Contents

• Introduction
  • System Requirements
  • Purpose and Organization of MedINRIA
  
  
• Image Viewer Module
  • File Formats
  • DICOM import
  • Image browsing
  • 2D-3D view interactions
    • 2D Views
    • 3D View
  • Image reorientation tool
  
  
• DTI Track Module
  • File Formats
  • Data Importation
  • Image visualization
    • 2D Views
    • 3D View
  • DTI Analysis and Fiber Tracking
    • Tensor Estimation and Smoothing
    • Scalar Maps
    • Fiber Tracking
  • Fiber Extraction
    • The Cropping Box
    • Regions Of Interest (ROI)
    • Fiber Manager
  • Statistics
  • Other Features
    • fMRI: Activation Map Visualization
    • DTI fMRI
  
  
• Tensor Viewer Module
  • Tensor visualization
  • Tensor/Image visualization
  • Navigation
  • Tensor flipping
  
  
• Registration Tool Module
  • Image import
  • Navigation
  • Rigid Registration Process
  • Affine Registration Process
  • Diffeomorphic Demons Registration
  • Result evaluation
  • Outputs and matrices
  • Perspectives
  
  
• Lesion Segmentation Editor Module
  • Introduction
    • Applications
    • Segmentation modes
    • This tutorial
  • Preliminary steps
    • Files Requirements
    • Import a DICOM folder
    • Open image
    • Rotate/Flip current image
    • Load ROI
  • Data visualization
    • Image Tabs
    • Delineation Tab
  • How to segment in LSE ?
    • Manual Segmentation
    • Semi-automatic segmentation
    • Segmentation principle
  • What are LSE results ?
    • Lesions in 3D
    • Label File
    • Statistics
  • Conclusions on LSE
  
  
• Lesion Segmentation Comparator Module
  • Introduction
    • Applications
    • Segmentation comparison criteria
    • This tutorial
  • Segmentations Loading
    • Files Requirements
    • Load images
  • What are LSC results ?
    • To get statistics
  • Conclusions on LSC
  
  
• Conclusions on MedINRIA
• Diffusion gradients and registration matrix files
  • Diffusion gradients files
  • Registration matrix files