Gregoire.Malandain@inria.fr
	INRIA - Morpheme team 2004 route des lucioles, B.P. 93 06 902 Sophia-Antipolis cedex France

Short bio

G. Malandain received an engineer degree from the Ecole Centrale des Arts et Manufactures in 1989, a PhD degree in medical image analysis in 1992, and a habilitation degree in 2006. He entered INRIA at Sophia-Antipolis in 1993, and became senior research scientist in 2001. From 1998, he was team coordinator of Epidaure team and then from Asclepios team from 2005. Since 2009, he is deputy scientific director of INRIA in charge of the "Computational Sciences for Biology, Medicine and the Environment domain".

G. Malandain began research in medical image analysis in 1989 at INRIA Rocquencourt. His methodological research interests include discrete topology, image segmentation, image registration, and atlas building. Driving applications include multiple sclerosis biomarkers, radiotherapy planification, and pre-clinical and biological image analysis.

Publications / Bibliography

• Asclepios site
• HAL INRIA site

Resume / CV

Available codes

• 2D/3D edge detector: A small library (written in C) allowing 2D or 3D edge detection with recursive filtering is available for non-commercial uses only (see Monga et al., IVC, 1991).
• Connected components extraction: with the edge detection library comes already a hysteresis thresholding software. Other calls (counting and labeling connected components in 2D or in 3D) are available. A small library, allowing connected components labeling and hysteresis thresholding is also available for non-commercial uses only. Designing other procedures (extracting components containing seeds, or holes filling) should be really easy.
• Resampling of 2D/3D images: Code for resampling of 2D or 3D images with linear (or nearest neighbor) interpolation using a 4 by 4 matrix is also available for non-commercial uses only.
• Pretty printer of bibtex files in html: My list of publications as well as the bibliography of the team has been generated with this tool. See the documentation for a complete description and to get the code.
• Diameter of a point set: see the corresponding page
• Computation of optimal Chamfer masks and coefficients see the corresponding page

Documentation, help, and tricks

• Everything You Always Wanted to Know About Shells but were afraid to ask. A short quick help about shells' syntax (loops, etc).