PROGRAM (may be subject to change)
Wednesday, March 18 |
| 9:30-10:00 |
Registration |
10:00-11:00
Room Kahn 1,2,3 |
Session 1: Initiatives in Computational Structural Biology |
- O. Corby (INRIA, Sophia Antipolis, France): Ontologies and Knowledge Engineering in Biology: a Semantic Web Approach.
|
| 11:00-11:30 |
Coffee break |
11:30-12:30
Room Kahn 1,2,3 |
Session 1 (cont'd) |
- J. Janin (Université Paris-Sud, Orsay, France): The CAPRI experiment: can we predict macromolecular interactions?
|
| 12:30-13:30 |
Lunch |
13:30-14:30
Hall Kahn |
Poster Session |
14:30-16:00
Room Kahn 1,2,3 |
Session 2: Algorithms for Computational Structural Biology |
- J. Cortes (LAAS, Toulouse, France): Path Planning Algorithms: From Robotics to Structural Biology.
- S. Redon (INRIA, Grenoble, France): Efficient modeling and simulation of flexibility using adaptive molecular quasi-statics.
- M. Spagnuolo (IMATI, Genova, Italy): Computational methods for understanding 3D shapes, with applications to molecular shapes.
|
| 16:00-16:30 |
Coffee break |
16:30-17:30
Room Kahn 1,2,3 |
Session 3: Contributed talks |
- L. Charlier (Université de Nice-Sophia Antipolis, Nice, France): Influence of the flexibility on the prediction of ligand/receptor affinity.
- Y. Hashem (Université de Strasbourg, Strasbourg, France): Dynamic complementarity between the paromomycine antibiotic and the bacterial rRNA A-site target.
|
| Evening |
Diner on your own |
Thursday, March 19 |
9:30-10:30
Room Kahn 1,2,3 |
Session 4: Dynamics and Applications |
- E. Lindahl (Stockholm University, Sweden): Insertion, stabilization, and function of non-hydrophobic segments in membrane proteins.
|
| 10:30-11:00 |
Coffee break |
11:00-13:00
Room Kahn 1,2,3 |
Session 4 (cont'd) |
- M. Levitt (Stanford University, USA): Molecular Motion in Large Biological Complexes.
- P. Chakrabarti (Bose Institute, Kolkata, India): Protein-protein interactions - residue conservation and empirical estimation of free energy of binding.
|
| 13:00-14:15 |
Lunch |
| 14:15 |
Departure to Monaco from INRIA (Shuttle ETD 14:15) |
15:30-17:30
|
Visit of the Monaco Aquarium |
17:30-19:30
|
Free time in Monaco |
19:30/19:45-22:30
|
Gala dinner in Monaco (Meeting point: Restaurant Quai des Artistes) |
| 22:30 |
Departure from Monaco to Antibes and INRIA |
Friday, March 20 |
9:30-10:30
Room Kahn 1,2,3 |
Session 5: Modelling of Large Biological Assemblies |
- R. Lavery (IBCP, Lyon, France): An atomic-scale approach to nucleosome positioning.
|
| 10:30-11:00 |
Coffee break |
11:00-12:00
Room Kahn 1,2,3 |
Session 5 (cont'd) |
- F. Cazals (INRIA, Sophia Antipolis, France): Assessing the stability of complexes within large protein assemblies: a proof of concept based on the Nuclear Pore Complex.
|
12:00-13:00
Room Kahn 1,2,3 |
Session 6: Docking and Interaction Structural Analysis |
- C. Prevost (IBPC, Paris, France): A multi-copy approach to flexible docking.
- A. Carbone (Université Pierre et Marie Curie, Paris, France): Large scale prediction of protein partners by crossing docking with evolutionary information.
|
| 13:00-14:00 |
Lunch |
14:00-15:00
Room Kahn 1,2,3 |
Session 6 (cont'd) |
- A. Poupon (INRA, Tours, France): Voronoi-based protein-protein docking.
- J. Bernauer (INRIA, Sophia Antipolis, France): Geometric models for protein interaction and structure prediction analysis.
|
| 15:00-15:30 |
Coffee break |
15:30-16:30
Room Kahn 1,2,3 |
Session 6 (cont'd) |
- S. Fiorucci (Université de Nice, France): Prediction of protein-protein interface using electrostatic profile.
- C. Robert (Université Paris-Sud, Orsay, France): Normal modes: getting better vibes.
|
| 16:30 |
Closing Remarks |
Speaker guidelines :
Sessions 1, 4 and 5: 50 minute talk, 10 minute question session
Sessions 2, 3 and 6: 20 minute talk, 5 minute question session
Contact :
fmr2009@lists-sop.inria.fr
Partnership:
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