Publication list of Claude Pasquier

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Claude Pasquier

INRIA Sophia Antipolis

2004 route des lucioles - BP 93

06902 Sophia Antipolis - France

Phone: +33 (0)4 92 38 71 64

Fax: +33 (0)4 92 38 76 44

e-mail: Claude.Pasquier@sophia.inria.fr

Summary of Bio-informatic papers on PubMed

RESEARCH PAPERS AND PUBLICATIONS

INTERNATIONAL JOURNALS

Iliopoulos I., Tsoka S., Andrade M., Enright A., Carroll M., Poullet P., Promponas V., Liakopoulos T., Palaios G., Pasquier C., Hamodrakas S., Tamames J., Yagnik A., Tramontano A., Devos D., Blaschke C., Valencia A., Brett D., Martin D., Leroy C., Rigoustos I., Sander C. & Ouzounis C. Evaluation of annotation strategies using an entire genome sequence. Submitted for publication.

Pasquier C. Promponas V.J. & Hamodrakas S.J. PRED-CLASS: Cascading Neural Network for generalized protein classification and genome-wide applications. Proteins. 2001 Aug 15;44(3):361-9.

Liakopoulos T.D. Pasquier C. & Hamodrakas S.J. A novel tool for the prediction of transmembrane protein topology based on a statistical analysis of the SwissProt database: the OrienTM algorithm. Protein Eng. 2001 Jun;14(6):387-90.

Pasquier C. & Hamodrakas S.J. An hierarchical artificial neural network system for the classification of transmembrane proteins. Protein Eng. 1999 Aug;12(8):631-4.

Pasquier C., Promponas V.J., Palaios G.A., Hamodrakas J.S. & Hamodrakas S.J. A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm. Protein Eng. 1999 May;12(5):381-5.

Promponas V.J., Palaios G.A., Pasquier C., Hamodrakas J.S & Hamodrakas J.S. CoPreTHi: A Web tool which combines transmembrane protein segment prediction methods. In Silico Biol. 1999;1(3):159-62.

Pasquier C., Promponas V.J., Varvayannis N.J. & Hamodrakas S.J. A Web server to locate periodicities in a sequence. Bioinformatics. 1998;14(8):749-50.

NATIONAL JOURNALS

Attali I., Courbis C., Degenne P., Fau A., Fillon J., Held C., Parigot D. & Pasquier C. L’apport des technologies XML et Objets pour un générateur d’environnements : SmartTools. Submitted at a special issue of "Objet".

INTERNATIONAL CONFERENCES

Attali I., Courbis C., Degenne P., Fau A., Fillon J., Held C., Parigot D. & Pasquier C. Aspect and XML-oriented Semantic Framework Generator: SmartTools. Submitted at ICSE 2002.

Attali I. Courbis C. Degenne P. Fau A. Fillon J. Parigot D. Pasquier C. & Sacerdoti-Cohen C. SmartTools: a development environment generator based on XML technologies. In XML Technologies and Software Engineering, Toronto, Canada, ICSE'2001, workshop proceedings.

Attali I. Courbis C. Degenne P. Fau A. Parigot D. & Pasquier C. SmartTools: a Generator of Interactive Environments Tools, In Reinhard Wilhelm (Ed.): Compiler Construction, 10th International Conference, CC 2001 Held as Part of the Joint European Conferences on Theory and Practice of Software, ETAPS 2001 Genova, Italy, April 2-6, 2001, Proceedings. Lecture Notes in Computer Science 2027 Springer 2001, ISBN 3-540-41861-X.

Pasquier C. & Théry L. A Distributed Editing Environment for XML Documents, June 2000, Proceedings of the first ECOOP Workshop on XML and Object Technology, Cannes, France.

Pasquier C. BIBLE : a system for Design and Management of Context-Controlled Documents, October 92, in PODP'92 : Proceeding of the first international conference on Principles of Document Processing, Washington D.C.

NATIONAL CONFERENCES

Liakopoulos T., Harkiolakis N., Promponas V., Hamodrakas J.S., Papandreou N.C., Iconomidou V., Pasquier C., Papandreou N., Tzafestas E., Tzafestas S., Eliopoulos E. & Hamodrakas S.J. DAM-BIO: Bioinformatics internet workbench for protein analysis. New modules and applications to biological problems. Hellenic Society for Biological Sciences, 23rd Annual Meeting, Chios 2001.

Liakopoulos T. Palaios G.A. Promponas V.I. Hamodrakas J.S. Pasquier C. & Hamodrakas S.J. A workbench for computational analysis of protein sequence and structure on the Internet, June 2000, 22nd Conference of the Hellenic Society for Biological Sciences, Skiathos, Greece.

Liakopoulos T. Pasquier C. & Hamodrakas S.J. OrienTM: A novel method to predict transmembrane protein topology, June 1999, 21nd Conference of the Hellenic Society for Biological Sciences, Syros, Greece.

Pasquier C., Promponas V.I., Varvayannis N.J. & Hamodrakas S.J. A web interface for FT: a tool dedicated to the study of periodicities in sequences. May 1998. Proceeding of the 20^th Panhellenic meeting, Samos, Greece.

Promponas V.J., Palaios G.A., Pasquier C., Hamodrakas J.S. & Hamodrakas S.J. CoPreTHi: a program to combine the results of transmembrane protein segment prediction methods. May 1998. Proceeding of the 20th Panhellenic meeting, Samos, Greece.

Pasquier C. Projet d'utilisation de la norme ODA à la CDC. Échange et génération de documents, December 91, Proceeding of the symposium gestion des documents électroniques, Caen.

INTERNAL REPORTS

Pasquier C. Gestion et conception de documents structurés par le contexte, July 94, Ph.D. dissertation, University of Nice.

Pasquier C. La gestion de documents électroniques : concepts et perspectives, November 93, 10th symposium Informatique CDC.

Pasquier C. Héritage et modularité dans une représentation objet des documents structurés, June 93, Technical report Informatique CDC.

Pasquier C. An extension of ODA for customized documents, April 92, Technical report Informatique CDC/I3S.

Pasquier C. BIBLE : un système pour la conception de documents adaptables, Juillet 91, Technical report Informatique CDC.

Pasquier C. La génération des documents personnalisés, February 91, in CYCLOPE, the newspaper of Informatique CDC.

Pasquier C. Le projet BIBLE : gestion et génération de documents, December 90, R&D annual report, pages 54-58, Informatique CDC.