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Publications of Mauricio A. Reyes

Books and proceedings

  1. Bjoern Menze, Mauricio Reyes, Andras Jakab, Elisabeth Gerstner, Justin Kirby, and Keyvan Farahani, editors. Proceedings of the MICCAI Challenge on Multimodal Brain Tumor Image Segmentation (BRATS) 2013, Nagoya, Japan, September 2013. MICCAI. [bibtex-entry]


Thesis

  1. Mauricio A. Reyes. Respiratory Motion Compensation in Emission Tomography. Thèse de sciences, Université de Nice Sophia-Antipolis, December 2005. [bibtex-entry]


Articles in journal, book chapters

  1. Bjoern Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elisabeth Gerstner, Marc-Andre Weber, Tal Arbel, Brian Avants, Nicholas Ayache, Patricia Buendia, Louis Collins, Nicolas Cordier, Jason Corso, Antonio Criminisi, Tilak Das, Hervé Delingette, Cagatay Demiralp, Christopher Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan Iftekharuddin, Raj Jena, Nigel John, Ender Konukoglu, Danial Lashkari, Jose Antonio Mariz, Raphael Meier, Sergio Pereira, Doina Precup, S. J. Price, Tammy Riklin-Raviv, Syed Reza, Michael Ryan, Lawrence Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos Silva, Nuno Sousa, Nagesh Subbanna, Gabor Szekely, Thomas Taylor, Owen Thomas, Nicholas Tustison, Gozde Unal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, Darko Zikic, Marcel Prastawa, Mauricio Reyes, and Koen Van Leemput. The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). IEEE Transactions on Medical Imaging, 34(10):1993-2024, October 2014. [bibtex-entry]


  2. R. Blanc, Christof Seiler, G. Székely, L. Nolte, and Mauricio Reyes. Statistical Model Based Shape Prediction from a Combination of Direct Observations and Various Surrogates. Medical Image Analysis (MedIA), 16(6):1156-1166, 2012. [bibtex-entry]


  3. L. Ritacco, Christof Seiler, G. Farfalli, L. Nolte, Mauricio Reyes, D. Muscolo, and L. Tinao. Validity of an Automatic Measure Protocol in Distal Femur for Allograft Selection from a Three-Dimensional Virtual Bone Bank System. Cell and Tissue Banking, 2012. Note: To appear. [bibtex-entry]


  4. Christof Seiler, A. Gazdhar, Mauricio Reyes, L.M. Benneker, T. Geiser, K.A. Siebenrock, and B. Gantenbein-Ritter. Time-Lapse Microscopy and Classification of 2D Human Mesenchymal Stem Cells Based on Cell Shape Picks Up Myogenic from Osteogenic and Adipogenic Differentiation. Journal of Tissue Engineering and Regenerative Medicine, 2012. Note: To appear. [bibtex-entry]


  5. Christof Seiler, Xavier Pennec, and Mauricio Reyes. Capturing the Multiscale Anatomical Shape Variability with Polyaffine Transformation Trees. Medical Image Analysis (MedIA), 16(7):1371-1384, 2012. [bibtex-entry]


  6. Christof Seiler, P. Büchler, L.-P. Nolte, R. Paulsen, and Mauricio Reyes. Hierarchical Markov Random Fields Applied to Model Soft Tissue Deformations on Graphics Hardware. In J. J. Zhang N. Magnenat-Thalmann and D. D. Feng, editors, Recent Advances in the 3D Physiological Human, pages 133-148. Springer, 2009. ISBN: 978-1-84882-564-2. [bibtex-entry]


  7. Marius George Linguraru, Tom Vercauteren, Mauricio Reyes Aguirre, Miguel Ángel González Ballester, and Nicholas Ayache. Segmentation Propagation from Deformable Atlases for Brain Mapping and Analysis. Brain Research Journal, 1(4):269-287, 2007. [bibtex-entry]


  8. M Reyes, G Malandain, P M Koulibaly, M A Gonzalez-Ballester, and J Darcourt. Model-based respiratory motion compensation for emission tomography image reconstruction. Physics in Medicine and Biology, 52(12):3579-600, June 2007. [Abstract] [bibtex-entry]


  9. Grégoire Malandain and Mauricio Reyes. La tomographie en mouvement. Pour la science, 338:132-137, December 2005. [bibtex-entry]


Conference articles

  1. H. Bou-Sleiman, Christof Seiler, T. Iizuka, L. Nolte, and Mauricio Reyes. Population-Based Design of Mandibular Plates Based on Bone Quality and Morphology. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), volume 7510 of LNCS, pages 66-73, October 2012. Springer, Heidelberg. [bibtex-entry]


  2. Christof Seiler, Xavier Pennec, and Mauricio Reyes. Simultaneous Multiscale Polyaffine Registration by Incorporating Deformation Statistics. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), volume 7511 of LNCS, pages 130-137, October 2012. Springer, Heidelberg. ISBN: 978-3-642-33417-7. [bibtex-entry]


  3. S. Bonaretti, Christof Seiler, C. Boichon, P. Bchler, and Mauricio Reyes. Mesh-based vs. Image-based Statistical Model of Appearance of the Human Femur: A Preliminary Comparison Study for the Creation of Finite Element Meshes. In Mesh Processing in Medical Image Analysis Workshop MICCAI, 2011. [bibtex-entry]


  4. Christof Seiler, Xavier Pennec, and Mauricio Reyes. Geometry-Aware Multiscale Image Registration Via OBBTree-Based Polyaffine Log-Demons. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2011 (MICCAI), volume 6892 of LNCS, pages 631-638, September 2011. Springer, Heidelberg. Note: Young Scientist Award. [bibtex-entry]


  5. Christof Seiler, Xavier Pennec, Lucas Ritacco, and Mauricio Reyes. Femur Specific Polyaffine Model to Regularize the Log-Domain Demons Registration. In Benoit M. Dawant and David R. Haynor, editors, Proceedings of SPIE Medical Imaging '11, volume 7962, pages Paper 7962-15, January 2011. SPIE Publishing. ISBN: 9780819485045. [bibtex-entry]


  6. S. Bauer, Christof Seiler, T. Bardyn, P. Büchler, and Mauricio Reyes. Atlas-Based Segmentation of Brain Tumor Images Using a Markov Random Field-Based Tumor Growth Model and Non-Rigid Registration. In EMBC, September 2010. [bibtex-entry]


  7. S. Bonaretti, M. Kistler, C. Seiler, M. Reyes, and P. Büchler. Combined Statistical Model of Bone Shape and Mechanical Properties for Bone and Implant Modeling. In CMBBE, February 2010. [bibtex-entry]


  8. Christof Seiler, Xavier Pennec, and Mauricio Reyes. Parametric regression of 3D medical images through the exploration of non-parametric regression models. In Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), pages 452-455, 2010. IEEE. [bibtex-entry]


  9. R. Blanc, Mauricio Reyes, Christof Seiler, and G. Székely. Conditional Variability of Statistical Shape Models Based on Surrogate Variables. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2009 (MICCAI), volume 5762 of LNCS, pages 84-91, September 2009. Springer, Heidelberg. [bibtex-entry]


  10. M. Reyes Aguirre, M.G. Linguraru, K. Marias, N. Ayache, L.-P. Nolte, and M. A. González Ballester. Statistical Shape Analysis via Principal Factor Analysis. In Proceedings of IEEE International Symposium on Biomedical Imaging (ISBI), Metro Washington DC, USA, pages 1216-1219, 2007. [bibtex-entry]


  11. M. A. González Ballester, M.G. Linguraru, M. Reyes Aguirre, and N. Ayache. On the Adequacy of Principal Factor Analysis for the Study of Shape Variability. In J.M. Fitzpatrick and J.M. Reinhardt, editors, SPIE Medical Imaging '05, volume 5747, pages 1392-1399, 2005. SPIE Publishing. [bibtex-entry]


  12. Mauricio Reyes, Grégoire Malandain, Jacques Darcourt, and Pierre Malick Koulibaly. Respiratory Motion Correction in Emission Tomography Imaging. In Fully Three-Dimensional Image Reconstruction Meeting in Radiology and Nuclear Medicine, Salt Lake City, Utah, USA, July 2005. [bibtex-entry]


  13. Mauricio Reyes, Grégoire Malandain, Pierre Malick Koulibaly, Miguel A. González Ballester, and Jacques Darcourt. Respiratory Motion Correction in Emission Tomography Image Reconstruction. In J. Duncan and G. Gerig, editors, Proceedings of MICCAI'05, Part II, volume 3750 of LNCS, Palm Springs, California, pages 369-376, 2005. Springer. [bibtex-entry]


Internal reports

  1. Mauricio Reyes Aguirre, Grégoire Malandain, and Jacques Darcourt. Respiratory Movement Correction in Emission Tomography. Research report RR-5279, INRIA, July 2004. Keyword(s): image reconstruction, respiratory movement, MLEM, nuclear medicine, emission tomography. [bibtex-entry]


Miscellaneous

  1. Christof Seiler, A. Gazdhar, T. Geiser, Mauricio Reyes, and B. Gantenbein-Ritter. Mesenchymal Stem Cell Classification During Differentiation Based on Shape Information. TERMIS, Galway, Ireland, June 2010. Note: Abstract. [bibtex-entry]


  2. Christof Seiler, S. Weber, W. Schmidt, F. Fischer, N. Reimers, and Mauricio Reyes. Automatic Landmark Propagation for Left and Right Symmetry Assessment of Tibia and Femur: A Computational Anatomy Based Approach. CAOS, Boston, USA, June 2009. Note: Abstract. [bibtex-entry]


  3. Mauricio A. Reyes, Gregoire Malandain, Nicholas Ayache, Jacques Darcourt, and Pierre M. Koulibaly. Respiratory Motion Compensation within Emission Tomographic Reconstruction. 52nd Annual Meeting of the Society of Nuclear Medicine, June 2005. [bibtex-entry]



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