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Publications of Alexis Roche

Thesis

  1. Alexis Roche. Recalage d'images médicales par inférence statistique. Thèse de sciences, Université de Nice Sophia-Antipolis, February 2001. Keyword(s): registration, matching, similarity measures, medical images, statistics, optimization, correlation ratio, mutual information. [bibtex-entry]


Articles in journal, book chapters

  1. Xavier Pennec, Alexis Roche, Pascal Cathier, and Nicholas Ayache. Non-Rigid MR/US Registration for Tracking Brain Deformations. In R.S. Blum and Zh. Liu, editors, Multi-Sensor Image Fusion and Its Applications, volume 26 of Signal Processing and Communications, chapter 4, pages 107-143. CRC Press - Taylor and Francis, July 2005. Keyword(s): registration, matching, ultrasound, motion tracking, deformations, magnetic resonance, correlation ratio, robust estimation, multimodal. [bibtex-entry]


  2. A. Guimond, A. Roche, N. Ayache, and J. Meunier. Multimodal Brain Warping Using the Demons Algorithm and Adaptative Intensity Corrections. IEEE Transactions on Medical Imaging, 20(1):58-69, 2001. Keyword(s): registration, matching, deformations. [Abstract] [bibtex-entry]


  3. Sébastien Ourselin, Alexis Roche, Gérard Subsol, Xavier Pennec, and Nicholas Ayache. Reconstructing a 3D Structure from Serial Histological Sections. Image and Vision Computing, 19(1-2):25-31, January 2001. Keyword(s): registration, matching, histology. [bibtex-entry]


  4. Alexis Roche, Xavier Pennec, Grégoire Malandain, and Nicholas Ayache. Rigid Registration of 3D Ultrasound with MR Images: a New Approach Combining Intensity and Gradient Information. IEEE Transactions on Medical Imaging, 20(10):1038-1049, October 2001. Keyword(s): registration, ultrasound, magnetic resonance, correlation ratio, robust estimation, multimodal. [Abstract] [bibtex-entry]


  5. A. Roche, G. Malandain, and N. Ayache. Unifying Maximum Likelihood Approaches in Medical Image Registration. International Journal of Imaging Systems and Technology, 11(1):71-80, 2000. Note: Special Issue on 3D Imaging. Keyword(s): registration, matching, similarity measures. [bibtex-entry]


  6. S. Ourselin, C. Sattonnet, A. Roche, and G. Subsol. Automatic alignement of histological sections for 3D reconstruction and analysis. Analytical Cellular Pathology, 18(3):123, 1999. Note: Abstracts of the 1999 Annual Meeting of the Association Française de Cytométrie, Dijon, 12-15 October 1999. Keyword(s): registration, matching, histology, MRI. [bibtex-entry]


Conference articles

  1. Guillaume Flandin, Xavier Pennec, Alexis Roche, Will Penny, Nicholas Ayache, and Jean-Baptiste Poline. Multi-subject anatomo-functional classification for activation studies. In NeuroImage (HBM'04), Budapest, Hungary, 2004. [bibtex-entry]


  2. Alexis Roche, Ferath Kherif, Guillaume Flandin, and Jean-Baptiste Poline. Should fMRI data be analyzed using a single BOLD response model across regions?. In Tomas Paus, Ed Bullmore, and Jonathan D. Cohen, editors, NeuroImage (HBM'03), New York, USA, 2003. Academic Press. Keyword(s): fMRI. [bibtex-entry]


  3. Eric Bardinet, Pascal Cathier, Alexis Roche, Nicholas Ayache, and Didier Dormont. A posteriori validation of pre-operative planning in functional neurosurgery by quantification of brain pneumocephalus. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 323-330, September 2002. Springer. Keyword(s): functional neurosurgery. [bibtex-entry]


  4. Didier Dormont, Eric Bardinet, Alexis Roche, Pascal Cachier, François Bonneville, Nicholas Ayache, Philippe Cornu, and Claude Marsault. Study of per-operative pneumocephalus during functional stereotactic procedures using automated registration algorithms of pre and immediate post operative 3D MR acquisitions. In XVIIth Symposium Neuroradiologicum, Paris, August 2002. [bibtex-entry]


  5. E. Bardinet, A.C.F Colchester, A. Roche, Y. Zhu, Y. He, S. Ourselin, B. Nailon, S.A. Hojjat, J. Ironside, S. Al-Sarraj, N. Ayache, and J. Wardlaw. Registration of Reconstructed Post Mortem Optical Data with MR Scans of the Same Patient. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 957-965, October 2001. Keyword(s): registration, matching, histology. [bibtex-entry]


  6. H. Delingette, E. Bardinet, D. Rey, J-D. Lemarechal, J. Montagnat, S. Ourselin, A. Roche, D. Dormont, J. Yelnik, and N. Ayache. YAV++: a Software Platform for Medical Image Processing and Visualization. In Workshop on Interactive Medical Image Visualization and Analysis satellite symposia of MICCAI, IMIVA'01, Utrecht, The Netherlands, October 2001. [bibtex-entry]


  7. Sébastien Granger, Xavier Pennec, and Alexis Roche. Rigid Point-Surface Registration Using an EM variant of ICP for Computer Guided Oral Implantology. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 752-761, October 2001. Keyword(s): registration, matching, surface, odontology, validation, uncertainty. [bibtex-entry]


  8. S. Ourselin, E. Bardinet, D. Dormont, G. Malandain, A. Roche, N. Ayache, D. Tandé, K. Parain, and J. Yelnik. Fusion of histological sections and MR images: towards the construction of an atlas of the human basal ganglia. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 743-751, October 2001. Keyword(s): registration, matching, human brain atlas, histology, MRI. [bibtex-entry]


  9. Xavier Pennec, Nicholas Ayache, Alexis Roche, and Pascal Cachier. Non-rigid MR/US registration for tracking brain deformations. In IEEE Computer Society Press, editor, Proc of Int. Workshop on Medical Imaging and Augmented Reality (MIAR 2001), 10-12 June 2001, Shatin, Hong Kong, pages 79-86, June 2001. Keyword(s): registration, matching, motion tracking, multimodal, ultrasound, magnetic resonance, deformations. [bibtex-entry]


  10. A. C. F. Colchester, S. Ourselin, Y. Zhu, E. Bardinet, Y. He, A. Roche, S. Al-Sarraj, B. Nailon, J. Ironside, and N. Ayache. 3-D Reconstruction of Macroscopic Optical Brain Slice Images. In A.M. DiGioia and S. Delp, editors, Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery (MICCAI 2000), volume 1935 of Lectures Notes in Computer Science, Pittsburgh, Pennsylvanie USA, octobre 11-14 2000. Springer. Keyword(s): registration, matching, histology, MRI. [bibtex-entry]


  11. O. Migneco, G. Malandain, A. Roche, I. Dygai, F. Bussière, N. Ayache, and J. Darcourt. Absolute calibration of HMPAO SPECT using Xenon-133. In European Association of Nuclear Medicine Meeting, Paris, France, August 2000. Note: European Journal of Nuclear Medecine 27(8):967. [bibtex-entry]


  12. S. Ourselin, A. Roche, S. Prima, and N. Ayache. Block Matching: A General Framework to Improve Robustness of Rigid Registration of Medical Images. In A.M. DiGioia and S. Delp, editors, Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery (MICCAI 2000), volume 1935 of Lectures Notes in Computer Science, Pittsburgh, Penn, USA, pages 557-566, octobre 11-14 2000. Springer. Keyword(s): registration, matching, histology, MRI. [bibtex-entry]


  13. A. Roche, A. Guimond, N. Ayache, and J. Meunier. Multimodal Elastic Matching of Brain Images. In Computer Vision - ECCV 2000, volume 1843 of LNCS, Dublin, Irlande, pages 511-527, June 2000. Springer. [bibtex-entry]


  14. A. Roche, X. Pennec, M. Rudolph, D. P. Auer, G. Malandain, S. Ourselin, L. M. Auer, and N. Ayache. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. In A.M. DiGioia and S. Delp, editors, Proc. of the 3rd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'00), volume 1935 of LNCS, Pittsburgh, Pennsylvanie, USA, pages 567-577, October 11-14 2000. Note: Published in IEEE TMI 20(10), oct. 2001, p. 25-31. Keyword(s): registration, matching, multimodal, magnetic resonance, ultrasound, correlation ratio. [bibtex-entry]


  15. P.Y. Bondiau, G. Malandain, K. Benezery, A. Roche, R. Ferrand, D. Pontvert, J.L. Habrand, and J.N. Bruneton. Fusion Scanner / IRM entièrement automatique : perspective d'utilisation pour la radiothérapie. In Proc. du XIX Forum de Cancérologie, Paris, 31 mai- 2 juin 1999. [bibtex-entry]


  16. Sébastien Ourselin, Alexis Roche, Gérard Subsol, and Xavier Pennec. Automatic Alignment of Histological Sections. In F. Pernus, S. Kovacic, H.S. Stiehl, and M.A. Viergever, editors, International Workshop on Biomedical Image Registration, WBIR'99, Bled (Slovénie), pages 1-13, August 1999. Keyword(s): registration, matching, histology. [bibtex-entry]


  17. A. Roche, G. Malandain, N. Ayache, and S. Prima. Towards a Better Comprehension of Similarity Measures used in Medical Image Registration. In C. Taylor and A. Colchester, editors, Proc. of 2nd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'99), volume 1679 of LNCS, Cambridge, UK, pages 555-566, September 1999. Springer. [bibtex-entry]


  18. Alexis Roche, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. The Correlation Ratio as a New Similarity Measure for Multimodal Image Registration. In Proc. of First Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'98), volume 1496 of LNCS, Cambridge, USA, pages 1115-1124, October 1998. Springer. Keyword(s): registration, matching, multimodal, correlation ratio. [bibtex-entry]


Internal reports

  1. Sébastien Granger, Xavier Pennec, and Alexis Roche. Rigid Point-Surface Registration using Oriented Points and an EM variant of ICP for Computer Guided Oral Implantology. Research report RR-4169, INRIA, 2001. Note: Published in MICCAI'01, Utrecht, Netherlands, LNCS 2208, p.752-761. Keyword(s): registration, matching, odontology, validation, uncertainty, surface. [bibtex-entry]


  2. Xavier Pennec and Alexis Roche. NM2: Non-Rigid matching MR/US second generation (Roboscope MMIT deliverable 25). Technical report, European project Roboscope, April 2000. Keyword(s): registration, matching, multimodal, magnetic resonance, ultrasound. [bibtex-entry]


  3. Alexis Roche, Xavier Pennec, Grégoire Malandain, Nicholas Ayache, and Sébastien Ourselin. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. Research report RR-3980, INRIA, July 2000. Note: Published in IEEE TMI 20(10), oct. 2001, p. 25-31. Keyword(s): registration, matching, multimodal, magnetic resonance, ultrasound, correlation ratio. [bibtex-entry]


  4. Alexandre Guimond, Alexis Roche, Nicholas Ayache, and Jean Meunier. Multimodal Brain Warping Using the Demons Algorithm and Adaptative Intensity Corrections. Research report RR-3796, INRIA, 1999. Keyword(s): registration, matching, deformations, multimodal. [bibtex-entry]


  5. A. Roche, G. Malandain, and N. Ayache. Unifying Maximum Likelihood Approaches in Medical Image Registration. Research report RR-3741, INRIA, July 1999. [bibtex-entry]


  6. Alexis Roche and Xavier Pennec. NM1: Non-Rigid matching MR/US first generation (Roboscope MMIT deliverable 18). Technical report, European project Roboscope, September 1999. [bibtex-entry]


  7. Sébastien Ourselin, Alexis Roche, Gérard Subsol, Xavier Pennec, and Christophe Sattonnet. Automatic Alignment of Histological Sections for 3D Reconstruction and Analysis. Research report RR-3595, INRIA, December 1998. Keyword(s): registration, histology. [bibtex-entry]


  8. Alexis Roche, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. Multimodal Image Registration by Maximization of the Correlation Ratio. Research report RR-3378, INRIA, August 1998. Note: Published in MICCAI'98, Cambridge, USA, LNCS 1496, p. 1115-1124. Keyword(s): registration, matching, multimodal, correlation ratio. [bibtex-entry]


Patents, standards

  1. Alexis Roche, Grégoire Malandain, Nicholas Ayache, and Xavier Pennec. Electronic device for automatic registration of images. US patent No US 6,539,127 B1, Mars 25, 2003, March 2003. [bibtex-entry]


  2. Alexis Roche, Grégoire Malandain, Nicholas Ayache, and Xavier Pennec. Dispositif électronique de recalage automatique d'images. French patent No FR 98 09649, Bulletin officiel de la propriété intellectuelle no 00/39 du Sept. 09 2000. European extension No 99401881, September 2000. [bibtex-entry]


Miscellaneous

  1. P.Y. Bondiau, G. Malandain, K. Benezery, A. Roche, R. Ferrand, D. Pontvert, J. L. Habrand, and J. N. Bruneton. Full Automatic CT Scan and MRI Matching : Use for Brain Tumor Radiotherapy. Proc of RSNA'99, 27 nov au 3 déc 1999. Note: Supplement to Radiology 1999; 213, 236. [bibtex-entry]



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