org.objectweb.proactive.calcium.examples.blast
Class BlastParameters

java.lang.Object
  org.objectweb.proactive.calcium.examples.blast.BlastParameters

public class BlastParameters
extends java.lang.Object

Constructor Summary

BlastParameters(java.io.File queryFile, java.io.File databaseFile, boolean isNucleotide, long maxDBSize)

Method Summary

java.lang.String	getBlastParemeterString()
java.io.File	getDatabaseFile()
int	getDivideDBInto()
java.lang.String	getFormatDBString()
java.lang.String	getFormatQueryString()
long	getMaxDBSize()
java.io.File	getOutPutFile()
java.io.File	getQueryFile()
java.io.File	getWorkingDirectory()
boolean	isNucleotide()
protected boolean	isRootParameter()
void	setRootParameter(boolean value)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastParameters

public BlastParameters(java.io.File queryFile,
                       java.io.File databaseFile,
                       boolean isNucleotide,
                       long maxDBSize)

Method Detail

getBlastParemeterString

public java.lang.String getBlastParemeterString()

getFormatQueryString

public java.lang.String getFormatQueryString()

getFormatDBString

public java.lang.String getFormatDBString()

getDatabaseFile

public java.io.File getDatabaseFile()

Returns:

Returns the databaseFile.

getMaxDBSize

public long getMaxDBSize()

Returns:

Returns the maxDBSize.

getDivideDBInto

public int getDivideDBInto()

Returns:

Returns the divideDBInto.

getQueryFile

public java.io.File getQueryFile()

Returns:

Returns the queryFile.

isNucleotide

public boolean isNucleotide()

Returns:

Returns the isNucleotide.

getWorkingDirectory

public java.io.File getWorkingDirectory()

Returns:

Returns the workingDirectory.

getOutPutFile

public java.io.File getOutPutFile()

Returns:

Returns the outPutFile.

setRootParameter

public void setRootParameter(boolean value)

isRootParameter

protected boolean isRootParameter()

Returns:

Returns the isRootParameter.