Master MVA 2016-2017 First Semester : Introduction to Medical Image Analysis

Hervé Delingette
Equipe Asclepios
2004, route des Lucioles B.P. 93
06902 Sophia Antipolis Cedex
http://www-sop.inria.fr/asclepios
04 92 38 77 64
Herve.Delingette@inria.fr

Xavier Pennec
Equipe Asclepios
2004, route des Lucioles B.P. 93
06902 Sophia Antipolis Cedex
http://www-sop.inria.fr/asclepios
04 92 38 76 64
xavier.pennec@inria.fr

Course Objectives

The course is an introduction to medical image analysis, in particular image registration and image segmentation.
It is complemented by a course at the second semester detailing some advanced techniques in statistical and mechanical modeling for computational anatomy and physiology.

Liste of courses and slides (updated in real-time)

Resources

Articles pour le choix du projet

  • Quentin Chan Wai Nam + Clara Bonnet + Romain Girard : Efficient globally optimal segmentation of cells in fluorescence microscopy images using level sets and convex energy functionals by Bergeest and Rohr.
  • Simon Lebastard + Thomas Baz : Estimating A Reference Standard Segmentation with Spatially Varying Performance Parameters: Local MAP STAPLE by Olivier Commowick, Alireza Akhondi-Asl, Simon K. Warfield
  • Lea Naccache + Esther Ouakrat + David Sabbagh : A Deep Cascade of Convolutional Neural Networks for MR Image Reconstruction
  • Mariem MEZGHANNI et Cyrine CHTOUROU : Adaptive multi-level conditional random fields for detection and segmentation of small enhanced pathology in medical images by Zahra Karimaghaloo, Douglas L. Arnold et Tal Arbel.
  • Sharone Dayan et Alexandre Attia : "A Combined Deep-Learning and Deformable-Model Approach to Fully Automatic Segmentation of the Left Ventricle in Cardiac MRI” de Avendi et al.
  • James von Albade et Paul Jehanno) : "Finite-Dimensional Lie Algebras for Fast Di?eomorphic Image Registration," écrit par Zhang et Fletcher.
  • Quentin Leroy et Bastien Ponchon : "Unsupervised domaion adaptation in brain lesion segmentation with adversarial networks"" by Kamnitsas et al.
  • Mihai Dusmanu et Anna Song : "Spectral Demons" by H. Lombaert
  • Adèle Gillier, Victor Sanh et Margot Barbet : "Spatially Varying Color Distributions for Interactive Multilabel Segmentation" by Claudia Nieuwenhuis and Daniel Cremers.
  • Mhamed Hajaiej, Alaa Eddine Mahi et Akrem Bahri : " Image Segmentation with One Shape Prior – A Template-Based Formulation" by S Chen, D Cremers, RJ Radke