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Publications of year 2021

Articles in journal, book chapters

  1. Irene Balelli, Santiago Silva, and Marco Lorenzi. A Probabilistic Framework for Modeling the Variability Across Federated Datasets of Heterogeneous Multi-View Observations. Information processing in medical imaging : proceedings of the ... conference., 2021. Keyword(s): Federated Learning, Hierarchical Generative Model, Heterogeneity.
    @article{balelli:hal-03152886,
    TITLE = {{A Probabilistic Framework for Modeling the Variability Across Federated Datasets of Heterogeneous Multi-View Observations}},
    AUTHOR = {Balelli, Irene and Silva, Santiago and Lorenzi, Marco},
    url-hal= {https://hal.archives-ouvertes.fr/hal-03152886},
    JOURNAL = {{Information processing in medical imaging : proceedings of the ... conference.}},
    PUBLISHER = {{Springer-Verlag}},
    YEAR = {2021},
    KEYWORDS = {Federated Learning ; Hierarchical Generative Model ; Heterogeneity},
    PDF = {https://hal.archives-ouvertes.fr/hal-03152886/file/Fed_mv_PPCA_ipmi.pdf},
    HAL_ID = {hal-03152886},
    HAL_VERSION = {v1},
    
    }
    


  2. Julian Krebs, Hervé Delingette, Nicholas Ayache, and Tommaso Mansi. Learning a Generative Motion Model from Image Sequences based on a Latent Motion Matrix. IEEE Transactions on Medical Imaging, February 2021. Keyword(s): motion model, deformable registration, conditional variational autoencoder, gaussian process, latent variable model, motion interpolation, motion simulation, tracking.
    @article{krebs:hal-03126419,
    TITLE = {{Learning a Generative Motion Model from Image Sequences based on a Latent Motion Matrix}},
    AUTHOR = {Krebs, Julian and Delingette, Herv{\'e} and Ayache, Nicholas and Mansi, Tommaso},
    url-hal= {https://hal.archives-ouvertes.fr/hal-03126419},
    JOURNAL = {{IEEE Transactions on Medical Imaging}},
    PUBLISHER = {{Institute of Electrical and Electronics Engineers}},
    YEAR = {2021},
    MONTH = Feb,
    KEYWORDS = {motion model ; deformable registration ; conditional variational autoencoder ; gaussian process ; latent variable model ; motion interpolation ; motion simulation ; tracking},
    PDF = {https://hal.archives-ouvertes.fr/hal-03126419/file/krebs_final.pdf},
    HAL_ID = {hal-03126419},
    HAL_VERSION = {v1},
    
    }
    


  3. Marco Lorenzi, Clément Abi Nader, Nicholas Ayache, Giovanni B Frisoni, and Philippe Robert. Simulating the outcome of amyloid treatments in Alzheimer's Disease from multi-modal imaging and clinical data. Brain communications, February 2021. Keyword(s): Alzheimer's Disease, Clinical trials, Disease progression, Amyloid hypothesis, Mental State Examination, FAQ = Functional Assessment Questionnaire, RAVLT = Rey Auditory Verbal Learning Test, CDRSB = Clinical Dementia Rating Scale Sum of Boxes.
    @article{lorenzi:hal-02968724,
    TITLE = {{Simulating the outcome of amyloid treatments in Alzheimer's Disease from multi-modal imaging and clinical data}},
    AUTHOR = {Lorenzi, Marco and Abi Nader, Cl{\'e}ment and Ayache, Nicholas and Frisoni, Giovanni B and Robert, Philippe},
    url-hal= {https://hal.archives-ouvertes.fr/hal-02968724},
    JOURNAL = {{Brain communications}},
    YEAR = {2021},
    MONTH = Feb,
    KEYWORDS = {Alzheimer's Disease ; Clinical trials ; Disease progression ; Amyloid hypothesis ; Mental State Examination ; FAQ = Functional Assessment Questionnaire ; RAVLT = Rey Auditory Verbal Learning Test ; CDRSB = Clinical Dementia Rating Scale Sum of Boxes},
    PDF = {https://hal.archives-ouvertes.fr/hal-02968724v4/file/revised_manuscript.pdf},
    HAL_ID = {hal-02968724},
    HAL_VERSION = {v4},
    
    }
    


  4. Xavier Pennec. Statistical analysis of organs' shapes and deformations: the Riemannian and the affine settings in computational anatomy. In Jean-François Uhl, Joaquim Jorge, Daniel Simoes Lopes, and Pedro F Campos, editors, Digital Anatomy - Applications of Virtual, Mixed and Augmented Reality, Human--Computer Interaction Series. Springer Nature, March 2021.
    @incollection{pennec:hal-02925156,
    TITLE = {{Statistical analysis of organs' shapes and deformations: the Riemannian and the affine settings in computational anatomy}},
    AUTHOR = {Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-02925156},
    BOOKTITLE = {{Digital Anatomy - Applications of Virtual, Mixed and Augmented Reality}},
    EDITOR = {Jean-Fran{\c c}ois Uhl and Joaquim Jorge and Daniel Simoes Lopes and Pedro F Campos},
    PUBLISHER = {{Springer Nature}},
    SERIES = {Human--Computer Interaction Series},
    YEAR = {2021},
    MONTH = Mar,
    PDF = {https://hal.inria.fr/hal-02925156/file/2020_CompAnat_Pennec.pdf},
    HAL_ID = {hal-02925156},
    HAL_VERSION = {v1},
    
    }
    


Conference articles

  1. Hind Dadoun, Hervé Delingette, Anne-Laure Rousseau, Eric De Kerviler, and Nicholas Ayache. Combining Bayesian and Deep Learning Methods for the Delineation of the Fan in Ultrasound Images. In International Symposium on Biomedical Imaging, Nice, France, April 2021. Keyword(s): pre-processing, Ultrasound fan area detection, Deep Learning, Ultrasound imaging.
    @inproceedings{dadoun:hal-03127809,
    TITLE = {{Combining Bayesian and Deep Learning Methods for the Delineation of the Fan in Ultrasound Images}},
    AUTHOR = {Dadoun , Hind and Delingette, Herv{\'e} and Rousseau, Anne-Laure and De Kerviler, Eric and Ayache, Nicholas},
    url-hal= {https://hal.inria.fr/hal-03127809},
    BOOKTITLE = {{International Symposium on Biomedical Imaging}},
    ADDRESS = {Nice, France},
    YEAR = {2021},
    MONTH = Apr,
    KEYWORDS = {pre-processing ; Ultrasound fan area detection ; Deep Learning ; Ultrasound imaging},
    PDF = {https://hal.inria.fr/hal-03127809/file/root.pdf},
    HAL_ID = {hal-03127809},
    HAL_VERSION = {v1},
    
    }
    


  2. Nicolas Guigui, Pamela Moceri, Maxime Sermesant, and Xavier Pennec. Cardiac Motion Modeling with Parallel Transport and Shape Splines. In International Symposium on Biological Imaging, Nice, France, April 2021. Keyword(s): Shape Analysis, Cardiac Modelling, LDDMM.
    @inproceedings{guigui:hal-03142196,
    TITLE = {{Cardiac Motion Modeling with Parallel Transport and Shape Splines}},
    AUTHOR = {Guigui, Nicolas and Moceri, Pamela and Sermesant, Maxime and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-03142196},
    BOOKTITLE = {{International Symposium on Biological Imaging}},
    ADDRESS = {Nice, France},
    YEAR = {2021},
    MONTH = Apr,
    KEYWORDS = {Shape Analysis ; Cardiac Modelling ; LDDMM},
    PDF = {https://hal.inria.fr/hal-03142196/file/root.pdf},
    HAL_ID = {hal-03142196},
    HAL_VERSION = {v1},
    
    }
    


Miscellaneous

  1. Luigi Antelmi, Nicholas Ayache, Philippe Robert, Federica Ribaldi, Valentina Garibotto, Giovanni B Frisoni, and Marco Lorenzi. Combining Multi-Task Learning and Multi-Channel Variational Auto-Encoders to Exploit Datasets with Missing Observations -Application to Multi-Modal Neuroimaging Studies in Dementia. Note: Working paper or preprint, January 2021. Keyword(s): Multi Task Learning, Missing Data, Variational Autoencoders, Multimodal Data Analysis, OPAL-Meso.
    @unpublished{antelmi:hal-03114888,
    TITLE = {{Combining Multi-Task Learning and Multi-Channel Variational Auto-Encoders to Exploit Datasets with Missing Observations -Application to Multi-Modal Neuroimaging Studies in Dementia}},
    AUTHOR = {Antelmi, Luigi and Ayache, Nicholas and Robert, Philippe and Ribaldi, Federica and Garibotto, Valentina and Frisoni, Giovanni B and Lorenzi, Marco},
    url-hal= {https://hal.inria.fr/hal-03114888},
    NOTE = {working paper or preprint},
    YEAR = {2021},
    MONTH = Jan,
    KEYWORDS = {Multi Task Learning ; Missing Data ; Variational Autoencoders ; Multimodal Data Analysis ; OPAL-Meso},
    PDF = {https://hal.inria.fr/hal-03114888/file/elsarticle-template-harv.pdf},
    HAL_ID = {hal-03114888},
    HAL_VERSION = {v1},
    
    }
    


  2. Yann Fraboni, Richard Vidal, and Marco Lorenzi. Free-rider Attacks on Model Agregation in Federated Learning. Note: Accepted at AISTATS 2021, February 2021. Keyword(s): Free-riders, Federated Learning, Ornstein-Uhlenbeck process, FedAvg, FedProx, Free-riders.
    @unpublished{fraboni:hal-03123638,
    TITLE = {{Free-rider Attacks on Model Agregation in Federated Learning}},
    AUTHOR = {Fraboni, Yann and Vidal, Richard and Lorenzi, Marco},
    url-hal= {https://hal.archives-ouvertes.fr/hal-03123638},
    NOTE = {Accepted at AISTATS 2021},
    YEAR = {2021},
    MONTH = Feb,
    KEYWORDS = {Free-riders ; Federated Learning ; Ornstein-Uhlenbeck process ; FedAvg ; FedProx ; Free-riders},
    PDF = {https://hal.archives-ouvertes.fr/hal-03123638/file/free_riding_AISTATS_vf.pdf},
    HAL_ID = {hal-03123638},
    HAL_VERSION = {v1},
    
    }
    


  3. Nicolas Guigui and Xavier Pennec. A reduced parallel transport equation on Lie Groups with a left-invariant metric. Note: Working paper or preprint, March 2021.
    @unpublished{guigui:hal-03154318,
    TITLE = {{A reduced parallel transport equation on Lie Groups with a left-invariant metric}},
    AUTHOR = {Guigui, Nicolas and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-03154318},
    NOTE = {working paper or preprint},
    YEAR = {2021},
    MONTH = Mar,
    PDF = {https://hal.inria.fr/hal-03154318/file/Parallel%20Transport%20on%20Lie%20Groups%2Fparallel_transport_on_lie_groups.pdf},
    HAL_ID = {hal-03154318},
    HAL_VERSION = {v1},
    
    }
    


  4. Talia Nir, Jean-Paul Fouche, Jintanat Ananworanich, Beau Ances, Jasmina Boban, Bruce Brew, Linda Chang, Joga Chaganti, Christopher R.K. Ching, Lucette Cysique, Thomas Ernst, Joshua Faskowitz, Vikash Gupta, Jaroslaw Harezlak, Jodi Heaps-Woodruff, Charles Hinkin, Jacqueline Hoare, John Joska, Kalpana Kallianpur, Taylor Kuhn, Hei Lam, Meng Law, Christine Lebrun-Frenay, Andrew Levine, Lydiane Mondot, Beau Nakamoto, Bradford Navia, Xavier Pennec, Eric Porges, Cecilia Shikuma, April Thames, Victor Valcour, Matteo Vassallo, Adam Woods, Paul Thompson, Ronald Cohen, Robert Paul, Dan Stein, and Neda Jahanshad. Smaller limbic structures are associated with greater immunosuppression in over 1000 HIV-infected adults across five continents: Findings from the ENIGMA-HIV Working Group. Note: Working paper or preprint, January 2021.
    @unpublished{nir:hal-03063822,
    TITLE = {{Smaller limbic structures are associated with greater immunosuppression in over 1000 HIV-infected adults across five continents: Findings from the ENIGMA-HIV Working Group}},
    AUTHOR = {Nir, Talia and Fouche, Jean-Paul and Ananworanich, Jintanat and Ances, Beau and Boban, Jasmina and Brew, Bruce and Chang, Linda and Chaganti, Joga and Ching, Christopher R.K. and Cysique, Lucette and Ernst, Thomas and Faskowitz, Joshua and Gupta, Vikash and Harezlak, Jaroslaw and Heaps-Woodruff, Jodi and Hinkin, Charles and Hoare, Jacqueline and Joska, John and Kallianpur, Kalpana and Kuhn, Taylor and Lam, Hei and Law, Meng and Lebrun-Frenay, Christine and Levine, Andrew and Mondot, Lydiane and Nakamoto, Beau and Navia, Bradford and Pennec, Xavier and Porges, Eric and Shikuma, Cecilia and Thames, April and Valcour, Victor and Vassallo, Matteo and Woods, Adam and Thompson, Paul and Cohen, Ronald and Paul, Robert and Stein, Dan and Jahanshad, Neda},
    url-hal= {https://hal.inria.fr/hal-03063822},
    NOTE = {working paper or preprint},
    YEAR = {2021},
    MONTH = Jan,
    DOI = {10.1101/724583},
    PDF = {https://hal.inria.fr/hal-03063822/file/724583v1.full.pdf},
    HAL_ID = {hal-03063822},
    HAL_VERSION = {v1},
    
    }
    



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Last modified: Wed Mar 3 00:30:06 2021
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