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Publications of year 2013

Books and proceedings

  1. Bjoern H. Menze, Georg Langs, Le Lu, Albert Montillo, Zhuowen Tu, and Antonio Criminisi. Medical Computer Vision: Recognition techniques and applications in medical imaging. Proceedings of the MICCAI 2012 Workshop on Medical Computer Vision (MCV 2012), volume 7766 of Lecture Notes in Computer Science. Springer, February 2013.
    @book{menze:hal-00912655,
    TITLE = {{Medical Computer Vision: Recognition techniques and applications in medical imaging. Proceedings of the MICCAI 2012 Workshop on Medical Computer Vision (MCV 2012)}},
    AUTHOR = {Menze, Bjoern H. and Langs, Georg and Lu, Le and Montillo, Albert and Tu, Zhuowen and Criminisi, Antonio},
    url-hal= {https://hal.inria.fr/hal-00912655},
    PUBLISHER = {{Springer}},
    SERIES = {Lecture Notes in Computer Science},
    VOLUME = {7766},
    PAGES = {294},
    YEAR = {2013},
    MONTH = Feb,
    DOI = {10.1007/978-3-642-36620-8},
    HAL_ID = {hal-00912655},
    HAL_VERSION = {v1},
    
    }
    


  2. Bjoern Menze, Mauricio Reyes, Andras Jakab, Elisabeth Gerstner, Justin Kirby, and Keyvan Farahani, editors. Proceedings of the MICCAI Challenge on Multimodal Brain Tumor Image Segmentation (BRATS) 2013, Nagoya, Japan, September 2013. MICCAI.
    @proceedings{menze:hal-00912934,
    TITLE = {{Proceedings of the MICCAI Challenge on Multimodal Brain Tumor Image Segmentation (BRATS) 2013}},
    AUTHOR = {Menze, Bjoern and Reyes, Mauricio and Jakab, Andras and Gerstner, Elisabeth and Kirby, Justin and Farahani, Keyvan},
    url-hal= {https://hal.inria.fr/hal-00912934},
    BOOKTITLE = {{MICCAI Challenge on Multimodal Brain Tumor Image Segmentation (BRATS)}},
    ADDRESS = {Nagoya, Japan},
    EDITOR = {Bjoern Menze and Mauricio Reyes and Andras Jakab and Elisabeth Gerstner and Justin Kirby and Keyvan Farahani},
    PUBLISHER = {{MICCAI}},
    PAGES = {57},
    YEAR = {2013},
    MONTH = Sep,
    PDF = {https://hal.inria.fr/hal-00912934/file/proc_brats_2013.pdf},
    HAL_ID = {hal-00912934},
    HAL_VERSION = {v1},
    
    }
    


  3. Pennec, Xavier, Joshi, Sarang, Nielsen, Mads, Fletcher, Tom P., Durrleman, Stanley, Sommer, and Stefan, editors. Proceedings of the Fourth International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Biological Shape Variability Modeling (MFCA 2013), Nagoya, Japan, August 2013. Inria.
    @proceedings{pennec:hal-00873631,
    TITLE = {{Proceedings of the Fourth International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Biological Shape Variability Modeling (MFCA 2013), Nagoya, Japan}},
    AUTHOR = {Pennec, Xavier and Joshi, Sarang and Nielsen, Mads and Fletcher, Thomas P. and Durrleman, Stanley and Sommer, Stefan},
    url-hal= {https://hal.inria.fr/hal-00873631},
    EDITOR = {Pennec and Xavier and Joshi and Sarang and Nielsen and Mads and Fletcher and Tom P. and Durrleman and Stanley and Sommer and Stefan},
    PUBLISHER = {{Inria}},
    PAGES = {132},
    YEAR = {2013},
    MONTH = Aug,
    PDF = {https://hal.inria.fr/hal-00873631/file/MFCA2013_Proceedings.pdf},
    HAL_ID = {hal-00873631},
    HAL_VERSION = {v1},
    
    }
    


Thesis

  1. Marine Breuilly. Small animal 4D SPECT imaging : assessment of respiratory motion and iodide biodistribution. Theses, Université Nice Sophia Antipolis, November 2013. Keyword(s): Compartmental analysis, 99mTc-pertechnetate biodistribution, Respiratory gating, Respiratory motion, Dynamic images, Small animal, SPECT, Analyse compartimentale, Biodistribution du 99mTc-pertechnétate, TEMP, Petit animal, Images dynamiques, Mouvement respiratoire, Synchronisation respiratoire.
    @phdthesis{breuilly:tel-00908962,
    TITLE = {{Small animal 4D SPECT imaging : assessment of respiratory motion and iodide biodistribution}},
    AUTHOR = {Breuilly, Marine},
    url-hal= {https://tel.archives-ouvertes.fr/tel-00908962},
    NUMBER = {2013NICE4100},
    SCHOOL = {{Universit{\'e} Nice Sophia Antipolis}},
    YEAR = {2013},
    MONTH = Nov,
    KEYWORDS = {Compartmental analysis ; 99mTc-pertechnetate biodistribution ; Respiratory gating ; Respiratory motion ; Dynamic images ; Small animal ; SPECT ; Analyse compartimentale ; Biodistribution du 99mTc-pertechn{\'e}tate ; TEMP ; Petit animal ; Images dynamiques ; Mouvement respiratoire ; Synchronisation respiratoire},
    TYPE = {Theses},
    PDF = {https://tel.archives-ouvertes.fr/tel-00908962/file/2013NICE4100.pdf},
    HAL_ID = {tel-00908962},
    HAL_VERSION = {v3},
    
    }
    


  2. Ezequiel Geremia. Spatial random forests for brain lesions segmentation in MRIs and model-based tumor cell extrapolation. Theses, Université Nice Sophia Antipolis, January 2013. Keyword(s): Gliomas, Random forests, Multiple sclerosis, MRI, Segmentation, Regression, Cell density, IRM, Forêts aléatoires, Sclérose en plaques, Gliomes, Densité cellulaire.
    @phdthesis{geremia:tel-00838795,
    TITLE = {{Spatial random forests for brain lesions segmentation in MRIs and model-based tumor cell extrapolation}},
    AUTHOR = {Geremia, Ezequiel},
    url-hal= {https://tel.archives-ouvertes.fr/tel-00838795},
    NUMBER = {2013NICE4007},
    SCHOOL = {{Universit{\'e} Nice Sophia Antipolis}},
    YEAR = {2013},
    MONTH = Jan,
    KEYWORDS = {Gliomas ; Random forests ; Multiple sclerosis ; MRI ; Segmentation ; Regression ; Cell density ; IRM ; For{\^e}ts al{\'e}atoires ; Scl{\'e}rose en plaques ; Gliomes ; Densit{\'e} cellulaire},
    TYPE = {Theses},
    PDF = {https://tel.archives-ouvertes.fr/tel-00838795/file/2013NICE4007.pdf},
    HAL_ID = {tel-00838795},
    HAL_VERSION = {v1},
    
    }
    


  3. Stephanie Marchesseau. Simulation of patient-specific cardiac models for therapy planning. Theses, Ecole Nationale Supérieure des Mines de Paris, January 2013. Keyword(s): Cardiac modeling, Cardiac mechanics, Computer model, Medical imaging, Patient-specific, Specificity analysis, Modélisation Cardiaque, Mécanique Cardiaque, Modèle Informatique, Imagerie Médicale, Personnalisation, Etude de Spécificité.
    @phdthesis{marchesseau:pastel-00820082,
    TITLE = {{Simulation of patient-specific cardiac models for therapy planning}},
    AUTHOR = {Marchesseau, Stephanie},
    url-hal= {https://pastel.archives-ouvertes.fr/pastel-00820082},
    NUMBER = {2012ENMP0082},
    SCHOOL = {{Ecole Nationale Sup{\'e}rieure des Mines de Paris}},
    YEAR = {2013},
    MONTH = Jan,
    KEYWORDS = {Cardiac modeling ; Cardiac mechanics ; Computer model ; Medical imaging ; Patient-specific ; Specificity analysis ; Mod{\'e}lisation Cardiaque ; M{\'e}canique Cardiaque ; Mod{\`e}le Informatique ; Imagerie M{\'e}dicale ; Personnalisation ; Etude de Sp{\'e}cificit{\'e}},
    TYPE = {Theses},
    PDF = {https://pastel.archives-ouvertes.fr/pastel-00820082/file/2012ENMP0082.pdf},
    HAL_ID = {pastel-00820082},
    HAL_VERSION = {v1},
    
    }
    


  4. Kristin Mcleod. Reduced-order statistical models of cardiac growth, motion and blood flow : application to the tetralogy of Fallot heart. Theses, Université Nice Sophia Antipolis, November 2013. Keyword(s): Tetralogy of Fallot, Statistical model reduction, Non-rigid registration, Medical image analysis, Analyse d'images médicales, Recalage, Modèles statistiques réduits, Tétralogie de Fallot.
    @phdthesis{mcleod:tel-00942556,
    TITLE = {{Reduced-order statistical models of cardiac growth, motion and blood flow : application to the tetralogy of Fallot heart}},
    AUTHOR = {Mcleod, Kristin},
    url-hal= {https://tel.archives-ouvertes.fr/tel-00942556},
    NUMBER = {2013NICE4091},
    SCHOOL = {{Universit{\'e} Nice Sophia Antipolis}},
    YEAR = {2013},
    MONTH = Nov,
    KEYWORDS = {Tetralogy of Fallot ; Statistical model reduction ; Non-rigid registration ; Medical image analysis ; Analyse d'images m{\'e}dicales ; Recalage ; Mod{\`e}les statistiques r{\'e}duits ; T{\'e}tralogie de Fallot},
    TYPE = {Theses},
    PDF = {https://tel.archives-ouvertes.fr/tel-00942556/file/2013NICE4091.pdf},
    HAL_ID = {tel-00942556},
    HAL_VERSION = {v1},
    
    }
    


  5. Adityo Prakosa. Analysis and simulation of multimodal cardiac images to study the heart function. Theses, Université Nice Sophia Antipolis, January 2013. Keyword(s): Cardiac motion tracking, Synthetic cardiac sequences, Cardiac inverse electro-kinematic learning, Suivi de mouvement cardiaque, Simulation de séquences synthétiques d'images cardiaque, Problème inverse du couplage électro-cinématique.
    @phdthesis{prakosa:tel-00837857,
    TITLE = {{Analysis and simulation of multimodal cardiac images to study the heart function}},
    AUTHOR = {Prakosa, Adityo},
    url-hal= {https://tel.archives-ouvertes.fr/tel-00837857},
    NUMBER = {2013NICE4003},
    SCHOOL = {{Universit{\'e} Nice Sophia Antipolis}},
    YEAR = {2013},
    MONTH = Jan,
    KEYWORDS = {Cardiac motion tracking ; Synthetic cardiac sequences ; Cardiac inverse electro-kinematic learning ; Suivi de mouvement cardiaque ; Simulation de s{\'e}quences synth{\'e}tiques d'images cardiaque ; Probl{\`e}me inverse du couplage {\'e}lectro-cin{\'e}matique},
    TYPE = {Theses},
    PDF = {https://tel.archives-ouvertes.fr/tel-00837857/file/2013NICE4003.pdf},
    HAL_ID = {tel-00837857},
    HAL_VERSION = {v1},
    
    }
    


Articles in journal, book chapters

  1. Marine Breuilly, Grégoire Malandain, Julien Guglielmi, Robert Marsault, Thierry Pourcher, Philippe R. Franken, and Jacques Darcourt. Amplitude-based data selection for optimal retrospective reconstruction in micro-SPECT. Physics in Medicine and Biology, 58(8):2657-2674, April 2013.
    @article{breuilly:hal-00799381,
    TITLE = {{Amplitude-based data selection for optimal retrospective reconstruction in micro-SPECT}},
    AUTHOR = {Breuilly, Marine and Malandain, Gr{\'e}goire and Guglielmi, Julien and Marsault, Robert and Pourcher, Thierry and Franken, Philippe R. and Darcourt, Jacques},
    url-hal= {https://hal.inria.fr/hal-00799381},
    JOURNAL = {{Physics in Medicine and Biology}},
    PUBLISHER = {{IOP Publishing}},
    VOLUME = {58},
    NUMBER = {8},
    PAGES = {2657-2674},
    YEAR = {2013},
    MONTH = Apr,
    DOI = {10.1088/0031-9155/58/8/2657},
    PDF = {https://hal.inria.fr/hal-00799381/file/BREUILLY_PMB_2013.pdf},
    HAL_ID = {hal-00799381},
    HAL_VERSION = {v1},
    
    }
    


  2. François Chung and Hervé Delingette. Regional Appearance Modeling based on the Clustering of Intensity Profiles. Computer Vision and Image Understanding, 117(6):705-717, 2013.
    @article{chung:hal-00813880,
    TITLE = {{Regional Appearance Modeling based on the Clustering of Intensity Profiles}},
    AUTHOR = {Chung, Fran{\c c}ois and Delingette, Herv{\'e}},
    url-hal= {https://hal.inria.fr/hal-00813880},
    JOURNAL = {{Computer Vision and Image Understanding}},
    PUBLISHER = {{Elsevier}},
    VOLUME = {117},
    NUMBER = {6},
    PAGES = {705-717},
    YEAR = {2013},
    DOI = {10.1016/j.cviu.2013.01.011},
    PDF = {https://hal.inria.fr/hal-00813880/file/Chung-CVIU-2013.pdf},
    HAL_ID = {hal-00813880},
    HAL_VERSION = {v1},
    
    }
    


  3. Hubert Cochet, Y. Komatsu, F. Sacher, A. Jadidi, D. Scherr, M. Riffaud, N. Derval, A. Shah, L. Roten, P. Pascale, Jatin Relan, Maxime Sermesant, Nicholas Ayache, M. Montaudon, F. Laurent, M. Hocini, M. Haïssaguerre, and Pierre Jaïs. Integration of Merged Delayed-Enhanced Magnetic Resonance Imaging and Multi-Detector Computed Tomography for the Guidance of Ventricular Tachycardia Ablation: A Pilot Study. Journal of Cardiovascular Electrophysiology, 24(4):419-426, April 2013.
    @article{cochet:hal-00813820,
    TITLE = {{Integration of Merged Delayed-Enhanced Magnetic Resonance Imaging and Multi-Detector Computed Tomography for the Guidance of Ventricular Tachycardia Ablation: A Pilot Study}},
    AUTHOR = {Cochet, Hubert and Komatsu, Y. and Sacher, F. and Jadidi, A. and Scherr, D. and Riffaud, M. and Derval, N. and Shah, A. and Roten, L. and Pascale, P. and Relan, Jatin and Sermesant, Maxime and Ayache, Nicholas and Montaudon, M. and Laurent, F. and Hocini, M. and Ha{\"i}ssaguerre, M. and Ja{\"i}s, Pierre},
    url-hal= {https://hal.inria.fr/hal-00813820},
    JOURNAL = {{Journal of Cardiovascular Electrophysiology}},
    PUBLISHER = {{Wiley}},
    VOLUME = {24},
    NUMBER = {4},
    PAGES = {419-426},
    YEAR = {2013},
    MONTH = Apr,
    DOI = {10.1111/jce.12052},
    HAL_ID = {hal-00813820},
    HAL_VERSION = {v1},
    
    }
    


  4. Mathieu De Craene, Stéphanie Marchesseau, Brecht Heyde, Hang Gao, M. Alessandrini, Olivier Bernard, Gemma Piella, Antonio Porras, Lennart Tautz, Anja Hennemuth, Adityo Prakosa, Hervé Liebgott, Oudom Somphone, Pascal Allain, S. Makram Ebeid, Hervé Delingette, Maxime Sermesant, Jan D'Hooge, and Eric Saloux. 3D strain assessment in ultrasound (straus): A synthetic comparison of five tracking methodologies. IEEE Transactions on Medical Imaging, 32(9):1632 - 1646, 2013.
    @article{decraene:hal-00840039,
    TITLE = {{3D strain assessment in ultrasound (straus): A synthetic comparison of five tracking methodologies}},
    AUTHOR = {De Craene, Mathieu and Marchesseau, St{\'e}phanie and Heyde, Brecht and Gao, Hang and Alessandrini, M. and Bernard, Olivier and Piella, Gemma and Porras, Antonio and Tautz, Lennart and Hennemuth, Anja and Prakosa, Adityo and Liebgott, Herv{\'e} and Somphone, Oudom and Allain, Pascal and Ebeid, S. Makram and Delingette, Herv{\'e} and Sermesant, Maxime and D'Hooge, Jan and Saloux, Eric},
    url-hal= {https://hal.inria.fr/hal-00840039},
    JOURNAL = {{IEEE Transactions on Medical Imaging}},
    PUBLISHER = {{Institute of Electrical and Electronics Engineers}},
    VOLUME = {32},
    NUMBER = {9},
    PAGES = {1632 - 1646},
    YEAR = {2013},
    DOI = {10.1109/TMI.2013.2261823},
    PDF = {https://hal.inria.fr/hal-00840039/file/TMI-2013-0246.pdf},
    HAL_ID = {hal-00840039},
    HAL_VERSION = {v1},
    
    }
    


  5. Stanley Durrleman, Xavier Pennec, Alain Trouvé, José Braga, Guido Gerig, and Nicholas Ayache. Toward a Comprehensive Framework for the Spatiotemporal Statistical Analysis of Longitudinal Shape Data. International Journal of Computer Vision, 103(1):22-59, May 2013.
    @article{durrleman:hal-00813825,
    TITLE = {{Toward a Comprehensive Framework for the Spatiotemporal Statistical Analysis of Longitudinal Shape Data}},
    AUTHOR = {Durrleman, Stanley and Pennec, Xavier and Trouv{\'e}, Alain and Braga, Jos{\'e} and Gerig, Guido and Ayache, Nicholas},
    url-hal= {https://hal.inria.fr/hal-00813825},
    JOURNAL = {{International Journal of Computer Vision}},
    PUBLISHER = {{Springer Verlag}},
    VOLUME = {103},
    NUMBER = {1},
    PAGES = {22-59},
    YEAR = {2013},
    MONTH = May,
    DOI = {10.1007/s11263-012-0592-x},
    PDF = {https://hal.inria.fr/hal-00813825/file/Durrleman_IJCV_2012_Longitudinal.pdf},
    HAL_ID = {hal-00813825},
    HAL_VERSION = {v1},
    
    }
    


  6. Alejandro F. Frangi, D. Rod Hose, Peter J. Hunter, Nicholas Ayache, and Dana Brooks. Guest Editorial Special Issue on Medical Imaging and Image Computing in Computational Physiology. IEEE Transactions on Medical Imaging, 32(1):1-7, January 2013.
    @article{frangi:hal-01355239,
    TITLE = {{Guest Editorial Special Issue on Medical Imaging and Image Computing in Computational Physiology}},
    AUTHOR = {Frangi, Alejandro F. and Hose, D. Rod and Hunter, Peter J. and Ayache, Nicholas and Brooks, Dana},
    url-hal= {https://hal.inria.fr/hal-01355239},
    JOURNAL = {{IEEE Transactions on Medical Imaging}},
    PUBLISHER = {{Institute of Electrical and Electronics Engineers}},
    VOLUME = {32},
    NUMBER = {1},
    PAGES = {1-7},
    YEAR = {2013},
    MONTH = Jan,
    DOI = {10.1109/TMI.2012.2234320},
    PDF = {https://hal.inria.fr/hal-01355239/file/IEEE_TMI_MIinCP_v7.pdf},
    HAL_ID = {hal-01355239},
    HAL_VERSION = {v1},
    
    }
    


  7. Amir S. Jadidi, Hubert Cochet, Ashok J. Shah, Steven J. Kim, Edward Duncan, Shinsuke Miyazaki, Maxime Sermesant, Heiko Lehrmann, Matthieu Lederlin, Nick Linton, Andrei Forclaz, Isabelle Nault, Lena Rivard, Matthew Wright, Xingpeng Liu, Daniel Scherr, Stephen B. Wilton, Laurent Roten, Patrizio Pascale, Nicolas Derval, Frédéric Sacher, Sebastian Knecht, Cornelius Keyl, Mélèze Hocini, Michel Montaudon, François Laurent, Michel Haïssaguerre, and Pierre Jaïs. Inverse relationship between fractionated electrograms and atrial fibrosis in persistent atrial fibrillation: combined magnetic resonance imaging and high-density mapping. Journal of the American College of Cardiology, 62(9):802-812, 2013.
    @article{jadidi:hal-00855926,
    TITLE = {{Inverse relationship between fractionated electrograms and atrial fibrosis in persistent atrial fibrillation: combined magnetic resonance imaging and high-density mapping}},
    AUTHOR = {Jadidi, Amir S. and Cochet, Hubert and Shah, Ashok J. and Kim, Steven J. and Duncan, Edward and Miyazaki, Shinsuke and Sermesant, Maxime and Lehrmann, Heiko and Lederlin, Matthieu and Linton, Nick and Forclaz, Andrei and Nault, Isabelle and Rivard, Lena and Wright, Matthew and Liu, Xingpeng and Scherr, Daniel and Wilton, Stephen B. and Roten, Laurent and Pascale, Patrizio and Derval, Nicolas and Sacher, Fr{\'e}d{\'e}ric and Knecht, Sebastian and Keyl, Cornelius and Hocini, M{\'e}l{\`e}ze and Montaudon, Michel and Laurent, Fran{\c c}ois and Ha{\"i}ssaguerre, Michel and Ja{\"i}s, Pierre},
    url-hal= {https://hal.inria.fr/hal-00855926},
    JOURNAL = {{Journal of the American College of Cardiology}},
    HAL_LOCAL_REFERENCE = {9},
    PUBLISHER = {{Elsevier}},
    VOLUME = {62},
    NUMBER = {9},
    PAGES = {802-812},
    YEAR = {2013},
    DOI = {10.1016/j.jacc.2013.03.081},
    PDF = {https://hal.inria.fr/hal-00855926/file/93795_1_merged_1363700367.pdf},
    HAL_ID = {hal-00855926},
    HAL_VERSION = {v1},
    
    }
    


  8. Yuki Komatsu, Hubert Cochet, Amir Jadidi, Frédéric Sacher, Ashok Shah, Nicolas Derval, Daniel Scherr, Patrizio Pascale, Laurent Roten, Arnaud Denis, Khaled Ramoul, Shinsuke Miyazaki, Matthew Daly, Matthieu Riffaud, Maxime Sermesant, Jatin Relan, Nicholas Ayache, Steven Kim, Michel Montaudon, François Laurent, Mélèze Hocini, Michel Haïssaguerre, and Pierre Jaïs. Regional myocardial wall thinning at multidetector computed tomography correlates to arrhythmogenic substrate in postinfarction ventricular tachycardia: assessment of structural and electrical substrate. Circulation. Arrhythmia and electrophysiology, 6(2):342-350, 2013.
    @article{komatsu:hal-00855932,
    TITLE = {{Regional myocardial wall thinning at multidetector computed tomography correlates to arrhythmogenic substrate in postinfarction ventricular tachycardia: assessment of structural and electrical substrate}},
    AUTHOR = {Komatsu, Yuki and Cochet, Hubert and Jadidi, Amir and Sacher, Fr{\'e}d{\'e}ric and Shah, Ashok and Derval, Nicolas and Scherr, Daniel and Pascale, Patrizio and Roten, Laurent and Denis, Arnaud and Ramoul, Khaled and Miyazaki, Shinsuke and Daly, Matthew and Riffaud, Matthieu and Sermesant, Maxime and Relan, Jatin and Ayache, Nicholas and Kim, Steven and Montaudon, Michel and Laurent, Fran{\c c}ois and Hocini, M{\'e}l{\`e}ze and Ha{\"i}ssaguerre, Michel and Ja{\"i}s, Pierre},
    url-hal= {https://hal.inria.fr/hal-00855932},
    JOURNAL = {{Circulation. Arrhythmia and electrophysiology}},
    PUBLISHER = {{Lippincott Williams \& Wilkins}},
    VOLUME = {6},
    NUMBER = {2},
    PAGES = {342-350},
    YEAR = {2013},
    DOI = {10.1161/CIRCEP.112.000191},
    HAL_ID = {hal-00855932},
    HAL_VERSION = {v1},
    
    }
    


  9. Benedetta Leonardi, Andrew Taylor, Tommaso Mansi, Ingmar Voigt, Maxime Sermesant, Xavier Pennec, Nicholas Ayache, Younes Boudjemline, and Giacomo Pongiglione. Computational modelling of the right ventricle in repaired tetralogy of Fallot: can it provide insight into patient treatment?. European Heart Journal - Cardiovascular Imaging, 14(4):381-6, April 2013.
    @article{leonardi:hal-00813831,
    TITLE = {{Computational modelling of the right ventricle in repaired tetralogy of Fallot: can it provide insight into patient treatment?}},
    AUTHOR = {Leonardi, Benedetta and Taylor, Andrew and Mansi, Tommaso and Voigt, Ingmar and Sermesant, Maxime and Pennec, Xavier and Ayache, Nicholas and Boudjemline, Younes and Pongiglione, Giacomo},
    url-hal= {https://hal.inria.fr/hal-00813831},
    JOURNAL = {{European Heart Journal - Cardiovascular Imaging}},
    PUBLISHER = {{Oxford UP}},
    VOLUME = {14},
    NUMBER = {4},
    PAGES = {381-6},
    YEAR = {2013},
    MONTH = Apr,
    DOI = {10.1093/ehjci/jes239},
    PDF = {https://hal.inria.fr/hal-00813831/file/EHJCI-2013.pdf},
    HAL_ID = {hal-00813831},
    HAL_VERSION = {v1},
    
    }
    


  10. Marco Lorenzi, Nicholas Ayache, Giovanni B. Frisoni, and Xavier Pennec. LCC-Demons: a robust and accurate symmetric diffeomorphic registration algorithm. NeuroImage, 81(1):470-483, 2013.
    @article{lorenzi:hal-00819895,
    TITLE = {{LCC-Demons: a robust and accurate symmetric diffeomorphic registration algorithm}},
    AUTHOR = {Lorenzi, Marco and Ayache, Nicholas and Frisoni, Giovanni B. and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-00819895},
    JOURNAL = {{NeuroImage}},
    PUBLISHER = {{Elsevier}},
    VOLUME = {81},
    NUMBER = {1},
    PAGES = {470-483},
    YEAR = {2013},
    DOI = {10.1016/j.neuroimage.2013.04.114},
    PDF = {https://hal.inria.fr/hal-00819895/file/Lorenzi-LCC2012.pdf},
    HAL_ID = {hal-00819895},
    HAL_VERSION = {v2},
    
    }
    


  11. Marco Lorenzi and Xavier Pennec. Efficient Parallel Transport of Deformations in Time Series of Images: from Schild's to Pole Ladder. Journal of Mathematical Imaging and Vision, 50(1-2):5-17, October 2013.
    @article{lorenzi:hal-00870489,
    TITLE = {{Efficient Parallel Transport of Deformations in Time Series of Images: from Schild's to Pole Ladder}},
    AUTHOR = {Lorenzi, Marco and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-00870489},
    JOURNAL = {{Journal of Mathematical Imaging and Vision}},
    PUBLISHER = {{Springer Verlag}},
    VOLUME = {50},
    NUMBER = {1-2},
    PAGES = {5-17},
    YEAR = {2013},
    MONTH = Oct,
    DOI = {10.1007/s10851-013-0470-3},
    PDF = {https://hal.inria.fr/hal-00870489/file/Lorenzi-PoleLadder2013.pdf},
    HAL_ID = {hal-00870489},
    HAL_VERSION = {v1},
    
    }
    


  12. Marco Lorenzi and Xavier Pennec. Geodesics, Parallel Transport & One-parameter Subgroups for Diffeomorphic Image Registration. International Journal of Computer Vision, 105(2):111-127, November 2013.
    @article{lorenzi:hal-00813835,
    TITLE = {{Geodesics, Parallel Transport \& One-parameter Subgroups for Diffeomorphic Image Registration}},
    AUTHOR = {Lorenzi, Marco and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-00813835},
    JOURNAL = {{International Journal of Computer Vision}},
    PUBLISHER = {{Springer Verlag}},
    SERIES = {International Journal of Computer Vision},
    VOLUME = {105},
    NUMBER = {2},
    PAGES = {111-127},
    YEAR = {2013},
    MONTH = Nov,
    DOI = {10.1007/s11263-012-0598-4},
    PDF = {https://hal.inria.fr/hal-00813835/file/Lorenzi-IJCV2012.pdf},
    HAL_ID = {hal-00813835},
    HAL_VERSION = {v1},
    
    }
    


  13. Stéphanie Marchesseau, Hervé Delingette, Maxime Sermesant, Rocio Cabrera Lozoya, Catalina Tobon-Gomez, Philippe Moireau, Rosa Maria Figueras I Ventura, Karim Lekadir, Alfredo Hernandez, Mireille Garreau, Erwan Donal, Christophe Leclercq, Simon G. Duckett, Kawal Rhode, Christopher Aldo Rinaldi, Alejandro F. Frangi, Reza Razavi, Dominique Chapelle, and Nicholas Ayache. Personalization of a Cardiac Electromechanical Model using Reduced Order Unscented Kalman Filtering from Regional Volumes. Medical Image Analysis, 17(7):816-829, May 2013.
    @article{marchesseau:hal-00819806,
    TITLE = {{Personalization of a Cardiac Electromechanical Model using Reduced Order Unscented Kalman Filtering from Regional Volumes}},
    AUTHOR = {Marchesseau, St{\'e}phanie and Delingette, Herv{\'e} and Sermesant, Maxime and Cabrera Lozoya, Rocio and Tobon-Gomez, Catalina and Moireau, Philippe and Figueras I Ventura, Rosa Maria and Lekadir, Karim and Hernandez, Alfredo and Garreau, Mireille and Donal, Erwan and Leclercq, Christophe and Duckett, Simon G. and Rhode, Kawal and Rinaldi, Christopher Aldo and Frangi, Alejandro F. and Razavi, Reza and Chapelle, Dominique and Ayache, Nicholas},
    url-hal= {https://hal.inria.fr/hal-00819806},
    JOURNAL = {{Medical Image Analysis}},
    PUBLISHER = {{Elsevier}},
    VOLUME = {17},
    NUMBER = {7},
    PAGES = {816-829},
    YEAR = {2013},
    MONTH = May,
    DOI = {10.1016/j.media.2013.04.012},
    PDF = {https://hal.inria.fr/hal-00819806/file/Finalmanuscript.pdf},
    HAL_ID = {hal-00819806},
    HAL_VERSION = {v1},
    
    }
    


  14. Stéphanie Marchesseau, Hervé Delingette, Maxime Sermesant, Michel Sorine, Kawal Rhode, Simon G. Duckett, Christopher Aldo Rinaldi, Reza Razavi, and Nicholas Ayache. Preliminary Specificity Study of the Bestel-Clément-Sorine Electromechanical Model of the Heart using Parameter Calibration from Medical Images. Journal of the mechanical behavior of biomedical materials, 20:259-271, 2013.
    @article{marchesseau:hal-00813849,
    TITLE = {{Preliminary Specificity Study of the Bestel-Cl{\'e}ment-Sorine Electromechanical Model of the Heart using Parameter Calibration from Medical Images}},
    AUTHOR = {Marchesseau, St{\'e}phanie and Delingette, Herv{\'e} and Sermesant, Maxime and Sorine, Michel and Rhode, Kawal and Duckett, Simon G. and Rinaldi, Christopher Aldo and Razavi, Reza and Ayache, Nicholas},
    url-hal= {https://hal.inria.fr/hal-00813849},
    JOURNAL = {{Journal of the mechanical behavior of biomedical materials}},
    PUBLISHER = {{Elsevier}},
    VOLUME = {20},
    PAGES = {259-271},
    YEAR = {2013},
    DOI = {10.1016/j.jmbbm.2012.11.021},
    PDF = {https://hal.inria.fr/hal-00813849/file/mbioMarchesseau2012.pdf},
    HAL_ID = {hal-00813849},
    HAL_VERSION = {v1},
    
    }
    


  15. Bjoern Menze, Georg Langs, Zhuowen Tu, and Antonio Criminisi. Whole-body anatomy localization via classification and regression forests. Medical Image Analysis, 17(8):1282, December 2013.
    @article{menze:hal-00917886,
    TITLE = {{Whole-body anatomy localization via classification and regression forests}},
    AUTHOR = {Menze, Bjoern and Langs, Georg and Tu, Zhuowen and Criminisi, Antonio},
    url-hal= {https://hal.inria.fr/hal-00917886},
    JOURNAL = {{Medical Image Analysis}},
    PUBLISHER = {{Elsevier}},
    VOLUME = {17},
    NUMBER = {8},
    PAGES = {1282},
    YEAR = {2013},
    MONTH = Dec,
    DOI = {10.1016/j.media.2013.09.005},
    HAL_ID = {hal-00917886},
    HAL_VERSION = {v1},
    
    }
    


  16. Katja E. Odening, Bernd A. Jung, Corinna N. Lang, Rocio Cabrera Lozoya, David Ziupa, Marius Menza, Jatin Relan, Gerlind Franke, Stefanie Perez Feliz, Gideon Koren, Manfred Zehender, Christoph Bode, Michael Brunner, Maxime Sermesant, and Daniela Föll. Spatial Correlation of Action Potential Duration and Diastolic Dysfunction in Transgenic and Drug-induced LQT2 Rabbits. Heart Rhythm, 10(10):1533-1541, 2013. Note: Focus Issue: Sudden Cardiac Death.
    @article{odening:hal-00855929,
    TITLE = {{Spatial Correlation of Action Potential Duration and Diastolic Dysfunction in Transgenic and Drug-induced LQT2 Rabbits}},
    AUTHOR = {Odening, Katja E. and Jung, Bernd A. and Lang, Corinna N. and Cabrera Lozoya, Rocio and Ziupa, David and Menza, Marius and Relan, Jatin and Franke, Gerlind and Perez Feliz, Stefanie and Koren, Gideon and Zehender, Manfred and Bode, Christoph and Brunner, Michael and Sermesant, Maxime and F{\"o}ll, Daniela},
    url-hal= {https://hal.inria.fr/hal-00855929},
    NOTE = {Focus Issue: Sudden Cardiac Death},
    JOURNAL = {{Heart Rhythm}},
    PUBLISHER = {{Elsevier}},
    VOLUME = {10},
    NUMBER = {10},
    PAGES = {1533-1541},
    YEAR = {2013},
    DOI = {10.1016/j.hrthm.2013.07.038},
    HAL_ID = {hal-00855929},
    HAL_VERSION = {v1},
    
    }
    


  17. A. Prakosa, Maxime Sermesant, H. Delingette, S. Marchesseau, E. Saloux, Pascal Allain, N. Villain, and Nicholas Ayache. Generation of Synthetic but Visually Realistic Time Series of Cardiac Images Combining a Biophysical Model and Clinical Images. IEEE Transactions on Medical Imaging, 32(1):99-109, January 2013.
    @article{prakosa:hal-00813861,
    TITLE = {{Generation of Synthetic but Visually Realistic Time Series of Cardiac Images Combining a Biophysical Model and Clinical Images}},
    AUTHOR = {Prakosa, A. and Sermesant, Maxime and Delingette, H. and Marchesseau, S. and Saloux, E. and Allain, Pascal and Villain, N. and Ayache, Nicholas},
    url-hal= {https://hal.inria.fr/hal-00813861},
    JOURNAL = {{IEEE Transactions on Medical Imaging}},
    PUBLISHER = {{Institute of Electrical and Electronics Engineers}},
    VOLUME = {32},
    NUMBER = {1},
    PAGES = {99-109},
    YEAR = {2013},
    MONTH = Jan,
    DOI = {10.1109/TMI.2012.2220375},
    PDF = {https://hal.inria.fr/hal-00813861/file/PrakosaTMI2012.pdf},
    HAL_ID = {hal-00813861},
    HAL_VERSION = {v1},
    
    }
    


  18. Islem Rekik, Stéphanie Allassonnière, Olivier Clatz, Ezequiel Geremia, Erin Stretton, Hervé Delingette, and Nicholas Ayache. Tumor Growth Parameters Estimation and Source Localization From a Unique Time Point: Application to Low-grade Gliomas. Computer Vision and Image Understanding, 117(3):238-249, 2013.
    @article{rekik:hal-00813881,
    TITLE = {{Tumor Growth Parameters Estimation and Source Localization From a Unique Time Point: Application to Low-grade Gliomas}},
    AUTHOR = {Rekik, Islem and Allassonni{\`e}re, St{\'e}phanie and Clatz, Olivier and Geremia, Ezequiel and Stretton, Erin and Delingette, Herv{\'e} and Ayache, Nicholas},
    url-hal= {https://hal.inria.fr/hal-00813881},
    JOURNAL = {{Computer Vision and Image Understanding}},
    PUBLISHER = {{Elsevier}},
    VOLUME = {117},
    NUMBER = {3},
    PAGES = {238--249},
    YEAR = {2013},
    DOI = {10.1016/j.cviu.2012.11.001},
    PDF = {https://hal.inria.fr/hal-00813881/file/Rekik-CVIU-2013.pdf},
    HAL_ID = {hal-00813881},
    HAL_VERSION = {v1},
    
    }
    


  19. Stefan Sommer, François Lauze, Mads Nielsen, and Xavier Pennec. Sparse Multi-Scale Diffeomorphic Registration: the Kernel Bundle Framework. Journal of Mathematical Imaging and Vision, 46(3):292-308, 2013.
    @article{sommer:hal-00813868,
    TITLE = {{Sparse Multi-Scale Diffeomorphic Registration: the Kernel Bundle Framework}},
    AUTHOR = {Sommer, Stefan and Lauze, Fran{\c c}ois and Nielsen, Mads and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-00813868},
    JOURNAL = {{Journal of Mathematical Imaging and Vision}},
    PUBLISHER = {{Springer Verlag}},
    VOLUME = {46},
    NUMBER = {3},
    PAGES = {292-308},
    YEAR = {2013},
    DOI = {10.1007/s10851-012-0409-0},
    PDF = {https://hal.inria.fr/hal-00813868/file/Sommer_JMIV2013.pdf},
    HAL_ID = {hal-00813868},
    HAL_VERSION = {v1},
    
    }
    


  20. Stefan Sommer, Mads Nielsen, Sune Darkner, and Xavier Pennec. Higher-order momentum distributions and locally affine LDDMM registration. SIAM Journal on Imaging Sciences, 6(1):341-367, February 2013.
    @article{sommer:hal-00813869,
    TITLE = {{Higher-order momentum distributions and locally affine LDDMM registration}},
    AUTHOR = {Sommer, Stefan and Nielsen, Mads and Darkner, Sune and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-00813869},
    JOURNAL = {{SIAM Journal on Imaging Sciences}},
    PUBLISHER = {{Society for Industrial and Applied Mathematics}},
    VOLUME = {6},
    NUMBER = {1},
    PAGES = {341-367},
    YEAR = {2013},
    MONTH = Feb,
    DOI = {10.1137/110859002},
    HAL_ID = {hal-00813869},
    HAL_VERSION = {v1},
    
    }
    


  21. Hugo Talbot, Stéphanie Marchesseau, Christian Duriez, Maxime Sermesant, Stéphane Cotin, and Hervé Delingette. Towards an Interactive Electromechanical Model of the Heart. Interface Focus, 3(2):4, April 2013. Keyword(s): electrophysiology cardiac mechanics training simulation interactive SOFA framework.
    @article{talbot:hal-00797354,
    TITLE = {{Towards an Interactive Electromechanical Model of the Heart}},
    AUTHOR = {Talbot, Hugo and Marchesseau, St{\'e}phanie and Duriez, Christian and Sermesant, Maxime and Cotin, St{\'e}phane and Delingette, Herv{\'e}},
    url-hal= {https://hal.inria.fr/hal-00797354},
    JOURNAL = {{Interface Focus}},
    PUBLISHER = {{Royal Society publishing}},
    SERIES = {The Virtual Physiological Human: Integrative Approaches to Computational Biomedicine},
    VOLUME = {3},
    NUMBER = {2},
    PAGES = {4},
    YEAR = {2013},
    MONTH = Apr,
    DOI = {10.1098/rsfs.2012.0091},
    KEYWORDS = {electrophysiology cardiac mechanics training simulation interactive SOFA framework},
    PDF = {https://hal.inria.fr/hal-00797354/file/Interface_Focus-2013-Talbot.pdf},
    HAL_ID = {hal-00797354},
    HAL_VERSION = {v1},
    
    }
    


  22. Catalina Tobon-Gomez, Mathieu De Craene, Kristin Mcleod, Lennart Tautz, Wenzhe Shi, Anja Hennemuth, Adityo Prakosa, Hengui Wang, Gerald Carr-White, Sergio Kapetanakis, Albert Lutz, Vernon Rasche, Tobias Schaeffter, Constantin Butakoff, Oskar Friman, Tommaso Mansi, Maxime Sermesant, Xiahai Zhuang, Sébastien Ourselin, Hans Otto Peitgen, Xavier Pennec, Reza Razavi, Daniel Rueckert, Alejandro F. Frangi, and Kawal Rhode. Benchmarking framework for myocardial tracking and deformation algorithms: an open access database. Medical Image Analysis, 17(6):632-648, 2013.
    @article{tobongomez:hal-00855928,
    TITLE = {{Benchmarking framework for myocardial tracking and deformation algorithms: an open access database}},
    AUTHOR = {Tobon-Gomez, Catalina and De Craene, Mathieu and Mcleod, Kristin and Tautz, Lennart and Shi, Wenzhe and Hennemuth, Anja and Prakosa, Adityo and Wang, Hengui and Carr-White, Gerald and Kapetanakis, Sergio and Lutz, Albert and Rasche, Vernon and Schaeffter, Tobias and Butakoff, Constantin and Friman, Oskar and Mansi, Tommaso and Sermesant, Maxime and Zhuang, Xiahai and Ourselin, S{\'e}bastien and Peitgen, Hans Otto and Pennec, Xavier and Razavi, Reza and Rueckert, Daniel and Frangi, Alejandro F. and Rhode, Kawal},
    url-hal= {https://hal.inria.fr/hal-00855928},
    JOURNAL = {{Medical Image Analysis}},
    PUBLISHER = {{Elsevier}},
    VOLUME = {17},
    NUMBER = {6},
    PAGES = {632-648},
    YEAR = {2013},
    DOI = {10.1016/j.media.2013.03.008},
    PDF = {https://hal.inria.fr/hal-00855928/file/tobon-gomez12a_v2.0.pdf},
    HAL_ID = {hal-00855928},
    HAL_VERSION = {v1},
    
    }
    


  23. Catalina Tobon-Gomez, Nicolas Duchateau, Rafael Sebastian, Stéphanie Marchesseau, Oscar Camara, Erwan Donal, Mathieu De Craene, Ali Pashaei, Jatin Relan, Martin Steghofer, Pablo Lamata, Hervé Delingette, Simon G. Duckett, Mireille Garreau, Alfredo Hernandez, Kawal S. Rhode, Maxime Sermesant, Nicholas Ayache, Christophe Leclercq, Reza Razavi, Nicolas P. Smith, and Alejandro F. Frangi. Understanding the mechanisms amenable to CRT response: from pre-operative multimodal image data to patient-specific computational models. Medical and Biological Engineering and Computing, pp 1-16, 2013.
    @article{tobongomez:hal-00840037,
    TITLE = {{Understanding the mechanisms amenable to CRT response: from pre-operative multimodal image data to patient-specific computational models}},
    AUTHOR = {Tobon-Gomez, Catalina and Duchateau, Nicolas and Sebastian, Rafael and Marchesseau, St{\'e}phanie and Camara, Oscar and Donal, Erwan and De Craene, Mathieu and Pashaei, Ali and Relan, Jatin and Steghofer, Martin and Lamata, Pablo and Delingette, Herv{\'e} and Duckett, Simon G. and Garreau, Mireille and Hernandez, Alfredo and Rhode, Kawal S. and Sermesant, Maxime and Ayache, Nicholas and Leclercq, Christophe and Razavi, Reza and Smith, Nicolas P. and Frangi, Alejandro F.},
    url-hal= {https://hal.inria.fr/hal-00840037},
    JOURNAL = {{Medical and Biological Engineering and Computing}},
    PUBLISHER = {{Springer Verlag}},
    PAGES = {1--16},
    YEAR = {2013},
    DOI = {10.1007/s11517-013-1044-7},
    HAL_ID = {hal-00840037},
    HAL_VERSION = {v1},
    
    }
    


  24. Nicolas Toussaint, Christian T. Stoeck, Tobias Schaeffter, Sebastian Kozerke, Maxime Sermesant, and Philip G. Batchelor. In vivo human cardiac fibre architecture estimation using shape-based diffusion tensor processing. Medical Image Analysis, 2013. Note: In press. Keyword(s): Diffusion tensor imaging.
    @article{toussaint:hal-00845062,
    TITLE = {{In vivo human cardiac fibre architecture estimation using shape-based diffusion tensor processing}},
    AUTHOR = {Toussaint, Nicolas and Stoeck, Christian T. and Schaeffter, Tobias and Kozerke, Sebastian and Sermesant, Maxime and Batchelor, Philip G.},
    url-hal= {https://hal.inria.fr/hal-00845062},
    NOTE = {In press},
    JOURNAL = {{Medical Image Analysis}},
    PUBLISHER = {{Elsevier}},
    YEAR = {2013},
    KEYWORDS = {Diffusion tensor imaging},
    HAL_ID = {hal-00845062},
    HAL_VERSION = {v1},
    
    }
    


  25. Jan Unkelbach, Bjoern Menze, Ender Konukoglu, Florian Dittmann, Nicholas Ayache, and Helen Shi. Radiotherapy planning for glioblastoma based on a tumor growth model: implications for spatial dose redistribution. Physics in Medicine and Biology, December 2013.
    @article{unkelbach:hal-00917846,
    TITLE = {{Radiotherapy planning for glioblastoma based on a tumor growth model: implications for spatial dose redistribution}},
    AUTHOR = {Unkelbach, Jan and Menze, Bjoern and Konukoglu, Ender and Dittmann, Florian and Ayache, Nicholas and Shi, Helen},
    url-hal= {https://hal.inria.fr/hal-00917846},
    JOURNAL = {{Physics in Medicine and Biology}},
    PUBLISHER = {{IOP Publishing}},
    YEAR = {2013},
    MONTH = Dec,
    PDF = {https://hal.inria.fr/hal-00917846/file/unkelbach_13_dose.pdf},
    HAL_ID = {hal-00917846},
    HAL_VERSION = {v1},
    
    }
    


  26. Jan Unkelbach, Bjoern Menze, Ender Konukoglu, Florian Dittmann, Matthieu Le, Nicholas Ayache, and Helen Shi. Radiotherapy planning for glioblastoma based on a tumor growth model: improving target volume delineation. Physics in Medicine and Biology, December 2013.
    @article{unkelbach:hal-00917869,
    TITLE = {{Radiotherapy planning for glioblastoma based on a tumor growth model: improving target volume delineation}},
    AUTHOR = {Unkelbach, Jan and Menze, Bjoern and Konukoglu, Ender and Dittmann, Florian and Le, Matthieu and Ayache, Nicholas and Shi, Helen},
    url-hal= {https://hal.inria.fr/hal-00917869},
    JOURNAL = {{Physics in Medicine and Biology}},
    PUBLISHER = {{IOP Publishing}},
    YEAR = {2013},
    MONTH = Dec,
    DOI = {10.1088/0031-9155/59/3/747},
    PDF = {https://hal.inria.fr/hal-00917869/file/Unkelbach-Physics-v2.pdf},
    HAL_ID = {hal-00917869},
    HAL_VERSION = {v2},
    
    }
    


  27. Irina Vidal-Migallón, Olivier Commowick, Xavier Pennec, Julien Dauguet, and Tom Vercauteren. GPU & CPU implementation of Young - Van Vliet's Recursive Gaussian Smoothing Filter. Insight Journal, pp 16, July 2013. Note: Open peer-review journal. Open code / open data. Keyword(s): GPU, OpenCL, Recursive Gaussian Smoothing.
    @article{vidalmigallon:inserm-00855958,
    TITLE = {{GPU \& CPU implementation of Young - Van Vliet's Recursive Gaussian Smoothing Filter}},
    AUTHOR = {Vidal-Migall{\'o}n, Irina and Commowick, Olivier and Pennec, Xavier and Dauguet, Julien and Vercauteren, Tom},
    url-hal= {https://www.hal.inserm.fr/inserm-00855958},
    NOTE = {Open peer-review journal. Open code / open data.},
    JOURNAL = {{Insight Journal}},
    PUBLISHER = {{Insight Software Consortium}},
    PAGES = {16},
    YEAR = {2013},
    MONTH = Jul,
    KEYWORDS = {GPU ; OpenCL ; Recursive Gaussian Smoothing},
    PDF = {https://www.hal.inserm.fr/inserm-00855958/file/IJ_896_3_InsightJournal_YVV.pdf},
    HAL_ID = {inserm-00855958},
    HAL_VERSION = {v1},
    
    }
    


  28. Jürgen Weese, Nicholas Ayache, and Nicolas P. Smith. Personalized Cardiac Modeling and Simulations in euHeart. Medical and Biological Engineering and Computing, 2013. Note: Editorial.
    @article{weese:hal-00851239,
    TITLE = {{Personalized Cardiac Modeling and Simulations in euHeart}},
    AUTHOR = {Weese, J{\"u}rgen and Ayache, Nicholas and Smith, Nicolas P.},
    url-hal= {https://hal.inria.fr/hal-00851239},
    NOTE = {Editorial},
    JOURNAL = {{Medical and Biological Engineering and Computing}},
    PUBLISHER = {{Springer Verlag}},
    YEAR = {2013},
    DOI = {10.1007/s11517-013-1103-0},
    HAL_ID = {hal-00851239},
    HAL_VERSION = {v1},
    
    }
    


  29. Ezequiel Geremia, Darko Zikic, Olivier Clatz, Bjoern H. Menze, Ben Glocker, Ender Konukoglu, Jamie Shotton, O. M. Thomas, S. J. Price, Tilak Das, Raj Jena, Nicholas Ayache, and Antonio Criminisi. Classification Forests for Semantic Segmentation of Brain Lesions in Multi-channel MRI. In Criminisi, Antonio, Shotton, and J., editors, Decision Forests for Computer Vision and Medical Image Analysis, Advances in Computer Vision and Pattern Recognition, pages 245-260. Springer London, 2013.
    @incollection{geremia:hal-00931809,
    TITLE = {{Classification Forests for Semantic Segmentation of Brain Lesions in Multi-channel MRI}},
    AUTHOR = {Geremia, Ezequiel and Zikic, Darko and Clatz, Olivier and Menze, Bjoern H. and Glocker, Ben and Konukoglu, Ender and Shotton, Jamie and Thomas, O. M. and Price, S. J. and Das, Tilak and Jena, Raj and Ayache, Nicholas and Criminisi, Antonio},
    url-hal= {https://hal.inria.fr/hal-00931809},
    BOOKTITLE = {{Decision Forests for Computer Vision and Medical Image Analysis}},
    EDITOR = {Criminisi and Antonio and Shotton and J.},
    PUBLISHER = {{Springer London}},
    SERIES = {Advances in Computer Vision and Pattern Recognition},
    PAGES = {245-260},
    YEAR = {2013},
    DOI = {10.1007/978-1-4471-4929-3\_17},
    PDF = {https://hal.inria.fr/hal-00931809/file/bookDecisionForests_Chapter.pdf},
    HAL_ID = {hal-00931809},
    HAL_VERSION = {v1},
    
    }
    


  30. Kristin Mcleod, Tommaso Mansi, Maxime Sermesant, Giacomo Pongiglione, and Xavier Pennec. Statistical Shape Analysis of Surfaces in Medical Images Applied to the Tetralogy of Fallot Heart. In Frederic Cazals and Pierre Kornprobst, editors, Modeling in Computational Biology and Biomedicine, Lectures Notes in Mathematical and Computational Biology, pages 165-191. Springer, 2013.
    @incollection{mcleod:hal-00813850,
    TITLE = {{Statistical Shape Analysis of Surfaces in Medical Images Applied to the Tetralogy of Fallot Heart}},
    AUTHOR = {Mcleod, Kristin and Mansi, Tommaso and Sermesant, Maxime and Pongiglione, Giacomo and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-00813850},
    BOOKTITLE = {{Modeling in Computational Biology and Biomedicine}},
    EDITOR = {Frederic Cazals and Pierre Kornprobst},
    PUBLISHER = {{Springer}},
    SERIES = {Lectures Notes in Mathematical and Computational Biology},
    PAGES = {165-191},
    YEAR = {2013},
    DOI = {10.1007/978-3-642-31208-3\_5},
    PDF = {https://hal.inria.fr/hal-00813850/file/McLeod_Pennec_CBB.pdf},
    HAL_ID = {hal-00813850},
    HAL_VERSION = {v1},
    
    }
    


Conference articles

  1. Chloé Audigier, Tommaso Mansi, Hervé Delingette, Saikiran Rapaka, Viorel Mihalef, Puneet Sharma, Ali Kamen, Daniel Carnegie, Emad Boctor, Michael Choti, Dorin Comaniciu, and Nicholas Ayache. Lattice Boltzmann Method For Fast Patient-Specific Simulation of Liver Tumor Ablation from CT Images. In Kensaku Mori, Ichiro Sakuma, Yoshinobu Sato, Christian Barillot, and Nassir Navab, editors, MICCAI - Medical Image Computing and Computer Assisted Intervention - 2013, volume 8151 of Lecture Notes in Computer Science - LNCS, Nagoya, Japan, pages 323-330, September 2013. Springer.
    @inproceedings{audigier:hal-00804147,
    TITLE = {{Lattice Boltzmann Method For Fast Patient-Specific Simulation of Liver Tumor Ablation from CT Images}},
    AUTHOR = {Audigier, Chlo{\'e} and Mansi, Tommaso and Delingette, Herv{\'e} and Rapaka, Saikiran and Mihalef, Viorel and Sharma, Puneet and Kamen, Ali and Carnegie, Daniel and Boctor, Emad and Choti, Michael and Comaniciu, Dorin and Ayache, Nicholas},
    url-hal= {https://hal.inria.fr/hal-00804147},
    BOOKTITLE = {{MICCAI - Medical Image Computing and Computer Assisted Intervention - 2013}},
    ADDRESS = {Nagoya, Japan},
    EDITOR = {Kensaku Mori and Ichiro Sakuma and Yoshinobu Sato and Christian Barillot and Nassir Navab},
    PUBLISHER = {{Springer}},
    SERIES = {Lecture Notes in Computer Science - LNCS},
    VOLUME = {8151},
    PAGES = {323-330},
    YEAR = {2013},
    MONTH = Sep,
    DOI = {10.1007/978-3-642-40760-4\_41},
    PDF = {https://hal.inria.fr/hal-00804147/file/paper.pdf},
    HAL_ID = {hal-00804147},
    HAL_VERSION = {v2},
    
    }
    


  2. Thomas Benseghir, Grégoire Malandain, and Régis Vaillant. Iterative Closest Curve: a Framework for Curvilinear Structure Registration Application to 2D/3D Coronary Arteries Registration. In Mori, Kensaku, Sakuma, Ichiro, Sato, Yoshinobu, Barillot, Christian, Navab, and Nassir, editors, MICCAI - Medical Image Computing and Computer Assisted Intervention, volume 8149 of Lecture Notes in Computer Science, Nagoya, Japan, pages 179-186, September 2013. Springer. Keyword(s): registration, curvilinear structure, ICP, chronic total occlusion, CTO, coronary, X-ray, computed tomography angiography, CTA.
    @inproceedings{benseghir:hal-00833196,
    TITLE = {{Iterative Closest Curve: a Framework for Curvilinear Structure Registration Application to 2D/3D Coronary Arteries Registration}},
    AUTHOR = {Benseghir, Thomas and Malandain, Gr{\'e}goire and Vaillant, R{\'e}gis},
    url-hal= {https://hal.archives-ouvertes.fr/hal-00833196},
    BOOKTITLE = {{MICCAI - Medical Image Computing and Computer Assisted Intervention}},
    ADDRESS = {Nagoya, Japan},
    EDITOR = {Mori and Kensaku and Sakuma and Ichiro and Sato and Yoshinobu and Barillot and Christian and Navab and Nassir},
    PUBLISHER = {{Springer}},
    SERIES = {Lecture Notes in Computer Science},
    VOLUME = {8149},
    PAGES = {179-186},
    YEAR = {2013},
    MONTH = Sep,
    DOI = {10.1007/978-3-642-40811-3\_23},
    KEYWORDS = {registration ; curvilinear structure ; ICP ; chronic total occlusion ; CTO ; coronary ; X-ray ; computed tomography angiography ; CTA},
    PDF = {https://hal.archives-ouvertes.fr/hal-00833196/file/paper974.pdf},
    HAL_ID = {hal-00833196},
    HAL_VERSION = {v1},
    
    }
    


  3. Marine Breuilly, Grégoire Malandain, Nicholas Ayache, Julien Guglielmi, Thierry Pourcher, Philippe R. Franken, and Jacques Darcourt. Image-based motion detection in 4D images and application to respiratory motion suppression. In ISBI - International Symposium on Biomedical Imaging, Proceedings of the 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, United States, pages 792-795, April 2013. IEEE.
    @inproceedings{breuilly:hal-00799368,
    TITLE = {{Image-based motion detection in 4D images and application to respiratory motion suppression}},
    AUTHOR = {Breuilly, Marine and Malandain, Gr{\'e}goire and Ayache, Nicholas and Guglielmi, Julien and Pourcher, Thierry and Franken, Philippe R. and Darcourt, Jacques},
    url-hal= {https://hal.inria.fr/hal-00799368},
    BOOKTITLE = {{ISBI - International Symposium on Biomedical Imaging}},
    ADDRESS = {San Francisco, United States},
    PUBLISHER = {{IEEE}},
    SERIES = {Proceedings of the 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro},
    PAGES = {792-795},
    YEAR = {2013},
    MONTH = Apr,
    DOI = {10.1109/ISBI.2013.6556597},
    PDF = {https://hal.inria.fr/hal-00799368/file/Breuilly_ISBI_13.pdf},
    HAL_ID = {hal-00799368},
    HAL_VERSION = {v1},
    
    }
    


  4. Nicolas Cordier, Bjoern Menze, Hervé Delingette, and Nicholas Ayache. Patch-based Segmentation of Brain Tissues. In Bjoern Menze, Mauricio Reyes, Andras Jakab, Elisabeth Gerstner, Justin Kirby, and Keyvan Farahani, editors, MICCAI Challenge on Multimodal Brain Tumor Segmentation, Proceedings of the MICCAI Challenge on Multimodal Brain Tumor Image Segmentation (BRATS) 2013, Nagoya, Japan, pages 6 - 17, September 2013. IEEE.
    @inproceedings{cordier:hal-00917084,
    TITLE = {{Patch-based Segmentation of Brain Tissues}},
    AUTHOR = {Cordier, Nicolas and Menze, Bjoern and Delingette, Herv{\'e} and Ayache, Nicholas},
    url-hal= {https://hal.inria.fr/hal-00917084},
    BOOKTITLE = {{MICCAI Challenge on Multimodal Brain Tumor Segmentation}},
    ADDRESS = {Nagoya, Japan},
    EDITOR = {Bjoern Menze and Mauricio Reyes and Andras Jakab and Elisabeth Gerstner and Justin Kirby and Keyvan Farahani},
    PUBLISHER = {{IEEE}},
    SERIES = {Proceedings of the MICCAI Challenge on Multimodal Brain Tumor Image Segmentation (BRATS) 2013},
    PAGES = {6 - 17},
    YEAR = {2013},
    MONTH = Sep,
    PDF = {https://hal.inria.fr/hal-00917084/file/Cordier-MICCAI-2013-Challenge.pdf},
    HAL_ID = {hal-00917084},
    HAL_VERSION = {v1},
    
    }
    


  5. Florian Dittmann, Bjoern Menze, Ender Konukoglu, and Jan Unkelbach. Use of Diffusion Tensor Images in Glioma Growth Modeling for Radiotherapy Target Delineation. In Multimodal Brain Image Analysis, volume 8159 of Lecture Notes in Computer Scienc, Nagoya, Japan, pages 63-73, September 2013.
    @inproceedings{dittmann:hal-00912667,
    TITLE = {{Use of Diffusion Tensor Images in Glioma Growth Modeling for Radiotherapy Target Delineation}},
    AUTHOR = {Dittmann, Florian and Menze, Bjoern and Konukoglu, Ender and Unkelbach, Jan},
    url-hal= {https://hal.inria.fr/hal-00912667},
    BOOKTITLE = {{Multimodal Brain Image Analysis}},
    ADDRESS = {Nagoya, Japan},
    SERIES = {Lecture Notes in Computer Scienc},
    VOLUME = {8159},
    PAGES = {63-73},
    YEAR = {2013},
    MONTH = Sep,
    DOI = {10.1007/978-3-319-02126-3\_7},
    PDF = {https://hal.inria.fr/hal-00912667/file/MBIA-Florian-13.pdf},
    HAL_ID = {hal-00912667},
    HAL_VERSION = {v1},
    
    }
    


  6. Ezequiel Geremia, Bjoern H. Menze, and Nicholas Ayache. Spatially Adaptive Random Forest. In 2013 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, CA, United States, pages 1332-35, 2013. IEEE.
    @inproceedings{geremia:hal-00840035,
    TITLE = {{Spatially Adaptive Random Forest}},
    AUTHOR = {Geremia, Ezequiel and Menze, Bjoern H. and Ayache, Nicholas},
    url-hal= {https://hal.inria.fr/hal-00840035},
    BOOKTITLE = {{2013 IEEE International Symposium on Biomedical Imaging: From Nano to Macro}},
    ADDRESS = {San Francisco, CA, United States},
    PUBLISHER = {{IEEE}},
    PAGES = {1332-35},
    YEAR = {2013},
    DOI = {10.1109/ISBI.2013.6556781},
    PDF = {https://hal.inria.fr/hal-00840035/file/Geremia_ISBI_2013.pdf},
    HAL_ID = {hal-00840035},
    HAL_VERSION = {v1},
    
    }
    


  7. Pietro Gori, Olivier Colliot, Yulia Worbe, Linda Marrakchi-Kacem, Sophie Lecomte, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, and Stanley Durrleman. Bayesian Atlas Estimation for the Variability Analysis of Shape Complexes. In MICCAI 2013 : Medical Image Computing and Computer Assisted Intervention, Nagoya, Japan, pages 267-274, September 2013.
    @inproceedings{gori:hal-01188791,
    TITLE = {{Bayesian Atlas Estimation for the Variability Analysis of Shape Complexes}},
    AUTHOR = {Gori, Pietro and Colliot, Olivier and Worbe, Yulia and Marrakchi-Kacem, Linda and Lecomte, Sophie and Poupon, Cyril and Hartmann, Andreas and Ayache, Nicholas and Durrleman, Stanley},
    url-hal= {https://hal.archives-ouvertes.fr/hal-01188791},
    BOOKTITLE = {{MICCAI 2013 : Medical Image Computing and Computer Assisted Intervention}},
    ADDRESS = {Nagoya, Japan},
    PAGES = {267-274},
    YEAR = {2013},
    MONTH = Sep,
    DOI = {10.1007/978-3-642-40811-3\_34},
    PDF = {https://hal.archives-ouvertes.fr/hal-01188791/file/MICCAI2013_GORI.pdf},
    HAL_ID = {hal-01188791},
    HAL_VERSION = {v1},
    
    }
    


  8. Pietro Gori, Olivier Colliot, Yulia Worbe, Linda Marrakchi-Kacem, Sophie Lecomte, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, and Stanley Durrleman. Towards joint morphometry of white matter tracts and gray matter surfaces. In Human Brain Mapping, Seattle, United States, 2013. Note: Organization for Human Brain Mapping 2013.
    @inproceedings{gori:hal-00816138,
    TITLE = {{Towards joint morphometry of white matter tracts and gray matter surfaces}},
    AUTHOR = {Gori, Pietro and Colliot, Olivier and Worbe, Yulia and Marrakchi-Kacem, Linda and Lecomte, Sophie and Poupon, Cyril and Hartmann, Andreas and Ayache, Nicholas and Durrleman, Stanley},
    url-hal= {https://hal.inria.fr/hal-00816138},
    NOTE = {Organization for Human Brain Mapping 2013},
    BOOKTITLE = {{Human Brain Mapping}},
    ADDRESS = {Seattle, United States},
    YEAR = {2013},
    PDF = {https://hal.inria.fr/hal-00816138/file/HBM_2013.pdf},
    HAL_ID = {hal-00816138},
    HAL_VERSION = {v1},
    
    }
    


  9. Vikash Gupta, Nicholas Ayache, and Xavier Pennec. Improving DTI Resolution from a Single Clinical Acquisition: A Statistical Approach using Spatial Prior. In Kensaku Mori, Ichiro Sakuma, Yoshinobu Sato, Christian Barillot, and Nassir Navab, editors, Proceedings of Medical Image Computing and Computer Assisted Intervention 2013 (MICCAI), volume 8151 of Lecture Notes in Computer Science - LNCS, Nagoya, Japan, pages 477-484, September 2013. Springer. Keyword(s): DTI, Super-resolution, Partial volume effect, Diffusion Tensor Imaging, Clinical Medical Imaging.
    @inproceedings{gupta:hal-00845927,
    TITLE = {{Improving DTI Resolution from a Single Clinical Acquisition: A Statistical Approach using Spatial Prior}},
    AUTHOR = {Gupta, Vikash and Ayache, Nicholas and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-00845927},
    BOOKTITLE = {{Proceedings of Medical Image Computing and Computer Assisted Intervention 2013 (MICCAI)}},
    ADDRESS = {Nagoya, Japan},
    EDITOR = {Kensaku Mori and Ichiro Sakuma and Yoshinobu Sato and Christian Barillot and Nassir Navab},
    PUBLISHER = {{Springer}},
    SERIES = {Lecture Notes in Computer Science - LNCS},
    VOLUME = {8151},
    PAGES = {477-484},
    YEAR = {2013},
    MONTH = Sep,
    DOI = {10.1007/978-3-642-40760-4\_60},
    KEYWORDS = {DTI ; Super-resolution ; Partial volume effect ; Diffusion Tensor Imaging ; Clinical Medical Imaging},
    PDF = {https://hal.inria.fr/hal-00845927/file/paper504.pdf},
    HAL_ID = {hal-00845927},
    HAL_VERSION = {v1},
    
    }
    


  10. Marco Lorenzi, Martina Bochetta, Nicholas Ayache, Xavier Pennec, and Giovanni B. Frisoni. Conversion to MCI in healthy individuals with abnormal CSF Ab42 levels is associated with specific longitudinal morphological changes. In Alzheimer's Association International Conference 2013, volume 9, issue 4 (supplement) of Alzheimer's & Dementia: The Journal of the Alzheimer's Association, Boston, United States, pages P596, July 2013.
    @inproceedings{lorenzi:hal-00874722,
    TITLE = {{Conversion to MCI in healthy individuals with abnormal CSF Ab42 levels is associated with specific longitudinal morphological changes}},
    AUTHOR = {Lorenzi, Marco and Bochetta, Martina and Ayache, Nicholas and Pennec, Xavier and Frisoni, Giovanni B.},
    url-hal= {https://hal.inria.fr/hal-00874722},
    BOOKTITLE = {{Alzheimer's Association International Conference 2013}},
    ADDRESS = {Boston, United States},
    SERIES = {Alzheimer's \& Dementia: The Journal of the Alzheimer's Association},
    VOLUME = {9, issue 4 (supplement)},
    PAGES = {P596},
    YEAR = {2013},
    MONTH = Jul,
    DOI = {10.1016/j.jalz.2013.05.1189},
    HAL_ID = {hal-00874722},
    HAL_VERSION = {v1},
    
    }
    


  11. Marco Lorenzi, Bjoern H. Menze, Marc Niethammer, Nicholas Ayache, and Xavier Pennec. Sparse Scale-Space Decomposition of Volume Changes in Deformations Fields. In Kensaku Mori, Ichiro Sakuma, Yoshinobu Sato, Christian Barillot, and Nassir Navab, editors, Medical Image Computing and Computer Aided Intervention (MICCAI), volume 8150 of Lecture Notes in Computer Science - LNCS, Nagoya, Japan, pages 328-335, September 2013. Springer. Keyword(s): Scale-space decomposition, non-rigid registration, longitudinal analysis, stationary velocity fields.
    @inproceedings{lorenzi:hal-00845758,
    TITLE = {{Sparse Scale-Space Decomposition of Volume Changes in Deformations Fields}},
    AUTHOR = {Lorenzi, Marco and Menze, Bjoern H. and Niethammer, Marc and Ayache, Nicholas and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-00845758},
    BOOKTITLE = {{Medical Image Computing and Computer Aided Intervention (MICCAI)}},
    ADDRESS = {Nagoya, Japan},
    EDITOR = {Kensaku Mori and Ichiro Sakuma and Yoshinobu Sato and Christian Barillot and Nassir Navab},
    PUBLISHER = {{Springer}},
    SERIES = {Lecture Notes in Computer Science - LNCS},
    VOLUME = {8150},
    PAGES = {328-335},
    YEAR = {2013},
    MONTH = Sep,
    DOI = {10.1007/978-3-642-40763-5\_41},
    KEYWORDS = {Scale-space decomposition ; non-rigid registration ; longitudinal analysis ; stationary velocity fields},
    PDF = {https://hal.inria.fr/hal-00845758/file/Submission562.pdf},
    HAL_ID = {hal-00845758},
    HAL_VERSION = {v1},
    
    }
    


  12. Marco Lorenzi and Xavier Pennec. Parallel Transport with Pole Ladder: Application to Deformations of time Series of Images. In Nielsen, Frank, Barbaresco, and F., editors, GSI2013 - Geometric Science of Information, volume 8085 of Lecture Notes in Computer Science - LNCS, Paris, France, pages 68-75, August 2013. Springer.
    @inproceedings{lorenzi:hal-00819898,
    TITLE = {{Parallel Transport with Pole Ladder: Application to Deformations of time Series of Images}},
    AUTHOR = {Lorenzi, Marco and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-00819898},
    BOOKTITLE = {{GSI2013 - Geometric Science of Information}},
    ADDRESS = {Paris, France},
    EDITOR = {Nielsen and Frank and Barbaresco and F.},
    PUBLISHER = {{Springer}},
    SERIES = {Lecture Notes in Computer Science - LNCS},
    VOLUME = {8085},
    PAGES = {68-75},
    YEAR = {2013},
    MONTH = Aug,
    DOI = {10.1007/978-3-642-40020-9\_6},
    PDF = {https://hal.inria.fr/hal-00819898/file/0069_MarcoLorenzi.pdf},
    HAL_ID = {hal-00819898},
    HAL_VERSION = {v1},
    
    }
    


  13. Jan Margeta, Kristin Mcleod, Antonio Criminisi, and Nicholas Ayache. Decision forests for segmentation of left atrium from 3D MRI. In 4th International Workshop on Statistical Atlases and Computational Models of the Heart, Nagoya, Japan, September 2013.
    @inproceedings{margeta:hal-00860580,
    TITLE = {{Decision forests for segmentation of left atrium from 3D MRI}},
    AUTHOR = {Margeta, Jan and Mcleod, Kristin and Criminisi, Antonio and Ayache, Nicholas},
    url-hal= {https://hal.inria.fr/hal-00860580},
    BOOKTITLE = {{4th International Workshop on Statistical Atlases and Computational Models of the Heart}},
    ADDRESS = {Nagoya, Japan},
    YEAR = {2013},
    MONTH = Sep,
    HAL_ID = {hal-00860580},
    HAL_VERSION = {v1},
    
    }
    


  14. Kristin Mcleod, Christof Seiler, Maxime Sermesant, and Xavier Pennec. Spatio-Temporal Dimension Reduction of Cardiac Motion for Group-Wise Analysis and Statistical Testing. In Kensaku Mori, Ichiro Sakuma, Yoshinobu Sato, Christian Barillot, and Nassir Navab, editors, MICCAI - Medical Image Computing and Computer Assisted Intervention - 2013, volume 8150 of Lecture Notes in Computer Science, Nagoya, Japan, pages 501-508, 2013. Springer, Heidelberg.
    @inproceedings{mcleod:hal-00840041,
    TITLE = {{Spatio-Temporal Dimension Reduction of Cardiac Motion for Group-Wise Analysis and Statistical Testing}},
    AUTHOR = {Mcleod, Kristin and Seiler, Christof and Sermesant, Maxime and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-00840041},
    BOOKTITLE = {{MICCAI - Medical Image Computing and Computer Assisted Intervention - 2013}},
    ADDRESS = {Nagoya, Japan},
    EDITOR = {Kensaku Mori and Ichiro Sakuma and Yoshinobu Sato and Christian Barillot and Nassir Navab},
    PUBLISHER = {{Springer, Heidelberg}},
    SERIES = {Lecture Notes in Computer Science},
    VOLUME = {8150},
    PAGES = {501-508},
    YEAR = {2013},
    DOI = {10.1007/978-3-642-40763-5\_62},
    PDF = {https://hal.inria.fr/hal-00840041/file/MICCAI_mcleod_2013.pdf},
    HAL_ID = {hal-00840041},
    HAL_VERSION = {v1},
    
    }
    


  15. Kristin Mcleod, Christof Seiler, Nicolas Toussaint, Maxime Sermesant, and Xavier Pennec. Regional Analysis of Left Ventricle Function using a Cardiac-Specific Polyaffine Motion Model. In Sébastien Ourselin, Daniel Rueckert, and Nicolas Smith, editors, Functional Imaging and Modeling of the Heart 2013 (FIMH), volume 7945 of Lecture Notes in Computer Science, London, United Kingdom, pages 483-490, June 2013. Springer.
    @inproceedings{mcleod:hal-00840042,
    TITLE = {{Regional Analysis of Left Ventricle Function using a Cardiac-Specific Polyaffine Motion Model}},
    AUTHOR = {Mcleod, Kristin and Seiler, Christof and Toussaint, Nicolas and Sermesant, Maxime and Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-00840042},
    BOOKTITLE = {{Functional Imaging and Modeling of the Heart 2013 (FIMH)}},
    ADDRESS = {London, United Kingdom},
    EDITOR = {S{\'e}bastien Ourselin and Daniel Rueckert and Nicolas Smith},
    PUBLISHER = {{Springer}},
    SERIES = {Lecture Notes in Computer Science},
    VOLUME = {7945},
    PAGES = {483-490},
    YEAR = {2013},
    MONTH = Jun,
    DOI = {10.1007/978-3-642-38899-6\_57},
    PDF = {https://hal.inria.fr/hal-00840042/file/PolyAffineHeartRegionalAnalysis.pdf},
    HAL_ID = {hal-00840042},
    HAL_VERSION = {v1},
    
    }
    


  16. Xavier Pennec. Bi-invariant means on Lie groups with Cartan-Schouten connections. In Nielsen, Frank, Barbaresco, and F., editors, Geometric Science of Information (GSI 2013), volume 8085 of Lecture Notes in Computer Science - LNCS, Paris, France, pages 59-67, August 2013. Springer.
    @inproceedings{pennec:hal-00846373,
    TITLE = {{Bi-invariant means on Lie groups with Cartan-Schouten connections}},
    AUTHOR = {Pennec, Xavier},
    url-hal= {https://hal.inria.fr/hal-00846373},
    BOOKTITLE = {{Geometric Science of Information (GSI 2013)}},
    ADDRESS = {Paris, France},
    EDITOR = {Nielsen and Frank and Barbaresco and F.},
    PUBLISHER = {{Springer}},
    SERIES = {Lecture Notes in Computer Science - LNCS},
    VOLUME = {8085},
    PAGES = {59-67},
    YEAR = {2013},
    MONTH = Aug,
    DOI = {10.1007/978-3-642-40020-9\_5},
    PDF = {https://hal.inria.fr/hal-00846373/file/GSI13_CartanConnections.pdf},
    HAL_ID = {hal-00846373},
    HAL_VERSION = {v1},
    
    }
    


  17. Christof Seiler, Xavier Pennec, and Susan Holmes. Random Spatial Structure of Geometric Deformations and Bayesian Nonparametrics. In GSI - Geometric Science of Information - 2013, volume 8085 of Lecture Notes in Computer Science - LNCS, Paris, France, pages 120-127, August 2013. Springer.
    @inproceedings{seiler:hal-00847185,
    TITLE = {{Random Spatial Structure of Geometric Deformations and Bayesian Nonparametrics}},
    AUTHOR = {Seiler, Christof and Pennec, Xavier and Holmes, Susan},
    url-hal= {https://hal.inria.fr/hal-00847185},
    BOOKTITLE = {{GSI - Geometric Science of Information - 2013}},
    ADDRESS = {Paris, France},
    PUBLISHER = {{Springer}},
    SERIES = {Lecture Notes in Computer Science - LNCS},
    VOLUME = {8085},
    PAGES = {120-127},
    YEAR = {2013},
    MONTH = Aug,
    DOI = {10.1007/978-3-642-40020-9\_12},
    PDF = {https://hal.inria.fr/hal-00847185/file/BayesianNonparametricsGeometricDeformationsSeiler2013.pdf},
    HAL_ID = {hal-00847185},
    HAL_VERSION = {v1},
    
    }
    


  18. Oudom Somphone, Mathieu De Craene, Roberto Ardon, Benoit Mory, Pascal Allain, Hang Gao, Jan D'Hooge, Stéphanie Marchesseau, Maxime Sermesant, and Eric Saloux. Fast Myocardial Motion and Strain Estimation in 3D Cardiac Ultrasound with Sparse Demons. In International Symposium on Biomedical Imaging (ISBI), 2013, San Francisco, United States, pages 1182-1185, April 2013. IEEE.
    @inproceedings{somphone:hal-00840038,
    TITLE = {{Fast Myocardial Motion and Strain Estimation in 3D Cardiac Ultrasound with Sparse Demons}},
    AUTHOR = {Somphone, Oudom and De Craene, Mathieu and Ardon, Roberto and Mory, Benoit and Allain, Pascal and Gao, Hang and D'Hooge, Jan and Marchesseau, St{\'e}phanie and Sermesant, Maxime and Saloux, Eric},
    url-hal= {https://hal.inria.fr/hal-00840038},
    BOOKTITLE = {{International Symposium on Biomedical Imaging (ISBI), 2013}},
    ADDRESS = {San Francisco, United States},
    PUBLISHER = {{IEEE}},
    PAGES = {1182-1185},
    YEAR = {2013},
    MONTH = Apr,
    DOI = {10.1109/ISBI.2013.6556691},
    HAL_ID = {hal-00840038},
    HAL_VERSION = {v1},
    
    }
    


  19. Erin Stretton, Ezequiel Geremia, Bjoern H. Menze, Hervé Delingette, and Nicholas Ayache. Importance of patient DTI's to accurately model glioma growth using the reaction diffusion equation. In 2013 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, CA, United States, pages 1130-32, 2013. IEEE.
    @inproceedings{stretton:hal-00840036,
    TITLE = {{Importance of patient DTI's to accurately model glioma growth using the reaction diffusion equation}},
    AUTHOR = {Stretton, Erin and Geremia, Ezequiel and Menze, Bjoern H. and Delingette, Herv{\'e} and Ayache, Nicholas},
    url-hal= {https://hal.inria.fr/hal-00840036},
    BOOKTITLE = {{2013 IEEE International Symposium on Biomedical Imaging: From Nano to Macro}},
    ADDRESS = {San Francisco, CA, United States},
    PUBLISHER = {{IEEE}},
    PAGES = {1130-32},
    YEAR = {2013},
    PDF = {https://hal.inria.fr/hal-00840036/file/Stretton_ISBI_2013.pdf},
    HAL_ID = {hal-00840036},
    HAL_VERSION = {v1},
    
    }
    


  20. Yuliya Tarabalka, Guillaume Charpiat, Ludovic Brucker, and Bjoern H. Menze. Enforcing Monotonous Shape Growth or Shrinkage in Video Segmentation. In BMVC - British Machine Vision Conference, Bristol, United Kingdom, September 2013.
    @inproceedings{tarabalka:hal-00856634,
    TITLE = {{Enforcing Monotonous Shape Growth or Shrinkage in Video Segmentation}},
    AUTHOR = {Tarabalka, Yuliya and Charpiat, Guillaume and Brucker, Ludovic and Menze, Bjoern H.},
    url-hal= {https://hal.inria.fr/hal-00856634},
    BOOKTITLE = {{BMVC - British Machine Vision Conference}},
    ADDRESS = {Bristol, United Kingdom},
    YEAR = {2013},
    MONTH = Sep,
    PDF = {https://hal.inria.fr/hal-00856634/file/2013_BMVC_TarabalkaEtAl.pdf},
    HAL_ID = {hal-00856634},
    HAL_VERSION = {v1},
    
    }
    


  21. Birkan Tunç, Alex Smith, Demian Wasserman, Xavier Pennec, William M. Wells, Ragini Verma, and Kilian M. Pohl. Multinomial Probabilistic Fiber Representation for Connectivity Driven Clustering. In Gee, J. C., Joshi, Sarang, Pohl, Kilian M., Wells, William M., Zollei, and L., editors, IPMI 2013 - Information Processing in Medical Imaging, volume 7917 of LNCS, Asilomar, United States, pages 730-741, June 2013. Springer.
    @inproceedings{tunc:hal-00846431,
    TITLE = {{Multinomial Probabilistic Fiber Representation for Connectivity Driven Clustering}},
    AUTHOR = {Tun{\c c}, Birkan and Smith, Alex and Wasserman, Demian and Pennec, Xavier and Wells, William M. and Verma, Ragini and Pohl, Kilian M.},
    url-hal= {https://hal.inria.fr/hal-00846431},
    BOOKTITLE = {{IPMI 2013 - Information Processing in Medical Imaging}},
    ADDRESS = {Asilomar, United States},
    EDITOR = {Gee and J. C. and Joshi and Sarang and Pohl and Kilian M. and Wells and William M. and Zollei and L.},
    PUBLISHER = {{Springer}},
    SERIES = {LNCS},
    VOLUME = {7917},
    PAGES = {730-741},
    YEAR = {2013},
    MONTH = Jun,
    DOI = {10.1007/978-3-642-38868-2\_61},
    PDF = {https://hal.inria.fr/hal-00846431/file/tunc-ipmi-2013.pdf},
    HAL_ID = {hal-00846431},
    HAL_VERSION = {v1},
    
    }
    


  22. Anant S. Vemuri, Stéphane Nicolau, Nicholas Ayache, Jacques Marescaux, and Luc Soler. Inter-Operative Trajectory Registration for Endoluminal Video Synchronization: Application to Biopsy Site Re-localization. In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 8149 of Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, Nagoya, Japan, pages 372-379, September 2013. Springer. Keyword(s): Computer assisted surgery, Surgical Navigation, Biopsy relocalization.
    @inproceedings{vemuri:hal-00841712,
    TITLE = {{Inter-Operative Trajectory Registration for Endoluminal Video Synchronization: Application to Biopsy Site Re-localization}},
    AUTHOR = {Vemuri, Anant S. and Nicolau, St{\'e}phane and Ayache, Nicholas and Marescaux, Jacques and Soler, Luc},
    url-hal= {https://hal.inria.fr/hal-00841712},
    BOOKTITLE = {{International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)}},
    ADDRESS = {Nagoya, Japan},
    PUBLISHER = {{Springer}},
    SERIES = {Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013},
    VOLUME = {8149},
    PAGES = {372-379},
    YEAR = {2013},
    MONTH = Sep,
    DOI = {10.1007/978-3-642-40811-3\_47},
    KEYWORDS = {Computer assisted surgery ; Surgical Navigation ; Biopsy relocalization},
    PDF = {https://hal.inria.fr/hal-00841712/file/anant_miccai13.pdf},
    HAL_ID = {hal-00841712},
    HAL_VERSION = {v1},
    
    }
    


Internal reports

  1. Hugo Talbot, Federico Spadoni, Maxime Sermesant, Nicholas Ayache, and Hervé Delingette. Deliverable D10.4.2. Research Report, January 2013.
    @techreport{talbot:hal-00918211,
    TITLE = {{Deliverable D10.4.2}},
    AUTHOR = {Talbot, Hugo and Spadoni, Federico and Sermesant, Maxime and Ayache, Nicholas and Delingette, Herv{\'e}},
    url-hal= {https://hal.inria.fr/hal-00918211},
    TYPE = {Research Report},
    PAGES = {22},
    YEAR = {2013},
    MONTH = Jan,
    PDF = {https://hal.inria.fr/hal-00918211/file/euHeart_Deliverable_10-4-2.pdf},
    HAL_ID = {hal-00918211},
    HAL_VERSION = {v1},
    
    }
    


Miscellaneous

  1. Nina Miolane. Defining a mean on Lie group. Master's thesis, Imperial College London, September 2013. Keyword(s): Lie group.
    @mastersthesis{miolane:hal-00938320,
    TITLE = {{Defining a mean on Lie group}},
    AUTHOR = {Miolane, Nina},
    url-hal= {https://hal.inria.fr/hal-00938320},
    SCHOOL = {{Imperial College London}},
    YEAR = {2013},
    MONTH = Sep,
    KEYWORDS = {Lie group},
    PDF = {https://hal.inria.fr/hal-00938320/file/MiolaneMasterThesis.pdf},
    HAL_ID = {hal-00938320},
    HAL_VERSION = {v1},
    
    }
    


  2. Hervé Delingette, Polina Golland, and Kensaku Mori. Editorial for the MEDIA special issue on MICCAI 2012, 2013. Note: Editorial of the Medical Image Analysis journal 17 (2013) 711.
    @misc{delingette:hal-00848523,
    TITLE = {{Editorial for the MEDIA special issue on MICCAI 2012}},
    AUTHOR = {Delingette, Herv{\'e} and Golland, Polina and Mori, Kensaku},
    url-hal= {https://hal.inria.fr/hal-00848523},
    NOTE = {Editorial of the Medical Image Analysis journal 17 (2013) 711},
    PUBLISHER = {{Elsevier}},
    VOLUME = {17},
    PAGES = {711},
    YEAR = {2013},
    PDF = {https://hal.inria.fr/hal-00848523/file/Editorial_for_the_MEDIA_Special_Issue_on_MICCAI_2012-final.pdf},
    HAL_ID = {hal-00848523},
    HAL_VERSION = {v1},
    
    }
    


  3. Xavier Pennec, Sarang Joshi, and Mads Nielsen. Mathematical Methods for Medical Imaging, August 2013. Note: Editorial of the special issue following the Mathematical Foundations of Computational Anatomy (MFCA) 2011 workshop. International Journal of Computer Vision: Volume 105, Issue 2 (2013), Page 109-110.
    @misc{pennec:hal-00858908,
    TITLE = {{Mathematical Methods for Medical Imaging}},
    AUTHOR = {Pennec, Xavier and Joshi, Sarang and Nielsen, Mads},
    url-hal= {https://hal.inria.fr/hal-00858908},
    NOTE = {Editorial of the special issue following the Mathematical Foundations of Computational Anatomy (MFCA) 2011 workshop. International Journal of Computer Vision: Volume 105, Issue 2 (2013), Page 109-110},
    YEAR = {2013},
    MONTH = Aug,
    DOI = {10.1007/s11263-013-0650-z},
    HAL_ID = {hal-00858908},
    HAL_VERSION = {v1},
    
    }
    



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