inr%u -extrapolation [nearest|tozero]
| get or set extrapolation method
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inr%u -fill bg %v fg %v [2D|3D]
| Fill-in 2D or 3D regions of inrimage. Contours with fg color on a bg background are filled with fg value.
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inr%u -flip [X|Y|Z]
| flip along given direction
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inr%u -floating
| return true if inrimage type is floating point, false otherwise
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inr%u -glbounds [min %%v] [max %%v]
| get/set inrimage min and max grey level values
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inr%u -gradient [sigma %f] [2D|3D] [rec [marta|gaussian|deriche] | sobel] [dir ] [max] [lt %f]
Compute inrimage gradient either using recursive filters (rec with Marta, Deriche gaussian or Deriche step-edge approximation) or sobel masks (sobel). sigma represents filter standard deviation (rec) or filter size (sobel). A low thresholding is applied on resulting gradient image if lt option is specified. Only gradient extrema along gradient direction are kept with max. The dir option allow to get gradient vectors (dir vectors) or to generate a gradient directions map (as a 8-bits image whose voxel value index a direction vector among 180 vectors sampling all directions, dir sample).
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inr%u -histogram
| returns the image histogram
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inr%u -interpolation [nearest|trilin]
| get or set interpolation method
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inr%u -isolateRegion
zero voxel outside region (from org to end or centered on center and with given size)
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inr%u -kind
| returns the name of the object kind associated with a given object
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inr%u -laplacian [sigma %f] [marta|gaussian|deriche]
| Compute inrimage laplacian using recursive filters.
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inr%u -logic < inr%u | not>
apply given logical operator
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inr%u -mel inr%u [ixo %u] [iyo %u] [izo %u] [ixi %i] [iyi %i] [izi %i] [idx %u] [idy %u] [idz %u]
| mel two inrimages (ixi, iyi, izi is input image block corner, and idx, idy, idz its size; ixo, iyo, izo is output image block corner).
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inr%u -morpho [dil|ero|close|open|tophat|invtophat|grad|lowgrad|uppgrad|median] [ [con <4|6|8|10|18|26>] | [struct %s] ] [i %u] [binary | greylevel]
| Binarize inrimage and apply given morphological operator.
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inr%u -name %s
| get/set image name
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inr%u -noise [white mean=%f|gaussian|us] [dev %f] [org %u %u %u | center %u %u %u] [end %u %u %u | size %u %u %u]
| Creates a noisy box inside an inrimage. The output is either a white gaussian noise with given mean (white), a gaussian noise added to image (gaussian, default) or an ultrasound like multiplicative noise (us)
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inr%u -oversample
Oversample an image so that its new size is xdim*ydim*zdim. New size should be greater thant oler one.
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inr%u -recfilter [sigma %f] [marta|gaussian|deriche]
Apply recursive filter on inrimage (with Marta, Deriche gaussian or Deriche step-edge approximation). Available filters are gaussian (X or Y or Z or 2D or 3D), first derivative X, Y or Z-wise and second derivative X, Y or Z-wise.
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inr%u -redraw
| force inrimage to be redisplayed in any viewer it appears
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inr%u -region [%d %d %d %d %d %d]
| get or set region in which operations should be performed method. not used by all operations. negative values mean lower or higher bound, as appropriate.
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inr%u -resample
Resample an image so that its new size is xdim*ydim*zdim. Under sampled images are approximated by picking a trilinearly interpolated value in the originale image (i.e. there is no voxel averaging computation).
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inr%u -save %s
| save image (using image name if no new name is given)
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inr%u -size
| get image size
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inr%u -slicecams
| return a list of slicecams associated with the image
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inr%u -split
| split a vectorial inrimage in as many scalar inrimages as vector dimensions and return list of created inrimages
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inr%u -switch
switch two directions
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inr%u -threshold [min %v] [max %v] [bg %v] [fg %v]
| Threshold inrimage between min and max values. Voxel between min an max included are set to fg value. Other voxels are set to bg value.
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inr%u -transform [nearest|trilinear|cspline] [2D|3D] <-mat %s> [-def %s %s %s] [-inv] [-dim %u]
| Resample an image with a mat4 and a deformation field. Resampling may be nearest, trilinear, cspline and in 2D or 3D. The -inv option allows to resample with the inversed matrix. The matrix and the displacement field are allways supposed to go from the result image to the input image
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inr%u -type [[cast|scale] <8bits|16bits|s16bits|32bits|s32bits|64bits|s64bits|float|double|rgb|rgba|floatVector|doubleVector>]
| get/set inrimage type
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inr%u -undersample
undersample image with given step in X, Y and Z direction, or with stepX step in X direction, stepY step in Y direction, stepZ step in Z direction.
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inr%u -vectorial
| return true if inrimage type is vectorial, false otherwise
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inr%u -voxel [%f %f %f]
| get/set inrimage voxels size
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inr%u -windowing [min %v] [max %v]
| Creates an unsigned char image after Windowing the image between min and max values
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inr%u -zeroRegion
zero voxel inside region (from org to end or centered on center and with given size)
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