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Publications of Johan Montagnat

Thesis

  1. Johan Montagnat. Modéles déformables pour la segmentation et la modélisation d'images médicales 3D et 4D. Thèse de sciences, Université de Nice-Sophia Antipolis, December 1999. Keyword(s): thesis, reconstruction. [bibtex-entry]


Articles in journal, book chapters

  1. C. Germain-Renaud, V. Breton, P. Clarysse, B. Delhay, Y. Gaudeau, T. Glatard, E. Jannot, Y. Legré, Johan Montagnat, J.-M. Moureau, A. Osorio, Xavier Pennec, J. Schaerer, and R. Texier. Grid Analysis of Radiological Data. In Mario Cannataro, editor, Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine, and Healthcare, pages 363-391. IGI Global, 2009. Note: IGI-Global Medical Information Science Discoveries Research Award 2009. [bibtex-entry]


  2. Tristan Glatard, Johan Montagnat, David Emsellem, and Diane Lingrand. A Service-Oriented Architecture enabling dynamic services grouping for optimizing distributed workflows execution. Future Generation Computer Systems, 7(24):720-730, July 2008. [bibtex-entry]


  3. Tristan Glatard, Johan Montagnat, Diane Lingrand, and Xavier Pennec. Flexible and efficient workflow deployment of data-intensive applications on GRIDS with MOTEUR. International Journal of High Performance Computing Applications, 3(22):347-360, August 2008. Note: Special issue on Workflow Systems in Grid Environments. [bibtex-entry]


  4. Johan Montagnat, Tristan Glatard, Isabel Campos Plasencia, Francisco Castejon, Xavier Pennec, Giuliano Taffoni, Vladimir Voznesensky, and Claudio Vuerli. Workflow-based data parallel applications on the EGEE production grid infrastructure. Journal of Grid Computing, 6(4):369-383, December 2008. [bibtex-entry]


  5. C. Germain, V. Breton, P. Clarysse, Y. Gaudeau, T. Glatard, E. Jeannot, Y. Legré, C. Loomis, I. Magnin, J. Montagnat, J.-M. Moureau, A. Osorio, X. Pennec, and R. Texier. Grid-Enabling Medical Image Analysis. Journal of Clinical Monitoring and Computing, 19(4-5):339-349, October 2005. [bibtex-entry]


  6. J. Montagnat and H. Delingette. 4D Deformable Models with temporal constraints : application to 4D cardiac image segmentation. Medical Image Analysis, 9(1):87-100, February 2005. [bibtex-entry]


  7. J. Montagnat, M. Sermesant, H. Delingette, G. Malandain, and N. Ayache. Anisotropic filtering for model-based segmentation of 4D cylindrical echocardiographic images. Pattern Recognition Letters, 24(4-5):815-828, February 2003. Note: Special Issue on Ultrasonic Image Processing and Analysis. Keyword(s): anisotropic diffusion, 4D, Heart, segmentation, ultrasound, medical images, motion tracking. [bibtex-entry]


  8. H. Delingette and J. Montagnat. Shape and Topology Constraints on Parametric Active Contours. Computer Vision and Image Understanding, 83(2):140-171, 2001. Keyword(s): journal, reconstruction. [bibtex-entry]


  9. J. Montagnat, H. Delingette, and N. Ayache. A review of deformable surfaces: topology, geometry and deformation. Image and Vision Computing, 19(14):1023-1040, December 2001. Keyword(s): journal, reconstruction. [bibtex-entry]


  10. L Soler, H Delingette, G Malandain, J Montagnat, N Ayache, C Koehl, O Dourthe, B Malassagne, M Smith, D Mutter, and J Marescaux. Fully automatic anatomical, pathological, and functional segmentation from CT scans for hepatic surgery. Comput Aided Surg, 6(3):131-42, 2001. Keyword(s): Human, Image Processing Computer-Assisted, methods, Liver, anatomy & histology, Support Non-U.S. Gov't, Surgery Computer-Assisted, Tomography X-Ray Computed. [Abstract] [bibtex-entry]


  11. J. Montagnat and H. Delingette. Globally constrained deformable models for 3D object reconstruction. Signal Processing, 71(2):173-186, 1998. Keyword(s): journal, reconstruction. [bibtex-entry]


Conference articles

  1. B. Gibaud, F. Ahmad, C. Barillot, F. Michel, B. Wali, B. Batrancourt, M. Dojat, P. Girard, A. Gaignard, D. Lingrand, J. Montagnat, J. Rojas Balderrama, G. Malandain, X. Pennec, D. Godard, G. Kassel, and M. Pélégrini-Issac. A federated system for sharing and reuse of images and image processing tools in neuroimaging. In Proc. of Computer Assisted Radiology and Surgery 2011 (CARS 2011), June 2011. [bibtex-entry]


  2. Franck Michel, Alban Gaignard, Farooq Ahmad, Christian Barillot, Benedicte Batrancourt, Michel Dojat, Bernard Gibaud, Pascal Girard, David Godard, Gilles Kassel, Diane Lingrand, Grégoire Malandain, Johan Montagnat, Mélanie Pelegrini-Issac, Xavier Pennec, Javier Rojas Balderrama, and Bacem Wali. Grid-wide neuroimaging data federation in the context of the NeuroLOG project. In Proc. of HealthGrid Conference, volume 159 of Studies in Health Technology and Informatics, pages 112-123, 2010. [bibtex-entry]


  3. Tristan Glatard, Johan Montagnat, and Xavier Pennec. A Probabilistic Model to Analyse Workflow Performance on Production Grids. In 8th IEEE International Symposium on Cluster Computing and the Grid (CCGRID'08), pages 510-517, May 2008. IEEE. [bibtex-entry]


  4. Tristan Glatard, Johan Montagnat, and Xavier Pennec. A framework for evaluating the impact of compression on registration algorithms without gold standard. In International Conference on Image Processing, pages 2912-2915, 2008. [bibtex-entry]


  5. Tristan Glatard, Diane Lingrand, Johan Montagnat, and Michel Riveill. Impact of the execution context on Grid job performances. In International Workshop on Context-Awareness and Mobility in Grid Computing (WCAMG07), Rio de Janeiro, pages 713-718, May 2007. IEEE. [bibtex-entry]


  6. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Optimizing jobs timeouts on clusters and production grids. In International Symposium on Cluster Computing and the Grid (CCGrid), Rio de Janeiro, pages 100-107, May 2007. IEEE. [bibtex-entry]


  7. Clémentine Nemo, Tristan Glatard, Mireille Blay-Fornarino, and Johan Montagnat. Merging overlapping orchestrations: an application to the Bronze Standard medical application. In International Conference on Services Computing (SCC 2007), Salt Lake City, Utah, USA, pages 364-371, July 2007. IEEE Computer Engineering. [bibtex-entry]


  8. Tristan Glatard, David Emsellem, and Johan Montagnat. Generic web service wrapper for efficient embedding of legacy codes in service-based workflows. In Grid-Enabling Legacy Applications and Supporting End Users Workshop (GELA'06), Paris, France, June 19-23, 2006. [bibtex-entry]


  9. Tristan Glatard, Johan Montagnat, and Xavier Pennec. An experimental comparison of Grid5000 clusters and the EGEE grid. In Proc of the Workshop on Experimental Grid testbeds for the assessment of large-scale distributed applications and tools (EXPGRID'06), Paris, France, June 19-23, 2006. [bibtex-entry]


  10. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Efficient services composition for grid-enabled data-intensive applications. In IEEE, editor, Proceedings of the IEEE International Symposium on High Performance Distributed Computing (HPDC'06), Paris, France, June 19, pages 333-334, June 2006. IEEE. [bibtex-entry]


  11. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Medical image registration algorithms assessment: Bronze Standard application enactment on grids using the MOTEUR workflow engine. In Proc. of the HealthGrid conference (HealthGrid'06), Valencia, Spain, June 7-9, volume 120 of Studies in Health Technology and Informatics, pages 93-103, 2006. [bibtex-entry]


  12. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Probabilistic and dynamic optimization of job partitioning on a grid infrastructure. In 14th euromicro conference on Parallel, Distributed and network-based Processing (PDP06), Montbéliard-Sochaux, pages 231-238, February 2006. IEEE. [bibtex-entry]


  13. Tristan Glatard, Xavier Pennec, and Johan Montagnat. Performance evaluation of grid-enabled registration algorithms using bronze-standards. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part II, volume 4191 of LNCS, pages 152-160, 2-4 October 2006. Springer. [bibtex-entry]


  14. Johan Montagnat, Tristan Glatard, and Diane Lingrand. Data composition patterns in service-based workflows. In Workshop on Workflows in Support of Large-Scale Science (WORKS'06), Paris, France, June 2006. [bibtex-entry]


  15. Cécile Germain, Vincent Breton, Patrick Clarysse, Y. Gaudeau, Tristan Glatard, Emmanuel Jeannot, Yannick Legré, Charles Loomis, Johan Montagnat, Jean-Marie Moureau, Angel Osorio, Xavier Pennec, and Romain Texier. Grid-enabling medical image analysis. In proceedings of the IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGRID'05), volume 1, Cardiff, UK, pages 487-495, May 2005. IEEE. [bibtex-entry]


  16. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Grid-enabled workflows for data intensive applications. In Proc. 18th IEEE Symp. on Computer Based Medical Systems (CBMS'05), Dublin, Ireland, June 23-24, pages 537-542, 2005. IEEE. [bibtex-entry]


  17. Derek Hill, Xavier Pennec, Michael Burns, Michael Parkin, Jo Hajnal, Radu Stefanescu, Daniel Rueckert, and Johan Montagnat. Intraoperable Medical Image Registration Grid Service. In Proc. of HealthGrid 2004, Clermont-Ferrand, January 2004. European Commission, DG Information Society. Keyword(s): registration, matching, real time, parallelism. [bibtex-entry]


  18. H. Delingette, E. Bardinet, D. Rey, J-D. Lemarechal, J. Montagnat, S. Ourselin, A. Roche, D. Dormont, J. Yelnik, and N. Ayache. YAV++: a Software Platform for Medical Image Processing and Visualization. In Workshop on Interactive Medical Image Visualization and Analysis satellite symposia of MICCAI, IMIVA'01, Utrecht, The Netherlands, October 2001. [bibtex-entry]


  19. H. Delingette and J. Montagnat. New Algorithms for Controlling Active Contours Shape and Topology. In D. Vernon, editor, European Conference on Computer Vision (ECCV'2000), number 1843 of LNCS, Dublin, Ireland, pages 381-395, June 2000. Springer. Keyword(s): conference, regularization. [bibtex-entry]


  20. J. Montagnat and H. Delingette. Space and Time Shape Constrained Deformable Surfaces for 4D Medical Image Segmentation. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'2000), volume 1935 of Lectures Notes in Computer Science, Pittsburgh, USA, pages 196-205, October 2000. Springer. Keyword(s): conference, reconstruction. [bibtex-entry]


  21. L. Soler, H. Delingette, G. Malandain, J. Montagnat, N. Ayache, J.-M. Clément, C. Koehl, O. Dourthe, D. Mutter, and J. Marescaux. A Fully Automatic Anatomical, Pathological and Fonctionnal Segmentation from CT-scans for Hepatic Surgery. In Medical Imaging 2000, SPIE proceedings, San Diego, pages 246-255, February 2000. SPIE. Keyword(s): conference, reconstruction. [bibtex-entry]


  22. L. Soler, O. Dourthe, G. Malandain, J. Montagnat, H. Delingette, and N. Ayache. A new 3D segmentation of liver neoplasm, portal venous system and parenchymal contours. In European Congress of Radiology, Vienne (Autriche), mars 2000. [bibtex-entry]


  23. J. Montagnat, H. Delingette, and G. Malandain. Cylindrical Echocardiographic Images Segmentation based on 3D Deformable Models. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'99), volume 1679 of Lectures Notes in Computer Science, Cambridge, UK, pages 168-175, September 1999. Springer. Keyword(s): conference, reconstruction. [bibtex-entry]


  24. J. Montagnat and H. Delingette. A Hybrid Framework for Surface Registration and Deformable Models. In Computer Vision and Pattern Recognition, CVPR'97, San Juan, Puerto Rico, pages 1041-1046, June 1997. Keyword(s): conference, reconstruction. [bibtex-entry]


  25. J. Montagnat and H. Delingette. Reconstruction surfacique et segmentation robuste à base de maillages déformables. In Proceedings of Sixth Orasis conference (ORASIS'97), La Colle-sur-Loup, France, 1997. Keyword(s): workshop, reconstruction. [bibtex-entry]


  26. J. Montagnat and H. Delingette. Volumetric Medical Images Segmentation using Shape Constrained Deformable Models. In Proceedings of the First Joint Conference CVRMed-MRCAS'97, volume 1205 of Lecture Notes in Computer Science, pages 13-22, March 1997. Keyword(s): conference, reconstruction. [bibtex-entry]


  27. J. Montagnat, H. Delingette, N. Ayache, J.M. Clément, C. Roy, Y. Russier, V. Tassetti, and J. Marescaux. Liver Segmentation in Contrast Enhanced Helical CT-Scans. In Proceedings of World Congress on Medical Physics and Biomedical Engineering, Nice, France, 1997. Keyword(s): workshop, reconstruction. [bibtex-entry]


  28. L. Soler, G. Malandain, J. Montagnat, H. Delingette, N. Ayache, J.M. Clément, C. Roy, Y. Russier, V. Tassetti, and J. Marescaux. Automatic Segmentation of Portal Vein in CT-Scans of the Liver. In Proceedings of World Congress on Medical Physics and Biomedical Engineering, number 2, Nice, France, pages 788, 1997. Keyword(s): workshop, reconstruction. [bibtex-entry]


  29. R. Rönngren, M. Liljenstam, J. Montagnat, and R. Ayani. Transparent Incremental State Saving in Time Warp Parallel Discrete Event Simulation. In 10th Workshop on Parallel And Distributed Simulation, May 1996. [bibtex-entry]


Internal reports

  1. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Optimizing jobs timeouts on clusters and production grids. Technical report I3S/RR-2006-35-FR, I3S, 2006. [bibtex-entry]


  2. Tristan Glatard, Johan Montagnat, Xavier Pennec, David Emsellem, and Diane Lingrand. MOTEUR: a data-intensive service-based workflow manager. Technical report I3S/RR-2006-07-FR, I3S RAINBOW team, Univ. Nice-Sophia-Antipolis, March 2006. [bibtex-entry]


  3. Tristan Glatard, Johan Montagnat, and Xavier Pennec. An optimized workflow enactor for data-intensive grid applications. Technical report I3S/RR-2005-32, Nice-Sophia-Antipolis University, I3S Lab, RAINBOW project, 2005. [bibtex-entry]


  4. H. Delingette and J. Montagnat. Topology and Shape Constraints on Parametric Active Contours. Research report RR-3880, INRIA, 2000. Keyword(s): tech-report, reconstruction. [bibtex-entry]


  5. J. Montagnat and H. Delingette. Spatial and Temporal Shape Constrained Deformable Surfaces for 3D and 4D Medical Image Segmentation. Research report RR-4078, INRIA, 2000. Keyword(s): tech-report, reconstruction. [bibtex-entry]


  6. J. Montagnat, H. Delingette, N. Scapel, and N. Ayache. Representation, Shape, Topology and Evolution of Deformable Surfaces. Application to 3D Medical Image Segmentation. Research report RR-3954, INRIA, 2000. Keyword(s): tech-report, reconstruction. [bibtex-entry]


Miscellaneous

  1. Michel Dojat, Mélanie Pélégrini-Issac, Farooq Ahmad, Christian Barillot, Bénédicte Batrancourt, Alban Gaignard, Bernard Gibaud, Pascal Girard, David Godard, Gilles Kassel, Diane Lingrand, Grégoire Malandain, Franck Michel, Johan Montagnat, Xavier Pennec, Javier Balderrama, and Bacem Wali. NeuroLOG: A framework for the sharing and reuse of distributed tools and data in neuroimaging. 17th Annual Meeting of the Organization for Human Brain Mapping (OHBM), June 26-30, 2011. [bibtex-entry]


  2. Javier Rojas Balderrama, Diane Lingrand, Erik Pernod, Jean-Christophe Souplet, Xavier Pennec, and Johan Montagnat. NeuroLOG: neuroscience application workflows execution on the EGEE grid. Enabling Grid for E-sciencE (EGEE) conference, September 2008. Note: EGEE'08 best paper award. [bibtex-entry]


  3. Ignacio Blanquer, Vincent Hernandez, Guy Lonsdale, Kevin Dean, Sharon Lloyd, Richard McClatchey, Johan Montagnat, Mike Brady, Xavier Pennec, Howard Bolofsky, Chris Jones, Martin Hofmann, Tony Solmonides, Ilidio C. Oliveira, Juan Pedro Sanchez, Victoria Lopez, George De Moor, Brecht Claerhout, and Jean A.M. Harveg. HealthGrid White Paper: http://whitepaper.healthgrid.org/. Edited by Cisco System. Also in Studies in Health Technolgy and Informatics volume 112, 2005, p.249-321 (PMID: 15923733), September 2004. Keyword(s): HealthGrid. [Annotation] [bibtex-entry]


  4. G. Subsol, J. Montagnat, S. Ourselin, and L. Soler. Algorithmes de traitement d'images tridimensionnelles pour des applications pharmaceutiques, 1998. Note: Étude de faisabilité. [bibtex-entry]


  5. L. Soler, G. Malandain, H. Delingette, and J. Montagnat. Computerized anatomical segmentation of the liver from helical CT-Scanners. ERCIM News No.31, October 1997. [bibtex-entry]


  6. J. Montagnat. Segmentation d'images médicales volumiques à l'aide de maillages déformables contraints. Rapport de D.E.A., DEA de l'université d'Orsay et Ecole Normale Supérieure de Cachan, September 1996. [bibtex-entry]


  7. N. Ayache, E. Bardinet, S. Benayoun, H. Delingette, G. Malandain, S. Fernández-Vidal, L. Soler, J. Montagnat, S. Cotin, G. Subsol, and J.-P. Thirion. Analysis of medical images : Registration, Atlas, Motion. Audiovisual material produced by INRIA audiovisuel, 1996. Keyword(s): video, simulation. [bibtex-entry]



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