Publications of Christof Seiler


  1. Christof Seiler. Trees on Geometrical Deformations to Model the Statistical Variability of Organs in Medical Images. Ph.D. Thesis, University of Nice Sophia Antipolis and University of Bern, September 2012. [bibtex-entry]

Articles in journal, book chapters

  1. R. Blanc, Christof Seiler, G. Székely, L. Nolte, and Mauricio Reyes. Statistical Model Based Shape Prediction from a Combination of Direct Observations and Various Surrogates. Medical Image Analysis (MedIA), 16(6):1156-1166, 2012. [bibtex-entry]

  2. L. Ritacco, Christof Seiler, G. Farfalli, L. Nolte, Mauricio Reyes, D. Muscolo, and L. Tinao. Validity of an Automatic Measure Protocol in Distal Femur for Allograft Selection from a Three-Dimensional Virtual Bone Bank System. Cell and Tissue Banking, 2012. Note: To appear. [bibtex-entry]

  3. Christof Seiler, A. Gazdhar, Mauricio Reyes, L.M. Benneker, T. Geiser, K.A. Siebenrock, and B. Gantenbein-Ritter. Time-Lapse Microscopy and Classification of 2D Human Mesenchymal Stem Cells Based on Cell Shape Picks Up Myogenic from Osteogenic and Adipogenic Differentiation. Journal of Tissue Engineering and Regenerative Medicine, 2012. Note: To appear. [bibtex-entry]

  4. Christof Seiler, Xavier Pennec, and Mauricio Reyes. Capturing the Multiscale Anatomical Shape Variability with Polyaffine Transformation Trees. Medical Image Analysis (MedIA), 16(7):1371-1384, 2012. [bibtex-entry]

  5. Christof Seiler, P. Büchler, L.-P. Nolte, R. Paulsen, and Mauricio Reyes. Hierarchical Markov Random Fields Applied to Model Soft Tissue Deformations on Graphics Hardware. In J. J. Zhang N. Magnenat-Thalmann and D. D. Feng, editors, Recent Advances in the 3D Physiological Human, pages 133-148. Springer, 2009. ISBN: 978-1-84882-564-2. [bibtex-entry]

Conference articles

  1. Kristin Mcleod, Christof Seiler, Maxime Sermesant, and Xavier Pennec. Spatio-Temporal Dimension Reduction of Cardiac Motion for Group-Wise Analysis and Statistical Testing. In Kensaku Mori, Ichiro Sakuma, Yoshinobu Sato, Christian Barillot, and Nassir Navab, editors, MICCAI - Medical Image Computing and Computer Assisted Intervention - 2013, volume 8150 of Lecture Notes in Computer Science, Nagoya, Japan, pages 501-508, 2013. Springer, Heidelberg. [bibtex-entry]

  2. Kristin Mcleod, Christof Seiler, Nicolas Toussaint, Maxime Sermesant, and Xavier Pennec. Regional Analysis of Left Ventricle Function using a Cardiac-Specific Polyaffine Motion Model. In Sébastien Ourselin, Daniel Rueckert, and Nicolas Smith, editors, Functional Imaging and Modeling of the Heart 2013 (FIMH), volume 7945 of Lecture Notes in Computer Science, London, United Kingdom, pages 483-490, June 2013. Springer. [bibtex-entry]

  3. Christof Seiler, Xavier Pennec, and Susan Holmes. Random Spatial Structure of Geometric Deformations and Bayesian Nonparametrics. In GSI - Geometric Science of Information - 2013, volume 8085 of Lecture Notes in Computer Science - LNCS, Paris, France, pages 120-127, August 2013. Springer. [bibtex-entry]

  4. H. Bou-Sleiman, Christof Seiler, T. Iizuka, L. Nolte, and Mauricio Reyes. Population-Based Design of Mandibular Plates Based on Bone Quality and Morphology. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), volume 7510 of LNCS, pages 66-73, October 2012. Springer, Heidelberg. [bibtex-entry]

  5. Kristin McLeod, Christof Seiler, Maxime Sermesant, and Xavier Pennec. A Near-Incompressible Poly-Affine Motion Model for Cardiac Function Analysis. In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function + a Cardiac Electrophysiological Simulation Challenge (STACOM+CESC'12), LNCS, Nice, October 2012. Springer. [bibtex-entry]

  6. Christof Seiler, Xavier Pennec, and Mauricio Reyes. Simultaneous Multiscale Polyaffine Registration by Incorporating Deformation Statistics. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), volume 7511 of LNCS, pages 130-137, October 2012. Springer, Heidelberg. ISBN: 978-3-642-33417-7. [bibtex-entry]

  7. S. Bonaretti, Christof Seiler, C. Boichon, P. Bchler, and Mauricio Reyes. Mesh-based vs. Image-based Statistical Model of Appearance of the Human Femur: A Preliminary Comparison Study for the Creation of Finite Element Meshes. In Mesh Processing in Medical Image Analysis Workshop MICCAI, 2011. [bibtex-entry]

  8. Christof Seiler, Xavier Pennec, and Mauricio Reyes. Geometry-Aware Multiscale Image Registration Via OBBTree-Based Polyaffine Log-Demons. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2011 (MICCAI), volume 6892 of LNCS, pages 631-638, September 2011. Springer, Heidelberg. Note: Young Scientist Award. [bibtex-entry]

  9. Christof Seiler, Xavier Pennec, Lucas Ritacco, and Mauricio Reyes. Femur Specific Polyaffine Model to Regularize the Log-Domain Demons Registration. In Benoit M. Dawant and David R. Haynor, editors, Proceedings of SPIE Medical Imaging '11, volume 7962, pages Paper 7962-15, January 2011. SPIE Publishing. ISBN: 9780819485045. [bibtex-entry]

  10. S. Bauer, Christof Seiler, T. Bardyn, P. Büchler, and Mauricio Reyes. Atlas-Based Segmentation of Brain Tumor Images Using a Markov Random Field-Based Tumor Growth Model and Non-Rigid Registration. In EMBC, September 2010. [bibtex-entry]

  11. S. Bonaretti, M. Kistler, C. Seiler, M. Reyes, and P. Büchler. Combined Statistical Model of Bone Shape and Mechanical Properties for Bone and Implant Modeling. In CMBBE, February 2010. [bibtex-entry]

  12. Christof Seiler, Xavier Pennec, and Mauricio Reyes. Parametric regression of 3D medical images through the exploration of non-parametric regression models. In Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), pages 452-455, 2010. IEEE. [bibtex-entry]

  13. R. Blanc, Mauricio Reyes, Christof Seiler, and G. Székely. Conditional Variability of Statistical Shape Models Based on Surrogate Variables. In Proceedings of Medical Image Computing and Computer Assisted Intervention 2009 (MICCAI), volume 5762 of LNCS, pages 84-91, September 2009. Springer, Heidelberg. [bibtex-entry]


  1. Christof Seiler, A. Gazdhar, T. Geiser, Mauricio Reyes, and B. Gantenbein-Ritter. Mesenchymal Stem Cell Classification During Differentiation Based on Shape Information. TERMIS, Galway, Ireland, June 2010. Note: Abstract. [bibtex-entry]

  2. Christof Seiler, S. Weber, W. Schmidt, F. Fischer, N. Reimers, and Mauricio Reyes. Automatic Landmark Propagation for Left and Right Symmetry Assessment of Tibia and Femur: A Computational Anatomy Based Approach. CAOS, Boston, USA, June 2009. Note: Abstract. [bibtex-entry]



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