Publications of Éric Bardinet

1. E. Bardinet. Modèles déformables contraints - applications à l'imagerie cardiaque. Thèse de sciences, université Paris IX Dauphine, December 1995. [bibtex-entry]

1. Éric Bardinet, Manik Bhattacharjee, Didier Dormont, Bernard Pidoux, Grégoire Malandain, Michael Schupbach, Nicholas Ayache, Philippe Cornu, Yves Agid, and Jerome Yelnik. A three-dimensional histological atlas of the human basal ganglia. II. Atlas deformation strategy and evaluation in deep brain stimulation for Parkinson disease.. Journal of Neurosurgery, 110(2):208-19, February 2009. Keyword(s): Basal Ganglia, pathology, Brain Mapping, methods, Deep Brain Stimulation, methods, Humans, Image Interpretation Computer-Assisted, methods, Imaging Three-Dimensional, methods, Magnetic Resonance Imaging, methods, Medical Illustration, Microelectrodes, Microscopy, Parkinson Disease, pathology, Red Nucleus, pathology, Sensitivity and Specificity, Substantia Nigra, pathology, Subthalamic Nucleus, pathology. [Abstract] [bibtex-entry]



2. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Grégoire Malandain, Sébastien Ourselin, Dominique Tandé, Carine Karachi, Nicholas Ayache, Philippe Cornu, and Yves Agid. A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data. NeuroImage, 34(2):618-38, January 2007. [Abstract] [bibtex-entry]



3. M.G. Linguraru, N. Ayache, E. Bardinet, M.A. González Ballester, D. Galanaud, S. Haïk, B.A. Faucheux, J.J. Hauw, P. Cozzone, D. Dormont, and J.P. Brandel. Differentiation of sCJD and vCJD Forms by Automated Analysis of Basal Ganglia Intensity Distribution in Multisequence MRI of the Brain - Definition and Evaluation of New MRI-based Ratios. IEEE Transactions on Medical Imaging, 25(8):1052-1067, 2006. [bibtex-entry]



4. Alain Pitiot, Eric Bardinet, Paul M. Thompson, and Grégoire Malandain. Piecewise Affine Registration of Biological Images for Volume Reconstruction. Medical Image Analysis, 10(3):465-483, June 2006. Keyword(s): registration, clustering, reconstruction, histology, MRI. [Abstract] [bibtex-entry]



5. Grégoire Malandain, Éric Bardinet, Koen Nelissen, and Wim Vanduffel. Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations. NeuroImage, 23(1):111-127, September 2004. [Abstract] [bibtex-entry]



6. Pascal Cachier, Eric Bardinet, Didier Dormont, Xavier Pennec, and Nicholas Ayache. Iconic Feature Based Nonrigid Registration: The PASHA Algorithm. Computer Vision and Image Understanding, 89(2-3):272-298, Feb.-march 2003. Note: Special Issue on Nonrigid Registration. Keyword(s): registration, matching, similarity measures, deformations. [bibtex-entry]



7. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Création d'un Modèle Biomécanique Spécifique du Cerveau par l'Analyse d'Images et son Application à la Neurochirurgie Stéréotaxique. Mécanique et Industrie, 4(4):429-433, 2003. Note: Numéro spécial CFM 2003. [bibtex-entry]



8. J. Yelnik, P. Damier, S. Demeret, D. Gervais, E. Bardinet, B.P. Bejjani, C. Francois, J.L. Houeto, I. Arnule, D. Dormont, D. Galanaud, B. Pidoux, P. Cornu, and Y. Agid. Localization of stimulating electrodes in patients with Parkinson disease by using a three-dimensional atlas-magnetic resonance imaging coregistration method. Journal of Neurosurgery, 99(1):89-99, July 2003. [Abstract] [bibtex-entry]



9. Carine Karachi, Chantal François, Karine Parain, Eric Bardinet, Dominique Tandé, Etienne Hirsch, and Jérôme Yelnik. Three-dimensional cartography of functional territories in the human striatopallidal complex by using calbindin immunoreactivity. Journal of Comparative Neurology, 450(2):122-134, August 2002. [Abstract] [bibtex-entry]



10. Eric Bardinet, Laurent D. Cohen, and Nicholas Ayache. A parametric deformable model to fit unstructured 3D data. Computer Vision and Image Understanding, 71(1):39-54, 1998. [bibtex-entry]



11. E. Bardinet, L.D. Cohen, and N. Ayache. Tracking and motion analysis of the left ventricle with deformable superquadrics. Medical Image Analysis, 1(2), 1996. Note: Also INRIA Research Report RR-2797, INRIA Sophia-Antipolis, February 1996. [bibtex-entry]

1. Eric Bardinet, Didier Dormont, Grégoire Malandain, Manik Bhattacharjee, Bernard Pidoux, Christian Saleh, Philippe Cornu, Nicholas Ayache, Yves Agid, and Jérôme Yelnik. Retrospective cross-evaluation of an histological and deformable 3D atlas of the basal ganglia on series of Parkinsonian patients treated by deep brain stimulation (DBS). In J. Duncan and G. Gerig, editors, Proceedings of MICCAI'05, volume 3750 of LNCS, Palm Springs, California, pages 385-393, 2005. Springer. [bibtex-entry]



2. M.G. Linguraru, N. Ayache, M.A. González Ballester, E. Bardinet, D. Galanaud, S. Haïk, B.A. Faucheux, P. Cozzone, D. Dormont, and J.P. Brandel. New Ratios for the Detection and Classification of CJD in Multisequence MRI of the Brain. In J. Duncan and G. Gerig, editors, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2005, volume 3750 of LNCS, Palm Springs, USA, pages 492-499, 2005. Springer. [bibtex-entry]



3. D. Galanaud, M.G. Linguraru, S. Haïk, D. Dormont, E. Bardinet, B. Faucheaux, P. Cozzone, N. Ayache, and J.P. Brandel. Intérêt de l'IRM Multimodalitaire dand le Diagnostic des Maladies à Prions. In Congrès du G.I.S. Infections à Prions, pages 26, 2004. [bibtex-entry]



4. M.G. Linguraru, N. Ayache, E. Bardinet, M.A. González Ballester, D. Galanaud, S. Haïk, B. Faucheaux, J.J. Hauw, J. Chiras, P. Cozzone, D. Dormont, and J.P. Brandel. Détection et Quantification Automatique des Hypersignaux en IRM dans la Maladie de Creutzfeldt-Jakob. In Congrès du G.I.S. Infections à Prions, pages 25, 2004. [bibtex-entry]



5. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Détermination d'un modèle biomécanique du cerveau par l'analyse d'images : application à la maladie de Parkinson. In Congrès Français de Mécanique (CFM), 2003. [bibtex-entry]



6. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Patient Specific Biomechanical Model of the Brain: Application to Parkinson's disease procedure. In N. Ayache and H. Delingette, editors, International Symposium on Surgery Simulation and Soft Tissue Modeling (IS4TM'03), volume 2673 of Lecture Notes in Computer Science, Juan-les-Pins, France, pages 321-331, 2003. INRIA Sophia Antipolis, Springer. [bibtex-entry]



7. C. Kenwright, E. Bardinet, S.A. Hojjat, G. Malandain, N. Ayache, and A.C.F. Colchester. 2D to 3D Refinement of Post Mortem Optical and MRI Co-Registration. In Randy E. Ellis and Terry M. Peters, editors, Medical image computing and computer-assisted intervention (MICCAI 2003), volume 2879 of LNCS, Montreal, Canada, pages 935-944, November 2003. Springer. [bibtex-entry]



8. G. Malandain and E. Bardinet. Fusion of autoradiographies with an MR volume using 2-D and 3-D linear transformations. In Chris Taylor and Alison Noble, editors, Proceedings of Information Processing in Medical Imaging (IPMI'03), volume 2732 of LNCS, pages 487-498, 2003. Springer. Keyword(s): autoradiography, histology, MRI, matching, fusion. [bibtex-entry]



9. Grégoire Malandain and Eric Bardinet. Intensity compensation within series of images. In Randy E. Ellis and Terry M. Peters, editors, Medical image computing and computer-assisted intervention (MICCAI 2003), volume 2879 of LNCS, Montreal, Canada, pages 41-49, November 2003. Springer. [Abstract] [bibtex-entry]



10. A. Pitiot, G. Malandain, E. Bardinet, and P. M. Thompson. Piecewise Affine Registration of Biological Images. In J.C. Gee, J.B. A. Maintz, and M. W. Vannier, editors, Second International Workshop on Biomedical Image Registration WBIR'03, volume 2717 of Lecture Notes in Computer Science, Philadelphia, PA, USA, pages 91-101, 2003. Springer. Note: Also research report INRIA RR-4866. Keyword(s): registration, histology. [bibtex-entry]



11. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Chantal François, Dominique Tandé, Karine Parain, Grégoire Malandain, Nicholas Ayache, Etienne Hirsch, and Yves Agid. Delineation of the basal ganglia in MR images of patients by automatic registration of a multimodal atlas based on histological and MR data. In NeuroImage (HBM'03), New York, USA, 2003. Keyword(s): fMRI. [bibtex-entry]



12. Eric Bardinet, Pascal Cathier, Alexis Roche, Nicholas Ayache, and Didier Dormont. A posteriori validation of pre-operative planning in functional neurosurgery by quantification of brain pneumocephalus. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 323-330, September 2002. Springer. Keyword(s): functional neurosurgery. [bibtex-entry]



13. Eric Bardinet, Sébastien Ourselin, Didier Dormont, Grégoire Malandain, Dominique Tandé, Karine Parain, Nicholas Ayache, and Jérôme Yelnik. Co-registration of histological, optical and MR data of the human brain. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 548-555, September 2002. Springer. Keyword(s): registration, human brain atlas, histology, MRI. [bibtex-entry]



14. Eric Bardinet, Sébastien Ourselin, Grégoire Malandain, Dominique Tandé, Karine Parain, Nicholas Ayache, and Jérôme Yelnik. Three dimensional functional cartography of the human basal ganglia by registration of optical and histological serial sections. In IEEE International Symposium on Biomedical Imaging, Washington, USA, pages 329-332, 2002. Keyword(s): registration, human brain atlas, histology, MRI. [bibtex-entry]



15. Didier Dormont, Eric Bardinet, Alexis Roche, Pascal Cachier, François Bonneville, Nicholas Ayache, Philippe Cornu, and Claude Marsault. Study of per-operative pneumocephalus during functional stereotactic procedures using automated registration algorithms of pre and immediate post operative 3D MR acquisitions. In XVIIth Symposium Neuroradiologicum, Paris, August 2002. [bibtex-entry]



16. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Chantal François, Dominique Tandé, Karine Parain, Sébastien Ourselin, Grégoire Malandain, Nicholas Ayache, and Etienne Hirsch. Elaboration of a three-dimensional, functional and registrable atlas of the human basal ganglia. In 3rd Forum of European Neuroscience, Paris, July 2002. The Federation of European Neuroscience Societies (FENS). Keyword(s): registration, human brain atlas, histology, MRI. [bibtex-entry]



17. E. Bardinet, A.C.F Colchester, A. Roche, Y. Zhu, Y. He, S. Ourselin, B. Nailon, S.A. Hojjat, J. Ironside, S. Al-Sarraj, N. Ayache, and J. Wardlaw. Registration of Reconstructed Post Mortem Optical Data with MR Scans of the Same Patient. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 957-965, October 2001. Keyword(s): registration, matching, histology. [bibtex-entry]



18. H. Delingette, E. Bardinet, D. Rey, J-D. Lemarechal, J. Montagnat, S. Ourselin, A. Roche, D. Dormont, J. Yelnik, and N. Ayache. YAV++: a Software Platform for Medical Image Processing and Visualization. In Workshop on Interactive Medical Image Visualization and Analysis satellite symposia of MICCAI, IMIVA'01, Utrecht, The Netherlands, October 2001. [bibtex-entry]



19. S. Ourselin, E. Bardinet, D. Dormont, G. Malandain, A. Roche, N. Ayache, D. Tandé, K. Parain, and J. Yelnik. Fusion of histological sections and MR images: towards the construction of an atlas of the human basal ganglia. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 743-751, October 2001. Keyword(s): registration, matching, human brain atlas, histology, MRI. [bibtex-entry]



20. E. Bardinet, S. Fernández-Vidal, S. Damas, G. Malandain, and N. Perez de la Blanca Capilla. Structural Object Matching. In Advanced Concepts for Intelligent Vision Systems (ACIVS 2000), Baden-Baden, Allemagne, August 2000. [bibtex-entry]



21. A. C. F. Colchester, S. Ourselin, Y. Zhu, E. Bardinet, Y. He, A. Roche, S. Al-Sarraj, B. Nailon, J. Ironside, and N. Ayache. 3-D Reconstruction of Macroscopic Optical Brain Slice Images. In A.M. DiGioia and S. Delp, editors, Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery (MICCAI 2000), volume 1935 of Lectures Notes in Computer Science, Pittsburgh, Pennsylvanie USA, octobre 11-14 2000. Springer. Keyword(s): registration, matching, histology, MRI. [bibtex-entry]



22. S. Fernández-Vidal, E. Bardinet, G. Malandain, S. Damas, and N.P. de la Blanca Capilla. Object Representation and Comparison Inferred from Its Medial Axis. In International Conference on Pattern Recognition (ICPR 2000), volume 1, Barcelone, Espagne, pages 1712-1715, septembre 2000. Keyword(s): euclidean skeleton, medial axis transform, topological characterisation, shape analysis, object representation, object comparison, ARG, graph matching. [Abstract] [bibtex-entry]



23. E. Bardinet, L.D. Cohen, and N. Ayache. Tracking medical 3D data with a deformable parametric model. In Robert Cipolla, editor, 4th European Conference on Computer Vision (ECCV'96), volume vol 1, Cambridge, April 1996. [bibtex-entry]



24. E. Bardinet, L.D. Cohen, and N. Ayache. Superquadrics and free-form deformations: a global model to fit and track 3D medical data. In Proceedings of the Conference on Computer Vision, Virtual Reality and Robotics in Medecine (CVRMed'95), volume 905 of Lecture Notes in Computer Science, Nice, France, April 1995. Springer. Keyword(s): FFD, Superquadrique, Deformations, motion tracking. [bibtex-entry]



25. E. Bardinet, L.D. Cohen, and N. Ayache. Tracking medical 3D data with a parametric deformable model. In IEEE Symposium on Computer Vision, Coral Gables, Florida, November 1995. [bibtex-entry]



26. Laurent D. Cohen, Eric Bardinet, and Nicholas Ayache. Reconstruction of Digital Terrain Model with a Lake. In Proceedings of SPIE'93, Geometric Methods in Computer Vision, San Diego, California, USA, July 1993. Note: Available as INRIA Research Report 1824, December 1992. [bibtex-entry]

1. M.G. Linguraru, M. A. González Ballester, E. Bardinet, D. Galanaud, D. Dormont, J.-P. Brandel, and N. Ayache. Automated Analysis of Basal Ganglia Intensity Distribution in Multisequence MRI of the Brain - Application to Creutzfeldt-Jakob Disease. Research Report RR-5276, INRIA, 2004. [bibtex-entry]



2. E. Bardinet and G. Malandain. Fusion of autoradiographies with an MR volume using 2-D and 3-D linear transformations. Research report RR-4791, INRIA, 2003. Keyword(s): autoradiography, histology, MRI, matching, fusion. [bibtex-entry]



3. Alain Pitiot, Eric Bardinet, P. M. Thompson, and G. Malandain. Automated Piecewise Affine Registration of Biological Images. Research report RR-4866, INRIA, July 2003. Keyword(s): registration, matching, clustering, histology, MRI. [Abstract] [bibtex-entry]



4. Xavier Pennec, Radu Stefanescu, and Eric Bardinet. Rapport d'étude de l'action CNES ``R&T Mise en correspondance''. Technical report, INRIA, October 2002. [bibtex-entry]



5. E. Bardinet, L.D. Cohen, and N. Ayache. Analyzing the deformation of the left ventricle of the heart with a parametric deformable model. Research report RR-2797, INRIA, Sophia-Antipolis, February 1996. [bibtex-entry]



6. E. Bardinet, L.D. Cohen, and N. Ayache. A parametric deformable model to fit unstructured 3D data. Research report RR-2617, INRIA, July 1995. [bibtex-entry]



7. Laurent D. Cohen, Eric Bardinet, and Nicholas Ayache. Surface Reconstruction using Active Contour Models. Research report RR-1824, INRIA, February 1993. [bibtex-entry]

1. D. Galanaud, D. Dormont, J.P. Brandel, M.G. Linguraru, E. Bardinet, and J. Chiras. Exploration des Maladies a Prions par IRM Multimodalitaire. Journées de Neuroradiologie de Langue Française, 2005. Note: Journal of Neuroradiology 32(2):79. [bibtex-entry]



2. M.G. Linguraru, D. Galanaud, D. Dormont, B. Faucheaux, S. Haïk, J.J. Hauw, J. Chiras, E. Bardinet, M.A. González Ballester, P. Cozzone, N. Ayache, and J.P. Brandel. Détection et Quantification Automatique des Hypersignaux en IRM dans la Maladie de Creutzfeldt-Jakob. Journées Françaises de Radiologie, 2004. Note: Journal de Radiologie 85(6):1394. [bibtex-entry]



3. N. Ayache, E. Bardinet, S. Benayoun, H. Delingette, G. Malandain, S. Fernández-Vidal, L. Soler, J. Montagnat, S. Cotin, G. Subsol, and J.-P. Thirion. Analysis of medical images : Registration, Atlas, Motion. Audiovisual material produced by INRIA audiovisuel, 1996. Keyword(s): video, simulation. [bibtex-entry]



4. N. Ayache, E. Bardinet, S. Benayoun, I. Cohen, L.D. Cohen, H. Delingette, J. Feldmar, C. Nastar, G. Subsol, and J.-P. Thirion. Non Rigid Motion (Tracking, Analysis and Simulation). Audiovisual material produced by INRIA audiovisuel, 1994. Keyword(s): video, reconstruction. [bibtex-entry]



5. E. Bardinet. Contour actifs et approximation de surface. Contraintes différentielles dans les modèles numériques de terrain. Rapport de DEA, Université de Paris Dauphine, Septembre 1992. [bibtex-entry]

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