Publications of Josiane Zerubia

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• 59 Articles
• 173 Conference articles
• 64 Technical and Research Reports
• 7 Collection articles or Books chapters
• 3 Books

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59 Articles

21 - Higher-Order Active Contour Energies for Gap Closure. M. Rochery and I. H. Jermyn and J. Zerubia. Journal of Mathematical Imaging and Vision, 29(1): pages 1-20, September 2007. Keywords : Gap closure, Higher-order, Active contour, Shape, Prior, Road network. @ARTICLE{Rochery07, author = {Rochery, M. and Jermyn, I. H. and Zerubia, J.}, title = {Higher-Order Active Contour Energies for Gap Closure}, year = {2007}, month = {September}, journal = {Journal of Mathematical Imaging and Vision}, volume = {29}, number = {1}, pages = {1-20}, url = {http://dx.doi.org/10.1007/s10851-007-0021-x}, pdf = {ftp://ftp-sop.inria.fr/ariana/Articles/2007_Rochery07.pdf}, keyword = {Gap closure, Higher-order, Active contour, Shape, Prior, Road network} } Abstract : One of the main difficulties in extracting line networks from images, and in particular road networks from remote sensing images, is the existence of interruptions in the data caused, for example, by occlusions. These can lead to gaps in the extracted network that do not correspond to gaps in the real network. In this paper, we describe a higher-order active contour energy that in addition to favouring network-like regions, includes a prior term penalizing networks containing ‘nearby opposing extremities’, thereby making gaps in the extracted network less likely. The new energy term causes such extremities to attract one another during gradient descent. They thus move towards one another and join, closing the gap. To minimize the energy, we develop specific techniques to handle the high-order derivatives that appear in the gradient descent equation. We present the results of automatic extraction of networks from real remote-sensing images, showing the ability of the model to overcome interruptions.

22 - Gaussian approximations of fluorescence microscope point-spread function models. B. Zhang and J. Zerubia and J.C. Olivo-Marin. Applied Optics, 46(10): pages 1819-1829, April 2007. Copyright : © 2007 Optical Society of America @ARTICLE{jz_applied_photo, author = {Zhang, B. and Zerubia, J. and Olivo-Marin, J.C.}, title = {Gaussian approximations of fluorescence microscope point-spread function models}, year = {2007}, month = {April}, journal = {Applied Optics}, volume = {46}, number = {10}, pages = {1819-1829}, keyword = {} } Abstract : We comprehensively study the least-squares Gaussian approximations of the diffraction-limited 2D-3D paraxial-nonparaxial point-spread functions (PSFs) of the wide field fluorescence microscope (WFFM), the laser scanning confocal microscope (LSCM), and the disk scanning confocal microscope (DSCM). The PSFs are expressed using the Debye integral. Under an L∞ constraint imposing peak matching, optimal and near-optimal Gaussian parameters are derived for the PSFs. With an L1 constraint imposing energy conservation, an optimal Gaussian parameter is derived for the 2D paraxial WFFM PSF. We found that (1) the 2D approximations are all very accurate; (2) no accurate Gaussian approximation exists for 3D WFFM PSFs; and (3) with typical pinhole sizes, the 3D approximations are accurate for the DSCM and nearly perfect for the LSCM. All the Gaussian parameters derived in this study are in explicit analytical form, allowing their direct use in practical applications.

23 - Building Outline Extraction from Digital Elevation Models using Marked Point Processes. M. Ortner and X. Descombes and J. Zerubia. International Journal of Computer Vision, 72(2): pages 107-132, April 2007. Keywords : RJMCMC, Buildings, Stochastic geometry, Marked point process, Digital Elevation Model (DEM). @ARTICLE{ortner_ijcv_05, author = {Ortner, M. and Descombes, X. and Zerubia, J.}, title = {Building Outline Extraction from Digital Elevation Models using Marked Point Processes}, year = {2007}, month = {April}, journal = {International Journal of Computer Vision}, volume = {72}, number = {2}, pages = {107-132}, url = {http://www.springerlink.com/content/d563v16957427102/?p=873bd324c7c14049a45cc1f2905b5a86&pi=0}, keyword = {RJMCMC, Buildings, Stochastic geometry, Marked point process, Digital Elevation Model (DEM)} }

24 - Détection de feux de forêt par analyse statistique d'évènements rares à partir d'images infrarouges thermiques. F. Lafarge and X. Descombes and J. Zerubia and S. Mathieu. Traitement du Signal, 24(1), 2007. Note : copyright Traitement du Signal Keywords : Gaussian Field, Rare event, DT-caracteristic, Intensity peak. @ARTICLE{lafarge_ts06, author = {Lafarge, F. and Descombes, X. and Zerubia, J. and Mathieu, S.}, title = {Détection de feux de forêt par analyse statistique d'évènements rares à partir d'images infrarouges thermiques}, year = {2007}, journal = {Traitement du Signal}, volume = {24}, number = {1}, note = {copyright Traitement du Signal}, pdf = {ftp://ftp-sop.inria.fr/ariana/Articles/2007_lafarge_ts06.pdf}, keyword = {Gaussian Field, Rare event, DT-caracteristic, Intensity peak} }

25 - Computing Statistics from Man-Made Structures on the Earth's Surface for Indexing Satellite Images. A. Bhattacharya and M. Roux and H. Maitre and I. H. Jermyn and X. Descombes and J. Zerubia. International Journal of Simulation Modelling, 6(2): pages 73--83, 2007. @ARTICLE{Bhattacharya07, author = {Bhattacharya, A. and Roux, M. and Maitre, H. and Jermyn, I. H. and Descombes, X. and Zerubia, J.}, title = {Computing Statistics from Man-Made Structures on the Earth's Surface for Indexing Satellite Images}, year = {2007}, journal = {International Journal of Simulation Modelling}, volume = {6}, number = {2}, pages = {73--83}, url = {http://www.ijsimm.com/Full_Papers/Fulltext2007/text6-2_73-83.pdf}, pdf = {ftp://ftp-sop.inria.fr/ariana/Articles/2007_Bhattacharya07.pdf}, keyword = {} } Abstract : Indexing and retrieval from remote sensing image databases relies on the extraction of appropriate information from the data about the entity of interest (e.g. land cover type) and on the robustness of this extraction to nuisance variables. Other entities in an image may be strongly correlated with the entity of interest and their properties can therefore be used to characterize this entity. The road network contained in an image is one example. The properties of road networks vary considerably from one geographical environment to another, and they can therefore be used to classify and retrieve such environments. In this paper, we define several such environments, and classify them with the aid of geometrical and topological features computed from the road networks occurring in them. The relative failure of network extraction methods in certain types of urban area obliges us to segment such areas and to add a second set of geometrical and topological features computed from the segmentations. To validate the approach, feature selection and SVM linear kernel classification are performed on the feature set arising from a diverse image database.

26 - SAR Image Filtering Based on the Heavy-Tailed Rayleigh Model. A. Achim and E.E. Kuruoglu and J. Zerubia. IEEE Trans. on Image Processing, 15(9): pages 2686-2693, September 2006. Keywords : SAR Images. @ARTICLE{jz_ieee_tr_ip_06, author = {Achim, A. and Kuruoglu, E.E. and Zerubia, J.}, title = {SAR Image Filtering Based on the Heavy-Tailed Rayleigh Model}, year = {2006}, month = {September}, journal = {IEEE Trans. on Image Processing}, volume = {15}, number = {9}, pages = {2686-2693}, pdf = {http://dx.doi.org/10.1109/TIP.2006.877362}, keyword = {SAR Images} } Abstract : Synthetic aperture radar (SAR) images are inherently affected by a signal dependent noise known as speckle, which is due to the radar wave coherence. In this paper, we propose a novel adaptive despeckling filter and derive a maximum a posteriori (MAP) estimator for the radar cross section (RCS). We first employ a logarithmic transformation to change the multiplicative speckle into additive noise. We model the RCS using the recently introduced heavy-tailed Rayleigh density function, which was derived based on the assumption that the real and imaginary parts of the received complex signal are best described using the alpha-stable family of distribution. We estimate model parameters from noisy observations by means of second-kind statistics theory, which relies on the Mellin transform. Finally, we compare the proposed algorithm with several classical speckle filters applied on actual SAR images. Experimental results show that the homomorphic MAP filter based on the heavy-tailed Rayleigh prior for the RCS is among the best for speckle removal

27 - Higher Order Active Contours. M. Rochery and I. H. Jermyn and J. Zerubia. International Journal of Computer Vision, 69(1): pages 27--42, August 2006. Keywords : Active contour, Shape, Higher-order, Prior, Road network. @ARTICLE{mr_ijcv_06, author = {Rochery, M. and Jermyn, I. H. and Zerubia, J.}, title = {Higher Order Active Contours}, year = {2006}, month = {August}, journal = {International Journal of Computer Vision}, volume = {69}, number = {1}, pages = {27--42}, url = {http://dx.doi.org/10.1007/s11263-006-6851-y}, pdf = {ftp://ftp-sop.inria.fr/ariana/Articles/2006_mr_ijcv_06.pdf}, keyword = {Active contour, Shape, Higher-order, Prior, Road network} } Abstract : We introduce a new class of active contour models that hold great promise for region and shape modelling, and we apply a special case of these models to the extraction of road networks from satellite and aerial imagery. The new models are arbitrary polynomial functionals on the space of boundaries, and thus greatly generalize the linear functionals used in classical contour energies. While classical energies are expressed as single integrals over the contour, the new energies incorporate multiple integrals, and thus describe long-range interactions between different sets of contour points. As prior terms, they describe families of contours that share complex geometric properties, without making reference to any particular shape, and they require no pose estimation. As likelihood terms, they can describe multi-point interactions between the contour and the data. To optimize the energies, we use a level set approach. The forces derived from the new energies are non-local however, thus necessitating an extension of standard level set methods. Networks are a shape family of great importance in a number of applications, including remote sensing imagery. To model them, we make a particular choice of prior quadratic energy that describes reticulated structures, and augment it with a likelihood term that couples the data at pairs of contour points to their joint geometry. Promising experimental results are shown on real images.

28 - SAR amplitude probability density function estimation based on a generalized Gaussian model. G. Moser and J. Zerubia and S.B. Serpico. IEEE Trans. on Image Processing, 15(6): pages 1429-1442, June 2006. Keywords : SAR Images, Generalised Gaussians, Mellin transform. Copyright : IEEE @ARTICLE{moser_ieeeip05, author = {Moser, G. and Zerubia, J. and Serpico, S.B.}, title = {SAR amplitude probability density function estimation based on a generalized Gaussian model}, year = {2006}, month = {June}, journal = {IEEE Trans. on Image Processing}, volume = {15}, number = {6}, pages = {1429-1442}, url = {http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=1632197}, pdf = {http://hal.archives-ouvertes.fr/inria-00561372/en/}, keyword = {SAR Images, Generalised Gaussians, Mellin transform} } Abstract : In the context of remotely sensed data analysis, an important problem is the development of accurate models for the statistics of the pixel intensities. Focusing on synthetic aperture radar (SAR) data, this modeling process turns out to be a crucial task, for instance, for classification or for denoising purposes. In this paper, an innovative parametric estimation methodology for SAR amplitude data is proposed that adopts a generalized Gaussian (GG) model for the complex SAR backscattered signal. A closed-form expression for the corresponding amplitude probability density function (PDF) is derived and a specific parameter estimation algorithm is developed in order to deal with the proposed model. Specifically, the recently proposed “method-of-log-cumulants” (MoLC) is applied, which stems from the adoption of the Mellin transform (instead of the usual Fourier transform) in the computation of characteristic functions and from the corresponding generalization of the concepts of moment and cumulant. For the developed GG-based amplitude model, the resulting MoLC estimates turn out to be numerically feasible and are also analytically proved to be consistent. The proposed parametric approach was validated by using several real ERS-1, XSAR, E-SAR, and NASA/JPL airborne SAR images, and the experimental results prove that the method models the amplitude PDF better than several previously proposed parametric models for backscattering phenomena.

29 - Richardson-Lucy Algorithm with Total Variation Regularization for 3D Confocal Microscope Deconvolution. N. Dey and L. Blanc-Féraud and C. Zimmer and Z. Kam and P. Roux and J.C. Olivo-Marin and J. Zerubia. Microscopy Research Technique, 69: pages 260-266, April 2006. Keywords : Confocal microscopy, Variational methods, Total variation, Deconvolution. @ARTICLE{dey_mrt_05, author = {Dey, N. and Blanc-Féraud, L. and Zimmer, C. and Kam, Z. and Roux, P. and Olivo-Marin, J.C. and Zerubia, J.}, title = {Richardson-Lucy Algorithm with Total Variation Regularization for 3D Confocal Microscope Deconvolution}, year = {2006}, month = {April}, journal = {Microscopy Research Technique}, volume = {69}, pages = {260-266}, url = {http://dx.doi.org/10.1002/jemt.20294}, keyword = {Confocal microscopy, Variational methods, Total variation, Deconvolution} } Abstract : Confocal laser scanning microscopy is a powerful and popular technique for 3D imaging of biological specimens. Although confocal microscopy images are much sharper than standard epifluorescence ones, they are still degraded by residual out-of-focus light and by Poisson noise due to photon-limited detection. Several deconvolution methods have been proposed to reduce these degradations, including the Richardson-Lucy iterative algorithm, which computes a maximum likelihood estimation adapted to Poisson statistics. As this algorithm tends to amplify noise, regularization constraints based on some prior knowledge on the data have to be applied to stabilize the solution. Here, we propose to combine the Richardson-Lucy algorithm with a regularization constraint based on Total Variation, which suppresses unstable oscillations while preserving object edges. We show on simulated and real images that this constraint improves the deconvolution results as compared to the unregularized Richardson-Lucy algorithm, both visually and quantitatively.

30 - Dictionary-Based Stochastic Expectation-Maximization for SAR Amplitude Probability Density Function Estimation. G. Moser and J. Zerubia and S.B. Serpico. IEEE Trans. Geoscience and Remote Sensing, 44(1): pages 188-200, January 2006. Keywords : SAR Images, Stochastic EM (SEM), Dictionary. Copyright : IEEE @ARTICLE{moser_ieeetgrs_05, author = {Moser, G. and Zerubia, J. and Serpico, S.B.}, title = {Dictionary-Based Stochastic Expectation-Maximization for SAR Amplitude Probability Density Function Estimation}, year = {2006}, month = {January}, journal = {IEEE Trans. Geoscience and Remote Sensing}, volume = {44}, number = {1}, pages = {188-200}, url = {http://dx.doi.org/10.1109/TGRS.2005.859349}, pdf = {http://hal.archives-ouvertes.fr/inria-00561369/en/}, keyword = {SAR Images, Stochastic EM (SEM), Dictionary} } Abstract : In remotely sensed data analysis, a crucial problem is represented by the need to develop accurate models for the statistics of the pixel intensities. This paper deals with the problem of probability density function (pdf) estimation in the context of synthetic aperture radar (SAR) amplitude data analysis. Several theoretical and heuristic models for the pdfs of SAR data have been proposed in the literature, which have been proved to be effective for different land-cover typologies, thus making the choice of a single optimal parametric pdf a hard task, especially when dealing with heterogeneous SAR data. In this paper, an innovative estimation algorithm is described, which faces such a problem by adopting a finite mixture model for the amplitude pdf, with mixture components belonging to a given dictionary of SAR-specific pdfs. The proposed method automatically integrates the procedures of selection of the optimal model for each component, of parameter estimation, and of optimization of the number of components by combining the stochastic expectation–maximization iterative methodology with the recently developed “method-of-log-cumulants” for parametric pdf estimation in the case of nonnegative random variables. Experimental results on several real SAR images are reported, showing that the proposed method accurately models the statistics of SAR amplitude data.

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