Publications of year 2016

1. Mehdi Hadj-Hamou. Beyond volumetry in longitudinal deformation-based morphometry : application to sexual dimorphism during adolescence. Theses, COMUE Université Côte d'Azur (2015 - 2019), December 2016. Keyword(s): Longitudinal images, Evaluation, Volumetric methods, Non-rigid registration, Processing pipeline, Multivariate statistics, Group comparison, Sexual dimorphism, Méthodes pour la volumétrie, Dimorphisme sexuel, Comparaison de groupe, Statistiques multivariées, Chaîne de traitement, Recalage non-linéaire, Évaluation, Images longitudinales. [bibtex-entry]



2. Bishesh Khanal. Modeling and simulation of realistic longitudinal structural brain MRIs with atrophy in Alzheimer's disease. Theses, Université Nice Sophia Antipolis, July 2016. Keyword(s): Biophysical modelling, Synthetic longitudinal images, Biomechanical simulation, Longitudinal MRIs simulation, Simulation of atrophy, Alzheimer's disease, Neurodegeneration, Images longitudinales synthétiques, Simulation biomécanique, Simulation d'IRM longitudinale, Simulation de l'atrophie, Modélisation biophysique, Maladie d'Alzheimer, Neurodégénérescence. [bibtex-entry]



3. Matthieu Lê. Brain tumor growth modeling : application to radiotherapy. Theses, Université Nice Sophia Antipolis, June 2016. Keyword(s): Uncertainty, Segmentation, Radiotherapy, Personalization, Biophysical model, Medical imaging, Incertitude, Segmentation, Radiothérapie, Personnalisation, Modèle biophysique, Imagerie médicale. [bibtex-entry]



4. Nina Miolane. Geometric statistics for computational anatomy. Theses, COMUE Université Côte d'Azur (2015 - 2019), December 2016. Keyword(s): Statistics, Geometry, Medical imaging, Anatomy, Statistiques, Géométrie, Imagerie médicale, Anatomie. [bibtex-entry]



5. Maxime Sermesant. When Cardiac Biophysics Meets Groupwise Statistics: Complementary Modelling Approaches for Patient-Specific Medicine. Accreditation to supervise research, Université de Nice - Sophia Antipolis, June 2016. Keyword(s): machine learning, statistics, biophysics, cardiac modelling, modélisation cardiaque. [bibtex-entry]



6. Anant Suraj Vemuri. Inter-operative biopsy site relocalization in gastroscopy : application to oesophagus. Theses, Université Nice Sophia Antipolis, April 2016. Keyword(s): Gastro-intestinal endoscopy, Inter-operative relocalization, Electromagnetic tracking, Suivi électromagnétique, Relocalisation préopératoire, Endoscopie gastro-intestinale. [bibtex-entry]

1. Martino Alessandrini, Brecht Heyde, Sandro Queirós, Szymon Cygan, Maria Zontak, Oudom Somphone, Olivier Bernard, Maxime Sermesant, Hervé Delingette, Daniel Barbosa, Mathieu de Craene, Matthew O'Donnell, and Jan d'Hooge. Detailed Evaluation of Five 3D Speckle Tracking Algorithms Using Synthetic Echocardiographic Recordings. IEEE Transactions on Medical Imaging, 35(8):1915-1926, 2016. [bibtex-entry]



2. Chloé Audigier, Tommaso Mansi, Hervé Delingette, Saikiran Rapaka, Tiziano Passerini, Viorel Mihalef, Marie-Pierre Jolly, Raoul Pop, Michele Diana, Luc Soler, Ali Kamen, Dorin Comaniciu, and Nicholas Ayache. Comprehensive Pre-Clinical Evaluation of a Multi-physics Model of Liver Tumor Radiofrequency Ablation. International Journal of Computer Assisted Radiology and Surgery, December 2016. [bibtex-entry]



3. Nicholas Ayache. Medical Imaging Informatics: Towards a Personalized Computational Patient. IMIA Yearbook of Medical Informatics, 25(Suppl. 1):S8-S9, 2016. [bibtex-entry]



4. Nicholas Ayache and James Duncan. 20th anniversary of the medical image analysis journal (MedIA). Medical Image Analysis, 33:1-3, October 2016. [bibtex-entry]



5. Jan L. Bruse, Kristin Mcleod, Giovanni Biglino, Hopewell N. Ntsinjana, Claudio Capelli, Tain-Yen Hsia, Maxime Sermesant, Xavier Pennec, Andrew M. Taylor, and Silvia Schievano. A statistical shape modelling framework to extract 3D shape biomarkers from medical imaging data: assessing arch morphology of repaired coarctation of the aorta. BMC Medical Imaging, 16(1), May 2016. [bibtex-entry]



6. Jan Bruse, Hopewell Ntsinjana, Claudio Capelli, Giovanni Biglino, Kristin Mcleod, Maxime Sermesant, Xavier Pennec, Tain-Yen Hsia, Silvia Schievano, and Andrew Taylor. CMR-based 3D statistical shape modelling reveals left ventricular morphological differences between healthy controls and arterial switch operation survivors. Journal of Cardiovascular Magnetic Resonance, 18(S1), December 2016. [bibtex-entry]



7. Rocìo Cabrera-Lozoya, Benjamin Berte, Hubert Cochet, Pierre Jaïs, Nicholas Ayache, and Maxime Sermesant. Image-based Biophysical Simulation of Intracardiac Abnormal Ventricular Electrograms. IEEE Transactions on Biomedical Engineering, PP(99), 2016. Keyword(s): cardiac electrophysiology modelling, radiofrequency ablation planning, intracar-diac electrogram modelling, electroanatomical mapping. [bibtex-entry]



8. Radomir Chabiniok, Vicky Y. Wang, Myrianthi Hadjicharalambous, Liya Asner, Jack Lee, Maxime Sermesant, Ellen Kuhl, Alistair A. Young, Philippe Moireau, Martyn P. Nash, Dominique Chapelle, and David Nordsletten. Multiphysics and multiscale modelling, data-model fusion and integration of organ physiology in the clinic: ventricular cardiac mechanics. Interface Focus, 6(2), 2016. Keyword(s): translational cardiac modelling, patient-specific modelling, heart mechanics, cardiac mechanics, data-model fusion. [bibtex-entry]



9. Zhong Chen, Rocìo Cabrera-Lozoya, Jatin Relan, Manav Sohal, Anoop Shetty, Rashed Karim, Hervé Delingette, Jaswinder Gill, Kawal Rhode, Nicholas Ayache, Peter Taggart, Christopher Aldo Rinaldi, Maxime Sermesant, and Reza Razavi. Biophysical modelling predicts ventricular tachycardia inducibility and circuit morphology: A combined clinical validation and computer modelling approach. Journal of Cardiovascular Electrophysiology, 27(7):851-860, 2016. Keyword(s): Ventricular tachycardia, computer modelling, APD restitution, conductivity, cardiac magnetic resonance imaging. [bibtex-entry]



10. Nicolas Cordier, Hervé Delingette, Matthieu Lê, and Nicholas Ayache. Extended Modality Propagation: Image Synthesis of Pathological Cases. IEEE Transactions on Medical Imaging, PP(99), July 2016. Keyword(s): modality synthesis, medical image simulation, generative model, glioma, multi-atlas, patch-based. [bibtex-entry]



11. Nicolas Duchateau, Mathieu de Craene, Pascal Allain, Eric Saloux, and Maxime Sermesant. Infarct localization from myocardial deformation: Prediction and uncertainty quantification by regression from a low-dimensional space. IEEE Transactions on Medical Imaging, 35(10):2340-2352, 2016. Keyword(s): ultrasound, computer-aided diagnosis, dimensionality reduction, Index Terms-Myocardial infarct, pattern recognition & classification, delayed-enhancement, biomechanical modeling. [bibtex-entry]



12. Dan Gnansia, Thomas Demarcy, Clair Vandersteen, Charles Raffaelli, Nicolas Guevara, Hervé Delingette, and Nicholas Ayache. Optimal electrode diameter in relation to volume of the cochlea. European Annals of Otorhinolaryngology, Head and Neck Diseases, 133, Supplement 1:S66-S67, June 2016. Keyword(s): Computed tomography, Inner ear, Anatomy, Image processing, Electrode-array design, Soft surgery, Hearing preservation, Electrode-array, Cochlear implant. [bibtex-entry]



13. Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Fabrizio de Vico Fallani, Mario Chavez, Cyril Poupon, Andreas Hartmann, Nicholas Ayache, and Stanley Durrleman. Parsimonious Approximation of Streamline Trajectories in White Matter Fiber Bundles. IEEE Transactions on Medical Imaging, PP(99), 2016. Keyword(s): Visualization, Tractography, Registration, Dimensionality reduction, Connectivity analysis, Brain, Index Terms-Diffusion weighted imaging. [bibtex-entry]



14. Mehdi Hadj-Hamou, Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. Longitudinal Analysis of Image Time Series with Diffeomorphic Deformations: A Computational Framework Based on Stationary Velocity Fields. Frontiers in Neuroscience, 10(236):18, June 2016. Keyword(s): reproducible research, statistical analysis, diffeomorphism parametrized by stationary velocity fields, longitudinal study, deformation-based morphometry, non-linear registration. [bibtex-entry]



15. Bishesh Khanal, Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. A biophysical model of brain deformation to simulate and analyze longitudinal MRIs of patients with Alzheimer's disease. NeuroImage, 134:35-52, July 2016. Keyword(s): Alzheimer's disease, biophysical model, longitudinal MRIs simulation, simulation of atrophy, longitudinal modeling. [bibtex-entry]



16. Loïc Le Folgoc, Hervé Delingette, Antonio Criminisi, and Nicholas Ayache. Quantifying Registration Uncertainty with Sparse Bayesian Modelling. IEEE Transactions on Medical Imaging, PP(99), December 2016. Keyword(s): Automatic Relevance Determination, Reversible Jump, Sparse Bayesian Learning, Registration, Uncertainty Quantification, MCMC. [bibtex-entry]



17. Matthieu Lê, Hervé Delingette, Jayashree Kalpathy-Cramer, Elizabeth R Gerstner, Tracy Batchelor, Jan Unkelbach, and Nicholas Ayache. MRI Based Bayesian Personalization of a Tumor Growth Model. IEEE Transactions on Medical Imaging, 35(10):2329-2339, April 2016. Keyword(s): Monte Carlo, LBM, reaction-diffusion, glioblastoma, Index Terms-tumor growth, personalization, bayesian. [bibtex-entry]



18. Matthieu Lê, Hervé Delingette, Jayashree Kalpathy-Cramer, Elizabeth R Gerstner, Tracy Batchelor, Jan Unkelbach, and Nicholas Ayache. Personalized Radiotherapy Planning Based on a Computational Tumor Growth Model. IEEE Transactions on Medical Imaging, pp 11, 2016. Keyword(s): glioblastoma, segmentation, uncertainty, personalization, mor growth model, computational tu-, Index Terms-Radiotherapy planning. [bibtex-entry]



19. Matthieu Lê, Jan Unkelbach, Nicholas Ayache, and Hervé Delingette. Sampling Image Segmentations for Uncertainty Quantification. Medical Image Analysis, 34:42-51, December 2016. Note: Accepted for publication to the journal Elsevier Medical Image Analysis. Keyword(s): Segmentation, radiotherapy planning, uncertainty, brain tumor, Gaussian process. [bibtex-entry]



20. Nerea Mangado, Mario Ceresa, Nicolas Duchateau, Hans Martin Kjer, Sergio Vera, Hector Dejea Velardo, Pavel Mistrik, Rasmus R. Paulsen, Jens Fagertun, Jérôme Noailly, Gemma Piella, and Miguel Ángel González Ballester. Automatic model generation framework for computational simulation of cochlear implantation. Annals of Biomedical Engineering, 44(8):2453-2463, 2016. [bibtex-entry]



21. Hugo Talbot, Federico Spadoni, Christian Duriez, Maxime Sermesant, Stéphane Cotin, and Hervé Delingette. Interactive Training System for Interventional Electrocardiology Procedures. Medical Image Analysis, 8789:11-19, 2016. Keyword(s): Real-Time Electrophysiology, Interactive Simulation, Training Simulator, Endovascular Navigation. [bibtex-entry]



22. Anant S. Vemuri, Stéphane Nicolau, Adrien Sportes, Jacques Marescaux, Luc Soler, and Nicholas Ayache. Inter-Operative Biopsy Site Relocalization in Endoluminal Surgery. IEEE Transactions on Biomedical Engineering, 63(9):1862-1873, September 2016. Keyword(s): electromagnetic tracking, Barrett's Oesophagus, biopsy relocalization, gastro-intestinal (GI) endoscopy, Computer assisted intervention, video synchronization. [bibtex-entry]



23. Antoine Verger, Yalcin Yagdigul, Axel van Der Gucht, Sylvain Poussier, Eric Guedj, Louis Maillard, Grégoire Malandain, Gabriela Hossu, Renaud Fay, Gilles Karcher, and Pierre-Yves Marie. Temporal epilepsy lesions may be detected by the voxel-based quantitative analysis of brain FDG-PET images using an original block-matching normalization software. Annals of Nuclear Medicine, 30(4):272-278, May 2016. Keyword(s): Statistical parametric mapping, Spatial normalization, Mesial temporal lobe epilepsy, FDG-PET, Block-matching algorithm. [bibtex-entry]



24. Seigo Yamashita, Hubert Cochet, Frédéric Sacher, Saagar Mahida, Benjamin Berte, Darren Hooks, Jean-Marc Sellal, Nora Al Jefairi, Antonio Frontera, Yuki Komatsu, Han S Lim, Sana Amraoui, Arnaud Denis, Nicolas Derval, Maxime Sermesant, François Laurent, Mélèze Hocini, Michel Haïssaguerre, Michel Montaudon, and Pierre Jais. Impact of New Technologies and Approaches for Post--Myocardial Infarction Ventricular Tachycardia Ablation During Long-Term Follow-Up. Circulation. Arrhythmia and electrophysiology, 9(7), July 2016. Keyword(s): Myocardial infarction, Infarction, Heart failure, Catheter ablation, Ventricular tachycardia. [bibtex-entry]



25. Seigo Yamashita, Frédéric Sacher, Saagar Mahida, Benjamin Berte, Han S Lim, Yuki Komatsu, Sana Amraoui, Arnaud Denis, Nicolas Derval, François Laurent, Maxime Sermesant, Michel Montaudon, Mélèze Hocini, Michel Haïssaguerre, Pierre Jais, and Hubert Cochet. Image Integration to Guide Catheter Ablation in Scar-Related Ventricular Tachycardia. Journal of Cardiovascular Electrophysiology, 27(6):699 - 708, June 2016. Keyword(s): Imaging, MDCT, CMR, Ablation, Scar-related ventricular tachycardia. [bibtex-entry]



26. Nicolas Duchateau, Gemma Piella, Alejandro Frangi, and Mathieu de Craene. Learning pathological deviations from a normal pattern of myocardial motion: Added value for CRT studies?. In Guorong Wu, Dinggang Shen, and Mert Sabuncu, editors, Machine learning and medical imaging, 1st Edition, pages 365-382. Elsevier, 2016. [bibtex-entry]

1. Jan L. Bruse, Kristin Mcleod, Elena Cervi, Giovanni Biglino, T.-y Hsia, Maxime Sermesant, Xavier Pennec, Andrew Taylor, and Silvia Schievano. Discovering clusters in pathologic cardiac morphology: MR-based hierarchical 3D shape clustering of surgically repaired aortic arches. In Computer Assisted Radiology, 30th International Congress and Exhibition, Heidelberg, Germany, June 2016. [bibtex-entry]



2. Claire Cury, Marc M Lorenzi, David M Cash, Jennifer M Nicholas, Alexandre M Routier, Jonathan Rohrer, Sebastien M Ourselin, Stanley M Durrleman, and Marc M Modat. Spatio-Temporal Shape Analysis of Cross-Sectional Data for Detection of Early Changes in Neurodegenerative Disease. In Martin Reuter, Christian Wachinger, and Hervé Lombaert, editors, Lecture Notes in Computer Science (LNCS), volume 10126 of Spectral and Shape Analysis in Medical Imaging, Athens, Greece, pages 63 - 75, September 2016. Springer. Keyword(s): shape, parallel transport, FTD, spatio-temporal geodesic regression, thalamus. [bibtex-entry]



3. Thomas Demarcy, Clair Vandersteen, Dan Gnansia, Charles Raffaelli, Hervé Delingette, Nicholas Ayache, and Nicolas Guevara. Estimation de la position post-implantation cochléaire de l'électrode à partir d'images tomodensitométriques cliniques. In 123ème Congrès de la Société Française d'Oto-Rhino-Laryngologie et de Chirurgie de la Face et du Cou, Annales françaises d'Oto-rhino-laryngologie et de Pathologie Cervico-faciale, Paris, France, October 2016. Congrès de la Société Française d'Oto-Rhino-Laryngologie et de Chirurgie de la Face et du Cou. Keyword(s): Computed Tomography, Cochlear Implant. [bibtex-entry]



4. Thomas Demarcy, Clair Vandersteen, Charles Raffaelli, Dan Gnansia, Nicolas Guevara, Nicholas Ayache, and Hervé Delingette. Uncertainty Quantification of Cochlear Implant Insertion from CT Images. In Raj Shekhar, Stefan Wesarg, Miguel Angel Gonzalez Ballester, Klaus Drechsler, Yoshinobu Sato, Marius Erdt, Marius George Linguraru, and Cristina Oyarzun Laura, editors, Clinical Image-Based Procedures, volume 9958 of Lecture Notes in Computer Science, Athens, Greece, pages 27-35, October 2016. Springer. Keyword(s): shape modeling, uncertainty quantification, cochlear implant. [bibtex-entry]



5. Nicolas Duchateau, Mathieu de Craene, Pascal Allain, Eric Saloux, and Maxime Sermesant. Infarct localization from myocardial deformation: Prediction and uncertainty quantification by regression from a low-dimensional space. In GRIC - Journées Francophones de Radiologie, Paris, France, 2016. [bibtex-entry]



6. Sophie Giffard-Roisin, Lauren Fovargue, Jessica Webb, Roch Molléro, Jack Lee, Hervé Delingette, Nicholas Ayache, Reza Razavi, and Maxime Sermesant. Estimation of Purkinje Activation from ECG: an Intermittent Left Bundle Branch Block Study. In Lecture Notes in Computer Science, Lecture Notes in Computer Science, Athens, Greece, October 2016. Note: In press. Keyword(s): Purkinje System, Parameter Estimation, Forward EP Model, Electrophysiological Model, Electrophysiology. [bibtex-entry]



7. Shuman Jia, Loïc Cadour, Hubert Cochet, and Maxime Sermesant. STACOM-SLAWT Challenge: Left Atrial Wall Segmentation and Thickness Measurement Using Region Growing and Marker-Controlled Geodesic Active Contour. In LNCS, volume 10124 of LNCS, Athens, Greece, pages 211-219, October 2016. Springer. Keyword(s): region growing, cardiac computed tomography (CT), 3-dimensional image segmentation, left atrial wall thickness, atrial fibrillation, geodesic active contour. [bibtex-entry]



8. Stephanie Marchesseau, Nicolas Duchateau, and Hervé Delingette. Segmentation and registration coupling from short-axis Cine MRI: application to infarct diagnosis. In Lecture Notes in Computer Science, volume 10124 of Lecture Notes in Computer Science, Athens, Greece, pages 48-56, October 2016. Note: In press. Keyword(s): Infarct diagnosis, Registration, Segmentation, Regional Volumes. [bibtex-entry]



9. Pamela Moceri, Nicolas Duchateau, Delphine Baudouy, Sylvie Leroy, Priscille Bouvier, Elie Dan Schouver, Maxime Sermesant, and Emile Ferrari. Three-dimensional speckle tracking of the right ventricle: implications on survival in pulmonary hypertension. In European Society of Cardiology (ESC) Congress, volume 37 of European Heart Journal, Abstracts from the European Society of Cardiology (ESC) Congress, Rome, Italy, pages 994, August 2016. [bibtex-entry]



10. Roch Molléro, Xavier Pennec, Hervé Delingette, Nicholas Ayache, and Maxime Sermesant. A Multiscale Cardiac Model for Fast Personalisation and Exploitation. In MICCAI 2016, Lecture Notes in Computer Science, volume 9902 of MICCAI 2016, Lecture Notes in Computer Science, Athens, Greece, pages 174-182, October 2016. [bibtex-entry]



11. Marc-Michel Rohé, Roch Molléro, Maxime Sermesant, and Xavier Pennec. Highly Reduced Model of the Cardiac Function for Fast Simulation. In Image, Video, and Multidimensional Signal Processing Workshop (IVMSP), 2016 IEEE 12th, Image, Video, and Multidimensional Signal Processing Workshop (IVMSP), 2016 IEEE 12th, Bordeaux, France, pages 5, July 2016. IEEE. Keyword(s): Simulation 3D, Biomechanical Model, Reduction Order Model. [bibtex-entry]



12. Marc-Michel Rohé, Maxime Sermesant, and Xavier Pennec. Barycentric Subspace Analysis: a new Symmetric Group-wise Paradigm for Cardiac Motion Tracking. In MICCAI 2016, Lecture Notes in Computer Science, volume 9902 of MICCAI 2016, Lecture Notes in Computer Science, Athens, Greece, pages 300-307, October 2016. Keyword(s): Medical Image Analysis, Atlas Framework, Registration, Manifold atlas. [bibtex-entry]



13. Sergio Sanchez-Martinez, Nicolas Duchateau, Tamas Erdei, Gabor Kunszt, Anna Degiovanni, Erberto Carluccio, Alan Fraser, Gemma Piella, and Bart Bijnens. Machine-learning based diagnosis of heart failure with preserved ejection fraction: how much do we agree with the guidelines?. In EuroEcho-Imaging, European Heart Journal: Cardiovascular Imaging, Abstracts from the EuroEcho-Imaging congress, Leipzig, Germany, December 2016. Note: In press. [bibtex-entry]



14. Yitian Zhou, Mathieu de Craene, Maxime Sermesant, and Olivier Bernard. Phase-Based Registration of Cardiac Tagged MR Images by Incorporating Anatomical Constraints. In International Workshop on Statistical Atlases and Computational Models of the Heart, Athens, Greece, pages 39-47, October 2016. Keyword(s): Tag number constant constraint, Strain, Cardiac tagged MR. [bibtex-entry]



15. Yitian Zhou, Mathieu de Craene, Oudom Somphone, Maxime Sermesant, and Olivier Bernard. Generation of Realistic 4D Synthetic CSPAMM Tagged MR Sequences for Benchmarking Cardiac Motion Tracking Algorithms. In International Workshop on Simulation and Synthesis in Medical Imaging, Athens, Greece, pages 108-117, October 2016. [bibtex-entry]

1. Stephane Nicolau, Anant S. Vemuri, Luc Soler, and Jacques Marescaux. Anatomical site relocalisation using dual data synchronisation. 20160022125, United States, January 2016. [bibtex-entry]

1. Nicholas Ayache. Le patient numérique personnalisé : une révolution, April 2016. Note: Article publié par l'Académie des Sciences dans l'Humanité. [bibtex-entry]



2. Nina Miolane, Xavier Pennec, and Susan Holmes. Towards a unified bayesian geometric framework for template estimation in Computational Anatomy. International Society of Bayesian Analysis: World Meeting, June 2016. Note: Poster. Keyword(s): medical imaging, estimation, manifold, shape, template. [bibtex-entry]

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