Publications of year 2006

1. Hervé Delingette and Alejandro Frangi, editors. Proceedings of the MICCAI Workshop - From Statistical Atlases to Personalized Models: Understanding Complex Diseases in Populations and Individuals, 2006. [bibtex-entry]



2. Xavier Pennec and Sarang Joshi, editors. Proceedings of the First International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability, Copenhagen, Denmark, October 2006. [bibtex-entry]

1. Vincent Arsigny. Processing Data in Lie Groups: An Algebraic Approach. Application to Non-Linear Registration and Diffusion Tensor MRI. Thèse de sciences (PhD Thesis), École polytechnique, November 2006. Keyword(s): DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics, Polyaffine transformations, Diffeomorphisms, Non-rigid registration, Multi-affine registration, Magnetic Resonance Imaging, Bi-invariant means, Fréchet means, Statistics. [bibtex-entry]



2. Olivier Clatz. Modèles biomécaniques et physio-pathologiques pour l'analyse d'images cérébrales. Thèse de sciences, École des Mines de Paris, February 2006. [bibtex-entry]



3. Hervé Delingette. Modélisation de structures déformables. Habilitation à diriger des recherches, Université Nice Sophia-Antipolis, March 2006. [bibtex-entry]



4. Guillaume Dugas-Phocion. Segmentation d'IRM Cérébrales Multi-Séquences et Application à la Sclérose en Plaques. Thèse de sciences, École des Mines de Paris, March 2006. [bibtex-entry]



5. Grégoire Malandain. Les mesures de similarité pour le recalage des images médicales. Habilitation à diriger des recherches, Université Nice Sophia-Antipolis, March 2006. [bibtex-entry]



6. Xavier Pennec. Statistical Computing on Manifolds for Computational Anatomy. Habilitation à diriger des recherches, Université Nice Sophia-Antipolis, December 2006. Keyword(s): Tensors, regularization, PDE, geometry, Riemannian geometry, Registration, statistics, manifolds. [bibtex-entry]

1. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Log-Euclidean Metrics for Fast and Simple Calculus on Diffusion Tensors. Magnetic Resonance in Medicine, 56(2):411-421, August 2006. Keyword(s): DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics. [bibtex-entry]



2. C Bensa, C Bertogliati, S Chanalet, G Malandain, P Bedoucha, and C Lebrun. Early detection of cognitive impairment in relapsing-remitting multiple sclerosis: functional-anatomical correlations and longitudinal follow-up. Revue Neurologique, 162(12):1221-31, December 2006. Note: [In French]. [Abstract] [bibtex-entry]



3. Christophe Blondel, Grégoire Malandain, Régis Vaillant, and Nicholas Ayache. Reconstruction of Coronary Arteries from a Single Rotational X-Ray Projection Sequence. IEEE Transactions on Medical Imaging, 25(5):653-663, May 2006. Keyword(s): Angiocardiography, Coronarography, Image Motion Analysis, Image Reconstruction, Tomography. [Abstract] [bibtex-entry]



4. Francis Cassot, Frederic Lauwers, Céline Fouard, Steffen Prohaska, and Valerie Lauwers-Cances. A novel three-dimensional computer-assisted method for a quantitative study of microvascular networks of the human cerebral cortex. Microcirculation, 13(1):1-18, January 2006. [Abstract] [bibtex-entry]



5. Olivier Clatz, Emmanuel Mandonnet, Stéphane Chanalet, Christine Lebrun, Ender Konukoglu, Hervé Delingette, Nicholas Ayache, and Pierre-Yves Bondiau. Modèles Biomathématiques de Croissance Des Gliomes : Recherche en Informatique et Perspectives en Neuro-oncologie. Neurologies, 9(93):665-667, 2006. [bibtex-entry]



6. O. Colliot, T. Mansi, N. Bernasconi, V. Naessens, D. Klironomos, and A. Bernasconi. Segmentation of focal cortical dysplasia lesions on MRI using level set evolution. NeuroImage, 32(4):1621-1630, October 2006. [Abstract] [bibtex-entry]



7. Hervé Delingette and Nicholas Ayache. La simulation de Chirurgie Hépatique. Pour la science, 52(52):106-109, July 2006. Keyword(s): Simulation. [bibtex-entry]



8. Hervé Delingette, Xavier Pennec, Luc Soler, Jacques Marescaux, and Nicholas Ayache. Computational Models for Image Guided, Robot-Assisted and Simulated Medical Interventions. Proceedings of the IEEE, 94(9):1678- 1688, September 2006. [bibtex-entry]



9. Denis Ducreux, Frédéric Dhermain, and Pierre Fillard. [Functional MRI in brain tumours]. Cancer radiothérapie, 10(6-7):330-3, November 2006. Note: [In French]. Keyword(s): Brain, anatomy & histology, Brain Mapping, Brain Neoplasms, pathology, Humans, Magnetic Resonance Imaging, methods, Prognosis. [Abstract] [bibtex-entry]



10. Denis Ducreux, Jean-Francois Lepeintre, Pierre Fillard, C. Loureiro, Marc Tadié, and Pierre Lasjaunias. MR diffusion tensor imaging and fiber tracking in 5 spinal cord astrocytomas. AJNR. American journal of neuroradiology, 27(1):214-6, January 2006. Keyword(s): Adult, Astrocytoma, diagnosis, Diffusion Magnetic Resonance Imaging, Female, Humans, Image Processing Computer-Assisted, Imaging Three-Dimensional, Male, Nerve Fibers, pathology, Spinal Cord, pathology, Spinal Cord Neoplasms, diagnosis. [Abstract] [bibtex-entry]



11. Céline Fouard, Grégoire Malandain, Steffen Prohaska, and Malte Westerhoff. Blockwise Processing Applied to Brain Microvascular Network Study. IEEE Transactions on Medical Imaging, 25(10):1319-1328, 2006. [Abstract] [bibtex-entry]



12. M. Liberatore, C. Denier, Pierre Fillard, M.C. Petit-Lacour, F. Benoudiba, Pierre Lasjaunias, and Denis Ducreux. [Diffusion tensor imaging and tractography of central pontine myelinolysis]. J Neuroradiol, 33(3):189-193, June 2006. Note: [In French]. Keyword(s): Adult, Anorexia, complications, Diffusion Magnetic Resonance Imaging, Female, Humans, Myelinolysis Central Pontine, diagnosis, Pyramidal Tracts, pathology. [Abstract] [bibtex-entry]



13. M.G. Linguraru, N. Ayache, E. Bardinet, M.A. González Ballester, D. Galanaud, S. Haïk, B.A. Faucheux, J.J. Hauw, P. Cozzone, D. Dormont, and J.P. Brandel. Differentiation of sCJD and vCJD Forms by Automated Analysis of Basal Ganglia Intensity Distribution in Multisequence MRI of the Brain - Definition and Evaluation of New MRI-based Ratios. IEEE Transactions on Medical Imaging, 25(8):1052-1067, 2006. [bibtex-entry]



14. M.G. Linguraru, K. Marias, R. English, and J.M. Brady. A Biologically Inspired Algorithm for Microcalcification Cluster Detection. Medical Image Analysis, 10(6), 2006. [bibtex-entry]



15. Valérie Moreau-Villéger, Hervé Delingette, Maxime Sermesant, Hiroshi Ashikaga, Elliot McVeigh, and Nicholas Ayache. Building Maps of Local Apparent Conductivity of the Epicardium with a 2D Electrophysiological Model of the Heart. IEEE Transactions on Bio-Medical Engineering, 53(8):1457-1466, August 2006. [bibtex-entry]



16. Xavier Pennec. Intrinsic Statistics on Riemannian Manifolds: Basic Tools for Geometric Measurements. Journal of Mathematical Imaging and Vision, 25(1):127-154, July 2006. Note: A preliminary appeared as INRIA RR-5093, January 2004. Keyword(s): Fréchet means, Statistics, Lie groups, Riemannian geometry. [bibtex-entry]



17. Xavier Pennec, Pierre Fillard, and Nicholas Ayache. A Riemannian Framework for Tensor Computing. International Journal of Computer Vision, 66(1):41-66, January 2006. Note: A preliminary version appeared as INRIA Research Report 5255, July 2004. Keyword(s): Tensors, regularization, PDE, geometry, Riemannian geometry. [Abstract] [bibtex-entry]



18. Alain Pitiot, Eric Bardinet, Paul M. Thompson, and Grégoire Malandain. Piecewise Affine Registration of Biological Images for Volume Reconstruction. Medical Image Analysis, 10(3):465-483, June 2006. Keyword(s): registration, clustering, reconstruction, histology, MRI. [Abstract] [bibtex-entry]



19. J Renoux, D Facon, P Fillard, I Huynh, P Lasjaunias, and D Ducreux. MR diffusion tensor imaging and fiber tracking in inflammatory diseases of the spinal cord. AJNR. American journal of neuroradiology, 27(9):1947-51, October 2006. Keyword(s): Adult, Anisotropy, Diagnosis Differential, Diffusion Magnetic Resonance Imaging, Female, Humans, Image Enhancement, Image Processing Computer-Assisted, Male, Middle Aged, Multiple Sclerosis, diagnosis, Myelitis, diagnosis, Myelitis Transverse, diagnosis, Nerve Fibers, pathology, Neurologic Examination, Prospective Studies, Reference Values, Sarcoidosis, diagnosis, Spinal Cord, pathology. [Abstract] [bibtex-entry]



20. Gilles Scarella, Olivier Clatz, Stéphane Lanteri, Grégory Beaume, Steve Oudot, Jean-Philippe Pons, Serge Piperno, Patrick Joly, and Joe Wiart. Realistic numerical modelling of human head tissue exposure to electromagnetic waves from cellular phones. Comptes Rendus de l'Académie des Sciences - Physics, 7(5):501-508, June 2006. [Abstract] [bibtex-entry]



21. Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. An Electromechanical Model of the Heart for Image Analysis and Simulation. IEEE Transactions on Medical Imaging, 25(5):612-625, 2006. [bibtex-entry]



22. Maxime Sermesant, Philippe Moireau, Oscar Camara, Jacques Sainte-Marie, Rado Andriantsimiavona, Robert Cimrman, Derek L. Hill, Dominique Chapelle, and Reza Razavi. Cardiac function estimation from MRI using a heart model and data assimilation: Advances and difficulties. Medical Image Analysis, 10(4):642-656, 2006. [bibtex-entry]



23. Arjan W Simonetti, Vedat A Elezi, Regine Farion, Gregoire Malandain, Christoph Segebarth, Chantal Remy, and Emmanuel L Barbier. A low temperature embedding and section registration strategy for 3D image reconstruction of the rat brain from autoradiographic sections. Journal of Neuroscience Methods, 158(2):242-50, December 2006. [Abstract] [bibtex-entry]



24. Tom Vercauteren, Aymeric Perchant, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy. Medical Image Analysis, 10(5):673-692, October 2006. Note: Annual Medical Image Analysis (MedIA) Best Paper Award 2006. PMID: 16887375. [bibtex-entry]

1. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. A Log-Euclidean Framework for Statistics on Diffeomorphisms. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, number 4190 of LNCS, pages 924-931, 2-4 October 2006. Keyword(s): Non-rigid registration, Lie groups, Diffeomorphisms, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]



2. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. A Log-Euclidean Polyaffine Framework for Locally Rigid or Affine Registration. In J.P.W. Pluim, B. Likar, and F.A. Gerritsen, editors, Proceedings of the Third International Workshop on Biomedical Image Registration (WBIR'06), volume 4057 of LNCS, Utrecht, The Netherlands, pages 120-127, 9 - 11 July 2006. Springer. Keyword(s): Polyaffine transformations, Diffeomorphisms, Non-rigid registration, Multi-affine registration, Lie groups, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]



3. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. Statistics on Diffeomorphisms in A Log-Euclidean Framework. In X. Pennec and S. Joshi, editors, Proc. of the International Workshop on the Mathematical Foundations of Computational Anatomy (MFCA-2006), pages 16-17, 1st of October 2006. Keyword(s): Non-rigid registration, Lie groups, Diffeomorphisms, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]



4. M. A. Audette, H. Delingette, A. Fuchs, O. Burgert, and K. Chinzei. A topologically faithful, tissue-guided, spatially varying meshing strategy for computing patient-specific head models for endoscopic pituitary surgery simulation. In Studies in health technology and informatics, Medicine Meets Virtual Reality (MMVR), pages 22-27, 2006. [bibtex-entry]



5. Nicholas Ayache, Tom Vercauteren, Grégoire Malandain, Fabien Oberrietter, Nicolas Savoire, and Aymeric Perchant. Processing and Mosaicing of Fibered Confocal Images. In MICCAI Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'06), October 2006. Note: Invited. [bibtex-entry]



6. Antoine Azar, Chenyang Xu, Xavier Pennec, and Nicholas Ayache. An interactive Intensity- and Feature-Based Non-Rigid Registration Framework for 3D Medical Images. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 824-827, April 2006. Keyword(s): Spine, variability model, Riemannian geometry. [bibtex-entry]



7. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Nicholas Ayache, and Hubert Labelle. A Novel Framework for the 3D Analysis of Spine Deformation Modes. In Research into Spinal Deformities, volume 123 of Studies in Health Technology and Informatics, pages 176-182, 2006. [bibtex-entry]



8. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Nicholas Ayache, and Hubert Labelle. Assessment of Brace Local Action on Vertebrae Relative Poses. In Research into Spinal Deformities, volume 123 of Studies in Health Technology and Informatics, pages 372-378, 2006. [bibtex-entry]



9. Jonathan Boisvert, Xavier Pennec, Nicholas Ayache, Hubert Labelle, and Farida Cheriet. 3D Anatomic Variability Assesment of the Scoliotic Spine Using Statistics on Lie Groups. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 750-753, April 2006. IEEE. Keyword(s): Spine, variability model, Riemannian geometry. [bibtex-entry]



10. Jonathan Boisvert, Xavier Pennec, Hubert Labelle, Farida Cheriet, and Nicholas Ayache. Principal Spine Shape Deformation Modes Using Riemannian Geometry and Articulated Models. In Proc of the IV Conference on Articulated Motion and Deformable Objects, Andratx, Mallorca, Spain, 11-14 July, volume 4069 of LNCS, pages 346-355, 2006. Springer. Note: AMDO best paper award 2006. [bibtex-entry]



11. Nikos Chrisochoides, Andriy Fedorov, Andriy Kot, Neculai Archip, Peter Black, Olivier Clatz, Alexandra Golby, Ron Kikinis, and Simon K. Warfield. Toward Real-Time, Image Guided Neurosurgery Using Distributed and Grid Computing. In SuperComputing06, Tampa, Florida, USA, November 2006. [bibtex-entry]



12. Desmond Chung, Mihaela Pop, Maxime Sermesant, and Graham Wright. Stereo Reconstruction of the Epicardium for Optical Fluorescence Imaging. In MICCAI Workshop on Biophotonics Imaging for Diagnostics and Treatment, pages 33-40, 2006. [bibtex-entry]



13. Olivier Clatz, Stéphane Lanteri, and Serge Piperno. Unstructured mesh solvers for the simulation of electromagnetic wave propagation and induced temperature elevation in living tissues. In 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering, 2006. [bibtex-entry]



14. O. Colliot, T. Mansi, P. Besson, N. Bernasconi, and A. Bernasconi. Improved segmentation of focal cortical dysplasia lesions on MRI using expansion towards cortical boundaries. In 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro (ISBI), pages 323-326, 2006. [Abstract] [bibtex-entry]



15. Olivier Commowick, Vincent Arsigny, Jimena Costa, Nicholas Ayache, and Grégoire Malandain. An Efficient Locally Affine Framework for the Registration of Anatomical Structures. In Proceedings of the Third IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 478-481, April 2006. Keyword(s): Non-rigid registration, Multi-affine registration, Magnetic Resonance Imaging, Polyaffine transformations, Log-Euclidean metrics, Diffeomorphisms. [bibtex-entry]



16. Olivier Commowick and Grégoire Malandain. Evaluation of Atlas Construction Strategies in the Context of Radiotherapy Planning. In Proceedings of the SA2PM Workshop (From Statistical Atlases to Personalized Models), Copenhagen, October 2006. Note: Held in conjunction with MICCAI 2006. Keyword(s): Non-rigid registration, Atlas, Head And Neck. [bibtex-entry]



17. Pierre Fillard, Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Clinical DT-MRI estimation, smoothing and fiber tracking with log-Euclidean metrics. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 786-789, April 2006. Keyword(s): DT-MRI, tensor estimation, Riemannian geometry, Log-Euclidean metrics. [bibtex-entry]



18. J. Freund, D. Comaniciu, Y. Ioannis, P. Liu, R. McClatchey, E. Moley-Fletcher, X. Pennec, G. Pongiglione, and X.S. Zhou. Health-e-Child: An Integrated Biomedical Platform for Grid-Based Pediatrics. In Proc of Health-Grid 2006, volume 120 of Studies in Health Technology and Informatics, Valancia, Spain, pages 259-270, 2006. [bibtex-entry]



19. Tristan Glatard, David Emsellem, and Johan Montagnat. Generic web service wrapper for efficient embedding of legacy codes in service-based workflows. In Grid-Enabling Legacy Applications and Supporting End Users Workshop (GELA'06), Paris, France, June 19-23, 2006. [bibtex-entry]



20. Tristan Glatard, Johan Montagnat, and Xavier Pennec. An experimental comparison of Grid5000 clusters and the EGEE grid. In Proc of the Workshop on Experimental Grid testbeds for the assessment of large-scale distributed applications and tools (EXPGRID'06), Paris, France, June 19-23, 2006. [bibtex-entry]



21. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Efficient services composition for grid-enabled data-intensive applications. In IEEE, editor, Proceedings of the IEEE International Symposium on High Performance Distributed Computing (HPDC'06), Paris, France, June 19, pages 333-334, June 2006. IEEE. [bibtex-entry]



22. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Medical image registration algorithms assessment: Bronze Standard application enactment on grids using the MOTEUR workflow engine. In Proc. of the HealthGrid conference (HealthGrid'06), Valencia, Spain, June 7-9, volume 120 of Studies in Health Technology and Informatics, pages 93-103, 2006. [bibtex-entry]



23. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Probabilistic and dynamic optimization of job partitioning on a grid infrastructure. In 14th euromicro conference on Parallel, Distributed and network-based Processing (PDP06), Montbéliard-Sochaux, pages 231-238, February 2006. IEEE. [bibtex-entry]



24. Tristan Glatard, Xavier Pennec, and Johan Montagnat. Performance evaluation of grid-enabled registration algorithms using bronze-standards. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part II, volume 4191 of LNCS, pages 152-160, 2-4 October 2006. Springer. [bibtex-entry]



25. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating Tumor Invasion Margins for Physiologically Determined Radiotherapy Regions. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, number 4190 of LNCS, pages 338-346, 2-4 October 2006. Keyword(s): Tumor growth modeling, Glioma, brain tumors, radiotherapy, hamilton jacobi, DT-MRI, DTI, Diffusion Tensor, fisher kolmogorov, F-KPP. [bibtex-entry]



26. M.G. Linguraru and R.D. Howe. Texture-based Segmentation of Instruments in 3D Ultrasound. In E.L. Siegel, E. Krupinski, and M. Sonka, editors, SPIE Medical Imaging '06, 2006. SPIE Publishing. [bibtex-entry]



27. M.G. Linguraru, N.V. Vasilyev, P.J. del Nido, and R.D. Howe. Atrial Septal Defect Tracking in 3D Cardiac Ultrasound. In R. Larsen, M. Nielsen, and M. Sporring, editors, Medical Image Computing and Computer-Assisted Intervention - MICCAI'06, volume 4190 of LNCS, pages 596-603, 2006. Springer. [bibtex-entry]



28. Johan Montagnat, Tristan Glatard, and Diane Lingrand. Data composition patterns in service-based workflows. In Workshop on Workflows in Support of Large-Scale Science (WORKS'06), Paris, France, June 2006. [bibtex-entry]



29. Xavier Pennec. Left-Invariant Riemannian Elasticity: a distance on shape diffeomorphisms ?. In Xavier Pennec and Sarang Joshi, editors, 1st MICCAI Workshop on Mathematical Foundations of Computational Anatomy: Geometrical, Statistical and Registration Methods for Modeling Biological Shape Variability, Copenhagen, Danemark, pages 1-13, October 2006. [Abstract] [bibtex-entry]



30. Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, Elliot McVeigh, and Nicholas Ayache. Towards a Statistical Atlas of Cardiac Fiber Structure. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, volume 4190 of LNCS, pages 297-304, 2-4 October 2006. Springer. Keyword(s): DT-MRI, DTI, Diffusion Tensor, Log-Euclidean, Cardiac Fiber, Heart, Myocardium, Atlas. [bibtex-entry]



31. Mihaela Pop, Maxime Sermesant, Yves Coudière, J. Graham, M. Bronskill, A. Dick, and Graham Wright. A theoretical model of ventricular reentry and its radiofrequency ablation therapy. In 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano (ISBI'06), pages 33-36, 2006. [bibtex-entry]



32. Mihaela Pop, Maxime Sermesant, Alexander Dick, John Graham, Yves Coudière, and Graham Wright. Aid of Computer Modelling to Identify Ventricular Reentries due to Infarct Scars. In 15th World Congress in Cardiac Electrophysiology and Cardiac Techniques (Cardiostim'06), 2006. [bibtex-entry]



33. Mihaela Pop, Maxime Sermesant, Alexander Dick, John Graham, Yves Coudière, and Graham Wright. Assessment of Radio-frequency Ablation of Ventricular Arrhythmias Via Magnetic Resonance Imaging and Computer Modelling. In 15th World Congress in Cardiac Electrophysiology and Cardiac Techniques (Cardiostim'06), 2006. [bibtex-entry]

1. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. A Fast and Log-Euclidean Polyaffine Framework for Locally Affine Registration. Research report RR-5865, INRIA Sophia-Antipolis, March 2006. Keyword(s): Polyaffine transformations, Diffeomorphisms, Non-rigid registration, Multi-affine registration, Lie groups, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]



2. Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Bi-invariant Means in Lie Groups. Application to Left-invariant Polyaffine Transformations. Research report RR-5885, INRIA Sophia-Antipolis, April 2006. Keyword(s): Bi-invariant means, Fréchet means, Statistics, Lie groups, Riemannian geometry, Polyaffine transformations, Diffeomorphisms. [bibtex-entry]



3. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Kiralee M. Hayashi, Paul M. Thompson, and Nicholas Ayache. Measuring Brain Variability by Extrapolating Sparse Tensor Fields Measured on Sulcal Lines. Research report RR-5887, INRIA, April 2006. [bibtex-entry]



4. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Optimizing jobs timeouts on clusters and production grids. Technical report I3S/RR-2006-35-FR, I3S, 2006. [bibtex-entry]



5. Tristan Glatard, Johan Montagnat, Xavier Pennec, David Emsellem, and Diane Lingrand. MOTEUR: a data-intensive service-based workflow manager. Technical report I3S/RR-2006-07-FR, I3S RAINBOW team, Univ. Nice-Sophia-Antipolis, March 2006. [bibtex-entry]



6. Martin Huber, Xavier Pennec, Alessandro Verri, Harry Dimitropoulos, Maxime Sermesant, Cristian Mircean, Sonja Zilner, Homer Metaxas, Michael Lynch, Ender Konukoglu, Maria-Luisa Garre, Anna Charisi, Curzio Basso, and Elise Arnaud. State of the art report on disease models, decision support systems and knwoledge discovery for pediatric oncology, cardiology and rheumatology. Deliverables 11.1, 12.1, 13.1, European project Health-e-Child (IST-2004-027749), June 2006. [bibtex-entry]



7. Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, Elliot McVeigh, and Nicholas Ayache. Towards a Statistical Atlas of Cardiac Fiber Architecture. Research report RR-5906, INRIA, May 2006. Keyword(s): DT-MRI, DTI, Diffusion Tensor, Log-Euclidean, Cardiac Fiber, Heart, Myocardium, Atlas. [bibtex-entry]

1. Vincent Arsigny, Xavier Pennec, Pierre Fillard, and Nicholas Ayache. Device for processing raw images or tensor images. US patent US 2008/0170802 (filed 07.04.2006, published 17.07.2008, July 2006. [bibtex-entry]

1. Romain Vauchelles. Mise en place d'un programme d'analyse d'images en wound healing et mise en évidence du rôle de l'activation de Arf 1 par le GEF ARNO dans la migration cellulaire. Master's thesis, Master Imagerie pour la Biologie, Université de Rouen, 2006. [bibtex-entry]



2. Nicholas Ayache, Jean-Pierre Boissel, Soren Brunak, Gordon Clapworthy, Guy Lonsdale, Jochen Fingberg, Alejandro Frangi, Gustavo Deco, Peter Hunter, Poul Nielsen, Matt Halstead, Rod Hose, Isabelle Magnin, Fernando Martin-Sanchez, Peter Sloot, Jaap Kaandorp, Alfons Hoekstra, Serge Van Sint Jan, and Marco Viceconti. Towards Virtual Physiological Human: Multilevel Modelling and Simulation of the Human Anatomy and Physiology. Virtual Physiological Human: White paper, EC - DG INFSO and DG JRC, 2006. [bibtex-entry]



3. N. Bernasconi, P. Besson, T. Mansi, and A. Bernasconi. MRI Texture Analysis Enhances the Visibility of Cortical Tubers in Tuberous Sclerosis. Annual Meeting of the American Epilepsy Society AES 2006 (abstracts), 2006. [bibtex-entry]



4. Pierre Fillard, Nicolas Toussaint, and Xavier Pennec. MedINRIA: DT-MRI Processing and Visualization Software, November 2006. Note: Guest paper at the Similar Tensor Workshop, Las Palmas, Spain. [bibtex-entry]



5. Aurélie Isambert, Guillaume Bonniaud, R. Lery, R. Comtat, Jean-Christophe Diaz, Grégoire Malandain, and Dimitri Lefkopoulos. Evaluation sur fantôme d'un logiciel de recalage d'images multimodales automatique pour la radiothérapie. 17e Congrès de la Société Française de Radiothérapie Oncologique (SFRO), November 2006. Note: Cancer radiothérapie 10(6-7):507, 2006. [bibtex-entry]



6. Aurélie Isambert, Frédéric Dhermain, F. Bidault, Guillaume Bonniaud, R. Lery, Grégoire Malandain, Olivier Commowick, Jean-Christophe Diaz, Jean Bourhis, and Dimitri Lefkopoulos. Evaluation of Multimodality Image Registration Software and Atlas-based Automatic Segmentation for Delineation of Organs at Risk (OAR) in the Brain in Conformal Radiotherapy (CRT). 48th Annual Meeting of the American Society for Therapeutic Radiology and Oncology (ASTRO), November 2006. Keyword(s): Multimodality image registration, atlas-based automatic segmentation, radiation therapy. [bibtex-entry]



7. Aurélie Isambert, Frédéric Dhermain, Guillaume Bonniaud, F. Bidault, A. Beaudre, Grégoire Malandain, Olivier Commowick, Jean-Christophe Diaz, M. Ricard, Jean Bourhis, and Dimitri Lefkopoulos. Evaluation d'un logiciel de recalage d'images multimodal et d'un outil de segmentation automatique des organes à risque (OAR) intra-crâniens en situation clinique d'une radiothérapie conformationnelle 3D (RTC3D). Congrès annuel de la Société Française des Physiciens Médicaux (SFPM), June 2006. [bibtex-entry]



8. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating tumor invasion margins for physiologically determined radiotherapy regions. Presented in DIMACS Workshop: Computational Tumor Modeling, 2006. [bibtex-entry]



9. Xavier Pennec. A European paediatric platform. INédit 56, p.4, November 2006. [bibtex-entry]



10. Aymeric Perchant, Tom Vercauteren, Charlotte Cavé, and Sacha Loiseau. Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences Improves Multimodality Approach. Proc. Radiological Society of North America (RSNA'06), December 2006. Note: Abstract only. [bibtex-entry]

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