibtex-entry]



17. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Grégoire Malandain, Sébastien Ourselin, Dominique Tandé, Carine Karachi, Nicholas Ayache, Philippe Cornu, and Yves Agid. A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data. NeuroImage, 34(2):618-38, January 2007. [Abstract] [bibtex-entry]



18. Grégoire Malandain. Applications de la géométrie discrète en imagerie médicale. In Géométrie discrète et images numériques, Traités IC2, pages 371-379. Hermès, 2007. [bibtex-entry]

1. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Log-Euclidean Metrics for Fast and Simple Calculus on Diffusion Tensors. Magnetic Resonance in Medicine, 56(2):411-421, August 2006. HAL ID: inria-00502678. Keyword(s): DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics. [bibtex-entry]



2. C Bensa, C Bertogliati, S Chanalet, G Malandain, P Bedoucha, and C Lebrun. Early detection of cognitive impairment in relapsing-remitting multiple sclerosis: functional-anatomical correlations and longitudinal follow-up. Revue Neurologique, 162(12):1221-31, December 2006. Note: [In French]. [Abstract] [bibtex-entry]



3. Christophe Blondel, Grégoire Malandain, Régis Vaillant, and Nicholas Ayache. Reconstruction of Coronary Arteries from a Single Rotational X-Ray Projection Sequence. IEEE Transactions on Medical Imaging, 25(5):653-663, May 2006. Keyword(s): Angiocardiography, Coronarography, Image Motion Analysis, Image Reconstruction, Tomography. [Abstract] [bibtex-entry]



4. Francis Cassot, Frederic Lauwers, Céline Fouard, Steffen Prohaska, and Valerie Lauwers-Cances. A novel three-dimensional computer-assisted method for a quantitative study of microvascular networks of the human cerebral cortex. Microcirculation, 13(1):1-18, January 2006. HAL ID: hal-00308888. [Abstract] [bibtex-entry]



5. Olivier Clatz, Emmanuel Mandonnet, Stéphane Chanalet, Christine Lebrun, Ender Konukoglu, Hervé Delingette, Nicholas Ayache, and Pierre-Yves Bondiau. Modèles Biomathématiques de Croissance Des Gliomes : Recherche en Informatique et Perspectives en Neuro-oncologie. Neurologies, 9(93):665-667, 2006. [bibtex-entry]



6. O. Colliot, T. Mansi, N. Bernasconi, V. Naessens, D. Klironomos, and A. Bernasconi. Segmentation of focal cortical dysplasia lesions on MRI using level set evolution. NeuroImage, 32(4):1621-1630, October 2006. [Abstract] [bibtex-entry]



7. Hervé Delingette and Nicholas Ayache. La simulation de Chirurgie Hépatique. Pour la science, 52(52):106-109, July 2006. Keyword(s): Simulation. [bibtex-entry]



8. Hervé Delingette, Xavier Pennec, Luc Soler, Jacques Marescaux, and Nicholas Ayache. Computational Models for Image Guided, Robot-Assisted and Simulated Medical Interventions. Proceedings of the IEEE, 94(9):1678- 1688, September 2006. [bibtex-entry]



9. Denis Ducreux, Frédéric Dhermain, and Pierre Fillard. [Functional MRI in brain tumours]. Cancer radiothérapie, 10(6-7):330-3, November 2006. Note: [In French]. HAL ID: inria-00502605. Keyword(s): Brain, anatomy & histology, Brain Mapping, Brain Neoplasms, pathology, Humans, Magnetic Resonance Imaging, methods, Prognosis. [Abstract] [bibtex-entry]



10. Denis Ducreux, Jean-Francois Lepeintre, Pierre Fillard, C. Loureiro, Marc Tadié, and Pierre Lasjaunias. MR diffusion tensor imaging and fiber tracking in 5 spinal cord astrocytomas. AJNR. American journal of neuroradiology, 27(1):214-6, January 2006. HAL ID: inria-00502663. Keyword(s): Adult, Astrocytoma, diagnosis, Diffusion Magnetic Resonance Imaging, Female, Humans, Image Processing Computer-Assisted, Imaging Three-Dimensional, Male, Nerve Fibers, pathology, Spinal Cord, pathology, Spinal Cord Neoplasms, diagnosis. [Abstract] [bibtex-entry]



11. Céline Fouard, Grégoire Malandain, Steffen Prohaska, and Malte Westerhoff. Blockwise Processing Applied to Brain Microvascular Network Study. IEEE Transactions on Medical Imaging, 25(10):1319-1328, 2006. HAL ID: hal-00308887. [Abstract] [bibtex-entry]



12. M. Liberatore, C. Denier, Pierre Fillard, M.C. Petit-Lacour, F. Benoudiba, Pierre Lasjaunias, and Denis Ducreux. [Diffusion tensor imaging and tractography of central pontine myelinolysis]. J Neuroradiol, 33(3):189-193, June 2006. Note: [In French]. HAL ID: inria-00502681. Keyword(s): Adult, Anorexia, complications, Diffusion Magnetic Resonance Imaging, Female, Humans, Myelinolysis Central Pontine, diagnosis, Pyramidal Tracts, pathology. [Abstract] [bibtex-entry]



13. M.G. Linguraru, N. Ayache, E. Bardinet, M.A. González Ballester, D. Galanaud, S. Haïk, B.A. Faucheux, J.J. Hauw, P. Cozzone, D. Dormont, and J.P. Brandel. Differentiation of sCJD and vCJD Forms by Automated Analysis of Basal Ganglia Intensity Distribution in Multisequence MRI of the Brain - Definition and Evaluation of New MRI-based Ratios. IEEE Transactions on Medical Imaging, 25(8):1052-1067, 2006. HAL ID: hal-00092290. [bibtex-entry]



14. M.G. Linguraru, K. Marias, R. English, and J.M. Brady. A Biologically Inspired Algorithm for Microcalcification Cluster Detection. Medical Image Analysis, 10(6), 2006. [bibtex-entry]



15. Valérie Moreau-Villéger, Hervé Delingette, Maxime Sermesant, Hiroshi Ashikaga, Elliot McVeigh, and Nicholas Ayache. Building Maps of Local Apparent Conductivity of the Epicardium with a 2D Electrophysiological Model of the Heart. IEEE Transactions on Bio-Medical Engineering, 53(8):1457-1466, August 2006. [bibtex-entry]



16. Xavier Pennec. Intrinsic Statistics on Riemannian Manifolds: Basic Tools for Geometric Measurements. Journal of Mathematical Imaging and Vision, 25(1):127-154, July 2006. Note: A preliminary appeared as INRIA RR-5093, January 2004. Keyword(s): Fréchet means, Statistics, Lie groups, Riemannian geometry. [bibtex-entry]



17. Xavier Pennec, Pierre Fillard, and Nicholas Ayache. A Riemannian Framework for Tensor Computing. International Journal of Computer Vision, 66(1):41-66, January 2006. Note: A preliminary version appeared as INRIA Research Report 5255, July 2004. Keyword(s): Tensors, regularization, PDE, geometry, Riemannian geometry. [Abstract] [bibtex-entry]



18. Alain Pitiot, Eric Bardinet, Paul M. Thompson, and Grégoire Malandain. Piecewise Affine Registration of Biological Images for Volume Reconstruction. Medical Image Analysis, 10(3):465-483, June 2006. Keyword(s): registration, clustering, reconstruction, histology, MRI. [Abstract] [bibtex-entry]



19. J Renoux, D Facon, P Fillard, I Huynh, P Lasjaunias, and D Ducreux. MR diffusion tensor imaging and fiber tracking in inflammatory diseases of the spinal cord. AJNR. American journal of neuroradiology, 27(9):1947-51, October 2006. HAL ID: inria-00502684. Keyword(s): Adult, Anisotropy, Diagnosis Differential, Diffusion Magnetic Resonance Imaging, Female, Humans, Image Enhancement, Image Processing Computer-Assisted, Male, Middle Aged, Multiple Sclerosis, diagnosis, Myelitis, diagnosis, Myelitis Transverse, diagnosis, Nerve Fibers, pathology, Neurologic Examination, Prospective Studies, Reference Values, Sarcoidosis, diagnosis, Spinal Cord, pathology. [Abstract] [bibtex-entry]



20. Gilles Scarella, Olivier Clatz, Stéphane Lanteri, Grégory Beaume, Steve Oudot, Jean-Philippe Pons, Serge Piperno, Patrick Joly, and Joe Wiart. Realistic numerical modelling of human head tissue exposure to electromagnetic waves from cellular phones. Comptes Rendus de l'Académie des Sciences - Physics, 7(5):501-508, June 2006. HAL ID: hal-00607719. [Abstract] [bibtex-entry]



21. Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. An Electromechanical Model of the Heart for Image Analysis and Simulation. IEEE Transactions on Medical Imaging, 25(5):612-625, 2006. [bibtex-entry]



22. Maxime Sermesant, Philippe Moireau, Oscar Camara, Jacques Sainte-Marie, Rado Andriantsimiavona, Robert Cimrman, Derek L. Hill, Dominique Chapelle, and Reza Razavi. Cardiac function estimation from MRI using a heart model and data assimilation: Advances and difficulties. Medical Image Analysis, 10(4):642-656, 2006. [bibtex-entry]



23. Arjan W Simonetti, Vedat A Elezi, Regine Farion, Gregoire Malandain, Christoph Segebarth, Chantal Remy, and Emmanuel L Barbier. A low temperature embedding and section registration strategy for 3D image reconstruction of the rat brain from autoradiographic sections. Journal of Neuroscience Methods, 158(2):242-50, December 2006. HAL ID: inserm-00388981. [Abstract] [bibtex-entry]



24. Tom Vercauteren, Aymeric Perchant, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy. Medical Image Analysis, 10(5):673-692, October 2006. Note: Annual Medical Image Analysis (MedIA) Best Paper Award 2006. PMID: 16887375. HAL ID: inria-00163961. [bibtex-entry]

1. Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Polyrigid and Polyaffine Transformations: a Novel Geometrical Tool to Deal with Non-Rigid Deformations - Application to the registration of histological slices. Medical Image Analysis, 9(6):507-523, December 2005. Keyword(s): Non-rigid registration, Histological slices, Polyaffine transformations, Ordinary differential equations. [bibtex-entry]



2. J.-D. Boissonnat, R. Chaine, P. Frey, G. Malandain, S. Salmon, E. Saltel, and M. Thiriet. From arteriographies to computational flow in saccular aneurisms: the INRIA experience. Medical Image Analysis, 9(2):133-143, April 2005. HAL ID: hal-00017614. Keyword(s): 3D reconstruction, Aneurism, Finite element method, Mesh adaptation, Pulsatile flow. [Abstract] [bibtex-entry]



3. Pierre-Yves Bondiau, Gregoire Malandain, Stephane Chanalet, Pierre-Yves Marcy, Jean-Louis Habrand, Francois Fauchon, Philippe Paquis, Adel Courdi, Olivier Commowick, Isabelle Rutten, and Nicholas Ayache. Atlas-based automatic segmentation of MR images: validation study on the brainstem in radiotherapy context. Int J Radiat Oncol Biol Phys, 61(1):289-98, January 2005. Keyword(s): Algorithms, Anatomical Atlas, methods, Brain Neoplasms, pathology, Brain Stem, anatomy & histology, Humans, Image Interpretation Computer-Assisted, methods, Magnetic Resonance Imaging, methods, Medical Illustration, Observer Variation, Reproducibility of Results, Sensitivity and Specificity. [Abstract] [bibtex-entry]



4. Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Ron Kikinis, Ferenc Jolesz, Nicholas Ayache, and Simon Warfield. Robust Non-Rigid Registration to Capture Brain Shift from Intra-Operative MRI. IEEE Transactions on Medical Imaging, 24(11):1417-1427, Nov. 2005. Keyword(s): Non-rigid registration, intra-operative magnetic resonance imaging, finite element model, brain shift. [Abstract] [bibtex-entry]



5. Olivier Clatz, Maxime Sermesant, Pierre-Yves Bondiau, Hervé Delingette, Simon K. Warfield, Grégoire Malandain, and Nicholas Ayache. Realistic Simulation of the 3D Growth of Brain Tumors in MR Images Coupling Diffusion with Mass Effect. IEEE Transactions on Medical Imaging, 24(10):1334-1346, October 2005. Keyword(s): Tumor, brain, growth, model, simulation. [Abstract] [bibtex-entry]



6. H. Delingette and N. Ayache. Hepatic Surgery Simulation. Communications of the ACM, 48(2):31-36, February 2005. [bibtex-entry]



7. D. Ducreux, I. Huynh, P. Fillard, J. Renoux, M.C. Petit-Lacour, K. Marsot-Dupuch, and P. Lasjaunias. Brain MR Diffusion Tensor Imaging and Fibre Tracking to Differentiate Between Two Diffuse Axonal Injuries. Neuroradiology, 47(8):604-608, August 2005. HAL ID: inria-00502656. [bibtex-entry]



8. D. Facon, A. Ozanne, P. Fillard, J.-F. Lepeintre, C. Tournoux-Facon, and D. Ducreux. MR Diffusion Tensor Imaging and Fiber Tracking in Spinal Cord Compression. AJNR. American journal of neuroradiology, 26:1587-1594, 2005. HAL ID: inria-00502651. [bibtex-entry]



9. C. Forest, H. Delingette, and N. Ayache. Removing Tetrahedra from manifold tetrahedralisation : application to real-time surgical simulation. Medical Image Analysis, 9(2):113-122, April 2005. Keyword(s): Surgical simulation, Topological modifications, Manifold meshes. [Abstract] [bibtex-entry]



10. Céline Fouard and Grégoire Malandain. 3-D chamfer distances and norms in anisotropic grids. Image and Vision Computing, 23(2):143-158, February 2005. HAL ID: hal-00308886. Keyword(s): chamfer distance, anisotropic lattice, Farey triangulation. [Abstract] [bibtex-entry]



11. C. Germain, V. Breton, P. Clarysse, Y. Gaudeau, T. Glatard, E. Jeannot, Y. Legré, C. Loomis, I. Magnin, J. Montagnat, J.-M. Moureau, A. Osorio, X. Pennec, and R. Texier. Grid-Enabling Medical Image Analysis. Journal of Clinical Monitoring and Computing, 19(4-5):339-349, October 2005. HAL ID: inria-00288871. [bibtex-entry]



12. Grégoire Malandain and Mauricio Reyes. La tomographie en mouvement. Pour la science, 338:132-137, December 2005. [bibtex-entry]



13. J. Montagnat and H. Delingette. 4D Deformable Models with temporal constraints : application to 4D cardiac image segmentation. Medical Image Analysis, 9(1):87-100, February 2005. HAL ID: hal-00443361. [bibtex-entry]



14. V Muthurangu, D Atkinson, M Sermesant, M E Miquel, S Hegde, R Johnson, R Andriantsimiavona, A M Taylor, E Baker, R Tulloh, D Hill, and R S Razavi. Measurement of total pulmonary arterial compliance using invasive pressure monitoring and MR flow quantification during MR-guided cardiac catheterization. American journal of physiology. Heart and circulatory physiology, 289(3):1301-1306, September 2005. [Abstract] [bibtex-entry]



15. Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, and Nicholas Ayache. An augmented reality system to guide radio-frequency tumor ablation. Computer Animation and Virtual World (previously the Journal of Visualization and Computer Animation), 16(1):1-10, 2005. [bibtex-entry]



16. Xavier Pennec. Recaler pour mieux soigner. Pour la science, 338:126-131, December 2005. [bibtex-entry]



17. K. Rhode, M. Sermesant, D. Brogan, S. Hegde, J. Hipwell, P. Lambiase, E. Rosenthal, C. Bucknall, S. Qureshi, J. Gill, R. Razavi, and D. Hill. A system for real-time XMR guided cardiovascular intervention. IEEE Transactions on Medical Imaging, 24(11):1428-1440, 2005. [bibtex-entry]



18. M. Sermesant, K. Rhode, G. Sanchez-Ortiz, O. Camara, R. Andriantsimiavona, S. Hegde, D. Rueckert, P. Lambiase, C. Bucknall, E. Rosenthal, H. Delingette, D. Hill, N. Ayache, and R. Razavi. Simulation of Cardiac Pathologies using an Electromechanical Biventricular Model and XMR Interventional Imaging. Medical Image Analysis, 9(5):467-480, 2005. [bibtex-entry]



19. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. A Grid Service for the Interactive Use of a Parallel Non-Rigid Registration Algorithm of Medical Images. Methods of Information in Medicine, 44(2), 2005. Keyword(s): grid service, registration, non-rigid, parallel. [bibtex-entry]



20. Xavier Pennec, Alexis Roche, Pascal Cathier, and Nicholas Ayache. Non-Rigid MR/US Registration for Tracking Brain Deformations. In R.S. Blum and Zh. Liu, editors, Multi-Sensor Image Fusion and Its Applications, volume 26 of Signal Processing and Communications, chapter 4, pages 107-143. CRC Press - Taylor and Francis, July 2005. Keyword(s): registration, matching, ultrasound, motion tracking, deformations, magnetic resonance, correlation ratio, robust estimation, multimodal. [bibtex-entry]



21. A. Pitiot, H. Delingette, and P.M. Thompson. Automated Image Segmentation: Issues and Applications. In Cornelius T. Leondes, editor, Medical Imaging Systems Technology, volume 3. World Scientific, 2005. [bibtex-entry]

1. J. Annese, A. Pitiot, I.D. Dinov, and A.W. Toga. A myelo-architectonic method for the structural classification of cortical areas. NeuroImage, 21(1):15-26, January 2004. Keyword(s): Myelo-architecture, Cerebral cortex, Cortical areas. [Abstract] [bibtex-entry]



2. Christophe Blondel, Régis Vaillant, Grégoire Malandain, and Nicholas Ayache. 3-D tomographic reconstruction of coronary arteries using a precomputed 4-D motion field. Physics in Medicine and Biology, 49(11):2197-2208, 2004. [bibtex-entry]



3. P.Y. Bondiau, G. Malandain, S. Chanalet, P.Y. Marcy, C. Foa, and N. Ayache. Traitement des images et radiothérapie. Cancer radiothérapie, 8(2):120-129, 2004. [Abstract] [bibtex-entry]



4. P. Cachier and N. Ayache. Isotropic energies, filters and splines for vectorial regularization. Journal of Mathematical Imaging and Vision, 20(3):251-265, May 2004. Keyword(s): vector field regularization, non-rigid registration, convolution filter, spline. [bibtex-entry]



5. H. Delingette. Réalité Virtuelle et Médecine. Centraliens, 552:17-18, February 2004. [bibtex-entry]



6. Miguel Angel González Ballester, Xavier Pennec, Marius George Linguraru, and Nicholas Ayache. Generalized Image Models and Their Application as Statistical Models of Images. Medical Image Analysis, 8(3):361-369, September 2004. [bibtex-entry]



7. Isabelle Klein, Jessica Dubois, Jean-François Mangin, Ferath Kherif, Guillaume Flandin, Jean-Baptiste Poline, Michel Denis, Stephen M. Kosslyn, and Denis LeBihan. Retinotopic organization of visual mental images as revealed by functional magnetic resonance imaging. Cognitive Brain Research, 22(1):26-31, December 2004. HAL ID: hal-00349680. [Abstract] [bibtex-entry]



8. C Lebrun, D Rey, S Chanalet, V Bourg, C Bensa, M Chatel, N Ayache, and G Malandain. The contribution of automatic anatomical matching of sequential brain MRI scans in the monitoring of multiple sclerosis lesions. Revue Neurologique, 160(8-9):805-10, September 2004. Note: In French. Keyword(s): multiple sclerosis. [Abstract] [bibtex-entry]



9. A. MacKenzie-Graham, E.F. Lee, I.D. Dinov, M. Bota, D.W. Shattuck, S. Ruffins, H. Yuan, F. Konstantinidis, A. Pitiot, Y. Ding, G. Hu, R.E. Jacobs, and A.W. Toga. A multimodal, multidimensional atlas of the C57BL/6J mouse brain. Journal of Anatomy, 204(2):93-102, February 2004. [Abstract] [bibtex-entry]



10. Grégoire Malandain, Éric Bardinet, Koen Nelissen, and Wim Vanduffel. Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations. NeuroImage, 23(1):111-127, September 2004. [Abstract] [bibtex-entry]



11. R.R. Peeters, P. Kornprobst, M. Nikolova, S. Sunaert, T. Vieville, G. Malandain, R. Deriche, O. Faugeras, M. Ng, and P. Van Hecke. The use of superresolution techniques to reduce slice thickness in functional MRI. International Journal of Imaging Systems and Technology, 14(3):131-138, 2004. Note: Special issue on High Resolution Image Reconstruction. Keyword(s): fMRI, Super-Resolution algorithm, SNR. [Abstract] [bibtex-entry]



12. A. Pitiot, H. Delingette, P. M. Thompson, and N. Ayache. Expert Knowledge Guided Segmentation System for Brain MRI. NeuroImage, 23(supplement 1):S85-S96, 2004. Note: Special Issue: Mathematics in Brain Imaging. [bibtex-entry]



13. M. Sermesant, K. Rhode, S. Hegde, G. Sanchez-Ortiz, D. Rueckert, P. Lambiase, C. Bucknall, D. Hill, and R. Razavi. Electromechanical Modelling of the Myocardium using XMR Interventional Imaging. Journal of Cardiovascular Magnetic Resonance, 6(1):123-125, 2004. Note: Abstract. [bibtex-entry]



14. Olivier Simon, Ferath Kherif, Guillaume Flandin, Jean-Baptiste Poline, Denis Rivière, Jean-François Mangin, Denis LeBihan, and Stanislas Dehaene. Automatized clustering and functional geometry of human parietofrontal networks for language, space, and number. NeuroImage, 23(3):1192-1202, November 2004. HAL ID: hal-00349681. [Abstract] [bibtex-entry]



15. Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, Hervé Delingette, and Jacques Marescaux. Traitement d'images médicales pour la planification, la simulation et l'aide intra-opératoire des actes chirurgicaux. La Revue de l'Electricité et de l'Electronique, pp 64-71, janvier 2004. [bibtex-entry]



16. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Grid Powered Nonlinear Image Registration with Locally Adaptive Regularization. Medical Image Analysis, 8(3):325-342, September 2004. Keyword(s): non-rigid registration, adaptive regularization, grid, parallel. [bibtex-entry]



17. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Grid-Enabled Non-Rigid Registration of Medical Images. Parallel Processing Letters, 14(2):197-216, 2004. Keyword(s): grid, non-rigid registration, parallel, cluster. [bibtex-entry]



18. H. Delingette and N. Ayache. Soft Tissue Modeling for Surgery Simulation. In N. Ayache, editor, Computational Models for the Human Body, Handbook of Numerical Analysis (Ed : Ph. Ciarlet), pages 453-550. Elsevier, 2004. [bibtex-entry]



19. Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, Hervé Delingette, Didier Mutter, and Jacques Marescaux. Traitements d'images médicales pour la planification, la simulation et l'aide intra-opératoire des actes chirurgicaux. In M. Faupel, P. Smigielski, and R. Grzymala, editors, Imagerie et Photonique pour les sciences du vivant et la médecine, pages 19-31. Edition Fontis Media, 2004. ISBN: 2-88476-005-9. [bibtex-entry]

1. N. Ayache. Epidaure: a Research Project in Medical Image Analysis, Simulation and Robotics at INRIA. IEEE Transactions on Medical Imaging, 22(10):1185-1201, October 2003. [bibtex-entry]



2. Pierre-Yves Bondiau, Grégoire Malandain, Pierre Chauvel, Frédérique Peyrade, Adel Courdi, Nicole Iborra, Jean-Pierre Caujolle, and Pierre Gastaud. Automatic three-dimensional model for protontherapy of the eye: Preliminary results. Medical Physics, 30(6):1013-1020, June 2003. [Abstract] [bibtex-entry]



3. Pascal Cachier, Eric Bardinet, Didier Dormont, Xavier Pennec, and Nicholas Ayache. Iconic Feature Based Nonrigid Registration: The PASHA Algorithm. Computer Vision and Image Understanding, 89(2-3):272-298, Feb.-march 2003. Note: Special Issue on Nonrigid Registration. Keyword(s): registration, matching, similarity measures, deformations. [bibtex-entry]



4. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Création d'un Modèle Biomécanique Spécifique du Cerveau par l'Analyse d'Images et son Application à la Neurochirurgie Stéréotaxique. Mécanique et Industrie, 4(4):429-433, 2003. Note: Numéro spécial CFM 2003. [bibtex-entry]



5. P Hellier, C Barillot, I Corouge, B Gibaud, G Le Goualher, D L Collins, A Evans, G Malandain, N Ayache, G E Christensen, and H J Johnson. Retrospective evaluation of intersubject brain registration. IEEE Transactions on Medical Imaging, 22(9):1120-30, September 2003. HAL ID: inria-00536383. [Abstract] [bibtex-entry]



6. Ferath Kherif, Jean-Baptiste Poline, Sébastien Meriaux, Habib Benali, Guillaume Flandin, and Matthew Brett. Group analysis in functional neuroimaging: selecting subjects using similarity measures. NeuroImage, 20(4):2197-2208, December 2003. HAL ID: cea-00371054. Keyword(s): fMRI, Group analysis, Multivariate analysis, Statistical analysis. [Abstract] [bibtex-entry]



7. Pierre-Jean Lahaye, Jean-Baptiste Poline, Guillaume Flandin, Silke Dodel, and Line Garnero. Functional connectivity: studying nonlinear, delayed interactions between BOLD signals. NeuroImage, 20(2):962-974, October 2003. Keyword(s): fMRI. [bibtex-entry]



8. J. Montagnat, M. Sermesant, H. Delingette, G. Malandain, and N. Ayache. Anisotropic filtering for model-based segmentation of 4D cylindrical echocardiographic images. Pattern Recognition Letters, 24(4-5):815-828, February 2003. Note: Special Issue on Ultrasonic Image Processing and Analysis. Keyword(s): anisotropic diffusion, 4D, Heart, segmentation, ultrasound, medical images, motion tracking. [bibtex-entry]



9. Xavier Pennec, Pascal Cachier, and Nicholas Ayache. Tracking Brain Deformations in Time-Sequences of 3D US Images. Pattern Recognition Letters, 24(4-5):801-813, February 2003. Note: Special Issue on Ultrasonic Image Processing and Analysis. Keyword(s): registration, matching, ultrasound, motion tracking, deformations. [bibtex-entry]



10. G. Picinbono, H. Delingette, and N. Ayache. Non-Linear Anisotropic Elasticity for Real-Time Surgery Simulation. Graphical Models, 65(5):305-321, September 2003. Keyword(s): journal, simulation. [bibtex-entry]



11. Maxime Sermesant, Clément Forest, Xavier Pennec, Hervé Delingette, and Nicholas Ayache. Deformable biomechanical models: Application to 4D cardiac image analysis. Medical Image Analysis, 7(4):475-488, December 2003. [bibtex-entry]



12. J. Yelnik, P. Damier, S. Demeret, D. Gervais, E. Bardinet, B.P. Bejjani, C. Francois, J.L. Houeto, I. Arnule, D. Dormont, D. Galanaud, B. Pidoux, P. Cornu, and Y. Agid. Localization of stimulating electrodes in patients with Parkinson disease by using a three-dimensional atlas-magnetic resonance imaging coregistration method. Journal of Neurosurgery, 99(1):89-99, July 2003. [Abstract] [bibtex-entry]

1. M. A. González Ballester, A. Zisserman, and M. Brady. Estimation of the Partial Volume Effect in MRI. Medical Image Analysis, 6(4):389-405, December 2002. [bibtex-entry]



2. P. Jannin, J.M. Fitzpatrick, D.J. Hawkes, X. Pennec, R. Shahidi, and M.W. Vannier. Validation of Medical Image Processing in Image-guided Therapy. IEEE Transactions on Medical Imaging, 21(12):1445-1449, December 2002. HAL ID: inserm-00331766. [bibtex-entry]



3. Carine Karachi, Chantal François, Karine Parain, Eric Bardinet, Dominique Tandé, Etienne Hirsch, and Jérôme Yelnik. Three-dimensional cartography of functional territories in the human striatopallidal complex by using calbindin immunoreactivity. Journal of Comparative Neurology, 450(2):122-134, August 2002. [Abstract] [bibtex-entry]



4. Ferath Kherif, Jean-Baptiste Poline, Guillaume Flandin, Habib Benali, Olivier Simon, Stanislas Dehaene, and Keith J. Worsley. Multivariate Model Specification for fMRI Data. NeuroImage, 16(4):1068-1083, August 2002. Keyword(s): fMRI, model selection, multivariate analysis. [bibtex-entry]



5. Grégoire Malandain and Jean-Daniel Boissonnat. Computing the Diameter of a Point Set. International Journal of Computational Geometry & Applications, 12(6):489-510, December 2002. Keyword(s): computational geometry, diameter, width, approximation, point sets, furthest neighbors, double normal. [Abstract] [bibtex-entry]



6. G. Picinbono, H. Delingette, and N. Ayache. Modèle déformable élastique non-linéaire pour la simulation de chirurgie en temps réel. Les Comptes Rendus de l'Académie des Sciences (CRAS), C.R. Biologies, 325(4):335-344, 2002. Keyword(s): journal, simulation. [bibtex-entry]



7. G. Picinbono, J-C. Lombardo, H. Delingette, and N. Ayache. Improving realism of a surgery simulator: linear anisotropic elasticity, complex interactions and force extrapolation. Journal of Visualisation and Computer Animation, 13(3):147-167, July 2002. Keyword(s): journal, simulation. [bibtex-entry]



8. Alain Pitiot, Paul M. Thompson, and Arthur W. Toga. Adaptive Elastic Segmentation of Brain MRI via Shape Model Guided Evolutionary Programming. IEEE Transactions on Medical Imaging, 21(8):910-923, August 2002. Keyword(s): MRI. [bibtex-entry]



9. S. Prima, S. Ourselin, and N. Ayache. Computation of the Mid-Sagittal Plane in 3D Brain Images. IEEE Transactions on Medical Imaging, 21(2):122-138, February 2002. Keyword(s): registration, matching. [bibtex-entry]



10. David Rey, Gérard Subsol, Hervé Delingette, and Nicholas Ayache. Automatic Detection and Segmentation of Evolving Processes in 3D Medical Images: Application to Multiple Sclerosis. Medical Image Analysis, 6(2):163-179, June 2002. Keyword(s): Automation, Brain, pathology, Human, Image Processing Computer-Assisted, methods, Imaging Three-Dimensional, methods, Magnetic Resonance Imaging, methods, Models Neurological, Multiple Sclerosis, diagnosis, Reproducibility of Results, Sensitivity and Specificity, Support Non-U.S. Gov't. [Abstract] [bibtex-entry]



11. N. Ayache. Medical Imaging Informatics. From Digital Anatomy to Virtual Scapels and Image Guided Therapy. In R Haux and C Kulikowski, editors, Medical Imaging Informatics (IMIA Yearbook of Medical Informatics). Schattauer Verlagsgesellschaft mbH, Stuttgart, 2002. ISBN: 3-7945-2193-5. [bibtex-entry]



12. G. Subsol, B. Mafart, A. Silvestre, and M.A. de Lumley. 3D Image Processing for the Study of the Evolution of the Shape of the Human Skull: Presentation of the Tools and Preliminary Results. In B. Mafart, H. Delingette, and G. Subsol, editors, Three-Dimensional Imaging in Paleoanthropology and Prehistoric Archaeology, pages 37-45. BAR International Series 1049, 2002. [bibtex-entry]

1. H. Delingette and J. Montagnat. Shape and Topology Constraints on Parametric Active Contours. Computer Vision and Image Understanding, 83(2):140-171, 2001. Keyword(s): journal, reconstruction. [bibtex-entry]



2. A. Guimond, A. Roche, N. Ayache, and J. Meunier. Multimodal Brain Warping Using the Demons Algorithm and Adaptative Intensity Corrections. IEEE Transactions on Medical Imaging, 20(1):58-69, 2001. Keyword(s): registration, matching, deformations. [Abstract] [bibtex-entry]



3. M.G. Linguraru and J.M. Brady. An Anisotropic Diffusion Approach for Early Detection of Breast Cancer. Acta Universitatis Cibiniensis, Technical Series, XLIII:49-60, 2001. [bibtex-entry]



4. Y. Machida, Y. Hamamura, M. A. González Ballester, S. Nozaki, K. Okamoto, S. Uchizono, N. Ichinose, Y. Kassai, H. Kanazawa, and Y. Usui. Development of MR Parallel Imaging, SPEEDER (in Japanese). Medical Review, 83:52-58, November 2001. [bibtex-entry]



5. O. Migneco, M. Benoit, P.M. Koulibaly, I. Dygai, C. Bertogliati, P. Desvignes, Ph. Robert, G. Malandain, F. Bussière, and J. Darcourt. Perfusion brain SPECT and Statistical Parametric Mapping analysis indicate that apathy is a cingulate syndrome: a study in Alzheimer's disease and non-demented patients. NeuroImage, 13(5):896-902, 2001. Keyword(s): apathy, cingulate, statistical parametric mapping, ECD. [Abstract] [bibtex-entry]



6. J. Montagnat, H. Delingette, and N. Ayache. A review of deformable surfaces: topology, geometry and deformation. Image and Vision Computing, 19(14):1023-1040, December 2001. Keyword(s): journal, reconstruction. [bibtex-entry]



7. Sébastien Ourselin, Alexis Roche, Gérard Subsol, Xavier Pennec, and Nicholas Ayache. Reconstructing a 3D Structure from Serial Histological Sections. Image and Vision Computing, 19(1-2):25-31, January 2001. HAL ID: cea-00333669. Keyword(s): registration, matching, histology. [bibtex-entry]



8. Alexis Roche, Xavier Pennec, Grégoire Malandain, and Nicholas Ayache. Rigid Registration of 3D Ultrasound with MR Images: a New Approach Combining Intensity and Gradient Information. IEEE Transactions on Medical Imaging, 20(10):1038-1049, October 2001. HAL ID: cea-00333699. Keyword(s): registration, ultrasound, magnetic resonance, correlation ratio, robust estimation, multimodal. [Abstract] [bibtex-entry]



9. L Soler, H Delingette, G Malandain, J Montagnat, N Ayache, C Koehl, O Dourthe, B Malassagne, M Smith, D Mutter, and J Marescaux. Fully automatic anatomical, pathological, and functional segmentation from CT scans for hepatic surgery. Comput Aided Surg, 6(3):131-42, 2001. Keyword(s): Human, Image Processing Computer-Assisted, methods, Liver, anatomy & histology, Support Non-U.S. Gov't, Surgery Computer-Assisted, Tomography X-Ray Computed. [Abstract] [bibtex-entry]

1. N. Ayache. Imagerie et robotique médicales: du microscope informatique au simulateur de chirurgie. Technique et Science Informatiques, 19(1), January 2000. [bibtex-entry]



2. S. Cotin, H. Delingette, and N. Ayache. A Hybrid Elastic Model allowing Real-Time Cutting, Deformations and Force-Feedback for Surgery Training and Simulation. The Visual Computer, 16(8):437-452, 2000. Keyword(s): journal, simulation. [bibtex-entry]



3. J. Duncan and N. Ayache. Medical Image Analysis: Progress over two decades and the challenges ahead. IEEE Transactions on Pattern Analysis and Machine Intelligence, 22(1):85-106, 2000. [bibtex-entry]



4. M. A. González Ballester, A. Zisserman, and M. Brady. Segmentation and Measurement of Brain Structures in MRI Including Confidence Bounds. Medical Image Analysis, 4(3):189-200, 2000. [bibtex-entry]



5. A. Guimond, J. Meunier, and J.-P. Thirion. Average Brain Models: A Convergence Study. Computer Vision and Image Understanding, 77(2):192-210, 2000. Keyword(s): atlas. [bibtex-entry]



6. K. Krissian, G. Malandain, N. Ayache, R. Vaillant, and Y. Trousset. Model-Based Detection of Tubular Structures in 3D Images. Computer Vision and Image Understanding, 80(2):130-171, 2000. Keyword(s): filtering, vessel detection, multiscale analysis, segmentation. [Abstract] [bibtex-entry]



7. A. Roche, G. Malandain, and N. Ayache. Unifying Maximum Likelihood Approaches in Medical Image Registration. International Journal of Imaging Systems and Technology, 11(1):71-80, 2000. Note: Special Issue on 3D Imaging. HAL ID: cea-00333642. Keyword(s): registration, matching, similarity measures. [bibtex-entry]



8. L Soler, H Delingette, G Malandain, N Ayache, C Koehl, J M Clement, O Dourthe, and J Marescaux. An automatic virtual patient reconstruction from CT-scans for hepatic surgical planning. Stud Health Technol Inform, 70:316-22, 2000. Keyword(s): Computer Graphics, Computer Simulation, Hepatectomy, Human, Image Processing Computer-Assisted, Liver Diseases, radiography, Tomography X-Ray Computed, User-Computer Interface. [Abstract] [bibtex-entry]



9. J.-P. Thirion, S. Prima, G. Subsol, and N. Roberts. Statistical Analysis of Normal and Abnormal Dissymmetry in Volumetric Medical Images. Medical Image Analysis, 4(2):111-121, June 2000. HAL ID: inria-00073511. Keyword(s): Aphasia, pathology, Brain, anatomy & histology, Computer Simulation, Epilepsies Partial, pathology, Human, Image Processing Computer-Assisted, Imaging Three-Dimensional, Laterality, Magnetic Resonance Imaging, Male. [Abstract] [bibtex-entry]



10. Xavier Pennec, Nicholas Ayache, and Jean-Philippe Thirion. Landmark-based registration using features identified through differential geometry. In I. Bankman, editor, Handbook of Medical Imaging, chapter 31, pages 499-513. Academic Press, September 2000. Keyword(s): registration, matching, validation, uncertainty. [bibtex-entry]

1. N. Ayache and G. Subsol. El Cerebro in Cuatro Dimensiones. Mundo Cientifico, 203:30-33, July 1999. [bibtex-entry]



2. N. Ayache and G. Subsol. Le cerveau en quatre dimensions. La Recherche, 320:46-49, May 1999. [bibtex-entry]



3. S. Cotin, H. Delingette, and N. Ayache. Real-time elastic deformations of soft tissues for surgery simulation. IEEE Transactions on Visualization and Computer Graphics, 5(1):62-73, January-March 1999. Keyword(s): journal, simulation. [bibtex-entry]



4. H. Delingette. General Object Reconstruction based on Simplex Meshes. International Journal of Computer Vision, 32(2):111-146, September 1999. Keyword(s): journal, reconstruction. [bibtex-entry]



5. J.-L. Dugelay, K. Fintzel, S. Valente, and H. Delingette. Clonage de visage et spatialisation video : Outils pour la téléconférence virtuelle. Traitement du signal, 16(1):60-72, July 1999. Keyword(s): journal, reconstruction. [bibtex-entry]



6. S. Ourselin, C. Sattonnet, A. Roche, and G. Subsol. Automatic alignement of histological sections for 3D reconstruction and analysis. Analytical Cellular Pathology, 18(3):123, 1999. Note: Abstracts of the 1999 Annual Meeting of the Association Française de Cytométrie, Dijon, 12-15 October 1999. Keyword(s): registration, matching, histology, MRI. [bibtex-entry]



7. J.-P. Thirion and G. Calmon. Deformation Analysis to Detect and Quantify Active Lesions in Three-Dimensional Medical Image Sequences. IEEE Transactions on Medical Imaging, 18(5):429-441, 1999. Keyword(s): Lesion, mass effect, motion field analysis, multiple sclerosis, stereology, volume measurement. [bibtex-entry]



8. J. Webb, A. Guimond, N. Roberts, P. Eldridge, D. Chadwick, J. Meunier, and J.-P. Thirion. Automatic detection of hippocampal atrophy on magnetic resonance images. Magnetic Resonance Imaging, 17(8):1149-1161, April 1999. [bibtex-entry]

1. Nicholas Ayache. L'analyse automatique des images médicales, état de l'art et perspectives. Annales de l'Institut Pasteur, 9(1):13-21, avril--juin 1998. Note: Numéro spécial sur les progrès récents de l'imagerie médicale. [bibtex-entry]



2. N. Ayache, S. Cotin, H. Delingette, J.-M. Clément, J. Marescaux, and M. Nord. Simulation of Endoscopic Surgery. Journal of Minimally Invasive Therapy and Allied Technologies (MITAT), 7(2):71-77, July 1998. Keyword(s): journal, simulation. [bibtex-entry]



3. Eric Bardinet, Laurent D. Cohen, and Nicholas Ayache. A parametric deformable model to fit unstructured 3D data. Computer Vision and Image Understanding, 71(1):39-54, 1998. [bibtex-entry]



4. Serge Benayoun and Nicholas Ayache. Dense non-rigid motion estimation in sequences of medical images using differential constraints. International Journal of Computer Vision, 26(1):25-40, 1998. Keyword(s): registration, matching, deformations, motion tracking. [bibtex-entry]



5. J. Declerck, J. Feldmar, and N. Ayache. Definition of a four-dimensional continuous planispheric transformation for the tracking and the analysis of left-ventricle motion. Medical Image Analysis, 2(2):197-213, June 1998. Keyword(s): Motion tracking, Heart, 4D. [bibtex-entry]



6. H. Delingette. Towards Realistic Soft Tissue Modeling in Medical Simulation. Proceedings of the IEEE, pp 512-523, April 1998. Note: Special Issue on Surgery Simulation. Keyword(s): journal, simulation. [bibtex-entry]



7. Márta Fidrich. Iso-surface Extraction in $n$-D applied to Tracking Feature Curves across Scale. Image and Vision Computing, 16(8):545-556, 1998. [bibtex-entry]



8. Márta Fidrich and Jean-Philippe Thirion. Stability of Corner Points in Scale Space: The Effect of Small Non-Rigid Deformations. Computer Vision and Image Understanding, 72(1):72-83, 1998. [bibtex-entry]



9. G. Malandain and S. Fernández-Vidal. Euclidean Skeletons. Image and Vision Computing, 16(5):317-327, April 1998. [bibtex-entry]



10. J Marescaux, J M Clement, V Tassetti, C Koehl, S Cotin, Y Russier, D Mutter, H Delingette, and N Ayache. Virtual reality applied to hepatic surgery simulation: the next revolution. Annals of Surgery, 228(5):627-34, November 1998. Keyword(s): Computer Simulation, Digestive System Surgical Procedures, methods, Image Processing Computer-Assisted, Liver, surgery, Support Non-U.S. Gov't, journal, simulation. [Abstract] [bibtex-entry]



11. J Marescaux, J M Clement, M Vix, Y Russier, V Tassetti, D Mutter, S Cotin, and N Ayache. [A new concept in surgery of the digestive tract: surgical procedure assisted by computer, from virtual reality to telemanipulation]. Chirurgie, 123(1):16-24, February 1998. Note: In french. Keyword(s): Anatomy Cross-Sectional, Computer Simulation, English Abstract, Forecasting, Hepatectomy, instrumentation, Human, Image Processing Computer-Assisted, instrumentation, Liver Neoplasms, surgery, Phantoms Imaging, Robotics, instrumentation, Surgical Procedures Operative, trends, User-Computer Interface. [Abstract] [bibtex-entry]



12. J. Montagnat and H. Delingette. Globally constrained deformable models for 3D object reconstruction. Signal Processing, 71(2):173-186, 1998. Keyword(s): journal, reconstruction. [bibtex-entry]



13. Xavier Pennec. Toward a generic framework for recognition based on uncertain geometric features. Videre: Journal of Computer Vision Research, 1(2):58-87, 1998. Keyword(s): registration, matching, uncertainty. [bibtex-entry]



14. Xavier Pennec and Nicholas Ayache. A geometric algorithm to find small but highly similar 3D substructures in proteins. Bioinformatics, 14(6):516-522, 1998. Keyword(s): registration, matching, protein structure. [bibtex-entry]



15. Xavier Pennec and Nicholas Ayache. Uniform distribution, distance and expectation problems for geometric features processing. Journal of Mathematical Imaging and Vision, 9(1):49-67, July 1998. Note: A preliminary version appeared as INRIA Research Report 2820, March 1996.HAL ID: inria-00073871. Keyword(s): statistics, geometry, Riemannian geometry. [bibtex-entry]



16. L. Robert and G. Malandain. Fast Binary Image Processing Using Binary Decision Diagrams. Computer Vision and Image Understanding, 72(1):1-9, October 1998. [bibtex-entry]



17. L. Soler, G. Malandain, and H. Delingette. Segmentation automatique : application aux angioscanners 3D du foie. Traitement du signal, 15(5):411-431, 1998. Keyword(s): journal, reconstruction. [bibtex-entry]



18. G. Subsol, J.-Ph. Thirion, and N. Ayache. A Scheme for Automatically Building 3D Morphometric Anatomical Atlases: application to a Skull Atlas. Medical Image Analysis, 2(1):37-60, 1998. Keyword(s): registration, matching, atlas, deformations, Algorithms, Anatomy Artistic, methods, Comparative Study, Craniofacial Abnormalities, pathology, Diagnosis Computer-Assisted, methods, Human, Medical Illustration, Skull, anatomy & histology. [Abstract] [bibtex-entry]



19. J.-P. Thirion. Image matching as a diffusion process: an analogy with Maxwell's demons. Medical Image Analysis, 2(3):243-260, 1998. Keyword(s): registration, matching, deformations, Algorithms, Animals, Brain, anatomy & histology, Computer Simulation, Diagnostic Imaging, methods, Dogs, Heart, anatomy & histology, Human, Image Processing Computer-Assisted, methods, Models Theoretical, Thermodynamics. [Abstract] [bibtex-entry]



20. Nicholas Ayache, Stephane Cotin, and Hervé Delingette. Surgery Simulation with visual and haptic feedback. In Y. Shirai and S. Hirose, editors, Robotics Research, the Eigth International Symposium, pages 311-316. Springer, 1998. Keyword(s): workshop, simulation. [bibtex-entry]



21. G. Subsol. Crest Lines for Curve Based Warping. In A. W. Toga, editor, Brain Warping, chapter 13, pages 225-246. Academic Press, 1998. [bibtex-entry]



22. J.-P. Thirion. Diffusing Models and Applications. In A. W. Toga, editor, Brain Warping, chapter 9, pages 143-155. Academic Press, 1998. Keyword(s): registration, matching. [bibtex-entry]

1. P Chauvel, W Sauerwein, N Bornfeld, W Friedrichs, N Brassart, A Courdi, J Herault, J P Pignol, P Y Bondiau, and G Malandain. Clinical and technical requirements for proton treatment planning of ocular diseases. The SERAG (South Europe Radiotherapy Group). Front Radiat Ther Oncol, 30:133-42, 1997. Keyword(s): Comparative Study, Conjunctival Neoplasms, diagnosis, Dose-Response Relationship Radiation, Follow-Up Studies, Fundus Oculi, Human, Image Processing Computer-Assisted, Magnetic Resonance Imaging, Melanoma, diagnosis, Neoplasm Recurrence Local, diagnosis, Predictive Value of Tests, Protons, therapeutic use, Radiotherapy Planning Computer-Assisted, methods, Retrospective Studies, Tomography X-Ray Computed, Treatment Outcome, Uveal Neoplasms, diagnosis. [bibtex-entry]



2. S. Cotin, H. Delingette, N. Ayache, J.M. Clement, J. Marescaux, and M. Nord. Simulation Active de Chirurgie Endoscopique. Revue Européenne de Technologie Biomédicale (RBM), 19(5):167-172, 1997. Keyword(s): journal, simulation. [bibtex-entry]



3. J. Declerck, J. Feldmar, M.L. Goris, and F. Betting. Automatic registration and alignment on a template of cardiac stress & rest SPECT reoriented images. IEEE Transactions on Medical Imaging, 16(6):727-737, 1997. Keyword(s): registration, matching, deformations. [bibtex-entry]



4. H. Delingette. Réalité virtuelle et médecine. Revue de la société des électriciens et des électroniciens (REE), 8:43-45, September 1997. Keyword(s): journal, simulation. [bibtex-entry]



5. J. Feldmar, N. Ayache, and F. Betting. 3D-2D projective registration of free-form curves and surfaces. Journal of Computer Vision and Image Understanding, 65(3):403-424, 1997. [bibtex-entry]



6. J. Feldmar, J. Declerck, G. Malandain, and N. Ayache. Extension of the ICP Algorithm to Non-Rigid Intensity-Based Registration of 3D Volumes. Computer Vision and Image Understanding, 66(2):193-206, May 1997. Keyword(s): registration, matching, deformations. [bibtex-entry]



7. Alexandre Guimond, Gérard Subsol, and Jean-Philippe Thirion. Automatic MRI Database Exploration and Applications. International Journal of Pattern Recognition and Artificial Intelligence, 11(8):1345-1366, December 1997. [bibtex-entry]



8. André Guéziec, Xavier Pennec, and Nicholas Ayache. Medical Image Registration using Geometric Hashing. IEEE Computational Science and Engineering, 4(4):29-41, Oct-Dec 1997. Note: Special issue on Geometric Hashing. Keyword(s): registration, matching. [bibtex-entry]



9. J Marescaux, J M Clement, M Nord, Y Russier, V Tassetti, D Mutter, S Cotin, and N Ayache. [A new concept in digestive surgery: the computer assisted surgical procedure, from virtual reality to telemanipulation]. Bull Acad Natl Med, 181(8):1609-21, November 1997. Keyword(s): review, survey, review, survey, Computer Simulation, Digestive System Surgical Procedures, English Abstract, Human, Telemedicine, User-Computer Interface. [Abstract] [bibtex-entry]



10. Xavier Pennec and Jean-Philippe Thirion. A Framework for Uncertainty and Validation of 3D Registration Methods based on Points and Frames. International Journal of Computer Vision, 25(3):203-229, December 1997. Keyword(s): registration, matching, uncertainty, statistics, validation. [bibtex-entry]



11. L Picard, E Maurincomme, M Soderman, J Feldmar, R Anxionnat, L Launay, K Ericson, G Malandain, S Bracard, E Kerrien, O Flodmark, and N Ayache. X-ray angiography in stereotactic conditions: techniques and interest for interventional neuroradiology. Stereotact Funct Neurosurg, 68(1-4 Pt 1):117-20, 1997. Keyword(s): Angiography Digital Subtraction, methods, Carotid Arteries, anatomy & histology, Cerebral Angiography, methods, Human, Image Enhancement, Magnetic Resonance Angiography, methods, Radiology Interventional, methods, Stereotaxic Techniques. [Abstract] [bibtex-entry]



12. G. Quatrehomme, S. Cotin, G. Subsol, H. Delingette, Y. Garidel, G. Grévin, and M. Fidrich. A Fully Three-Dimensional Method for Facial Reconstruction Based on Deformable Models. Journal of Forensic Sciences, 42(4):649-652, July 1997. Keyword(s): journal, medical. [bibtex-entry]



13. G. Subsol, N. Roberts, M. Doran, and J.-Ph. Thirion. Automatic Analysis of Cerebral Atrophy. Magnetic Resonance Imaging, 15(8):917-927, 1997. [bibtex-entry]



14. J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, Jr., R. M. Kessler, R. J. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes, P. Suetens, D. Vandermeulen, P. A. van den Elsen, S. Napel, T. S. Sumanaweera, B. Harkness, P. F. Hemler, D. L. G. Hill, D. J. Hawkes, C. Studholme, J. B. A. Maintz, M. A. Viergever, G. Malandain, X. Pennec, M. E. Noz, G. Q. Maguire, Jr., M. Pollack, C. A. Pelizzari, R. A. Robb, D. Hanson, and R. P. Woods. Comparison and evaluation of retrospective intermodality brain image registration techniques. Journal of Computer Assisted Tomography, 21(4):554-566, 1997. Keyword(s): registration, matching, multimodal, validation, uncertainty. [Abstract] [bibtex-entry]

1. N Ayache. Analyzing 3D images of the brain. NeuroImage, 4(3 Pt 2), December 1996. Keyword(s): Brain Mapping, Computer Graphics, Human, Image Processing Computer-Assisted, Robotics, Software, User-Computer Interface. [bibtex-entry]



2. E. Bardinet, L.D. Cohen, and N. Ayache. Tracking and motion analysis of the left ventricle with deformable superquadrics. Medical Image Analysis, 1(2), 1996. Note: Also INRIA Research Report RR-2797, INRIA Sophia-Antipolis, February 1996. [bibtex-entry]



3. S Cotin, H Delingette, M Bro-Nielsen, N Ayache, J M Clement, V Tassetti, and J Marescaux. Geometric and physical representations for a simulator of hepatic surgery. Stud Health Technol Inform, 29:139-51, 1996. Keyword(s): Computer Simulation, Education Medical, Human, Image Processing Computer-Assisted, Liver, anatomy & histology, Support Non-U.S. Gov't, User-Computer Interface. [Abstract] [bibtex-entry]



4. J. Feldmar and N. Ayache. Rigid, Affine and Locally Affine Registration of Free-Form Surfaces. International Journal of Computer Vision, 18(2):99-120, May 1996. Keyword(s): matching, registration, deformations. [bibtex-entry]



5. C. Nastar and N. Ayache. Frequency-based Non-rigid Motion Analysis: Application to Four Dimensional Medical Images. IEEE Transactions on Pattern Analysis and Machine Intelligence, 18(11):1067-1079, novembre 1996. [bibtex-entry]



6. N. Roberts, G. Subsol, J.-Ph. Thirion, M. Puddephat, and G. W. Whitehouse. Automatic Analysis of Deformation of the Cerebral Ventricles. Magnetic Resonance Materials in Physics, Biology and Medicine, 4(2):62-63, 1996. [bibtex-entry]



7. G. Subsol, J.-Ph. Thirion, and N. Ayache. Construction automatique d'atlas anatomiques morphométriques à partir d'images médicales tridimensionnelles : application à un atlas du crâne. Traitement du signal, 13(6):651-674, 1996. [bibtex-entry]



8. J.-P. Thirion. New Feature Points based on Geometric Invariants for 3D Image Registration. International Journal of Computer Vision, 18(2):121-137, May 1996. [bibtex-entry]



9. J.-P. Thirion. The Extremal Mesh and the Understanding of 3D Surfaces. International Journal of Computer Vision, 19(2):115-128, August 1996. [bibtex-entry]



10. H. Delingette and G. Subsol. L'Image dans la Réalité Virtuelle. In Nouvelles Interfaces Homme-Machine, number 18 of ARAGO. Observatoire Français des Techniques Avancées, 1996. Keyword(s): chapter-book, simulation. [bibtex-entry]

1. N. Ayache. Medical Computer Vision, Virtual Reality and Robotics. Image and Vision Computing, 13(4):295-313, May 1995. [bibtex-entry]



2. G. Bertrand and G. Malandain. A note on ``Building skeleton models via 3D medial surface-axis thinning algorithms''. Graphical Models and Image Processing, 57(6):537-538, November 1995. [bibtex-entry]



3. M. Hébert, H. Delingette, and K. Ikeuchi. Shape Representation and Image Segmentation Using Deformable Surfaces. IEEE Transactions on Pattern Analysis and Machine Intelligence, 17(7), June 1995. Keyword(s): journal, recognition. [bibtex-entry]



4. O. Monga and S. Benayoun. Using partial derivatives of 3D images to extract typical surface features. Computer Vision and Image Understanding, 61(2):171-189, March 1995. Note: Aussi rapport de recherche INRIA numero 1599, Février 1992. [Abstract] [bibtex-entry]



5. J.-P. Thirion and A Gourdon. Computing the Differential Characteristics of Isointensity Surfaces. Journal of Computer Vision and Image Understanding, 61(2):190-202, March 1995. [bibtex-entry]



6. N. Ayache, P. Cinquin, I. Cohen, L. D. Cohen, I. L. Herlin, F. Leitner, and O. Monga. Segmentation of Complex 3D medical Objects: a challenge and a requirement for computer assisted surgery planning and performing. In Computer Integrated Surgery. MIT-Press, 1995. HAL ID: inria-00532673. [bibtex-entry]

1. G. Bertrand and G. Malandain. A new characterization of three-dimensional simple points. Pattern Recognition Letters, 15(2):169-175, February 1994. [bibtex-entry]



2. A. Guéziec and N. Ayache. Smoothing and Matching of 3-D Space Curves. International Journal of Computer Vision, 12(1):79-104, January 1994. [bibtex-entry]



3. G. Malandain, S. Fernández-Vidal, and J.-M. Rocchisani. Mise en correspondance d'objets 3D par une approche mécanique : application aux images médicales multimodales. Traitement du signal, 11(6):541-558, 1994. [bibtex-entry]



4. J.-P. Thirion. Direct Extraction of Boundaries from Computed Tomography Scans. IEEE Transactions on Medical Imaging, 13(2):322-328, June 1994. [bibtex-entry]

1. Laurent D. Cohen and Isaac Cohen. Finite Element Methods for active contour models and balloons from 2-D to 3-D. IEEE Transactions on Pattern Analysis and Machine Intelligence, 15(11), November 1993. [bibtex-entry]



2. G. Malandain, G. Bertrand, and N. Ayache. Topological segmentation of discrete surfaces. International Journal of Computer Vision, 10(2):183-197, 1993. [bibtex-entry]



3. N. Ayache. Computer Vision Applied to 3D Medical Images: Results, Trends and Future Challenges. In T. Kanade and R. Paul, editors, 6th Int. Symposium on Robotics Research. MIT-Press, 1993. Note: Available as INRIA Research Report 2050. [bibtex-entry]



4. Chahab Nastar and Nicholas Ayache. A New Physically Based Model for Efficient Tracking and Analysis of Deformations. In Geometric Reasoning - from Perception to Action, Lecture notes in computer science. Springer, 1993. [bibtex-entry]

1. I. Cohen, L.D. Cohen, and N. Ayache. Using deformable surfaces to segment 3-D images and infer differential structures. Computer Vision, Graphics, and Image Processing: Image Understanding, 56(2):242-263, 1992. [bibtex-entry]



2. H. Delingette, M. Hébert, and K. Ikeuchi. Shape Representation and Image Segmentation using deformable surfaces. Image and Vision Computing, 10(3):132-144, April 1992. Keyword(s): journal, reconstruction. [bibtex-entry]



3. A. Guéziec and N. Ayache. Lissage et reconnaissance de courbes gauches bruitées. Traitement du signal, 9(6), 1992. [bibtex-entry]



4. I.L. Herlin and N. Ayache. Extraction de traits caractéristiques dans des séquences d'images échocardiographiques. Technique et Science Informatiques, 11(4), 1992. [bibtex-entry]



5. Isabelle L. Herlin and Nicholas Ayache. Feature Extraction and analysis methods for sequences of ultrasound images. Image and Vision Computing, 10(10):673-682, 1992. [bibtex-entry]



6. O. Monga, N. Ayache, and P. Sander. Using uncertainty to link edge detection and local surface modelling. Image and Vision Computing, 10(6):673-682, Août 1992. [bibtex-entry]



7. Olivier Monga, Peter Sander, and Nicholas Ayache. From Voxel to Intrinsic Surface Features. Image and Vision Computing, 10(6):403-417, 1992. [bibtex-entry]



8. J.-Ph. Thirion. Realistic 3D Simulation of Shapes and Shadows for Image Processing. Computer Vision, Graphics and Image Processing, pp 82-90, January 1992. [bibtex-entry]



9. J.-Ph. Thirion. Segmentation of Tomographic Data without Image Reconstruction. IEEE Transactions on Medical Imaging, pp 102-110, March 1992. [bibtex-entry]



10. N. Ayache, I. Cohen, and I.L. Herlin. Medical Image Tracking. In Active Vision, Andrew Blake and Alan Yuille, chapter 17. MIT Press, 1992. Note: In press. [bibtex-entry]

1. Nicholas Ayache and Francis Lustman. Trinocular Stereovision for Robotics. IEEE Transactions on Pattern Analysis and Machine Intelligence, 13(1), 1991. [bibtex-entry]



2. O. Monga, R. Deriche, G. Malandain, and J.-P. Cocquerez. Recursive filtering and edge tracking: two primary tools for 3-D edge detection. Image and Vision Computing, 9(4):203-214, August 1991. [bibtex-entry]

1. J.-M Rocchisani, O. Monga, R. Deriche, and G. Malandain. Automatic multidimensional segmentation of nuclear medicine images using fast recursive filters. European Journal of Nuclear Medicine, 16:419, 1990. [bibtex-entry]

1. Nicholas Ayache and Olivier Faugeras. Maintaining Representations of the Environment of a Mobile Robot. International Journal of Robotics and Automation, 5(6):804-819, 1989. [bibtex-entry]

1. Nicholas Ayache and Olivier Faugeras. Building, registrating and fusing noisy visual maps. International Journal of Robotics Research, 7(6):45-65, 1988. [bibtex-entry]

1. Nicholas Ayache and Bernard Faverjon. Efficient Registration of stereo images by matching graph descriptions of edge segments. International Journal of Computer Vision, pp 107-131, 1987. [bibtex-entry]

1. Nicholas Ayache and Olivier Faugeras. HYPER: a new approach for the recognition and positioning of 2D objects. IEEE Transactions on Pattern Analysis and Machine Intelligence, 8(1):44-54, 1986. [bibtex-entry]

This material is presented to ensure timely dissemination of scholarly and technical work. Copyright and all rights therein are retained by authors or by other copyright holders. All person copying this information are expected to adhere to the terms and constraints invoked by each author's copyright. In most cases, these works may not be reposted without the explicit permission of the copyright holder.

Les documents contenus dans ces répertoires sont rendus disponibles par les auteurs qui y ont contribué en vue d'assurer la diffusion à temps de travaux savants et techniques sur une base non-commerciale. Les droits de copie et autres droits sont gardés par les auteurs et par les détenteurs du copyright, en dépit du fait qu'ils présentent ici leurs travaux sous forme électronique. Les personnes copiant ces informations doivent adhérer aux termes et contraintes couverts par le copyright de chaque auteur. Ces travaux ne peuvent pas être rendus disponibles ailleurs sans la permission explicite du détenteur du copyright.

This document was translated from BibT_EX by bibtex2html