Publications of year 2012

1. Marco Lorenzi. Deformation-based morphometry of the brain for the development of surrogate markers in Alzheimer's disease. Ph.D. Thesis, University of Nice Sophia Antipolis, December 2012. [bibtex-entry]



2. Jatin Relan. Personalised Electrophysiological Models of Ventricular Tachycardia for Radio Frequency Ablation Therapy Planning. Ph.D. Thesis, Ecole Nationale Supérieure des Mines de Paris, June 2012. [bibtex-entry]



3. Christof Seiler. Trees on Geometrical Deformations to Model the Statistical Variability of Organs in Medical Images. Ph.D. Thesis, University of Nice Sophia Antipolis and University of Bern, September 2012. [bibtex-entry]



4. Nicolas Toussaint. Curvilinear Analysis and Approximation of Cardiac DTI In-Vivo. PhD Thesis, King's College London, July 2012. [bibtex-entry]

1. Barbara André, Tom Vercauteren, Anna M. Buchner, Murli Krishna, Nicholas Ayache, and Michael B. Wallace. Software for Automated Classification of probe-based Confocal Laser Endomicroscopy Videos of Colorectal Polyps. World Journal of Gastroenterology, October 2012. [bibtex-entry]



2. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. Learning Semantic and Visual Similarity for Endomicroscopy Video Retrieval. IEEE Transactions on Medical Imaging, 31(6):1276-1288, June 2012. [bibtex-entry]



3. R. Blanc, Christof Seiler, G. Székely, L. Nolte, and Mauricio Reyes. Statistical Model Based Shape Prediction from a Combination of Direct Observations and Various Surrogates. Medical Image Analysis (MedIA), 16(6):1156-1166, 2012. [bibtex-entry]



4. H. Cochet, Y. Komatsu, F. Sacher, A. Jadidi, D. Scherr, M. Riffaud, N. Derval, A. Shah, L. Roten, P. Pascale, Jatin Relan, Maxime Sermesant, Nicholas Ayache, M. Montaudon, F. Laurent, M. Hocini, M. Haïssaguerre, and P. Jaïs. Integration of Merged Delayed-Enhanced Magnetic Resonance Imaging and Multi-Detector Computed Tomography for the Guidance of Ventricular Tachycardia Ablation: A Pilot Study. Journal of Cardiovascular Electrophysiology, 2012. ISSN: 1540-8167. Keyword(s): ventricular tachycardia, MRI, computed tomography, catheter ablation, myocardial infarction, cardiomyopathy. [bibtex-entry]



5. Hervé Delingette, F. Billet, Ken C. L. Wong, Maxime Sermesant, Kawal Rhode, M. Ginks, C. Aldo Rinaldi, Reza Razavi, and Nicholas Ayache. Personalization of Cardiac Motion and Contractility From Images Using Variational Data Assimilation. Biomedical Engineering, IEEE Transactions on, 59(1):20 -24, jan. 2012. ISSN: 0018-9294. [bibtex-entry]



6. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, and José Braga. Comparison of the endocranial ontogenies between chimpanzees and bonobos via temporal regression and spatiotemporal registration. Journal of Human Evolution, 62(1):74 - 88, 2012. ISSN: 0047-2484. Keyword(s): Endocranium. [bibtex-entry]



7. B. Michael Kelm, Frederik O. Kaster, A. Henning, Marc-André Weber, P. Bachert, P. Boesiger, Fred A. Hamprecht, and Bjoern H. Menze. Using spatial prior knowledge in the spectral fitting of MRS images. NMR in Biomedicine, 25(1):1-13, 2012. HAL ID: inria-00616193. [bibtex-entry]



8. Hervé Lombaert, Jean-Marc Peyrat, Pierre Croisille, Stanislas Rapacchi, Laurent Fanton, Farida Cheriet, Patrick Clarysse, Isabelle Magnin, Hervé Delingette, and Nicholas Ayache. Human Atlas of the Cardiac Fiber Architecture: Study on a Healthy Population. IEEE Trans. on Medical Imaging, 31(7):1436-1447, 2012. [bibtex-entry]



9. Stéphanie Marchesseau, Hervé Delingette, Maxime Sermesant, and Nicholas Ayache. Fast Parameter Calibration of a Cardiac Electromechanical Model from Medical Images based on the Unscented Transform. Biomechanics and Modeling in Mechanobiology, 2012. [bibtex-entry]



10. Christophe Person, Valérie Louis-Dorr, Sylvain Poussier, Olivier Commowick, Grégoire Malandain, Louis Maillard, Didier Wolf, Nicolas Gilet, Véronique Roch, Gilles Karcher, and Pierre-Yves Marie. Voxel-based quantitative analysis of brain images from F-18 Fluorodeoxyglucose Positron Emission Tomography with a Block-Matching algorithm for spatial normalization. Clinical Nuclear Medicine, 37(3):268-273, 2012. HAL ID: hal-00651731. [bibtex-entry]



11. M. Pop, Maxime Sermesant, G. Liu, Jatin Relan, Tommaso Mansi, A. Soong, Jean-Marc Peyrat, M.V. Truong, P. Fefer, Elliot R. McVeigh, Hervé Delingette, A.J. Dick, Nicholas Ayache, and G.A Wright. Construction of 3D MR image-based computer models of pathologic hearts, augmented with histology and optical fluorescence imaging to characterize action potential propagation. Medical Image Analysis, 16(2):505-523, February 2012. [bibtex-entry]



12. L. Ritacco, Christof Seiler, G. Farfalli, L. Nolte, Mauricio Reyes, D. Muscolo, and L. Tinao. Validity of an Automatic Measure Protocol in Distal Femur for Allograft Selection from a Three-Dimensional Virtual Bone Bank System. Cell and Tissue Banking, 2012. Note: To appear. [bibtex-entry]



13. Roberta Rossi, Michela Pievani, Marco Lorenzi, Marina Boccardi, Rossella Beneduce, Stefano Bignotti, Genoveffa Borsci, Maria Cotelli, Panteleimon Giannakopoulos, Laura R. Magni, Luciana Rillosi, Sandra Rosini, Giuseppe Rossi, and Giovanni B. Frisoni. Structural brain features of borderline personality and bipolar disorders. Psychiatry Research: Neuroimaging, 12:S0925-4927, 2012. [bibtex-entry]



14. Christof Seiler, A. Gazdhar, Mauricio Reyes, L.M. Benneker, T. Geiser, K.A. Siebenrock, and B. Gantenbein-Ritter. Time-Lapse Microscopy and Classification of 2D Human Mesenchymal Stem Cells Based on Cell Shape Picks Up Myogenic from Osteogenic and Adipogenic Differentiation. Journal of Tissue Engineering and Regenerative Medicine, 2012. Note: To appear. [bibtex-entry]



15. Christof Seiler, Xavier Pennec, and Mauricio Reyes. Capturing the Multiscale Anatomical Shape Variability with Polyaffine Transformation Trees. Medical Image Analysis (MedIA), 16(7):1371-1384, 2012. [bibtex-entry]



16. Maxime Sermesant, R. Chabiniok, P. Chinchapatnam, Tommaso Mansi, F. Billet, P. Moireau, Jean-Marc Peyrat, Ken C. L. Wong, Jatin Relan, Kawal Rhode, M. Ginks, P. Lambiase, Hervé Delingette, M. Sorine, C. Aldo Rinaldi, D. Chapelle, Reza Razavi, and Nicholas Ayache. Patient-specific electromechanical models of the heart for the prediction of pacing acute effects in CRT: A preliminary clinical validation. Medical Image Analysis, 16(1):201-215, 2012. [bibtex-entry]



17. Juliette Thariat, Pierre-Yves Marcy, A. Lacout, Liliane Ramus, T. Girinsky, Y. Pointreau, and Grégoire Malandain. Radiotherapy and radiology: joint efforts for modern radiation planning and practice. Diagn Interv Imaging, 93(5):342-50, May 2012. [Abstract] [bibtex-entry]



18. Juliette Thariat, Liliane Ramus, Philippe Maingon, Guillaume Odin, Vincent Gregoire, Vincent Darcourt, Nicolas Guevara, Marie-Helene Orlanducci, Serge Marcie, Gilles Poissonnet, Pierre-Yves Marcy, Alex Bozec, Olivier Dassonville, Laurent Castillo, Francois Demard, Jose Santini, and Grégoire Malandain. DENTALMAPS: Automatic Dental Delineation for Radiotherapy Planning in Head-and-neck Cancer. Int J Radiat Oncol Biol Phys, 82(5):1858-65, April 2012. [Abstract] [bibtex-entry]



19. Florian Vichot, H. Cochet, Benoit Bleuzé, Nicolas Toussaint, P. Jaïs, and Maxime Sermesant. Cardiac Interventional Guidance using Multimodal Data Processing and Visualisation: medInria as an Interoperability Platform. Midas Journal, 2012. Keyword(s): Standards, Data Formats, Registration, Visualisation. [Abstract] [bibtex-entry]



20. François Faure, Christian Duriez, Hervé Delingette, Jérémie Allard, Benjamin Gilles, Stéphanie Marchesseau, Hugo Talbot, Hadrien Courtecuisse, Guillaume Bousquet, Igor Peterlik, and Stéphane Cotin. SOFA: A Multi-Model Framework for Interactive Physical Simulation. In Yohan Payan, editor, Soft Tissue Biomechanical Modeling for Computer Assisted Surgery. Springer, June 2012. HAL ID: hal-00681539. [bibtex-entry]



21. Xavier Pennec and Vincent Arsigny. Exponential Barycenters of the Canonical Cartan Connection and Invariant Means on Lie Groups. In Frederic Barbaresco, Amit Mishra, and Frank Nielsen, editors, Matrix Information Geometry, pages 123-166. Springer, May 2012. ISBN: 978-3-642-30231-2. HAL ID: hal-00699361. [Abstract] [bibtex-entry]

1. H. Bou-Sleiman, Christof Seiler, T. Iizuka, L. Nolte, and Mauricio Reyes. Population-Based Design of Mandibular Plates Based on Bone Quality and Morphology. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), volume 7510 of LNCS, pages 66-73, October 2012. Springer, Heidelberg. [bibtex-entry]



2. Mathieu De Craene, Pascal Allain, Hang Gao, Adityo Prakosa, Stéphanie Marchesseau, Loic Hilpert, Oudom Somphone, Hervé Delingette, Sherif Makram-Ebeid, Nicolas Villain, Jan D'hooge, Maxime Sermesant, and Eric Saloux. Synthetic and Phantom Setups for the Second cardiac Motion Analysis Challenge (cMAC2). In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenge (STACOM12), LNCS, 2012. Springer. [bibtex-entry]



3. Nicolas Duchateau, Mathieu De Craene, Xavier Pennec, Beatriz Merino, Marta Sitges, and Bart Bijnens. Which Reorientation Framework for the Atlas-Based Comparison of Motion from Cardiac Image Sequences?. In Proc. of STIA 2012 (Spatio-=Temporal Image Analysis for Longitudinal and Time-Series Image Data, volume 7570 of LNCS, pages 25-37, October 2012. Springer, Heidelberg. [bibtex-entry]



4. Ezequiel Geremia, Bjoern H. Menze, and Nicholas Ayache. Spatial Decision Forests for Glioma Segmentation in Multi-Channel MR Images. In MICCAI Challenge on Multimodal Brain Tumor Segmentation, LNCS, October 2012. Springer. [bibtex-entry]



5. Ezequiel Geremia, Bjoern H. Menze, Marcel Prastawa, Marc-André Weber, Antonio Criminisi, and Nicholas Ayache. Brain tumor cell density estimation from multi-modal MR images based on a synthetic tumor growth model. In MICCAI Workshop on Medical Computer Vision, LNCS, October 2012. Springer. [bibtex-entry]



6. Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, and Nicholas Ayache. Current-based 4D shape analysis for the mechanical personalization of heart models. In Proceedings of MCV Workshop at MICCAI 2012, LNCS, October 2012. Springer. [bibtex-entry]



7. Hervé Lombaert, Leo Grady, Xavier Pennec, Nicholas Ayache, and Farida Cheriet. Spectral Demons - Image Registration via Global Spectral Correspondence. In Proc. of ECCV (2), number 7573 of LNCS, pages 30-44, 2012. [bibtex-entry]



8. Hervé Lombaert, Leo Grady, Xavier Pennec, Jean-Marc Peyrat, Nicholas Ayache, and Farida Cheriet. Groupwise Spectral Log-Demons Framework for Atlas Construction. In Medical Computer Vision (MCV'12) MICCAI workshop, 2012. Note: Best paper award. [bibtex-entry]



9. Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. Disentangling the normal aging from the pathological Alzheimer's disease progression on cross-sectional structural MR images. In MICCAI workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders (NIBAD'12), pages 145-154, October 2012. ISBN: 9781479261994. [bibtex-entry]



10. Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. Regional flux analysis of longitudinal atrophy in Alzheimer's disease. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), volume 7510 of LNCS, pages 739-746, October 2012. Springer, Heidelberg. ISBN: 978-3-642-33414-6. [bibtex-entry]



11. Marco Lorenzi, Giovanni B. Frisoni, Nicholas Ayache, and Xavier Pennec. Probabilistic Flux Analysis of Cerebral Longitudinal Atrophy. In MICCAI workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders (NIBAD'12), pages 256-265, October 2012. ISBN: 9781479261994. [bibtex-entry]



12. Stéphanie Marchesseau, Hervé Delingette, Maxime Sermesant, Kawal Rhode, S.G. Duckett, C. Aldo Rinaldi, Reza Razavi, and Nicholas Ayache. Cardiac Mechanical Parameter Calibration based on the Unscented Transform. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), volume 7511 of LNCS, October 2012. Springer, Heidelberg. [bibtex-entry]



13. Kristin McLeod, Adityo Prakosa, Tommaso Mansi, Maxime Sermesant, and Xavier Pennec. An Incompressible Log-Domain Demons Algorithm for Tracking Heart Tissue. In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM11), number 7085 of LNCS, Toronto, pages 55-67, September 2012. Springer. [bibtex-entry]



14. Kristin McLeod, Christof Seiler, Maxime Sermesant, and Xavier Pennec. A Near-Incompressible Poly-Affine Motion Model for Cardiac Function Analysis. In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function + a Cardiac Electrophysiological Simulation Challenge (STACOM+CESC'12), LNCS, Nice, October 2012. Springer. [bibtex-entry]



15. Adityo Prakosa, Kristin McLeod, Maxime Sermesant, and Xavier Pennec. Evaluation of iLogDemons Algorithm for Cardiac Motion Tracking in Synthetic Ultrasound Sequence. In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenge (STACOM12), LNCS, October 2012. Springer. [bibtex-entry]



16. Nicolas Savoire, Barbara André, and Tom Vercauteren. Online Blind Calibration of Non-Uniform Photodetectors: Application to Endomicroscopy. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), LNCS, October 2012. Springer, Heidelberg. Note: To appear. [bibtex-entry]



17. Christof Seiler, Xavier Pennec, and Mauricio Reyes. Simultaneous Multiscale Polyaffine Registration by Incorporating Deformation Statistics. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), volume 7511 of LNCS, pages 130-137, October 2012. Springer, Heidelberg. ISBN: 978-3-642-33417-7. [bibtex-entry]



18. Stefan Sommer, Mads Nielsen, and Xavier Pennec. Sparsity and Scale: Compact Representations of Deformation for Diffeomorphic Registration. In IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2012), Breckenridge, Colorado, USA, January 2012. [Abstract] [bibtex-entry]



19. Erin Stretton, Emmanuel Mandonnet, Ezequiel Geremia, Bjoern H. Menze, Hervé Delingette, and Nicholas Ayache. Predicting the Location of Glioma Recurrence After a Resection Surgery. In Proceedings of 2nd International MICCAI Workshop on Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data (STIA'12), LNCS, Nice, October 2012. Springer. [bibtex-entry]



20. Hugo Talbot, Christian Duriez, Hadrien Courtecuisse, Jatin Relan, Maxime Sermesant, Stéphane Cotin, and Hervé Delingette. Towards Real-Time Computation of Cardiac Electrophysiology for Training Simulator. In Statistical Atlases and Computational Models of the Heart - STACOM 2012 in the 15th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2012, Lecture Notes in Computer Science, Nice, France, October 2012. Springer. [bibtex-entry]



21. Hugo Talbot, Stéphanie Marchesseau, Christian Duriez, Hadrien Courtecuisse, Jatin Relan, Maxime Sermesant, Stéphane Cotin, and Hervé Delingette. Interactive Electromechanical Model of the Heart for Patient-Specific Therapy Planning and Training using SOFA. In Virtual Human Project (VPH), 2012. [bibtex-entry]



22. J. Unkelbach, Bjoern H. Menze, A. Motamedi, F. Dittmann, Ender Konukoglu, Nicholas Ayache, and H. Shih. Glioblastoma growth modeling for radiotherapy target delineation.. In Proc MICCAI Workshop on Image-Guidance and Multimodal Dose Planning in Radiation Therap., pages 12 pages, 2012. [bibtex-entry]



23. Ken C. L. Wong, Jatin Relan, Linwei Wang, Maxime Sermesant, Hervé Delingette, Nicholas Ayache, and Pengcheng Shi. Strain-Based Regional Nonlinear Cardiac Material Properties Estimation From Medical Images. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), LNCS, October 2012. Springer, Heidelberg. Note: To appear. [bibtex-entry]

1. Martin W. Krueger, Jatin Relan, Zhong Chen, Maxime Sermesant, Nicholas Ayache, Gunnar Seemann, Olaf Dössel, Nick Linton, C. Aldo Rinaldi, Reza Razavi, Kawal Rhode, and Hervé Delingette. Evaluation of RFA planning based on biophysical models. Deliverables D6.3.3, European project euHeart, May 2012. [bibtex-entry]

1. Xavier Pennec. Program of the MICCAI 2012 Workshops, Challenges and Tutorials. Printed booklet distributed to 967 participants, Nice, October 2012. Note: 90 pages. [bibtex-entry]

1. Barbara André, Tom Vercauteren, Anna M. Buchner, Murli Krishna, Nicholas Ayache, and Michael B. Wallace. Comparison of a Classification Software based on Image Retrieval with the Off-Line Diagnosis of Expert Endoscopists for probe-based Confocal Laser Endomicroscopy (pCLE) of Colorectal Polyps. Gastrointestinal Endoscopy (DDW 2012), 2012. Note: In press. [bibtex-entry]



2. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. Image-based Semantic Learning Software for Automatic Detection of Discriminative Criteria used for probe-based Confocal Laser Endomicroscopy (pCLE) Diagnosis of Colorectal Polyps. Gastrointestinal Endoscopy (DDW 2012), 2012. Note: In press. [bibtex-entry]



3. Marine Breuilly, Grégoire Malandain, Nicholas Ayache, Jacques Darcourt, Thierry Pourcher, and Philippe Franken. Simulated breath-hold reconstruction in micro-SPECT: Application to peritoneal metastases expressing NIS as reporter gene, 2012. [bibtex-entry]



4. Marine Breuilly, Grégoire Malandain, Nicholas Ayache, Philippe Franken, Jacques Darcourt, and Thierry Pourcher. Simulated breath-hold reconstruction in micro-SPECT: application to peritoneal metastases expressing NIS as reporter gene. 2nd second Molecular Imaging in Biology and Oncology (MIBO) workshop (MIBO2012), Nice, January 2012. [bibtex-entry]



5. Marine Breuilly, Grégoire Malandain, Jacques Darcourt, Thierry Pourcher, and Philippe Franken. Prise en compte du mouvement respiratoire du petit animal pour la reconstruction 3D TEMP synchronisée : application aux métastases péritonéales, 2012. Note: 50e colloque de Médecine Nucléaire de Langue Françcaise. ISSN: 0928-1258. [bibtex-entry]



6. Vikash Gupta, Nicholas Ayache, and Xavier Pennec. Towards higher resolution analysis of Clinical Brain Diffusion Images. 1st International Symposium on Deep Brain Connectomics, Clermon-Ferrand, France, September 2012. [bibtex-entry]



7. Marco Lorenzi, Nicholas Ayache, Xavier Pennec, Giovanni B. Frisoni, and for the Alzheimer's Disease Neuroimaging Initiative (ADNI). Differentiating pathological brain atrophy from normal aging: a promising diagnostic tool for Alzheimer's disease. 2nd Virtual Physiological Human European Conference (VPH2012), London, September 2012. [bibtex-entry]



8. Marco Lorenzi, Nicholas Ayache, Xavier Pennec, Giovanni B. Frisoni, and for the Alzheimer's Disease Neuroimaging Initiative (ADNI). Disentangling the normal aging from the pathological Alzheimer's disease progression on structural MR images. 5th Clinical Trials in Alzheimer's Disease (CTAD'12), Monte Carlo, October 2012. [bibtex-entry]



9. Xavier Pennec and the MICCAI Workshops / Challenges / Tutorials Organizers. Proceedings of the MICCAI 2012 Workshops, Challenges and Tutorials. USB key distributed to 967 participants, October 2012. Note: 4080 pages. [bibtex-entry]

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