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Publications of year 2010

Books and proceedings

  1. Oscar Camara, M. Pop, Kawal Rhode, Maxime Sermesant, Nic Smith, and Alistair A. Young, editors. Statistical Atlases and Computational Models of the Heart, First International Workshop, STACOM 2010, and Cardiac Electrophysiological Simulation Challenge, CESC 2010, volume 6364 of LNCS, 2010. Springer. Note: Held in Conjunction with MICCAI 2010, Beijing, China, September 20, 2010. ISBN: 978-3-642-15834-6.
    @proceedings{STACOM:2010,
    booktitle = {STACOM/CESC},
    editor = {Oscar Camara and M. Pop and Kawal Rhode and Maxime Sermesant and Nic Smith and Alistair A. Young},
    isbn = {978-3-642-15834-6},
    note = {Held in Conjunction with MICCAI 2010, Beijing, China, September 20, 2010},
    pages = {292},
    publisher = {Springer},
    series = {LNCS},
    title = {Statistical Atlases and Computational Models of the Heart, First International Workshop, STACOM 2010, and Cardiac Electrophysiological Simulation Challenge, CESC 2010},
    url-hal = {https://hal.inria.fr/inria-00616062},
    volume = {6364},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  2. Bjoern H. Menze, Georg Langs, Zhuowen Tu, and Antonio Criminisi, editors. Medical Computer Vision: Recognition techniques and applications in medical imaging -- MICCAI-MCV 2010, volume 6533 of LNCS, Beijing, China, December 2010. Springer.
    @proceedings{miccai-mcv:2010,
    address = {Beijing, China},
    editor = {Bjoern H. Menze and Georg Langs and Zhuowen Tu and Antonio Criminisi},
    month = {December},
    publisher = {Springer},
    series = {LNCS},
    title = {Medical Computer Vision: Recognition techniques and applications in medical imaging -- MICCAI-MCV 2010},
    url-hal = {https://hal.inria.fr/inria-00616061},
    volume = {6533},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {US,GB},
    x-proceedings = {yes},
    year = {2010} 
    }
    


Thesis

  1. Florence Billet. Assimilation de données images pour la personnalisation d'un modèle électromécanique du coeur. Thèse de sciences (PhD Thesis), Université Nice Sophia-Antipolis, July 2010.
    @phdthesis{Billet:PhD:10,
    author = {Florence Billet},
    month = {July},
    school = {Universit\'e Nice Sophia-Antipolis},
    title = {Assimilation de donn\'ees images pour la personnalisation d'un mod\`ele \'electrom\'ecanique du coeur},
    type = {Th\`ese de sciences (PhD Thesis)},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Delingette/billetThese.pdf},
    year = {2010} 
    }
    


  2. Stanley Durrleman. Statistical models of currents for measuring the variability of anatomical curves, surfaces and their evolution. Thèse de sciences (PhD Thesis), Université de Nice-Sophia Antipolis, March 2010.
    @phdthesis{Durrleman:PhD:10,
    author = {Stanley Durrleman},
    month = {March},
    school = {Universit\'e de Nice-Sophia Antipolis},
    title = {Statistical models of currents for measuring the variability of anatomical curves, surfaces and their evolution},
    type = {Th\`ese de sciences (PhD Thesis)},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Stanley.Durrleman/Durrleman_thesis.pdf},
    url-hal = {https://tel.archives-ouvertes.fr/tel-00631382},
    x-international-audience = {yes},
    year = {2010} 
    }
    


  3. Romain Fernandez. Reconstruction tridimensionnelle et suivi de lignées cellulaires à partir d'images de microscopie laser : application à des tissus végétaux. Thèse de sciences, Université Montpellier 2, November 2010.
    @phdthesis{fernandez:phd:2010,
    author = {Romain Fernandez},
    month = {November},
    school = {Universit\'e Montpellier 2},
    title = {Reconstruction tridimensionnelle et suivi de lign\'ees cellulaires \`a partir d'images de microscopie laser : application \`a des tissus v\'eg\'etaux},
    type = {Th\`ese de sciences},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Gregoire.Malandain/fernandez-phd-2010.pdf},
    year = {2010} 
    }
    


  4. Heike Hufnagel. A probabilistic framework for point-based shape modeling in medical image analysis. PhD Thesis, University of Lübeck, July 2010.
    @phdthesis{Hufnagel:PhD:2010,
    author = {Heike Hufnagel},
    month = {July},
    school = {University of L\"ubeck},
    title = {A probabilistic framework for point-based shape modeling in medical image analysis},
    type = {PhD Thesis},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Heike.Hufnagel/Hufnagel_PhD.pdf},
    url-hal = {https://tel.archives-ouvertes.fr/tel-00844717},
    x-international-audience = {yes},
    year = {2010} 
    }
    


  5. Tommaso Mansi. Image-Based Physiological and Statistical Models of the Heart, Application to Tetralogy of Fallot. Thèse de sciences (PhD Thesis), Ecole Nationale Supérieure des Mines de Paris, September 2010.
    @phdthesis{Mansi:PhD:10,
    author = {Tommaso Mansi},
    hal-identifiant = {tel-00530956},
    month = {September},
    school = {Ecole Nationale Sup\'erieure des Mines de Paris},
    title = {Image-Based Physiological and Statistical Models of the Heart, Application to Tetralogy of Fallot},
    type = {Th\`ese de sciences (PhD Thesis)},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Tommaso.Mansi/mansi_thesis.pdf},
    url-hal = {http://hal.inria.fr/tel-00530956/en/},
    x-international-audience = {yes},
    year = {2010} 
    }
    


Articles in journal, book chapters

  1. M Cohen, C Lebrun, D Aufauvre, S Chanalet, C Filleau-Bertogliatti, W Camu, P Thomas, G Malandain, and P Clavelou. [Longitudinal study of health related quality of life in multiple sclerosis: correlation with MRI parameters]. Rev Neurol (Paris), 166(11):894-900, November 2010. Note: [In French]. Keyword(s): Adolescent, Adult, Atrophy, Brain, pathology, Cognition, physiology, Contrast Media, Disease Progression, Female, Gadolinium, Humans, Image Processing Computer-Assisted, Interferon Type I, therapeutic use, Longitudinal Studies, Magnetic Resonance Imaging, Male, Middle Aged, Multiple Sclerosis Chronic Progressive, pathology, Neuropsychological Tests, Quality of Life, Recombinant Proteins, Young Adult.
    Abstract:
    INTRODUCTION: Health related quality of life (HRQOL) is often affected in multiple sclerosis (MS). Nevertheless, to our knowledge, there is no longitudinal study in the literature about the correlation between MRI parameters and HRQOL in MS patients. METHODS: We included 28 patients with clinically definite relapsing remitting MS. All patients initiated subcutaneous interferon beta-1a therapy. To assess HRQOL, we used the SEP-59 scale, the French validated translation of MSQOL-54, and the MusiQoL scale. Conventional MRI was performed every year. Lesion load (LL) and brain atrophy were automatically measured using SepINRIA, a free software developed by INRIA in Sophia Antipolis. RESULTS: The mean EDSS score was 1.7 and disease duration was 2.5 years. Our results revealed that HRQOL was significantly correlated to T1 and T2-LL with both SEP-59 and MusiQoL scales. T1-LL was better correlated with physical dimensions and T2-LL was better correlated with mental components. At 1-year follow-up, patients whose MRI showed either an increase of T1 LL or at least one gadolinium enhancing lesion had a worse HRQOL at the end of the study. Initial brain parenchymal fraction (BPF) measure was also correlated with the long-term follow-up HRQOL. EDSS scored at the end of the study had not significantly changed (1.3; P>0.05). CONCLUSION: Our study revealed pertinent clinicoradiological correlations between HRQOL and MRI parameters in our cohort.

    @article{cohen:rn:2010,
    abstract = {INTRODUCTION: Health related quality of life (HRQOL) is often affected in multiple sclerosis (MS). Nevertheless, to our knowledge, there is no longitudinal study in the literature about the correlation between MRI parameters and HRQOL in MS patients. METHODS: We included 28 patients with clinically definite relapsing remitting MS. All patients initiated subcutaneous interferon beta-1a therapy. To assess HRQOL, we used the SEP-59 scale, the French validated translation of MSQOL-54, and the MusiQoL scale. Conventional MRI was performed every year. Lesion load (LL) and brain atrophy were automatically measured using SepINRIA, a free software developed by INRIA in Sophia Antipolis. RESULTS: The mean EDSS score was 1.7 and disease duration was 2.5 years. Our results revealed that HRQOL was significantly correlated to T1 and T2-LL with both SEP-59 and MusiQoL scales. T1-LL was better correlated with physical dimensions and T2-LL was better correlated with mental components. At 1-year follow-up, patients whose MRI showed either an increase of T1 LL or at least one gadolinium enhancing lesion had a worse HRQOL at the end of the study. Initial brain parenchymal fraction (BPF) measure was also correlated with the long-term follow-up HRQOL. EDSS scored at the end of the study had not significantly changed (1.3; P>0.05). CONCLUSION: Our study revealed pertinent clinicoradiological correlations between HRQOL and MRI parameters in our cohort.},
    author = {M Cohen and C Lebrun and D Aufauvre and S Chanalet and C Filleau-Bertogliatti and W Camu and P Thomas and G Malandain and P Clavelou},
    doi = {10.1016/j.neurol.2010.06.002},
    journal = {Rev Neurol (Paris)},
    keywords = {Adolescent, Adult, Atrophy, Brain, pathology, Cognition, physiology, Contrast Media, Disease Progression, Female, Gadolinium, Humans, Image Processing Computer-Assisted, Interferon Type I, therapeutic use, Longitudinal Studies, Magnetic Resonance Imaging, Male, Middle Aged, Multiple Sclerosis Chronic Progressive, pathology, Neuropsychological Tests, Quality of Life, Recombinant Proteins, Young Adult},
    month = {November},
    note = {[In French]},
    number = {11},
    pages = {894-900},
    pmid = {20728910},
    title = {[Longitudinal study of health related quality of life in multiple sclerosis: correlation with MRI parameters]},
    url-hal = {https://hal.inria.fr/hal-00813767},
    volume = {166},
    year = {2010} 
    }
    


  2. Hervé Delingette and Maxime Sermesant. Le coeur numérique. Doc Sciences, 13:26-33, October 2010.
    @article{Delingette:DocSciences:2010,
    author = {Herv\'e Delingette and Maxime Sermesant},
    journal = {Doc Sciences},
    month = {October},
    pages = {26-33},
    title = {Le coeur num\'erique},
    volume = {13},
    x-editorial-board = {no},
    x-international-audience = {no},
    x-scientific-popularization = {yes},
    year = {2010} 
    }
    


  3. Romain Fernandez, Pradeep Das, Vincent Mirabet, Eric Moscardi, Jan Traas, Jean-Luc Verdeil, Grégoire Malandain, and Christophe Godin. Imaging plant growth in 4-D: robust tissue reconstruction and lineaging at cell resolution. Nature Methods, 7(7):547-553, 2010.
    Abstract:
    Acquiring quantitative information on growing organs is an absolute requirement for a better understanding of morphogenesis in both plants and animals. However, detailed analyses of growth patterns at cellular resolution have remained elusive. To address this, we have designed a novel protocol where we image whole organs from multiple angles, and then computationally merge and segment these images to provide accurate cell identification within high-resolution 3-D reconstructions. We then extend this protocol to study growing organs in 4-D by using a temporal series of such reconstructions to automatically track cell lineages through multiple rounds of cell division during organ development. Using these methods, we carry out quantitative analyses of Arabidopsis flower development at cell resolution, and reveal differential growth patterns of key regions during the early stages of floral morphogenesis that were previously inaccessible. Lastly, using rice roots, we demonstrate that our approach is both generic and scalable.

    @article{fernandez:nm:2010,
    abstract = {Acquiring quantitative information on growing organs is an absolute requirement for a better understanding of morphogenesis in both plants and animals. However, detailed analyses of growth patterns at cellular resolution have remained elusive. To address this, we have designed a novel protocol where we image whole organs from multiple angles, and then computationally merge and segment these images to provide accurate cell identification within high-resolution 3-D reconstructions. We then extend this protocol to study growing organs in 4-D by using a temporal series of such reconstructions to automatically track cell lineages through multiple rounds of cell division during organ development. Using these methods, we carry out quantitative analyses of Arabidopsis flower development at cell resolution, and reveal differential growth patterns of key regions during the early stages of floral morphogenesis that were previously inaccessible. Lastly, using rice roots, we demonstrate that our approach is both generic and scalable.},
    author = {Romain Fernandez and Pradeep Das and Vincent Mirabet and Eric Moscardi and Jan Traas and Jean-Luc Verdeil and Gr\'egoire Malandain and Christophe Godin},
    doi = {10.1038/nmeth.1472},
    hal-identifiant = {hal-00521491},
    journal = {Nature Methods},
    number = {7},
    pages = {547-553},
    title = {Imaging plant growth in 4-D: robust tissue reconstruction and lineaging at cell resolution},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Gregoire.Malandain/fernandez-nm-2010.pdf},
    url-hal = {https://hal.archives-ouvertes.fr/hal-00521491},
    volume = {7},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    year = {2010} 
    }
    


  4. Damien Galanaud, Stéphane Haik, Marius George Linguraru, Jean-Philippe Ranjeva, Baptiste Faucheux, Elsa Kaphan, Nicholas Ayache, Jacques Chiras, Patrick Cozzone, Didier Dormont, and Jean-Philippe Brandel. Combined diffusion imaging and MR Spectroscopy in Human Prion Diseases. AJNR. American journal of neuroradiology, 31(7):1311-8, 2010.
    Abstract:
    BACKGROUND AND PURPOSE: The physiopathologic bases underlying the signal intensity changes and reduced diffusibility observed in prion diseases (TSEs) are still poorly understood. We evaluated the interest of MRS combined with DWI both as a diagnostic tool and a way to understand the mechanism underlying signal intensity and ADC changes in this setting. MATERIALS AND METHODS: We designed a prospective study of multimodal MR imaging in patients with suspected TSEs. Forty-five patients with a suspicion of TSE and 11 age-matched healthy volunteers were included. The MR imaging protocol included T1, FLAIR, and DWI sequences. MRS was performed on the cerebellum, pulvinar, right lenticular nucleus, and frontal cortex. MR images were assessed visually, and ADC values were calculated. RESULTS: Among the 45 suspected cases, 31 fulfilled the criteria for probable or definite TSEs (19 sCJDs, 3 iCJDs, 2 vCJDs, and 7 genetic TSEs); and 14 were classified as AltDs. High signals in the cortex and/or basal ganglia were observed in 26/31 patients with TSEs on FLAIR and 29/31 patients on DWI. In the basal ganglia, high DWI signals corresponded to a decreased ADC. Metabolic alterations, increased mIns, and decreased NAA were observed in all patients with TSEs. ADC values and metabolic changes were not correlated; this finding suggests that neuronal stress (vacuolization), neuronal loss, and astrogliosis do not alone explain the decrease of ADC. CONCLUSIONS: MRS combined with other MR imaging is of interest in the diagnosis of TSE and provides useful information for understanding physiopathologic processes underlying prion diseases.

    @article{galanaud:ajnr:2010,
    abstract = {BACKGROUND AND PURPOSE: The physiopathologic bases underlying the signal intensity changes and reduced diffusibility observed in prion diseases (TSEs) are still poorly understood. We evaluated the interest of MRS combined with DWI both as a diagnostic tool and a way to understand the mechanism underlying signal intensity and ADC changes in this setting. MATERIALS AND METHODS: We designed a prospective study of multimodal MR imaging in patients with suspected TSEs. Forty-five patients with a suspicion of TSE and 11 age-matched healthy volunteers were included. The MR imaging protocol included T1, FLAIR, and DWI sequences. MRS was performed on the cerebellum, pulvinar, right lenticular nucleus, and frontal cortex. MR images were assessed visually, and ADC values were calculated. RESULTS: Among the 45 suspected cases, 31 fulfilled the criteria for probable or definite TSEs (19 sCJDs, 3 iCJDs, 2 vCJDs, and 7 genetic TSEs); and 14 were classified as AltDs. High signals in the cortex and/or basal ganglia were observed in 26/31 patients with TSEs on FLAIR and 29/31 patients on DWI. In the basal ganglia, high DWI signals corresponded to a decreased ADC. Metabolic alterations, increased mIns, and decreased NAA were observed in all patients with TSEs. ADC values and metabolic changes were not correlated; this finding suggests that neuronal stress (vacuolization), neuronal loss, and astrogliosis do not alone explain the decrease of ADC. CONCLUSIONS: MRS combined with other MR imaging is of interest in the diagnosis of TSE and provides useful information for understanding physiopathologic processes underlying prion diseases.},
    author = {Damien Galanaud and St\'ephane Haik and Marius George Linguraru and Jean-Philippe Ranjeva and Baptiste Faucheux and Elsa Kaphan and Nicholas Ayache and Jacques Chiras and Patrick Cozzone and Didier Dormont and Jean-Philippe Brandel},
    journal = {AJNR. American journal of neuroradiology},
    number = {7},
    pages = {1311-8},
    title = {Combined diffusion imaging and MR Spectroscopy in Human Prion Diseases},
    url = {http://www-sop.inria.fr/asclepios/Publications/Linguraru/Galanaud-et-al-AJNR2010.pdf},
    url-publisher = {http://www.ajnr.org/content/31/7/1311.abstract},
    volume = {31},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    year = {2010} 
    }
    


  5. D. Gianni, S. McKeever, T. Yu, R. Britten, Hervé Delingette, A. Frangi, P. Hunter, and Nic Smith. Sharing and reusing cardiovascular anatomical models over the Web: a step towards the implementation of the virtual physiological human project. Philos Transact of the Royal Society A Mathematical Physical Engineering Sciences, 368:3039-3056, June 2010.
    @article{Gianni:PTAMPES:10,
    author = {D. Gianni and S. McKeever and T. Yu and R. Britten and Herv\'e Delingette and A. Frangi and P. Hunter and Nic Smith},
    doi = {10.1098/rsta.2010.0025},
    journal = {Philos Transact of the Royal Society A Mathematical Physical Engineering Sciences},
    month = {June},
    pages = {3039--3056},
    title = {Sharing and reusing cardiovascular anatomical models over the Web: a step towards the implementation of the virtual physiological human project},
    url = {http://www-sop.inria.fr/members/Herve.Delingette/Publications/CardiacModelsDatabase.pdf},
    url-hal = {https://hal.inria.fr/inria-00616110},
    volume = {368},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {GB,ES},
    year = {2010} 
    }
    


  6. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating Glioma Invasion Margin in Brain Magnetic Resonance Images: Suggesting New Irradiation Margins. Medical Image Analysis, 14(2):111-125, 2010.
    @article{Konukoglu:MEDIA:09,
    author = {Ender Konukoglu and Olivier Clatz and Pierre-Yves Bondiau and Herv\'e Delingette and Nicholas Ayache},
    journal = {Medical Image Analysis},
    number = {2},
    pages = {111-125},
    title = {Extrapolating Glioma Invasion Margin in Brain Magnetic Resonance Images: Suggesting New Irradiation Margins},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Ender.Konukoglu/MEDIA2009_konukoglu_extrapolation.pdf},
    url-hal = {https://hal.inria.fr/inria-00616107},
    volume = {14},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    year = {2010} 
    }
    


  7. Ender Konukoglu, Olivier Clatz, Bjoern H. Menze, Marc-André Weber, Bram Stieltjes, Emmanuel Mandonnet, Hervé Delingette, and Nicholas Ayache. Image Guided Personalization of Reaction-Diffusion Type Tumor Growth Models Using Modified Anisotropic Eikonal Equations. IEEE Transactions on Medical Imaging, 29(1):77-95, 2010.
    @article{Konukoglu:TMI:09,
    author = {Ender Konukoglu and Olivier Clatz and Bjoern H. Menze and Marc-Andr\'e Weber and Bram Stieltjes and Emmanuel Mandonnet and Herv\'e Delingette and Nicholas Ayache},
    journal = {IEEE Transactions on Medical Imaging},
    number = {1},
    pages = {77-95},
    title = {Image Guided Personalization of Reaction-Diffusion Type Tumor Growth Models Using Modified Anisotropic Eikonal Equations},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Ender.Konukoglu/TMI2009_konukoglu_InverseProblem.pdf},
    url-hal = {https://hal.inria.fr/inria-00616100},
    volume = {29},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {DE,US},
    year = {2010} 
    }
    


  8. Marco Lorenzi, Michael Donohue, Donata Paternico, Cristina Scarpazza, Susanne Ostrowitzki, Olivier Blin, Elaine Irving, and G. Frisoni. Enrichment through biomarkers in clinical trials of Alzheimer's drugs in patients with mild cognitive impairment. Neurobiology of Aging, pp 1443-51, August 2010. Note: Special Issue on ADNI.
    @article{Lorenzi:NBoA:10,
    author = {Marco Lorenzi and Michael Donohue and Donata Paternico and Cristina Scarpazza and Susanne Ostrowitzki and Olivier Blin and Elaine Irving and G. Frisoni},
    journal = {Neurobiology of Aging},
    month = {August},
    note = {Special Issue on ADNI},
    pages = {1443-51},
    title = {Enrichment through biomarkers in clinical trials of Alzheimer's drugs in patients with mild cognitive impairment},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Marco.Lorenzi/Lorenzi_NBoA_2010.pdf},
    url-hal = {https://hal.inria.fr/hal-00813773},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {IT},
    year = {2010} 
    }
    


  9. Stéphanie Marchesseau, T. Heimann, Simon Chatelin, Rémy Willinger, and Hervé Delingette. Fast porous visco-hyperelastic soft tissue model for surgery simulation: application to liver surgery. Progress in Biophysics and Molecular Biology, 103(2-3):185-196, 2010.
    @article{Marchesseau:PBMB:10,
    author = {St\'ephanie Marchesseau and T. Heimann and Simon Chatelin and R\'emy Willinger and Herv\'e Delingette},
    doi = {10.1016/j.pbiomolbio.2010.09.005},
    hal-identifiant = {hal-00593223},
    journal = {Progress in Biophysics and Molecular Biology},
    number = {2-3},
    pages = {185-196},
    title = {Fast porous visco-hyperelastic soft tissue model for surgery simulation: application to liver surgery},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Stephanie.Marchesseau/PBMB-Marchesseau-2010.pdf},
    url-hal = {https://hal.archives-ouvertes.fr/hal-00593223},
    volume = {103},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    year = {2010} 
    }
    


  10. Markand D. Patel, Nicolas Toussaint, Geoffrey D. Charles-Edwards, Jean-Pierre Lin, and Philip G. Batchelor. Distribution and Fibre Field Similarity Mapping of the Human Anterior Commissure Fibres by Diffusion Tensor Imaging. Magnetic Resonance Materials in Physics, Biology and Medicine, February 2010.
    @article{Toussaint:MAGMA:10,
    author = {Markand D. Patel and Nicolas Toussaint and Geoffrey D. Charles-Edwards and Jean-Pierre Lin and Philip G. Batchelor},
    doi = {10.1007/s10334-010-0201-3},
    journal = {Magnetic Resonance Materials in Physics, Biology and Medicine},
    month = {February},
    pmid = {20229087},
    title = {Distribution and Fibre Field Similarity Mapping of the Human Anterior Commissure Fibres by Diffusion Tensor Imaging},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Nicolas.Toussaint/Toussaint.MAGMA.10.pdf},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {GB},
    x-scientific-popularization = {no},
    year = {2010} 
    }
    


  11. Jean-Marc Peyrat, Hervé Delingette, Maxime Sermesant, Chenyang Xu, and Nicholas Ayache. Registration of 4D Cardiac CT Sequences Under Trajectory Constraints With Multichannel Diffeomorphic Demons. IEEE Transactions on Medical Imaging, 29(7):1351-1368, July 2010.
    @article{Peyrat:TMI:2010,
    author = {Jean-Marc Peyrat and Herv\'e Delingette and Maxime Sermesant and Chenyang Xu and Nicholas Ayache},
    doi = {10.1109/TMI.2009.2038908},
    journal = {IEEE Transactions on Medical Imaging},
    month = {July},
    number = {7},
    pages = {1351-1368},
    title = {Registration of 4D Cardiac CT Sequences Under Trajectory Constraints With Multichannel Diffeomorphic Demons},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Jean-Marc.Peyrat/Peyrat_2010_TMI.pdf},
    url-hal = {https://hal.inria.fr/inria-00616101},
    volume = {29},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {US},
    year = {2010} 
    }
    


  12. Liliane Ramus, Juliette Thariat, Pierre-Yves Marcy, Yoann Pointreau, Guillaume Bera, Olivier Commowick, and Grégoire Malandain. Outils de contourage, utilisation et construction d'atlas anatomiques : exemples des cancers de la tete et du cou. Cancer radiothérapie, 14(3):206-12, 2010. Note: In French.
    Abstract:
    Highly conformal irradiation techniques are associated with steep gradient doses. Accuracy and reproducibility of delineation are required to avoid geometric misses and to properly report dose-volume effects on organs at risk. Guidelines of the International Commission on Radiation Units have largely contributed to high quality treatments. The ICRU endeavors to collect and evaluate the latest data and information pertinent to the problems of radiation measurement and dosimetry. There remains a need for delineation guidelines and automatic segmentation tools in routine practice. Among these tools, atlas-based segmentation has been shown to provide promising results. The methodology used for head and neck cancer patients is illustrated.

    @article{Ramus:CancerRadiother:2010,
    abstract = {Highly conformal irradiation techniques are associated with steep gradient doses. Accuracy and reproducibility of delineation are required to avoid geometric misses and to properly report dose-volume effects on organs at risk. Guidelines of the International Commission on Radiation Units have largely contributed to high quality treatments. The ICRU endeavors to collect and evaluate the latest data and information pertinent to the problems of radiation measurement and dosimetry. There remains a need for delineation guidelines and automatic segmentation tools in routine practice. Among these tools, atlas-based segmentation has been shown to provide promising results. The methodology used for head and neck cancer patients is illustrated.},
    author = {Liliane Ramus and Juliette Thariat and Pierre-Yves Marcy and Yoann Pointreau and Guillaume Bera and Olivier Commowick and Gr\'egoire Malandain},
    hal-identifiant = {inria-00616098},
    journal = {Cancer radioth\'erapie},
    note = {In French},
    number = {3},
    pages = {206-12},
    title = {Outils de contourage, utilisation et construction d'atlas anatomiques : exemples des cancers de la tete et du cou},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Liliane.Ramus/cancerRadiotherapie10_lramus.pdf},
    url-hal = {https://hal.inria.fr/inria-00616098},
    volume = {14},
    x-editorial-board = {yes},
    x-international-audience = {no},
    year = {2010} 
    }
    


  13. Tammy Riklin-Raviv, Koen Van Leemput, Bjoern H. Menze, William M. Wells, and Polina Golland. Segmentation of image ensembles via latent atlases. Medical Image Analysis, 14(5):654-65, 2010.
    @article{Riklin-Raviv:MedIA:2010,
    author = {Tammy Riklin-Raviv and Van Leemput, Koen and Bjoern H. Menze and William M. Wells and Polina Golland},
    journal = {Medical Image Analysis},
    number = {5},
    pages = {654-65},
    title = {Segmentation of image ensembles via latent atlases},
    url = {http://people.csail.mit.edu/polina/papers/RiklinRaviv-MedIA-2010.pdf},
    volume = {14},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {US},
    year = {2010} 
    }
    


  14. Boon Thye Thomas Yeo, Mert Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl, and Polina Golland. Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration. IEEE Transactions on Medical Imaging, 29(3):650-668, March 2010. Note: PMID:19709963.
    Abstract:
    We present the Spherical Demons algorithm for registering two spherical images. By exploiting spherical vector spline interpolation theory, we show that a large class of regularizors for the modified Demons objective function can be efficiently approximated on the sphere using iterative smoothing. Based on one parameter subgroups of diffeomorphisms, the resulting registration is diffeomorphic and fast. The Spherical Demons algorithm can also be modified to register a given spherical image to a probabilistic atlas. We demonstrate two variants of the algorithm corresponding to warping the atlas or warping the subject. Registration of a cortical surface mesh to an atlas mesh, both with more than 160k nodes requires less than 5 minutes when warping the atlas and less than 3 minutes when warping the subject on a Xeon 3.2GHz single processor machine. This is comparable to the fastest non-diffeomorphic landmarkfree surface registration algorithms. Furthermore, the accuracy of our method compares favorably to the popular FreeSurfer registration algorithm. We validate the technique in two different applications that use registration to transfer segmentation labels onto a new image: (1) parcellation of in-vivo cortical surfaces and (2) Brodmann area localization in ex-vivo cortical surfaces.

    @article{Yeo:TMI:10,
    abstract = {We present the Spherical Demons algorithm for registering two spherical images. By exploiting spherical vector spline interpolation theory, we show that a large class of regularizors for the modified Demons objective function can be efficiently approximated on the sphere using iterative smoothing. Based on one parameter subgroups of diffeomorphisms, the resulting registration is diffeomorphic and fast. The Spherical Demons algorithm can also be modified to register a given spherical image to a probabilistic atlas. We demonstrate two variants of the algorithm corresponding to warping the atlas or warping the subject. Registration of a cortical surface mesh to an atlas mesh, both with more than 160k nodes requires less than 5 minutes when warping the atlas and less than 3 minutes when warping the subject on a Xeon 3.2GHz single processor machine. This is comparable to the fastest non-diffeomorphic landmarkfree surface registration algorithms. Furthermore, the accuracy of our method compares favorably to the popular FreeSurfer registration algorithm. We validate the technique in two different applications that use registration to transfer segmentation labels onto a new image: (1) parcellation of in-vivo cortical surfaces and (2) Brodmann area localization in ex-vivo cortical surfaces.},
    author = {Boon Thye Thomas Yeo and Mert Sabuncu and Tom Vercauteren and Nicholas Ayache and Bruce Fischl and Polina Golland},
    doi = {10.1109/TMI.2009.2030797},
    journal = {IEEE Transactions on Medical Imaging},
    month = {March},
    note = {PMID:19709963},
    number = {3},
    pages = {650--668},
    title = {Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration},
    url = {http://people.csail.mit.edu/ythomas/publications/2010SphericalDemons-TMI.pdf},
    url-hal = {https://hal.inria.fr/inria-00616102},
    url-publisher = {http://sites.google.com/site/yeoyeo02/software/sphericaldemonsrelease},
    volume = {29},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {US},
    year = {2010} 
    }
    


  15. Ender Konukoglu, Olivier Clatz, Hervé Delingette, and Nicholas Ayache. Personalization of Reaction-Diffusion Tumor Growth Models in MR Images: Application to Brain Gliomas Characterization and Radiotherapy Planning. In Thomas S. Deisboeck and Georgios Stamatakos, editors, Multiscale Cancer Modeling, Chapman & Hall/CRC Mathematical & Computational Biology. CRC Press, December 2010.
    @incollection{Konukoglu:MCM:2010,
    author = {Ender Konukoglu and Olivier Clatz and Herv\'e Delingette and Nicholas Ayache},
    booktitle = {Multiscale Cancer Modeling},
    editor = {Thomas S. Deisboeck and Georgios Stamatakos},
    month = {December},
    publisher = {CRC Press},
    series = {Chapman {\&} Hall/CRC Mathematical {\&} Computational Biology},
    title = {Personalization of Reaction-Diffusion Tumor Growth Models in MR Images: Application to Brain Gliomas Characterization and Radiotherapy Planning},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Ender.Konukoglu/nih-cvit-chapter.pdf},
    url-hal = {https://hal.inria.fr/inria-00616111},
    x-international-audience = {yes},
    year = {2010} 
    }
    


  16. Maxime Sermesant and Reza Razavi. Personalized Computational Models of the Heart for Cardiac Resynchronization Therapy. In Roy C.P. Kerckhoffs, editor, Patient-Specific Modeling of the Cardiovascular System, pages 167-182. Springer New York, 2010. ISBN: 978-1-4419-6691-9. Keyword(s): Life Sciences.
    @incollection{Sermesant:CRTbook:2010,
    author = {Maxime Sermesant and Reza Razavi},
    booktitle = {Patient-Specific Modeling of the Cardiovascular System},
    doi = {10.1007/978-1-4419-6691-9_10},
    editor = {Roy C.P. Kerckhoffs},
    isbn = {978-1-4419-6691-9},
    keywords = {Life Sciences},
    pages = {167-182},
    publisher = {Springer New York},
    title = {Personalized Computational Models of the Heart for Cardiac Resynchronization Therapy},
    url-hal = {https://hal.inria.fr/inria-00616112},
    x-international-audience = {yes},
    x-pays = {GB},
    year = {2010} 
    }
    


Conference articles

  1. Barbara André, Tom Vercauteren, Anna M. Buchner, Muhammad Waseem Shahid, Michael B. Wallace, and Nicholas Ayache. An image retrieval approach to setup difficulty levels in training systems for endomicroscopy diagnosis. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), number 6362 of Lecture Notes in Computer Science, Beijing, China, pages 480-487, September 2010. Springer.
    @inproceedings{Andre:MICCAI:10,
    address = {Beijing, China},
    author = {Barbara Andr\'e and Tom Vercauteren and Anna M. Buchner and Muhammad Waseem Shahid and Michael B. Wallace and Nicholas Ayache},
    booktitle = {Medical Image Computing and Computer-Assisted Intervention (MICCAI'10)},
    month = {September},
    number = {6362},
    pages = {480--487},
    publisher = {Springer},
    series = {Lecture Notes in Computer Science},
    title = {An image retrieval approach to setup difficulty levels in training systems for endomicroscopy diagnosis},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Barbara.Andre/Barbara_ANDRE_MICCAI10.pdf},
    url-hal = {https://hal.inria.fr/inria-00616153},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {US},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  2. Barbara André, Tom Vercauteren, Michael B. Wallace, Anna M. Buchner, and Nicholas Ayache. Endomicroscopic video retrieval using mosaicing and visual words. In Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), pages 1419-1422, 2010. IEEE.
    @inproceedings{Andre:ISBI:10,
    author = {Barbara Andr\'e and Tom Vercauteren and Michael B. Wallace and Anna M. Buchner and Nicholas Ayache},
    booktitle = {Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10)},
    doi = {10.1109/ISBI.2010.5490265},
    pages = {1419--1422},
    publisher = {IEEE},
    title = {Endomicroscopic video retrieval using mosaicing and visual words},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Barbara.Andre/ANDRE_ISBI_10.pdf},
    url-hal = {https://hal.inria.fr/inria-00616164},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {US},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  3. S. Bauer, Christof Seiler, T. Bardyn, P. Büchler, and Mauricio Reyes. Atlas-Based Segmentation of Brain Tumor Images Using a Markov Random Field-Based Tumor Growth Model and Non-Rigid Registration. In EMBC, September 2010.
    @inproceedings{BauerSeiler:EMBC:10,
    author = {S. Bauer and Christof Seiler and T. Bardyn and P. B\"uchler and Mauricio Reyes},
    booktitle = {EMBC},
    month = {September},
    title = {Atlas-Based Segmentation of Brain Tumor Images Using a Markov Random Field-Based Tumor Growth Model and Non-Rigid Registration},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  4. S. Bonaretti, M. Kistler, C. Seiler, M. Reyes, and P. Büchler. Combined Statistical Model of Bone Shape and Mechanical Properties for Bone and Implant Modeling. In CMBBE, February 2010.
    @inproceedings{BonarettiSeiler:CMBBE:10,
    author = {S. Bonaretti and M. Kistler and C. Seiler and M. Reyes and P. B\"uchler},
    booktitle = {CMBBE},
    month = {February},
    title = {Combined Statistical Model of Bone Shape and Mechanical Properties for Bone and Implant Modeling},
    url-hal = {https://hal.inria.fr/hal-00847603},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  5. Caroline Brun, Natasha Leporé, Y.-Y. Chou, Xavier Pennec, Greig de Zubicaray, K.L. McMahon, M.J. Wright, James C. Gee, and Paul M. Thompson. A 3D Statistical Fluid Registration Algorithm. In Workshop on Machine Learning in Medical Imaging (MLMI'2010), Beijing, September 2010.
    @inproceedings{Brun:MLMI:2010,
    address = {Beijing},
    author = {Caroline Brun and Natasha Lepor\'e and Y.-Y. Chou and Xavier Pennec and de Zubicaray, Greig and K.L. McMahon and M.J. Wright and James C. Gee and Paul M. Thompson},
    booktitle = {Workshop on Machine Learning in Medical Imaging (MLMI'2010)},
    month = {September},
    title = {A 3D Statistical Fluid Registration Algorithm},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Xavier.Pennec/Brun_Safira_MLMI2010.pdf},
    url-hal = {https://hal.inria.fr/inria-00616169},
    x-international-audience = {yes},
    x-pays = {US},
    x-proceedings = {no},
    year = {2010} 
    }
    


  6. Caroline Brun, Natasha Leporé, Xavier Pennec, Y.-Y. Chou, A.D. Lee, M. Barysheva, Greig de Zubicaray, K.L. McMahon, M.J. Wright, and Paul M. Thompson. Statistically assisted fluid image registration algorithm - SAFIRA. In Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), pages 364-367, 2010. IEEE.
    @inproceedings{Brun:ISBI:10,
    author = {Caroline Brun and Natasha Lepor\'e and Xavier Pennec and Y.-Y. Chou and A.D. Lee and M. Barysheva and de Zubicaray, Greig and K.L. McMahon and M.J. Wright and Paul M. Thompson},
    booktitle = {Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10)},
    doi = {10.1109/ISBI.2010.5490335},
    pages = {364--367},
    publisher = {IEEE},
    title = {Statistically assisted fluid image registration algorithm - SAFIRA},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Xavier.Pennec/Brun.ISBI2010.pdf},
    url-hal = {https://hal.inria.fr/inria-00616165},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {US},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  7. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, and José Braga. Comparison of the endocast growth of chimpanzees and bonobos via temporal regression and spatiotemporal registration. In Miccai Workshop on Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data, Beijing, China, September 2010.
    @inproceedings{Durrleman:STIA:2010,
    address = {Beijing, China},
    author = {Stanley Durrleman and Xavier Pennec and Alain Trouv\'e and Nicholas Ayache and Jos\'e Braga},
    booktitle = {Miccai Workshop on Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data},
    month = {September},
    title = {Comparison of the endocast growth of chimpanzees and bonobos via temporal regression and spatiotemporal registration},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Stanley.Durrleman/Durrleman_STIA10.pdf},
    url-hal = {https://hal.inria.fr/inria-00616154},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  8. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, and José Braga. Measuring the inter-species variability of endocast growth using shape regression and spatiotemporal registration. In Abstracts of the 79-th annual meeting of the American Assoc. of Physical Anthropologists (AAPA), April 2010, Albuquerque, pages 78-79, 2010.
    @inproceedings{Durrleman:AAPA:10,
    author = {Stanley Durrleman and Xavier Pennec and Alain Trouv\'e and Nicholas Ayache and Jos\'e Braga},
    booktitle = {Abstracts of the 79-th annual meeting of the American Assoc. of Physical Anthropologists (AAPA), April 2010, Albuquerque},
    pages = {78-79},
    title = {Measuring the inter-species variability of endocast growth using shape regression and spatiotemporal registration},
    url-hal = {https://hal.inria.fr/hal-00875361},
    url-publisher = {http://physanth.org/annual-meeting/2010/79th-annual-meeting-2010/2010 AAPA Abstracts.pdf},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {no},
    year = {2010} 
    }
    


  9. Vincent Garcia, Olivier Commowick, and Grégoire Malandain. A Robust and Efficient Block Matching Framework for Non Linear Registration of Thoracic CT Images. In Grand Challenges in Medical Image Analysis (MICCAI workshop), Beijing, China, September 2010.
    @inproceedings{Garcia:2010:EMPIRE10:2,
    address = {Beijing, China},
    author = {Vincent Garcia and Olivier Commowick and Gr\'egoire Malandain},
    booktitle = {Grand Challenges in Medical Image Analysis (MICCAI workshop)},
    hal-identifiant = {inria-00616148},
    month = {September},
    title = {A Robust and Efficient Block Matching Framework for Non Linear Registration of Thoracic CT Images},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Vincent.Garcia/Garcia_2010_EMPIRE10_2.pdf},
    url-hal = {https://hal.inria.fr/inria-00616148},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  10. Vincent Garcia, Tom Vercauteren, Grégoire Malandain, and Nicholas Ayache. Diffeomorphic demons and the EMPIRE10 challenge. In Grand Challenges in Medical Image Analysis (MICCAI workshop), Beijing, China, September 2010.
    @inproceedings{Garcia:2010:EMPIRE10:1,
    address = {Beijing, China},
    author = {Vincent Garcia and Tom Vercauteren and Gr\'egoire Malandain and Nicholas Ayache},
    booktitle = {Grand Challenges in Medical Image Analysis (MICCAI workshop)},
    hal-identifiant = {inria-00616149},
    month = {September},
    title = {Diffeomorphic demons and the EMPIRE10 challenge},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Vincent.Garcia/Garcia_2010_EMPIRE10_1.pdf},
    url-hal = {https://hal.inria.fr/inria-00616149},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  11. Ezequiel Geremia, Bjoern H. Menze, Olivier Clatz, Ender Konukoglu, Antonio Criminisi, and Nicholas Ayache. Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), LNCS, Beijing, China, September 2010. Springer.
    @inproceedings{Geremia:MICCAI:10,
    address = {Beijing, China},
    author = {Ezequiel Geremia and Bjoern H. Menze and Olivier Clatz and Ender Konukoglu and Antonio Criminisi and Nicholas Ayache},
    booktitle = {Medical Image Computing and Computer-Assisted Intervention (MICCAI'10)},
    month = {September},
    publisher = {Springer},
    series = {LNCS},
    title = {Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Ezequiel.Geremia/miccai2010.pdf},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {GB,US},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  12. V. Gorbunova, Stanley Durrleman, Pechin Lo, Xavier Pennec, and M. de Bruijne. Lung CT registration combining intensity, curves and surfaces. In Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), pages 340-343, 2010. IEEE.
    @inproceedings{Gorbunova:ISBI:10,
    author = {V. Gorbunova and Stanley Durrleman and Pechin Lo and Xavier Pennec and de Bruijne, M.},
    booktitle = {Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10)},
    doi = {10.1109/ISBI.2010.5490341},
    pages = {340--343},
    publisher = {IEEE},
    title = {Lung CT registration combining intensity, curves and surfaces},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Xavier.Pennec/Gorbunova.ISBI2010.pdf},
    url-hal = {https://hal.inria.fr/inria-00616166},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {DK},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  13. Frederik O. Kaster, Bjoern H. Menze, Marc-André Weber, and Fred A. Hamprecht. A survey on learning tumor classifier from noisy annotations by probabilistic graphical models. In MICCAI Workshop on Medical Computer Vision (MICCAI-MCV'10), Beijing, China, September 2010.
    @inproceedings{Kaster:MICCAI-MCV:2010,
    address = {Beijing, China},
    author = {Frederik O. Kaster and Bjoern H. Menze and Marc-Andr\'e Weber and Fred A. Hamprecht},
    booktitle = {MICCAI Workshop on Medical Computer Vision (MICCAI-MCV'10)},
    month = {September},
    title = {A survey on learning tumor classifier from noisy annotations by probabilistic graphical models},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {US,DE},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  14. Hans Lamecker and Xavier Pennec. Atlas to Image-with-Tumor Registration based on Demons and Deformation Inpainting. In Proc. MICCAI Workshop on Computational Imaging Biomarkers for Tumors - From Qualitative to Quantitative (CIBT'2010), Beijing, September 2010.
    @inproceedings{Lamecker:CIBT:2010,
    address = {Beijing},
    author = {Hans Lamecker and Xavier Pennec},
    booktitle = {Proc. MICCAI Workshop on Computational Imaging Biomarkers for Tumors - From Qualitative to Quantitative (CIBT'2010)},
    month = {September},
    title = {Atlas to Image-with-Tumor Registration based on Demons and Deformation Inpainting},
    url = {http://hdl.handle.net/10380/3208},
    url-hal = {https://hal.inria.fr/inria-00616156},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  15. N. Lepore, AA Joshi, RM. Leahy, CC Brun, YY Chou, X. Pennec, AD Lee, M. Barysheva, GI de Zubicaray, MJ. Wright, KL. McMahon, and AW Toga. New Combined Surface and Volume Registration. In Proc. of SPIE 2010, volume 7623, pages 76231E-76231E-9, 2010.
    @inproceedings{Lepore:SPIE:2010,
    author = {Lepore, N. and Joshi, AA and Leahy, RM. and Brun, CC and Chou, YY and Pennec, X. and Lee, AD and Barysheva, M. and de Zubicaray, GI and Wright, MJ. and McMahon, KL. and Toga, AW},
    booktitle = {Proc. of SPIE 2010},
    pages = {76231E-76231E-9},
    title = {New Combined Surface and Volume Registration},
    url-hal = {https://hal.inria.fr/hal-00813772},
    volume = {7623},
    year = {2010} 
    }
    


  16. Marco Lorenzi, Nicholas Ayache, G. Frisoni, and Xavier Pennec. 4D registration of serial brain MR's images: a robust measure of changes applied to Alzheimer's disease. In Miccai Workshop on Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data, Beijing, China, September 2010. Note: Best Oral Presentation award.
    @inproceedings{Lorenzi:2010:STIA10,
    address = {Beijing, China},
    author = {Marco Lorenzi and Nicholas Ayache and G. Frisoni and Xavier Pennec},
    booktitle = {Miccai Workshop on Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data},
    month = {September},
    note = {Best Oral Presentation award},
    title = {4D registration of serial brain MR's images: a robust measure of changes applied to Alzheimer's disease},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Marco.Lorenzi/4D-registration-Lorenzi.pdf},
    x-international-audience = {yes},
    x-pays = {IT},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  17. Tommaso Mansi, Xavier Pennec, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. LogDemons Revisited: Consistent Regularisation and Incompressibility Constraint for Soft Tissue Tracking in Medical Images. In Proc. of Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), part II, volume 6362 of LNCS, Beijing, China, pages 652-659, September 2010.
    @inproceedings{Mansi:MICCAI:10,
    address = {Beijing, China},
    author = {Tommaso Mansi and Xavier Pennec and Maxime Sermesant and Herv\'e Delingette and Nicholas Ayache},
    booktitle = {Proc. of Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), part II},
    doi = {10.1007/978-3-642-15745-5_80},
    month = {September},
    pages = {652--659},
    pmid = {20879371},
    series = {LNCS},
    title = {LogDemons Revisited: Consistent Regularisation and Incompressibility Constraint for Soft Tissue Tracking in Medical Images},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Tommaso.Mansi/mansi10MICCAI.pdf},
    url-hal = {https://hal.inria.fr/inria-00616162},
    volume = {6362},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  18. Tommaso Mansi, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Nicholas Ayache, and Younes Boudjemline. Modèles numériques pour la simulation et la prédiction de la fonction cardiaque. In Congrès de la Société Francaise de Pédiatrie et de l'Association des Pédiatres de Langue Française (APLF), 2010. Note: Archives de Pédiatrie 17(6):611-2, PMID: 20654804.
    @inproceedings{mansi:sfp:2010,
    author = {Tommaso Mansi and Maxime Sermesant and Herv\'e Delingette and Xavier Pennec and Nicholas Ayache and Younes Boudjemline},
    booktitle = {Congr\`es de la Soci\'et\'e Francaise de P\'ediatrie et de l'Association des P\'ediatres de Langue Fran\c{c}aise (APLF)},
    note = {Archives de P\'ediatrie 17(6):611-2, PMID: 20654804},
    title = {Mod\`eles num\'eriques pour la simulation et la pr\'ediction de la fonction cardiaque},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Tommaso.Mansi/mansi10SFP.pdf},
    x-editorial-board = {yes},
    x-international-audience = {no},
    x-invited-conference = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  19. Stéphanie Marchesseau, T. Heimann, Simon Chatelin, Rémy Willinger, and Hervé Delingette. Multiplicative Jacobian Energy Decomposition Method for Fast Porous Visco-Hyperelastic Soft Tissue Model. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'10), LNCS, Beijing, China, September 2010. Springer.
    @inproceedings{Marchesseau:MICCAI:2010,
    address = {Beijing, China},
    author = {St\'ephanie Marchesseau and T. Heimann and Simon Chatelin and R\'emy Willinger and Herv\'e Delingette},
    booktitle = {Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'10)},
    hal-identifiant = {hal-00593207},
    month = {September},
    publisher = {Springer},
    series = {LNCS},
    title = {Multiplicative Jacobian Energy Decomposition Method for Fast Porous Visco-Hyperelastic Soft Tissue Model},
    url = {http://www-sop.inria.fr/members/Herve.Delingette/Publications/MICCAI-Marchesseau-2010.pdf},
    url-hal = {http://hal.inria.fr/hal-00593207/en/},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  20. Kristin McLeod, Alfonso Caiazzo, Miguel A. Fernández, Tommaso Mansi, Irene E. Vignon-Clementel, Maxime Sermesant, Xavier Pennec, Younes Boudjemline, and Jean-Frederic Gerbeau. Atlas-Based Reduced Models of Blood Flows for Fast Patient-Specific Simulations. In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function + a Cardiac Electrophysiological Simulation Challenge (STACOM+CESC'10), volume 6364 of LNCS, Beijing, pages 95-104, September 2010. Springer.
    @inproceedings{McLeod:STACOM:2010,
    address = {Beijing},
    author = {Kristin McLeod and Alfonso Caiazzo and Miguel A. Fern\'andez and Tommaso Mansi and Irene E. Vignon-Clementel and Maxime Sermesant and Xavier Pennec and Younes Boudjemline and Jean-Frederic Gerbeau},
    booktitle = {Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function + a Cardiac Electrophysiological Simulation Challenge (STACOM+CESC'10)},
    doi = {10.1007/978-3-642-15835-3_10},
    hal-identifiant = {inria-00517994},
    month = {September},
    pages = {95--104},
    publisher = {Springer},
    series = {LNCS},
    title = {Atlas-Based Reduced Models of Blood Flows for Fast Patient-Specific Simulations},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Kristin.McLeod/mcleod10MICCAI.pdf},
    url-hal = {https://hal.inria.fr/inria-00517994},
    volume = {6364},
    x-international-audience = {yes},
    x-pays = {ES},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  21. Bjoern H. Menze, Koen Van Leemput, Danial Lashkari, Marc-André Weber, Nicholas Ayache, and Polina Golland. A generative model for brain tumor segmentation in multi-modal images. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), LNCS, Beijing, China, September 2010. Springer.
    @inproceedings{Menze:MICCAI:2010,
    address = {Beijing, China},
    author = {Bjoern H. Menze and Van Leemput, Koen and Danial Lashkari and Marc-Andr\'e Weber and Nicholas Ayache and Polina Golland},
    booktitle = {Medical Image Computing and Computer-Assisted Intervention (MICCAI'10)},
    month = {September},
    publisher = {Springer},
    series = {LNCS},
    title = {A generative model for brain tumor segmentation in multi-modal images},
    url = {http://people.csail.mit.edu/menze/papers/menze_10_generative.pdf},
    url-hal = {https://hal.inria.fr/hal-00813776},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {US,DE},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  22. Franck Michel, Alban Gaignard, Farooq Ahmad, Christian Barillot, Benedicte Batrancourt, Michel Dojat, Bernard Gibaud, Pascal Girard, David Godard, Gilles Kassel, Diane Lingrand, Grégoire Malandain, Johan Montagnat, Mélanie Pelegrini-Issac, Xavier Pennec, Javier Rojas Balderrama, and Bacem Wali. Grid-wide neuroimaging data federation in the context of the NeuroLOG project. In Proc. of HealthGrid Conference, volume 159 of Studies in Health Technology and Informatics, pages 112-123, 2010.
    @inproceedings{Michel:HG:10,
    author = {Franck Michel and Alban Gaignard and Farooq Ahmad and Christian Barillot and Benedicte Batrancourt and Michel Dojat and Bernard Gibaud and Pascal Girard and David Godard and Gilles Kassel and Diane Lingrand and Gr\'egoire Malandain and Johan Montagnat and M\'elanie Pelegrini-Issac and Xavier Pennec and Rojas Balderrama, Javier and Bacem Wali},
    booktitle = {Proc. of HealthGrid Conference},
    doi = {10.3233/978-1-60750-583-9-112},
    hal-identifiant = {inserm-00512799},
    pages = {112--123},
    pmid = {20543431},
    series = {Studies in Health Technology and Informatics},
    title = {Grid-wide neuroimaging data federation in the context of the NeuroLOG project},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Xavier.Pennec/Michel_healthgrid10.pdf},
    url-hal = {http://www.hal.inserm.fr/inserm-00512799},
    volume = {159},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  23. Erik Pernod, Maxime Sermesant, Jatin Relan, and Hervé Delingette. Interactive real time simulation of cardiac radio-frequency ablation. In Proc. of Eurographics Workshop on Visual Computing for Biology and Medicine (2010) (VCBM'2010), Leipzig, August 2010. Note: Best Paper Award.
    @inproceedings{Pernod:VCBM:2010,
    address = {Leipzig},
    author = {Erik Pernod and Maxime Sermesant and Jatin Relan and Herv\'e Delingette},
    booktitle = {Proc. of Eurographics Workshop on Visual Computing for Biology and Medicine (2010) (VCBM'2010)},
    month = {August},
    note = {Best Paper Award},
    title = {Interactive real time simulation of cardiac radio-frequency ablation},
    url = {http://www-sop.inria.fr/members/Herve.Delingette/Publications/ErikPernodVCBM2010.pdf},
    url-hal = {https://hal.inria.fr/inria-00616160},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  24. Adityo Prakosa, Maxime Sermesant, Hervé Delingette, Eric Saloux, Pascal Allain, Pascal Cathier, Patrick Etyngier, Nicolas Villain, and Nicholas Ayache. Non-Invasive Activation Times Estimation using 3D Echocardiography. In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function + a Cardiac Electrophysiological Simulation Challenge (STACOM+CESC'10), volume 6364 of LNCS, Beijing, September 2010. Springer.
    @inproceedings{prakosa:stacom:2010,
    address = {Beijing},
    author = {Adityo Prakosa and Maxime Sermesant and Herv\'e Delingette and Eric Saloux and Pascal Allain and Pascal Cathier and Patrick Etyngier and Nicolas Villain and Nicholas Ayache},
    booktitle = {Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function + a Cardiac Electrophysiological Simulation Challenge (STACOM+CESC'10)},
    month = {September},
    publisher = {Springer},
    series = {LNCS},
    title = {Non-Invasive Activation Times Estimation using 3D Echocardiography},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Adityo.Prakosa/PrakosaSTACOM10MICCAI.pdf},
    url-hal = {https://hal.inria.fr/inria-00616157},
    volume = {6364},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  25. Liliane Ramus, Olivier Commowick, and Grégoire Malandain. Construction of Patient Specific Atlases from Locally Most Similar Anatomical Pieces. In Tianzi Jiang, Nassir Navab, Josien P.W. Pluim, and Max A. Viergever, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), volume 6363 of Lecture Notes in Computer Science, Beijing, China, pages 155-162, September 2010. Springer.
    @inproceedings{Ramus:MICCAI:10,
    address = {Beijing, China},
    author = {Liliane Ramus and Olivier Commowick and Gr\'egoire Malandain},
    booktitle = {Medical Image Computing and Computer-Assisted Intervention (MICCAI'10)},
    editor = {Tianzi Jiang and Nassir Navab and Josien P.W. Pluim and Max A. Viergever},
    hal-identifiant = {inserm-00550024},
    month = {September},
    pages = {155--162},
    publisher = {Springer},
    series = {Lecture Notes in Computer Science},
    title = {Construction of Patient Specific Atlases from Locally Most Similar Anatomical Pieces},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Liliane.Ramus/miccai10_lramus.pdf},
    url-hal = {http://hal.inria.fr/inserm-00550024/en/},
    volume = {6363},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  26. Liliane Ramus and Grégoire Malandain. Assessing Selection Methods in the Context of Multi-atlas Based Segmentation. In Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), Rotterdam, The Netherlands, April 2010. IEEE.
    @inproceedings{Ramus:ISBI:10,
    address = {Rotterdam, The Netherlands},
    author = {Liliane Ramus and Gr\'egoire Malandain},
    booktitle = {Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10)},
    hal-identifiant = {inria-00616167},
    month = {April},
    publisher = {IEEE},
    title = {Assessing Selection Methods in the Context of Multi-atlas Based Segmentation},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Liliane.Ramus/isbi10_lramus.pdf},
    url-hal = {https://hal.inria.fr/inria-00616167},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  27. Liliane Ramus and Grégoire Malandain. Multi-atlas based segmentation: Application to the head and neck region for radiotherapy planning. In MICCAI Workshop Medical Image Analysis for the Clinic - A Grand Challenge, Beijing, China, September 2010.
    @inproceedings{Ramus_miccaichallenge_2010,
    address = {Beijing, China},
    author = {Liliane Ramus and Gr\'egoire Malandain},
    booktitle = {MICCAI Workshop Medical Image Analysis for the Clinic - A Grand Challenge},
    hal-identifiant = {inria-00616150},
    month = {September},
    title = {Multi-atlas based segmentation: Application to the head and neck region for radiotherapy planning},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Liliane.Ramus/miccai10_segmentationchallenge_lramus.pdf},
    url-hal = {https://hal.inria.fr/inria-00616150},
    x-international-audience = {yes},
    x-proceedings = {no},
    year = {2010} 
    }
    


  28. Jatin Relan, Phani Chinchapatnam, Maxime Sermesant, Kawal Rhode, Hervé Delingette, Reza Razavi, and Nicholas Ayache. Coupled Personalisation of Electrophysiology Models for Simulation of Induced Ischemic Ventricular Tachycardia. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'10), LNCS, Beijing, China, September 2010.
    @inproceedings{Relan:MICCAI:10,
    address = {Beijing, China},
    author = {Jatin Relan and Phani Chinchapatnam and Maxime Sermesant and Kawal Rhode and Herv\'e Delingette and Reza Razavi and Nicholas Ayache},
    booktitle = {Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'10)},
    month = {September},
    series = {LNCS},
    title = {Coupled Personalisation of Electrophysiology Models for Simulation of Induced Ischemic Ventricular Tachycardia},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Jatin.Relan/relan_MICCAI_2010.pdf},
    url-hal = {https://hal.inria.fr/inria-00616158},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {GB},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  29. Jatin Relan, M. Pop, Hervé Delingette, G.A. Wright, Nicholas Ayache, and Maxime Sermesant. Personalisation of a 3D Cardiac Electrophysiology Model for Ventricular Myocardium using Optical Mapping and MRI. In MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM) and a Cardiac Electrophysiological Simulation Challenge (CESC'10), volume 6364 of LNCS, 2010. Springer.
    @inproceedings{Relan:STACOM:10,
    author = {Jatin Relan and M. Pop and Herv\'e Delingette and G.A. Wright and Nicholas Ayache and Maxime Sermesant},
    booktitle = {MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM) and a Cardiac Electrophysiological Simulation Challenge (CESC'10)},
    publisher = {Springer},
    series = {LNCS},
    title = {Personalisation of a 3D Cardiac Electrophysiology Model for Ventricular Myocardium using Optical Mapping and MRI},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Jatin.Relan/relan_STACOM_MICCAI_2010.pdf},
    volume = {6364},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {CA},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  30. Aldo C. Rinaldi, P.D. Lambiase, Maxime Sermesant, Phani Chinchapatnam, S. Rhode, Kawal, Simon B. Duckett, Anoop Shetty, Radomir Chabiniok, Tommaso Mansi, Florence Billet, Jean-Marc Peyrat, Hervé Delingette, Philippe Moireau, Michel Sorine, Dominique Chapelle, Nicholas Ayache, Matthew Ginks, and Reza Razavi. Biophysical Modelling To Predict Acute Hemodynamic Response To Cardiac Resynchronization Therapy In Human. In Heart Rhythm 2010 : 31st Annual Scientific Sessions, Denver, États-Unis, 2010.
    @inproceedings{rinaldi:hal-00793657,
    address = {Denver, {\'E}tats-Unis},
    affiliation = {ASCLEPIOS - INRIA Sophia Antipolis , SISYPHE (SIgnals and SYstems in PHysiology and Engineering) - INRIA Rocquencourt , MACS - INRIA Rocquencourt},
    author = {Rinaldi, Aldo C. and Lambiase, P.D. and Sermesant, Maxime and Chinchapatnam, Phani and Rhode, Kawal, S. and Duckett, Simon B. and Shetty, Anoop and Chabiniok, Radomir and Mansi, Tommaso and Billet, Florence and Peyrat, Jean-Marc and Delingette, Herv{\'e} and Moireau, Philippe and Sorine, Michel and Chapelle, Dominique and Ayache, Nicholas and Ginks, Matthew and Razavi, Reza},
    booktitle = {{Heart Rhythm 2010 : 31st Annual Scientific Sessions}},
    language = {Anglais},
    title = {{Biophysical Modelling To Predict Acute Hemodynamic Response To Cardiac Resynchronization Therapy In Human}},
    url-hal = {http://hal.inria.fr/hal-00793657},
    year = {2010} 
    }
    


  31. Christof Seiler, Xavier Pennec, and Mauricio Reyes. Parametric regression of 3D medical images through the exploration of non-parametric regression models. In Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), pages 452-455, 2010. IEEE.
    @inproceedings{Seiler:ISBI:10,
    author = {Christof Seiler and Xavier Pennec and Mauricio Reyes},
    booktitle = {Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10)},
    doi = {10.1109/ISBI.2010.5490313},
    pages = {452--455},
    publisher = {IEEE},
    title = {Parametric regression of 3D medical images through the exploration of non-parametric regression models},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Xavier.Pennec/Seiler.ISBI2010.pdf},
    url-hal = {https://hal.inria.fr/inria-00616168},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {CH},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  32. Andrew Sweet and Xavier Pennec. A Log-Euclidean Statistical Analysis of DTI Brain Deformations. In Proc. of MICCAI Workshop on Computational Diffusion MRI 2010, Beijing, China, September 2010. Keyword(s): diffusion tensor imaging, computational anatomy, diffeomorphic registration, exponential map.
    @inproceedings{Sweet:CDMRI:2010,
    address = {Beijing, China},
    author = {Andrew Sweet and Xavier Pennec},
    booktitle = {Proc. of MICCAI Workshop on Computational Diffusion MRI 2010},
    keywords = {diffusion tensor imaging, computational anatomy, diffeomorphic registration, exponential map},
    month = {September},
    title = {A Log-{Euclidean} Statistical Analysis of DTI Brain Deformations},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Andrew.Sweet/cdmri2010.pdf},
    url-hal = {https://hal.inria.fr/hal-01525407},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  33. Andrew Sweet and Xavier Pennec. Log-Domain Diffeomorphic Registration of Diffusion Tensor Images. In Proc. of Workshop on Biomedical Image Registration 2010, volume 6204 of LNCS, Lübeck, Germany, pages 198-209, July 2010. Springer. Keyword(s): diffusion tensor imaging, computational anatomy, diffeomorphic registration, exponential map.
    @inproceedings{Sweet:WBIR:2010,
    address = {L\"ubeck, Germany},
    author = {Andrew Sweet and Xavier Pennec},
    booktitle = {Proc. of Workshop on Biomedical Image Registration 2010},
    doi = {10.1007/978-3-642-14366-3_18},
    keywords = {diffusion tensor imaging, computational anatomy, diffeomorphic registration, exponential map},
    month = {July},
    pages = {198-209},
    publisher = {Springer},
    series = {LNCS},
    title = {Log-Domain Diffeomorphic Registration of Diffusion Tensor Images},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Andrew.Sweet/wbir2010.pdf},
    url-hal = {https://hal.inria.fr/inria-00616163},
    volume = {6204},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  34. Nicolas Toussaint, Christian T. Stoeck, Sebastian Kozerke, Maxime Sermesant, and Philip G. Batchelor. In-vivo Human 3D Cardiac Fibre Architecture: Reconstruction Using Curvilinear Interpolation of Diffusion Tensor Images. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'10), LNCS, Beijing, China, September 2010. Springer.
    @inproceedings{Toussaint:MICCAI:10,
    address = {Beijing, China},
    author = {Nicolas Toussaint and Christian T. Stoeck and Sebastian Kozerke and Maxime Sermesant and Philip G. Batchelor},
    booktitle = {Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'10)},
    month = {September},
    publisher = {Springer},
    series = {LNCS},
    title = {In-vivo Human 3D Cardiac Fibre Architecture: Reconstruction Using Curvilinear Interpolation of Diffusion Tensor Images},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Nicolas.Toussaint/Toussaint.MICCAI.10.pdf},
    url-hal = {https://hal.inria.fr/inria-00616159},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {GB},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  35. Nicolas Toussaint, Christian T. Stoeck, Maxime Sermesant, Sebastian Kozerke, and Philip G. Batchelor. Three-dimensional Prolate Spheroidal Extrapolation for Sparse DTI of the In-vivo Heart. In Book of Abstracts, International Society in Magnetic Resonance in Medicine (ISMRM'10), Stockholm, 2-7 June 2010.
    @inproceedings{Toussaint:ISMRM:10,
    address = {Stockholm},
    author = {Nicolas Toussaint and Christian T. Stoeck and Maxime Sermesant and Sebastian Kozerke and Philip G. Batchelor},
    booktitle = {Book of Abstracts, International Society in Magnetic Resonance in Medicine (ISMRM'10)},
    month = {2-7 June},
    title = {Three-dimensional Prolate Spheroidal Extrapolation for Sparse DTI of the In-vivo Heart},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Nicolas.Toussaint/Toussaint.ISMRM.10.pdf},
    url-hal = {https://hal.inria.fr/inria-00616146},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {GB},
    x-proceedings = {no},
    year = {2010} 
    }
    


  36. Ken C. L. Wong, Florence Billet, Tommaso Mansi, R. Chabiniok, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. Cardiac motion estimation using a proactive deformable model: evaluation and sensitivity analysis. In MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM) and a Cardiac Electrophysiological Simulation Challenge (CESC'10), volume 6364 of LNCS, pages 154-163, 2010. Springer.
    @inproceedings{Ken:STACOM:2010,
    author = {Ken C. L. Wong and Florence Billet and Tommaso Mansi and R. Chabiniok and Maxime Sermesant and Herv\'e Delingette and Nicholas Ayache},
    booktitle = {MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM) and a Cardiac Electrophysiological Simulation Challenge (CESC'10)},
    pages = {154-163},
    publisher = {Springer},
    series = {LNCS},
    title = {Cardiac motion estimation using a proactive deformable model: evaluation and sensitivity analysis},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Chun-Lok.Wong/KenSTACOM2010.pdf},
    url-hal = {https://hal.inria.fr/inria-00616152},
    volume = {6364},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {yes},
    year = {2010} 
    }
    


Internal reports

  1. M. W. Krueger, J. Relan, H. Delingette, M. Sermesant, N. Ayache, G. Seemann, and O. Dössel. Computational Models for AF and VT simulation. Deliverables D6.2.1, European project euHeart, May 2010.
    @techreport{euHeart:WP06:10,
    author = {M. W. Krueger and J. Relan and H. Delingette and M. Sermesant and N. Ayache and G. Seemann and O. D\"ossel},
    institution = {European project euHeart},
    month = {May},
    title = {Computational Models for AF and VT simulation},
    type = {Deliverables D6.2.1},
    url-hal = {https://hal.inria.fr/hal-00813771},
    year = {2010} 
    }
    


  2. Xavier Pennec, Curzio Basso, Younes Boudjemline, Stanley Durrleman, Ender Konukoglu, Tommaso Mansi, Kristin McLeod, Giacomo Pongiglione, Matteo Santoro, Maxime Sermesant, Bertrand Stos, Nicolas Toussaint, and Gianluca Trocchio. Third generation disease models: Image analysis tools, pediatric heart diseases, inflammatory diseases and brain tumors. Deliverables D11.4, European project Health-e-Child (IST-2004-027749), April 2010.
    @techreport{Health-e-Child:WP11:10,
    author = {Xavier Pennec and Curzio Basso and Younes Boudjemline and Stanley Durrleman and Ender Konukoglu and Tommaso Mansi and Kristin McLeod and Giacomo Pongiglione and Matteo Santoro and Maxime Sermesant and Bertrand Stos and Nicolas Toussaint and Gianluca Trocchio},
    institution = {European project Health-e-Child (IST-2004-027749)},
    month = {April},
    title = {Third generation disease models: Image analysis tools, pediatric heart diseases, inflammatory diseases and brain tumors},
    type = {Deliverables D11.4},
    url = {http://www-sop.inria.fr/asclepios/projects/Health-e-Child/DiseaseModels/},
    url-hal = {https://hal.inria.fr/hal-00813777},
    x-international-audience = {yes},
    x-pays = {IT},
    year = {2010} 
    }
    


Miscellaneous

  1. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. Endomicroscopic Video Retrieval Approach to Support Diagnostic Differentiation Between Neoplastic and Non-Neoplastic Colonic Polyps. Gastroenterology (DDW 2010), May 2010.
    @misc{Andre:DDW:2010,
    author = {Barbara Andr\'e and Tom Vercauteren and Anna M. Buchner and Michael B. Wallace and Nicholas Ayache},
    doi = {10.1016/S0016-5085(10)62375-X},
    howpublished = {Gastroenterology (DDW 2010)},
    month = {May},
    number = {5},
    pages = {S-514},
    title = {Endomicroscopic Video Retrieval Approach to Support Diagnostic Differentiation Between Neoplastic and Non-Neoplastic Colonic Polyps},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Barbara.Andre/Andre_DDW10_published.pdf},
    url-hal = {https://hal.inria.fr/hal-00813762},
    volume = {138},
    x-international-audience = {yes},
    x-pays = {US},
    year = {2010} 
    }
    


  2. Benoît Bleuzé, Olivier Clatz, Pierre Fillard, Maxime Sermesant, Nicolas Toussaint, and Julien Wintz. Horizontal Data Fusion for Integrative Modelling: the MedINRIA Fusion Toolbox. First VPH Conference (VPH2010), Brussels), September 2010. Note: Abstract.
    @misc{Bleuze:VPH:2010,
    author = {Beno\^it Bleuz\'e and Olivier Clatz and Pierre Fillard and Maxime Sermesant and Nicolas Toussaint and Julien Wintz},
    howpublished = {First VPH Conference (VPH2010), Brussels)},
    month = {September},
    note = {Abstract},
    title = {Horizontal Data Fusion for Integrative Modelling: the MedINRIA Fusion Toolbox},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Benoit.Bleuze/Bleuze_VPH10_Poster.pdf},
    url-hal = {https://hal.inria.fr/hal-00813764},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {no},
    year = {2010} 
    }
    


  3. Marine Breuilly, Grégoire Malandain, Nicholas Ayache, Philippe Franken, Jacques Darcourt, and Thierry Pourcher. Definition of motionless phases for monitoring gated reconstruction of SPECT images in alive mice. ICVSS 2010, July 2010.
    @misc{Breuilly:icvss:2010,
    address = {Scicli, Sicilia},
    author = {Marine Breuilly and Gr\'egoire Malandain and Nicholas Ayache and Philippe Franken and Jacques Darcourt and Thierry Pourcher},
    howpublished = {ICVSS 2010},
    month = {July},
    title = {Definition of motionless phases for monitoring gated reconstruction of SPECT images in alive mice},
    url = {http://www-sop.inria.fr/asclepios/Publications/Marine.Breuilly/BreuillyICVSS2010.pdf},
    url-hal = {https://hal.inria.fr/hal-00759962},
    x-international-audience = {yes},
    year = {2010} 
    }
    


  4. Mikael Cohen, Christine Lebrun, Dominique Aufauvre, Stéphane Chanalet, Christelle Filleau, William Camu, Pierre Thomas, Grégoire Malandain, and Pierre Clavelou. Longitudinal MRI assessment of quality of life and disability in early treated relapsing remitting multiple sclerosis. American Academy of Neurology Annual Meeting, April 2010. Keyword(s): multiple sclerosis.
    @misc{cohen:aan:2010,
    author = {Mikael Cohen and Christine Lebrun and Dominique Aufauvre and St\'ephane Chanalet and Christelle Filleau and William Camu and Pierre Thomas and Gr\'egoire Malandain and Pierre Clavelou},
    howpublished = {American Academy of Neurology Annual Meeting},
    keywords = {multiple sclerosis},
    month = {April},
    title = {Longitudinal MRI assessment of quality of life and disability in early treated relapsing remitting multiple sclerosis},
    url-hal = {https://hal.inria.fr/hal-00813768},
    x-international-audience = {yes},
    year = {2010} 
    }
    


  5. I. L. Dryden, Xavier Pennec, and Jean-Marc Peyrat. Power Euclidean metrics for covariance matrices with application to diffusion tensor imaging. ArXiv e-prints, September 2010.
    @misc{Dryden:ArXiv:2010,
    author = {I. L. Dryden and Xavier Pennec and Jean-Marc Peyrat},
    howpublished = {ArXiv e-prints},
    month = {September},
    title = {Power {Euclidean} metrics for covariance matrices with application to diffusion tensor imaging},
    url = {http://arxiv.org/abs/1009.3045},
    url-hal = {https://hal.inria.fr/hal-00813769},
    x-international-audience = {yes},
    x-pays = {US},
    year = {2010} 
    }
    


  6. Marco Lorenzi, Michael Donohue, Donata Paternico, Cristina Scarpazza, Susanne Ostrowitzki, Olivier Blin, Elaine Irving, and G. Frisoni. Enrichment through biomarkers in clinical trials of Alzheimer's drugs in patients with mild cognitive impairment. Clinical Trials on Alzheimer's Disease International Conference, November 2010.
    @misc{Lorenzi:CTAD:10,
    author = {Marco Lorenzi and Michael Donohue and Donata Paternico and Cristina Scarpazza and Susanne Ostrowitzki and Olivier Blin and Elaine Irving and G. Frisoni},
    howpublished = {Clinical Trials on Alzheimer's Disease International Conference},
    month = {November},
    title = {Enrichment through biomarkers in clinical trials of Alzheimer's drugs in patients with mild cognitive impairment},
    url-hal = {https://hal.inria.fr/hal-00813773},
    x-international-audience = {yes},
    year = {2010} 
    }
    


  7. Marco Lorenzi, G. Frisoni, Nicholas Ayache, and Xavier Pennec. Mapping longitudinal changes in the brain affected by Alzheimer's disease. First VPH Conference (VPH2010), Brussels), September 2010.
    @misc{Lorenzi:VPH:2010,
    author = {Marco Lorenzi and G. Frisoni and Nicholas Ayache and Xavier Pennec},
    howpublished = {First VPH Conference (VPH2010), Brussels)},
    month = {September},
    title = {Mapping longitudinal changes in the brain affected by Alzheimer's disease},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Marco.Lorenzi/Lorenzi_VPH10_Poster.pdf},
    url-hal = {https://hal.inria.fr/hal-00813774},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {no},
    year = {2010} 
    }
    


  8. Kristin McLeod, Tommaso Mansi, Stanley Durrleman, Maxime Sermesant, and Xavier Pennec. Statistical Analysis of the Anatomy: From Digital Patient to Digital Population. First VPH Conference (VPH2010), Brussels), September 2010. Note: Abstract.
    @misc{McLeod:VPH:2010,
    author = {Kristin McLeod and Tommaso Mansi and Stanley Durrleman and Maxime Sermesant and Xavier Pennec},
    howpublished = {First VPH Conference (VPH2010), Brussels)},
    month = {September},
    note = {Abstract},
    title = {Statistical Analysis of the Anatomy: From Digital Patient to Digital Population},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Kristin.McLeod/McLeod_VPH10_Poster.pdf},
    url-hal = {https://hal.inria.fr/hal-00813775},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {no},
    year = {2010} 
    }
    


  9. Liliane Ramus, Souha Aouadi, Yoann Pointreau, Guillaume Bera, Yungan Tao, Anne Beaudré, Vincent Grégoire, and Grégoire Malandain. Design and use of patient-specific atlases for radiotherapy planning of the head and neck region. Acts of the 29th European Society for Therapeutic Radiology and Oncology (ESTRO), 2010.
    @misc{Ramus:estro:2010,
    author = {Liliane Ramus and Souha Aouadi and Yoann Pointreau and Guillaume Bera and Yungan Tao and Anne Beaudr\'e and Vincent Gr\'egoire and Gr\'egoire Malandain},
    howpublished = {Acts of the 29th European Society for Therapeutic Radiology and Oncology (ESTRO)},
    pages = {S-513},
    title = {Design and use of patient-specific atlases for radiotherapy planning of the head and neck region},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Liliane.Ramus/estro10_lramus.pdf},
    url-hal = {https://hal.inria.fr/hal-00813778},
    volume = {96},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {BE},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  10. Jatin Relan, Maxime Sermesant, Phani Chinchapatnam, Hervé Delingette, Kawal Rhode, Reza Razavi, and Nicholas Ayache. Personalisation of a 3D Macroscopic Cardiac Electrophysiology Model for Simulation of Induced Ischemic Ventricular Tachycardia. First VPH Conference (VPH2010), Brussels), September 2010.
    @misc{Relan:VPH:2010,
    author = {Jatin Relan and Maxime Sermesant and Phani Chinchapatnam and Herv\'e Delingette and Kawal Rhode and Reza Razavi and Nicholas Ayache},
    howpublished = {First VPH Conference (VPH2010), Brussels)},
    month = {September},
    title = {Personalisation of a 3D Macroscopic Cardiac Electrophysiology Model for Simulation of Induced Ischemic Ventricular Tachycardia},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Jatin.Relan/relan_VPH_abstract_2010.pdf},
    url-hal = {https://hal.inria.fr/hal-00813779},
    x-international-audience = {yes},
    x-pays = {GB},
    year = {2010} 
    }
    


  11. Christof Seiler, A. Gazdhar, T. Geiser, Mauricio Reyes, and B. Gantenbein-Ritter. Mesenchymal Stem Cell Classification During Differentiation Based on Shape Information. TERMIS, Galway, Ireland, June 2010. Note: Abstract.
    @misc{Seiler:TERMIS:2010,
    author = {Christof Seiler and A. Gazdhar and T. Geiser and Mauricio Reyes and B. Gantenbein-Ritter},
    howpublished = {TERMIS, Galway, Ireland},
    month = {June},
    note = {Abstract},
    title = {Mesenchymal Stem Cell Classification During Differentiation Based on Shape Information},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-proceedings = {no},
    year = {2010} 
    }
    


  12. Juliette Thariat, Liliane Ramus, Philippe Maingon, Vincent Grégoire, Vincent Darcourt, Serge Marcie, and Grégoire Malandain. Atlas de contourage automatique des dents pour l'optimisation des soins dentaires. 21e Congrès de la Société Française de Radiothérapie Oncologique (SFRO), 2010.
    @misc{Thariat:sfro:2010,
    author = {Juliette Thariat and Liliane Ramus and Philippe Maingon and Vincent Gr\'egoire and Vincent Darcourt and Serge Marcie and Gr\'egoire Malandain},
    howpublished = {21e Congr\`es de la Soci\'et\'e Fran\c{c}aise de Radioth\'erapie Oncologique (SFRO)},
    title = {Atlas de contourage automatique des dents pour l'optimisation des soins dentaires},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Liliane.Ramus/sfro10_jthariat.pdf},
    url-hal = {https://hal.inria.fr/hal-00813781},
    x-editorial-board = {yes},
    x-international-audience = {no},
    x-pays = {BE},
    x-proceedings = {yes},
    year = {2010} 
    }
    


  13. Juliette Thariat, Liliane Ramus, Philippe Maingon, Vincent Grégoire, Serge Marcie, and Grégoire Malandain. Construction of a dental atlas for automatic teeth segmentation to improve post-irradiation dental care management. 52nd Annual Meeting of the American Society for Therapeutic Radiology and Oncology (ASTRO), 2010.
    @misc{Thariat:astro:2010,
    author = {Juliette Thariat and Liliane Ramus and Philippe Maingon and Vincent Gr\'egoire and Serge Marcie and Gr\'egoire Malandain},
    howpublished = {52nd Annual Meeting of the American Society for Therapeutic Radiology and Oncology (ASTRO)},
    title = {Construction of a dental atlas for automatic teeth segmentation to improve post-irradiation dental care management},
    url = {http://www.inria.fr/sophia/asclepios/Publications/Liliane.Ramus/astro10_jthariat.pdf},
    url-hal = {https://hal.inria.fr/hal-00813782},
    x-editorial-board = {yes},
    x-international-audience = {yes},
    x-pays = {BE},
    x-proceedings = {yes},
    year = {2010} 
    }
    



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