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Publications of Xavier Pennec

Books and proceedings

  1. Xavier Pennec and Sarang Joshi, editors. Proceedings of the Second International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability, New York, USA, September 2008. [bibtex-entry]


  2. Xavier Pennec and Sarang Joshi, editors. Proceedings of the First International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability, Copenhagen, Denmark, October 2006. [bibtex-entry]


Thesis

  1. Xavier Pennec. Statistical Computing on Manifolds for Computational Anatomy. Habilitation à diriger des recherches, Université Nice Sophia-Antipolis, December 2006. Keyword(s): Tensors, regularization, PDE, geometry, Riemannian geometry, Registration, statistics, manifolds. [bibtex-entry]


  2. Xavier Pennec. L'incertitude dans les problèmes de reconnaissance et de recalage -- Applications en imagerie médicale et biologie moléculaire. Thèse de sciences (PhD thesis), Ecole Polytechnique, Palaiseau (France), December 1996. Keyword(s): registration, matching, statistics, validation, geometry, Riemannian geometry, medical images, protein structure. [bibtex-entry]


Articles in journal or book chapters

  1. Xavier Pennec and Pierre Fillard. Statistical computing on non-linear spaces for computational anatomy. In N. Paragios, J. Duncan, and Nicholas Ayache, editors, Biomedical Image Analysis: Methodologies and Applications. Springer, 2010. Note: To appear. [bibtex-entry]


  2. Pierre Fillard, Xavier Pennec, Paul M. Thompson, and Nicholas Ayache. Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines. NeuroImage, 2010. Note: Accepted for publication. [bibtex-entry]


  3. C. Germain-Renaud, V. Breton, P. Clarysse, B. Delhay, Y. Gaudeau, T. Glatard, E. Jannot, Y. Legré, Johan Montagnat, J.-M. Moureau, A. Osorio, Xavier Pennec, J. Schaerer, and R. Texier. Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine, and Healthcare, chapter Ch.19 - Grid Analysis of Radiological Data. Cannataro, IGI Global edition, 2009. [bibtex-entry]


  4. Nicholas Ayache, Olivier Clatz, Hervé Delingette, Grégoire Malandain, Xavier Pennec, and Maxime Sermesant. Asclepios: a Research Project-Team at INRIA for the Analysis and Simulation of Biomedical Images. In Y. Bertot, G. Huet, J.-J. Lévy, and G. Plotkin, editors, From semantics to computer science: essays in honor of Gilles Kahn, pages 415-436. Cambridge University Press, 2009. [bibtex-entry]


  5. Vincent Arsigny, Olivier Commowick, Nicholas Ayache, and Xavier Pennec. A Fast and Log-Euclidean Polyaffine Framework for Locally Linear Registration. J. of Math. Imaging and Vision (JMIV), 33(2):222-238, 2009. [bibtex-entry]


  6. Caroline Brun, Natasha Lepore, Xavier Pennec, Agatha D Lee, Marina Barysheva, Sarah K Madsen, Christina Avedissian, Yi-Yu Chou, Greig I. de Zubicaray, Katie McMahon, Margaret Wright, Arthur W. Toga, and Paul M. Thompson. Mapping the Regional Influence of Genetics on Brain Structure Variability - A Tensor-Based Morphometry Study. NeuroImage, 48(1):37-49, October 2009. [bibtex-entry]


  7. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Statistical Models on Sets of Curves and Surfaces based on Currents. Medical Image Analysis, 13(5):793-808, October 2009. [bibtex-entry]


  8. Heike Hufnagel, Jan Ehrhardt, Xavier Pennec, Nicholas Ayache, and Heinz Handels. Computation of a Probabilistic Statistical Shape Model in a Maximum-a-posteriori Framework. Methods of Information in Medicine, 48(4):314-319, 2009. [bibtex-entry]


  9. S. Nicolau, Xavier Pennec, Luc Soler, X. Buy, A. Gangi, Nicholas Ayache, and J. Marescaux. An Augmented Reality System for Liver Thermal Ablation: Design and Evaluation on Clinical Cases. Medical Image Analysis, 13(3):494-506, June 2009. [bibtex-entry]


  10. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Diffeomorphic Demons: Efficient Non-parametric Image Registration. NeuroImage, 45(1, Supp.1):S61-S72, March 2009. Note: PMID: 19041946. [bibtex-entry]


  11. Boon Thye Thomas Yeo, Tom Vercauteren, Pierre Fillard, Jean-Marc Peyrat, Xavier Pennec, Polina Golland, Nicholas Ayache, and Olivier Clatz. DT-REFinD: Diffusion Tensor Registration with Exact Finite-Strain Differential. IEEE Transactions on Medical Imaging, 28(12):1914-1928, December 2009. [bibtex-entry]


  12. Ender Konukoglu, Xavier Pennec, Olivier Clatz, and Nicholas Ayache. Tumor Growth Modeling in Oncological Image Analysis. In I. Bankman, editor, Handbook of Medical Image Processing and Analysis - New edition, chapter 18, pages 297-307. Academic Press, December 2008. Note: ISBN-13: 978-0-12-373904-9. [bibtex-entry]


  13. X. Pennec. Statistical computing on manifolds: from Riemannian geometry to computational anatomy. In Emerging Trends in Visual Computing, volume 5416 of LNCS, pages 347-386. Springer, 2008. [bibtex-entry]


  14. Xavier Pennec, Nicholas Ayache, and Jean-Philippe Thirion. Landmark-based registration using features identified through differential geometry. In I. Bankman, editor, Handbook of Medical Image Processing and Analysis - New edition, chapter 34, pages 565-578. Academic Press, December 2008. Note: ISBN-13: 978-0-12-373904-9. Keyword(s): registration, matching, validation, uncertainty. [bibtex-entry]


  15. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, and Nicholas Ayache. Articulated Spine Models for 3D Reconstruction from Partial Radiographic Data. IEEE Transactions on Biomedical Engineering, 55(11):2565-2574, November 2008. Note: PMID: 18990626. [bibtex-entry]


  16. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, and Nicholas Ayache. Geometric Variability of the Scoliotic Spine using Statistics on Articulated Shape Models. IEEE Transactions on Medical Imaging, 27(4):557-568, 2008. Note: PMID: 18390352. [bibtex-entry]


  17. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, and Nicholas Ayache. Principal Deformations Modes of Articulated Models for the Analysis of 3D Spine Deformities. Electronic Letters on Computer Vision and Image Analysis, 7(4):13-31, December 2008. [bibtex-entry]


  18. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Paul Thompson, and Nicholas Ayache. Inferring brain variability from diffeomorphic deformations of currents: an integrative approach. Medical Image Analysis, 12(5):626-637, 2008. Note: PMID: 18658005. [bibtex-entry]


  19. Tristan Glatard, Johan Montagnat, Diane Lingrand, and Xavier Pennec. Flexible and efficient workflow deployment of data-intensive applications on GRIDS with MOTEUR. International Journal of High Performance Computing Applications, 3(22):347-360, August 2008. Note: Special issue on Workflow Systems in Grid Environments. [bibtex-entry]


  20. H. Hufnagel, X. Pennec, J. Ehrhardt, N. Ayache, and H. Handels. Generation of a Statistical Shape Model with Probabilistic Point Correspondences and EM-ICP. International Journal for Computer Assisted Radiology and Surgery (IJCARS), 2(5):265-273, March 2008. [bibtex-entry]


  21. Johan Montagnat, Tristan Glatard, Isabel Campos Plasencia, Francisco Castejon, Xavier Pennec, Giuliano Taffoni, Vladimir Voznesensky, and Claudio Vuerli. Workflow-based data parallel applications on the EGEE production grid infrastructure. Journal of Grid Computing (JGC), 6(4):369-383, December 2008. [bibtex-entry]


  22. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Geometric Means in a Novel Vector Space Structure on Symmetric Positive-Definite Matrices. SIAM Journal on Matrix Analysis and Applications, 29(1):328-347, 2007. Keyword(s): DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics. [bibtex-entry]


  23. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Kiralee M. Hayashi, Paul M. Thompson, and Nicholas Ayache. Measuring Brain Variability by Extrapolating Sparse Tensor Fields Measured on Sulcal Lines. Neuroimage, 34(2):639-650, January 2007. Note: Also as INRIA Research Report 5887, April 2006. PMID: 17113311. [bibtex-entry]


  24. Pierre Fillard, Xavier Pennec, Vincent Arsigny, and Nicholas Ayache. Clinical DT-MRI Estimation, Smoothing and Fiber Tracking with Log-Euclidean Metrics. IEEE Transactions on Medical Imaging, 26(11):1472-1482, November 2007. Note: PMID: 18041263. [bibtex-entry]


  25. Jean-Marc Peyrat, Maxime Sermesant, Xavier Pennec, Hervé Delingette, ChenYang Xu, Eliot R. McVeigh, and Nicholas Ayache. A Computational Framework for the Statistical Analysis of Cardiac Diffusion Tensors: Application to a Small Database of Canine Hearts. IEEE Transactions on Medical Imaging, 26(11):1500-1514, November 2007. Note: PMID: 18041265. [bibtex-entry]


  26. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Log-Euclidean Metrics for Fast and Simple Calculus on Diffusion Tensors. Magnetic Resonance in Medicine, 56(2):411-421, August 2006. Note: PMID: 16788917. Keyword(s): DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics. [bibtex-entry]


  27. Hervé Delingette, Xavier Pennec, Luc Soler, Jacques Marescaux, and Nicholas Ayache. Computational Models for Image Guided, Robot-Assisted and Simulated Medical Interventions. Proceedings of the IEEE, 94(9):1678- 1688, September 2006. [bibtex-entry]


  28. Xavier Pennec. Intrinsic Statistics on Riemannian Manifolds: Basic Tools for Geometric Measurements. Journal of Mathematical Imaging and Vision, 25(1):127-154, July 2006. Note: A preliminary appeared as INRIA RR-5093, January 2004. Keyword(s): Fréchet means, Statistics, Lie groups, Riemannian geometry. [bibtex-entry]


  29. Xavier Pennec, Pierre Fillard, and Nicholas Ayache. A Riemannian Framework for Tensor Computing. International Journal of Computer Vision, 66(1):41-66, January 2006. Note: A preliminary version appeared as INRIA Research Report 5255, July 2004. Keyword(s): Tensors, regularization, PDE, geometry, Riemannian geometry. [Abstract] [bibtex-entry]


  30. Tom Vercauteren, Aymeric Perchant, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy. Medical Image Analysis, 10(5):673-692, October 2006. Note: Annual Medical Image Analysis (MedIA) Best Paper Award 2006. PMID: 16887375. [bibtex-entry]


  31. Xavier Pennec, Alexis Roche, Pascal Cathier, and Nicholas Ayache. Non-Rigid MR/US Registration for Tracking Brain Deformations. In R.S. Blum and Zh. Liu, editors, Multi-Sensor Image Fusion and Its Applications, volume 26 of Signal Processing and Communications, chapter 4, pages 107-143. CRC Press - Taylor and Francis, July 2005. Keyword(s): registration, matching, ultrasound, motion tracking, deformations, magnetic resonance, correlation ratio, robust estimation, multimodal. [bibtex-entry]


  32. Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Polyrigid and Polyaffine Transformations: a Novel Geometrical Tool to Deal with Non-Rigid Deformations - Application to the registration of histological slices. Medical Image Analysis, 9(6):507-523, December 2005. Note: PMID: 15948656. Keyword(s): Non-rigid registration, Histological slices, Polyaffine transformations, Ordinary differential equations. [bibtex-entry]


  33. C. Germain, V. Breton, P. Clarysse, Y. Gaudeau, T. Glatard, E. Jeannot, Y. Legré, C. Loomis, I. Magnin, J. Montagnat, J.-M. Moureau, A. Osorio, X. Pennec, and R. Texier. Grid-Enabling Medical Image Analysis. Journal of Clinical Monitoring and Computing, 19(4-5):339-349, October 2005. Note: PMID: 16328948. [bibtex-entry]


  34. Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, and Nicholas Ayache. An augmented reality system to guide radio-frequency tumor ablation. Computer Animation and Virtual World (previously the Journal of Visualization & Computer Animation), 16(1):1-10, 2005. [bibtex-entry]


  35. Xavier Pennec. Recaler pour mieux soigner. Pour la science, (338):126-131, December 2005. [bibtex-entry]


  36. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. A Grid Service for the Interactive Use of a Parallel Non-Rigid Registration Algorithm of Medical Images. Methods of Information in Medicine, 44(2), 2005. Note: PMID: 15924183. Keyword(s): grid service, registration, non-rigid, parallel. [bibtex-entry]


  37. Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, Hervé Delingette, Didier Mutter, and Jacques Marescaux. Traitements d'images médicales pour la planification, la simulation et l'aide intra-opératoire des actes chirurgicaux. In M. Faupel, P. Smigielski, and R. Grzymala, editors, Imagerie et Photonique pour les sciences du vivant et la médecine, pages 19-31. Edition Fontis Media, 2004. Note: ISBN 2-88476-005-9. [bibtex-entry]


  38. Miguel Angel González Ballester, Xavier Pennec, Marius George Linguraru, and Nicholas Ayache. Generalized Image Models and Their Application as Statistical Models of Images. Medical Image Analysis, 8(3):361-369, September 2004. Note: PMID: 15450229. [bibtex-entry]


  39. Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, Hervé Delingette, and Jacques Marescaux. Traitement d'images médicales pour la planification, la simulation et l'aide intra-opératoire des actes chirurgicaux. La Revue de l'Electricité et de l'Electronique, pp 64-71, janvier 2004. [bibtex-entry]


  40. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Grid Powered Nonlinear Image Registration with Locally Adaptive Regularization. Medical Image Analysis, 8(3):325-342, September 2004. Note: PMID: 15450226. Keyword(s): non-rigid registration, adaptive regularization, grid, parallel. [bibtex-entry]


  41. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Grid-Enabled Non-Rigid Registration of Medical Images. Parallel Processing Letters, 14(2):197-216, 2004. Keyword(s): grid, non-rigid registration, parallel, cluster. [bibtex-entry]


  42. Pascal Cachier, Eric Bardinet, Didier Dormont, Xavier Pennec, and Nicholas Ayache. Iconic Feature Based Nonrigid Registration: The PASHA Algorithm. Comp. Vision and Image Understanding, 89(2-3):272-298, Feb.-march 2003. Note: Special Issue on Nonrigid Registration. Keyword(s): registration, matching, similarity measures, deformations. [bibtex-entry]


  43. Xavier Pennec, Pascal Cachier, and Nicholas Ayache. Tracking Brain Deformations in Time-Sequences of 3D US Images. Pattern Recognition Letters, 24(4-5):801-813, February 2003. Note: Special Issue on Ultrasonic Image Processing and Analysis. Keyword(s): registration, matching, ultrasound, motion tracking, deformations. [bibtex-entry]


  44. Maxime Sermesant, Clément Forest, Xavier Pennec, Hervé Delingette, and Nicholas Ayache. Deformable biomechanical models: Application to 4D cardiac image analysis. Medical Image Analysis, 7(4):475-488, December 2003. Note: PMID: 14561552. [bibtex-entry]


  45. P. Jannin, J.M. Fitzpatrick, D.J. Hawkes, X. Pennec, R. Shahidi, and M.W. Vannier. Validation of Medical Image Processing in Image-guided Therapy. IEEE Trans. on Medical Imaging, 21(12):1445-1449, December 2002. Note: PMID: 12588028. [bibtex-entry]


  46. Sébastien Ourselin, Alexis Roche, Gérard Subsol, Xavier Pennec, and Nicholas Ayache. Reconstructing a 3D Structure from Serial Histological Sections. Image and Vision Computing, 19(1-2):25-31, January 2001. Keyword(s): registration, matching, histology. [bibtex-entry]


  47. Alexis Roche, Xavier Pennec, Grégoire Malandain, and Nicholas Ayache. Rigid Registration of 3D Ultrasound with MR Images: a New Approach Combining Intensity and Gradient Information. IEEE Transactions on Medical Imaging, 20(10):1038-1049, October 2001. Note: PMID: 11686439. Keyword(s): registration, ultrasound, magnetic resonance, correlation ratio, robust estimation, multimodal. [Abstract] [bibtex-entry]


  48. Xavier Pennec, Nicholas Ayache, and Jean-Philippe Thirion. Landmark-based registration using features identified through differential geometry. In I. Bankman, editor, Handbook of Medical Imaging, chapter 31, pages 499-513. Academic Press, September 2000. Keyword(s): registration, matching, validation, uncertainty. [bibtex-entry]


  49. Xavier Pennec. Toward a generic framework for recognition based on uncertain geometric features. Videre: Journal of Computer Vision Research, 1(2):58-87, 1998. Keyword(s): registration, matching, uncertainty. [bibtex-entry]


  50. Xavier Pennec and Nicholas Ayache. A geometric algorithm to find small but highly similar 3D substructures in proteins. Bioinformatics, 14(6):516-522, 1998. Note: PMID: 9694990. Keyword(s): registration, matching, protein structure. [bibtex-entry]


  51. Xavier Pennec and Nicholas Ayache. Uniform distribution, distance and expectation problems for geometric features processing. Journal of Mathematical Imaging and Vision, 9(1):49-67, July 1998. Note: A preliminary version appeared as INRIA Research Report 2820, March 1996. Keyword(s): statistics, geometry, Riemannian geometry. [bibtex-entry]


  52. André Guéziec, Xavier Pennec, and Nicholas Ayache. Medical Image Registration using Geometric Hashing. IEEE Computational Science & Engineering, special issue on Geometric Hashing, 4(4):29-41, 1997. Note: Oct-Dec. Keyword(s): registration, matching. [bibtex-entry]


  53. Xavier Pennec and Jean-Philippe Thirion. A Framework for Uncertainty and Validation of 3D Registration Methods based on Points and Frames. Int. Journal of Computer Vision, 25(3):203-229, December 1997. Keyword(s): registration, matching, uncertainty, statistics, validation. [bibtex-entry]


  54. J. West, J. M. Fitzpatrick, M. Y. Wang, B. M. Dawant, C. R. Maurer, Jr., R. M. Kessler, R. J. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes, P. Suetens, D. Vandermeulen, P. A. van den Elsen, S. Napel, T. S. Sumanaweera, B. Harkness, P. F. Hemler, D. L. G. Hill, D. J. Hawkes, C. Studholme, J. B. A. Maintz, M. A. Viergever, G. Malandain, X. Pennec, M. E. Noz, G. Q. Maguire, Jr., M. Pollack, C. A. Pelizzari, R. A. Robb, D. Hanson, and R. P. Woods. Comparison and evaluation of retrospective intermodality brain image registration techniques. Journal of Computer Assisted Tomography, 21(4):554-566, 1997. Keyword(s): registration, matching, multimodal, validation, uncertainty. [Abstract] [bibtex-entry]


Conference articles

  1. Stanley Durrleman, Pierre Fillard, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. A Statistical Model of White Matter Fiber Bundles based on Currents. In Jerry L. Prince, Dzung L. Pham, and Kyle J. Myers, editors, Proceedings of Information Processing in Medical Imaging (IPMI'09), volume 5636 of LNCS, pages 114-125, 2009. Note: PMID: 19694257. [bibtex-entry]


  2. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Guido Gerig, and Nicholas Ayache. Spatiotemporal Atlas Estimation for Developmental Delay Detection in Longitudinal Datasets. In Guang-Zhong Yang, David Hawkes, Daniel Rueckert, Alison Noble, and Chris Taylor, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'09), Part I, volume 5761 of Lecture Notes in Computer Science, London, UK, pages 297-304, September 2009. Springer. [bibtex-entry]


  3. V. Gorbunova, Stanley Durrleman, P. Lo, Xavier Pennec, and M. de Bruijne. Curve- and surface-based registration of lung CT images via currents. In M. Brown, M. de Bruijne, B. van Ginneken, A. Kiraly, J.M. Kuhnigk, C. Lorenz, J.R. McClelland, K. Mori, A.P. Reeves, and J. Reinhardt, editors, Proc. of Second International Workshop on Pulmonary Image Analysis, London United Kingdom, pages 15-25, 2009. [bibtex-entry]


  4. Heike Hufnagel, Jan Ehrhardt, Xavier Pennec, and Heinz Handels. Application of a Probabilistic Statistical Shape Model to Automatic Segmentation. In World Congress on Medical Physics and Biomedical Engineering, WC 2009, München, 2009. [bibtex-entry]


  5. Heike Hufnagel, Jan Ehrhardt, Xavier Pennec, Alexander Schmidt-Richberg, and Heinz Handels. Level Set Segmentation Using a Point-Based Statistical Shape Model Relying on Correspondence Probabilities. In Proc. of MICCAI Workshop Probabilistic Model for Medical Image Analysis (PMMIA'09), 2009. [bibtex-entry]


  6. Tommaso Mansi, Stanley Durrleman, Boris Bernhardt, Maxime Sermesant, Hervé Delingette, Ingmar Voigt, Philipp Lurz, Andrew M Taylor, Julie Blanc, Younes Boudjemline, Xavier Pennec, and Nicholas Ayache. A Statistical Model of Right Ventricle in Tetralogy of Fallot for Prediction of Remodelling and Therapy Planning. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'09), volume 5761 of Lecture Notes in Computer Science, London, UK, pages 214-221, September 2009. Springer. [bibtex-entry]


  7. Caroline Brun, Natasha Lepore, Xavier Pennec, Yi-Yu Chou, Agatha D. Lee, Marina Barysheva, Greig I. de Zubicaray, Matthew Meredith, Katie McMahon, Margaret J. Wright, Arthur W. Toga, and Paul M. Thompson. A tensor-based morphometry study of genetic influences on brain structure using a new fluid registration method. In Dimitris Metaxas and Leon Axel, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), volume 5242 of Lecture Notes in Computer Science, New York, USA, pages 914-921, September 2008. Springer. Note: PMID: 18982692. [bibtex-entry]


  8. Caroline Brun, Natasha Lepore, Xavier Pennec, Yi-Yu Chou, Agatha D. Lee, Greig I. de Zubicaray, Katie McMahon, Margaret J. Wright, Marina Barysheva, Arthur W. Toga, and Paul M. Thompson. A new registration method based on Log-Euclidean Tensor metrics and its application to genetic studies. In Proc. of the 2008 IEEE Int. Symp. on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 14-17, pages 1115-1118, 2008. [bibtex-entry]


  9. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. A Forward Model to Build Unbiased Atlases from Curves and Surfaces. In X. Pennec and S. Joshi, editors, Proc. of the International Workshop on the Mathematical Foundations of Computational Anatomy (MFCA-2008), September 2008. [bibtex-entry]


  10. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Sparse Approximation of Currents for Statistics on Curves and Surfaces. In Dimitris Metaxas, Leon Axel, Gábor Székely, and Gabor Fichtinger, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), Part II, volume 5242 of LNCS, New-York, USA, pages 390-398, September 2008. Springer. Note: PMID: 18982629. [bibtex-entry]


  11. Tristan Glatard, Johan Montagnat, and Xavier Pennec. A Probabilistic Model to Analyse Workflow Performance on Production Grids. In 8th IEEE International Symposium on Cluster Computing and the Grid (CCGRID'08), pages 510-517, May 2008. IEEE. [bibtex-entry]


  12. Monica Hernandez, Salvador Olmos, and Xavier Pennec. Comparing algorithms for diffeomorphic registration: Stationary LDDMM and Diffeomorphic Demons. In X. Pennec and S. Joshi, editors, Proc. of the International Workshop on the Mathematical Foundations of Computational Anatomy (MFCA-2008), September 2008. [bibtex-entry]


  13. Heike Hufnagel, Xavier Pennec, Jan Ehrhardt, Nicholas Ayache, and Heinz Handels. A Global Criterion for the Computation of Statistical Shape Model Parameters Based on Correspondence Probabilities. In Springer, editor, Bildverarbeitung für die Medizin 2008, pages 277-282, 2008. [bibtex-entry]


  14. H. Hufnagel, X. Pennec, J. Ehrhardt, N. Ayache, and H. Handels. Comparison of Statistical Shape Models Built on Correspondence Probabilities and One-to-One Correspondences. In Proc. SPIE Symposium on Medical Imaging '08, volume 6914 of SPIE Conference Series, San Diego, USA, February 2008. [bibtex-entry]


  15. Natasha Lepore, Caroline Brun, Yi-Yu Chou, Agatha D. Lee, Marina Barysheva, Xavier Pennec, Katie McMahon, Matthew Meredith, Greig I. de Zubicaray, Margaret J. Wright, Arthur W. Toga, and Paul M. Thompson. Best individual template selection from deformation tensor minimization. In Proc. of the 2008 IEEE Int. Symp. on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 14-17, pages 460-463, 2008. [bibtex-entry]


  16. Erik Pernod, Jean-Christophe Souplet, Javier Rojas Balderrama, Diane Lingrand, and Xavier Pennec. Multiple Sclerosis Brain MRI Segmentation Workflow deployment on the EGEE Grid. In MICCAI-Grid Workshop (MICCAI-Grid), New York, NY, USA, pages 55-64, September 2008. [bibtex-entry]


  17. Jean-Marc Peyrat, Hervé Delingette, Maxime Sermesant, Xavier Pennec, Chenyang Xu, and Nicholas Ayache. Registration of 4D Time-Series of Cardiac Images with Multichannel Diffeomorphic Demons. In Dimitris Metaxas, Leon Axel, Gabor Fichtinger, and Gábor Székely, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), volume 5242 of Lecture Notes in Computer Science, New York, USA, pages 972-979, September 2008. Springer. Note: PMID: 18982699. [bibtex-entry]


  18. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Symmetric Log-Domain Diffeomorphic Registration: A Demons-based Approach. In Dimitris Metaxas, Leon Axel, Gabor Fichtinger, and Gábor Székely, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), Part I, volume 5241 of Lecture Notes in Computer Science, New York, USA, pages 754-761, September 2008. Springer. Note: PMID: 18979814. [bibtex-entry]


  19. Boon Thye Thomas Yeo, Tom Vercauteren, Pierre Fillard, Xavier Pennec, Polina Golland, Nicholas Ayache, and Olivier Clatz. DTI Registration with Exact Finite-Strain Differential. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 2008. IEEE. [bibtex-entry]


  20. Caroline Brun, Natasha Lepore, Xavier Pennec, Yi-Yu Chou, Oscar L. Lopez, Howard J. Aizenstein, James T. Becker, Arthur W. Toga, and Paul M. Thompson. Comparison of Standard and Riemannian Fluid Registration for Tensor-Based Morphometry in HIV/AIDS. In Proc. of MICCAI'07 Workshop on Statistical Registration: Pair-wise and Group-wise Alignment and Atlas Formation, Brisbane, Australia, 2007. [bibtex-entry]


  21. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Measuring Brain Variability via Sulcal Lines Registration: a Diffeomorphic Approach. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 4791 of LNCS, Brisbane, Australia, pages 675-682, October 2007. Springer. Note: PMID: 18051117. [bibtex-entry]


  22. P. Fillard, X. Pennec, P.M. Thompson, and N. Ayache. Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines. In Proc. of MICCAI'07 Workshop on Statistical Registration: Pair-wise and Group-wise Alignment and Atlas Formation, Brisbane, Australia, 2007. [bibtex-entry]


  23. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Optimizing jobs timeouts on clusters and production grids. In International Symposium on Cluster Computing and the Grid (CCGrid), Rio de Janeiro, pages 100-107, May 2007. IEEE. [bibtex-entry]


  24. Heike Hufnagel, Xavier Pennec, Jan Ehrhardt, Heinz Handels, and Nicholas Ayache. Point-Based Statistical Shape Models with Probabilistic Correspondences and Affine EM-ICP. In Springer, editor, Bildverarbeitung fuer die Medizin 2007, Informatik aktuell, pages 434-438, March 2007. Springer. Note: Third prize in category best scientific work. Keyword(s): statistical shape models, registration, EM-ICP, probabilistic correspondences. [bibtex-entry]


  25. H. Hufnagel, X. Pennec, J. Ehrhardt, H. Handels, and N. Ayache. Shape Analysis Using a Point-Based Statistical Shape Model Built on Correspondence Probabilities. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), volume 4791 of LNCS, Brisbane, Australia, pages 959-967, October 2007. Springer. Note: PMID: 18051151. [bibtex-entry]


  26. Natasha Lepore, Caroline Brun, Xavier Pennec, Yi-Yu Chou, Oscar L. Lopez, Howard J. Aizenstein, James T. Becker, Arthur W. Toga, and Paul M. Thompson. Mean Template for Tensor-Based Morphometry using Deformation Tensors. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), volume 4792 of LNCS, Brisbane, Australia, pages 826-833, October 2007. Springer. Note: PMID: 18044645. [bibtex-entry]


  27. Stephane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. Clinical Evaluation of a Respiratory Gated Guidance System for Liver Punctures. In Nicholas Ayache, Sébastien Ourselin, and Anthony J. Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), volume 4792 of Lecture Notes in Computer Science, Brisbane, Australia, pages 77-85, October 2007. Springer. Note: PMID: 18044555. [bibtex-entry]


  28. Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, Elliot McVeigh, and Nicholas Ayache. Statistical Comparison of Cardiac Fibre Architectures. In Proceedings of Functional Imaging and Modeling of the Heart 2007 (FIMH'07), volume 4466 of LNCS, pages 413-423, 7-9 June 2007. [bibtex-entry]


  29. Tom Vercauteren, Xavier Pennec, Ezio Malis, Aymeric Perchant, and Nicholas Ayache. Insight Into Efficient Image Registration Techniques and the Demons Algorithm. In Proc. Information Processing in Medical Imaging (IPMI'07), volume 4584 of Lecture Notes in Computer Science, Kerkrade, The Netherlands, pages 495-506, July 2007. Springer. Note: PMID: 17633724. [bibtex-entry]


  30. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Diffeomorphic Demons Using ITK's Finite Difference Solver Hierarchy. In Insight Journal -- ISC/NA-MIC Workshop on Open Science at MICCAI 2007, October 2007. Note: Source code available online. [bibtex-entry]


  31. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Non-parametric Diffeomorphic Image Registration with the Demons Algorithm. In Nicholas Ayache, Sébastien Ourselin, and Anthony J. Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), volume 4792 of Lecture Notes in Computer Science, Brisbane, Australia, pages 319-326, October 2007. Springer. Note: PMID: 18044584. [bibtex-entry]


  32. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. A Log-Euclidean Framework for Statistics on Diffeomorphisms. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, number 4190 of LNCS, pages 924-931, 2-4 October 2006. Note: PMID: 17354979. Keyword(s): Non-rigid registration, Lie groups, Diffeomorphisms, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]


  33. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. A Log-Euclidean Polyaffine Framework for Locally Rigid or Affine Registration. In J.P.W. Pluim, B. Likar, and F.A. Gerritsen, editors, Proceedings of the Third International Workshop on Biomedical Image Registration (WBIR'06), volume 4057 of LNCS, Utrecht, The Netherlands, pages 120-127, 9 - 11 July 2006. Springer. Keyword(s): Polyaffine transformations, Diffeomorphisms, Non-rigid registration, Multi-affine registration, Lie groups, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]


  34. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. Statistics on Diffeomorphisms in A Log-Euclidean Framework. In X. Pennec and S. Joshi, editors, Proc. of the International Workshop on the Mathematical Foundations of Computational Anatomy (MFCA-2006), pages 16-17, 1st of October 2006. Keyword(s): Non-rigid registration, Lie groups, Diffeomorphisms, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]


  35. Antoine Azar, Chenyang Xu, Xavier Pennec, and Nicholas Ayache. An interactive Intensity- and Feature-Based Non-Rigid Registration Framework for 3D Medical Images. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 824-827, April 2006. Keyword(s): Spine, variability model, Riemannian geometry. [bibtex-entry]


  36. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Nicholas Ayache, and Hubert Labelle. A Novel Framework for the 3D Analysis of Spine Deformation Modes. In Research into Spinal Deformities, volume 123 of Studies in Health Technology and Informatics, pages 176-182, 2006. Note: PMID: 17108423. [bibtex-entry]


  37. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Nicholas Ayache, and Hubert Labelle. Assessment of Brace Local Action on Vertebrae Relative Poses. In Research into Spinal Deformities, volume 123 of Studies in Health Technology and Informatics, pages 372-378, 2006. Note: PMID: 17108454. [bibtex-entry]


  38. Jonathan Boisvert, Xavier Pennec, Nicholas Ayache, Hubert Labelle, and Farida Cheriet. 3D Anatomic Variability Assesment of the Scoliotic Spine Using Statistics on Lie Groups. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 750-753, April 2006. IEEE. Keyword(s): Spine, variability model, Riemannian geometry. [bibtex-entry]


  39. Jonathan Boisvert, Xavier Pennec, Hubert Labelle, Farida Cheriet, and Nicholas Ayache. Principal Spine Shape Deformation Modes Using Riemannian Geometry and Articulated Models. In Proc of the IV Conference on Articulated Motion and Deformable Objects, Andratx, Mallorca, Spain, 11-14 July, volume 4069 of LNCS, pages 346-355, 2006. Springer. Note: AMDO best paper award 2006. [bibtex-entry]


  40. Pierre Fillard, Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Clinical DT-MRI estimation, smoothing and fiber tracking with log-Euclidean metrics. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 786-789, April 2006. Keyword(s): DT-MRI, tensor estimation, Riemannian geometry, Log-Euclidean metrics. [bibtex-entry]


  41. J. Freund, D. Comaniciu, Y. Ioannis, P. Liu, R. McClatchey, E. Moley-Fletcher, X. Pennec, G. Pongiglione, and X.S. Zhou. Health-e-Child: An Integrated Biomedical Platform for Grid-Based Pediatrics. In Proc of Health-Grid 2006, volume 120 of Studies in Health Technology and Informatics, Valancia, Spain, pages 259-270, 2006. Note: PMID: 16823144. [bibtex-entry]


  42. Tristan Glatard, Johan Montagnat, and Xavier Pennec. An experimental comparison of Grid5000 clusters and the EGEE grid. In Proc of the Workshop on Experimental Grid testbeds for the assessment of large-scale distributed applications and tools (EXPGRID'06), Paris, France, June 19-23, 2006. [bibtex-entry]


  43. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Efficient services composition for grid-enabled data-intensive applications. In IEEE, editor, Proceedings of the IEEE International Symposium on High Performance Distributed Computing (HPDC'06), Paris, France, June 19, pages 333-334, June 2006. IEEE. [bibtex-entry]


  44. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Medical image registration algorithms assessment: Bronze Standard application enactment on grids using the MOTEUR workflow engine. In Proc. of the HealthGrid conference (HealthGrid'06), Valencia, Spain, June 7-9, volume 120 of Studies in Health Technology and Informatics, pages 93-103, 2006. Note: PMID: 16823126. [bibtex-entry]


  45. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Probabilistic and dynamic optimization of job partitioning on a grid infrastructure. In 14th euromicro conference on Parallel, Distributed and network-based Processing (PDP06), Montbéliard-Sochaux, pages 231-238, February 2006. IEEE. [bibtex-entry]


  46. Tristan Glatard, Xavier Pennec, and Johan Montagnat. Performance evaluation of grid-enabled registration algorithms using bronze-standards. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part II, volume 4191 of LNCS, pages 152-160, 2-4 October 2006. Springer. Note: PMID: 17354767. [bibtex-entry]


  47. Xavier Pennec. Left-Invariant Riemannian Elasticity: a distance on Shape Diffeomorphisms?. In X. Pennec and S. Joshi, editors, Proc. of the International Workshop on the Mathematical Foundations of Computational Anatomy (MFCA-2006), pages 1-13, 2006. [bibtex-entry]


  48. Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, Elliot McVeigh, and Nicholas Ayache. Towards a Statistical Atlas of Cardiac Fiber Structure. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, volume 4190 of LNCS, pages 297-304, 2-4 October 2006. Springer. Note: PMID: 17354903. Keyword(s): DT-MRI, DTI, Diffusion Tensor, Log-Euclidean, Cardiac Fiber, Heart, Myocardium, Atlas. [bibtex-entry]


  49. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Fast and Simple Calculus on Tensors in the Log-Euclidean Framework. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part I, volume 3749 of LNCS, Palm Springs, CA, USA, October 26-29, pages 115-122, 2005. Springer. Note: PMID: 16685836. Keyword(s): DT-MRI, Magnetic Resonance Imaging, Tensors, brain, Riemannian geometry, Lie group, regularization, interpolation, Log-Euclidean metrics. [bibtex-entry]


  50. Olivier Commowick, Radu Stefanescu, Pierre Fillard, Vincent Arsigny, Nicholas Ayache, Xavier Pennec, and Grégoire Malandain. Incorporating Statistical Measures of Anatomical Variability in Atlas-to-Subject Registration for Conformal Brain Radiotherapy. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part II, volume 3750 of LNCS, Palm Springs, CA, USA, October 26-29, pages 927-934, 2005. Springer. Note: PMID: 16686049. Keyword(s): registration, brain, Brain Stem, statistics, validation, Tensors. [Annotation] [bibtex-entry]


  51. Pierre Fillard, Vincent Arsigny, Nicholas Ayache, and Xavier Pennec. A Riemannian Framework for the Processing of Tensor-Valued Images. In Ole Fogh Olsen, Luc Florak, and Arjan Kuijper, editors, Deep Structure, Singularities, and Computer Vision (DSSCV), LNCS, pages 112-123, June 2005. Springer. Keyword(s): Tensors, Riemannian geometry, Structure tensors, regularization. [bibtex-entry]


  52. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Paul M. Thompson, and Nicholas Ayache. Extrapolation of Sparse Tensor Fields: Application to the Modeling of Brain Variability. In Gary Christensen and Milan Sonka, editors, Proc. of Information Processing in Medical Imaging 2005 (IPMI'05), volume 3565 of LNCS, Glenwood springs, Colorado, USA, pages 27-38, July 2005. Springer. Note: PMID: 17354682. Keyword(s): Sucal lines, Riemannian geometry, brain, Modeling of anatomical variability, Tensors. [bibtex-entry]


  53. Cécile Germain, Vincent Breton, Patrick Clarysse, Y. Gaudeau, Tristan Glatard, Emmanuel Jeannot, Yannick Legré, Charles Loomis, Johan Montagnat, Jean-Marie Moureau, Angel Osorio, Xavier Pennec, and Romain Texier. Grid-enabling medical image analysis. In proceedings of the IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGRID'05), volume 1, Cardiff, UK, pages 487-495, May 2005. IEEE. [bibtex-entry]


  54. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Grid-enabled workflows for data intensive applications. In Proc. 18th IEEE Symp. on Computer Based Medical Systems (CBMS'05), Dublin, Ireland, June 23-24, pages 537-542, 2005. IEEE. [bibtex-entry]


  55. Heike Hufnagel, Xavier Pennec, Grégoire Malandain, Hans Handels, and Nicholas Ayache. Non-Linear 2D and 3D Registration Using Block-Matching and B-Splines. In Bildverarbeitung fuer die Medizin 2005, Informatik aktuell, Heidelberg, Germany, pages 325-329, March 2005. Deutsches Krebsforschungszentrum, Springer. [bibtex-entry]


  56. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. A complete Augmented Reality Guidance System for Liver Punctures: First Clinical Evaluation. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part I, volume 3749 of LNCS, Palm Springs, CA, USA, October 26-29, pages 539-547, 2005. Springer. Note: PMID: 16685888. [bibtex-entry]


  57. Xavier Pennec, Radu Stefanescu, Vincent Arsigny, Pierre Fillard, and Nicholas Ayache. Riemannian Elasticity: A statistical regularization framework for non-linear registration. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part II, volume 3750 of LNCS, Palm Springs, CA, USA, October 26-29, pages 943-950, 2005. Springer. Note: PMID: 16686051. Keyword(s): registration, statistics, Tensors, Riemannian geometry, brain. [bibtex-entry]


  58. Tom Vercauteren, Aymeric Perchant, Xavier Pennec, and Nicholas Ayache. Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part I, volume 3749 of LNCS, Palm Springs, CA, USA, October 26-29, pages 753-760, 2005. Springer. Note: PMID: 16685914. [bibtex-entry]


  59. Guillaume Flandin, Xavier Pennec, Alexis Roche, Will Penny, Nicholas Ayache, and Jean-Baptiste Poline. Multi-subject anatomo-functional classification for activation studies. In NeuroImage (HBM'04), Budapest, Hungary, 2004. [bibtex-entry]


  60. Derek Hill, Xavier Pennec, Michael Burns, Michael Parkin, Jo Hajnal, Radu Stefanescu, Daniel Rueckert, and Johan Montagnat. Intraoperable Medical Image Registration Grid Service. In Proc. of HealthGrid 2004, Clermont-Ferrand, January 2004. European Commission, DG Information Society. Keyword(s): registration, matching, real time, parallelism. [bibtex-entry]


  61. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. An Accuracy Certified Augmented Reality System for Therapy Guidance. In Proc. of the 8th European Conference on Computer Vision (ECCV 04), Part III, volume 3023 of LNCS, Prague, pages 79-91, May 2004. Springer. Keyword(s): Augmented reality, 3D/2D registration, uncertainty, validation. [bibtex-entry]


  62. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. An Augmented Reality System to Guide Liver Punctures. In Workshop AMI-ARCS 2004 held in conjunction with MICCAI'04, pages 77-86, September 2004. IRISA Rennes. [bibtex-entry]


  63. Stéphane Nicolau, Jérôme Schmid, Xavier Pennec, Luc Soler, and Nicholas Ayache. An Augmented Reality & Virtuality Interface for a Puncture Guidance System: Design and Validation on an Abdominal Phantom. In Guang-Zhong Yang and Tianzi Jiang, editors, Proc of the Second Int. Workshop on Medical Imaging and Augmented Reality MIAR 2004, volume 3150 of LNCS, Beijing, China, pages 302-310, August 2004. Springer. [bibtex-entry]


  64. Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, Hervé Delingette, Didier Mutter, and Jacques Marescaux. Virtual Reality, Augmented Reality and Robotics in surgical procedures of the liver. In Th. M. Buzug and T. C. Lueth, editors, Perspectives in Image-guided Surgery. Proceedings of the Scientific Workshop on Medical Robotics, Navigation and Visualization (MRNV) 2004, RheinAhrCampus Remagen, Germany, pages 476-484, March 11-12 2004. World Scientific. [bibtex-entry]


  65. Luc Soler, Stéphane Nicolau, Jérôme Schmid, Christophe Koehl, Jacques Marescaux, Xavier Pennec, and Nicholas Ayache. Virtual Reality and Augmented Reality in Digestive Surgery. In Proc. of IEEE International Symposium on Mixed and Augmented Reality (ISMAR'04), pages 278-279, November 2004. [bibtex-entry]


  66. Radu Stefanescu, Olivier Commowick, Grégoire Malandain, Pierre-Yves Bondiau, Nicholas Ayache, and Xavier Pennec. Non-Rigid Atlas to Subject Registration with Pathologies for Conformal Brain Radiotherapy. In C. Barillot, D.R. Haynor, and P. Hellier, editors, Proc. of the 7th Int. Conf on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004, volume 3216 of LNCS, Saint-Malo, France, pages 704-711, September 2004. Springer. Keyword(s): registration, non-rigid, conformal radiotherapy, atlas, pathology. [bibtex-entry]


  67. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. A Grid Service for the Interactive Use of a Parallel Non-Rigid Registration Algorithm. In Proc. of HealthGrid 2004, Clermont-Ferrand, January 2004. European Commission, DG Information Society. Note: PMID: 15924183. Keyword(s): registration, matching, real time, parallelism. [bibtex-entry]


  68. Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Polyrigid and Polyaffine Transformations: A New Class of Diffeomorphisms for Locally Rigid or Affine Registration. In Randy E. Ellis and Terry M. Peters, editors, Proc. of MICCAI'03, Part II, volume 2879 of LNCS, Montreal, pages 829-837, November 2003. Springer. Note: MICCAI 2003 Best Student Award in Image Processing and Visualization. PMID: 15948656. [bibtex-entry]


  69. Guillaume Flandin, Will Penny, Xavier Pennec, Nicholas Ayache, and Jean-Baptiste Poline. A multisubject anatomo-functional parcellation of the brain. In Tomas Paus, Ed Bullmore, and Jonathan D. Cohen, editors, NeuroImage (HBM'03), New York, USA, 2003. Academic Press. Keyword(s): fMRI. [bibtex-entry]


  70. Miguel Angel González Ballester, Xavier Pennec, and Nicholas Ayache. Generalized Image Models and Their Application as Statistical Models of Images. In Randy E. Ellis and Terry M. Peters, editors, Proc. of MICCAI'03, volume 2879 of Lecture Notes in Computer Science, Montreal, Canada, pages 150-157, November 2003. Springer. [bibtex-entry]


  71. Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, and Nicholas Ayache. Augmented Reality guided radio-frequency tumor ablation. In Proceedings of Augmented and Virtual Reality Workshop (AVIR03), Genève, pages 34-35, 2003. Keyword(s): 3D/2D registration, Augmented reality, validation. [bibtex-entry]


  72. Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, and Nicholas Ayache. Guidage de ponctions percutanées à l'aide d'un système de vision basé sur une méthode de recalage 3D/2D. In Actes du colloque Imagerie pour les sciences du vivant et de l'ingénieur (IMVIE03), Strasbourg, 2003. Keyword(s): 3D/2D registration, Augmented reality, validation. [bibtex-entry]


  73. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. Evaluation of a New 3D/2D Registration Criterion for Liver Radio-Frequencies Guided by Augmented Reality. In N. Ayache and H. Delingette, editors, International Symposium on Surgery Simulation and Soft Tissue Modeling (IS4TM'03), volume 2673 of Lecture Notes in Computer Science, Juan-les-Pins, France, pages 270-283, 2003. INRIA Sophia Antipolis, Springer. Keyword(s): 3D/2D registration, Augmented reality, validation. [bibtex-entry]


  74. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. Vision augmentée de structures anatomiques abdominales recalées par stéréoscopie. In Actes du quatrième colloque francophone. Méthodes et Techniques Optiques pour l'Industrie, volume 1, Belfort, pages 413-418, 2003. [bibtex-entry]


  75. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Grid Enabled Non-Rigid Registration with a Dense Transformation and A Priori Information. In Randy E. Ellis and Terry M. Peters, editors, Proc. of MICCAI'03, Part II, volume 2879 of LNCS, Montreal, pages 804-811, November 2003. Springer. [bibtex-entry]


  76. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Parallel non-rigid registration on a cluster of workstations. In Sofie Norager, editor, Proc. of HealthGrid'03, Lyon, January 2003. European Commission, DG Information Society. Keyword(s): registration, matching, real time, parallelism. [bibtex-entry]


  77. Guillaume Flandin, Ferath Kherif, Xavier Pennec, Grégoire Malandain, Nicholas Ayache, and Jean-Baptiste Poline. Improved Detection Sensitivity in Functional MRI Data using a Brain Parcelling Technique. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 467-474, September 2002. Springer. Keyword(s): fMRI. [bibtex-entry]


  78. Guillaume Flandin, Ferath Kherif, Xavier Pennec, Denis Rivière, Nicholas Ayache, and Jean-Baptiste Poline. A new representation of fMRI data using anatomo-functional constraints. In NeuroImage (HBM'02), Sendai, Japan, 2002. Keyword(s): fMRI. [bibtex-entry]


  79. Guillaume Flandin, Ferath Kherif, Xavier Pennec, Denis Rivière, Nicholas Ayache, and Jean-Baptiste Poline. Parcellation of brain images with anatomical and functional constraints for fMRI data analysis. In IEEE International Symposium on Biomedical Imaging, Washington, USA, pages 907-910, 2002. Keyword(s): fMRI. [bibtex-entry]


  80. Sébastien Granger and Xavier Pennec. Multi-scale EM-ICP: A Fast and Robust Approach for Surface Registration. In A. Heyden, G. Sparr, M. Nielsen, and P. Johansen, editors, European Conference on Computer Vision (ECCV 2002), volume 2353 of LNCS, Copenhagen, Denmark, pages 418-432, 2002. Springer. Keyword(s): surface registration. [bibtex-entry]


  81. P. Jannin, J.M. Fitzpatrick, D.J. Hawkes, X. Pennec, R. Sahidi, and M.W. Vannier. White paper: validation of medical image processing in image-guided therapy. In H.U. Lemke, M.W. Vannier, K. Inamura, A.G. Farman, K. Doi, and J.H.C. Reiber, editors, Proc. of Int. Conf. on Computer Assisted Radiology (CARS 2002), pages 299-305, 2002. Springer. [bibtex-entry]


  82. Sébastien Ourselin, Radu Stefanescu, and Xavier Pennec. Robust registration of multi-modal images: towards real-time clinical applications. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2489 of LNCS, Tokyo, pages 140-147, September 2002. Springer. Note: A preliminary version appeared as INRIA RR-4333. Keyword(s): parallelism, robust estimation, registration, matching. [bibtex-entry]


  83. Maxime Sermesant, Clément Forest, Xavier Pennec, Hervé Delingette, and Nicholas Ayache. Biomechanical Model Construction from Different Modalities: Application to Cardiac Images. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 714-721, September 2002. Springer. Keyword(s): 4D, Heart, segmentation, medical images, motion tracking. [bibtex-entry]


  84. Nicholas Ayache, Xavier Pennec, and Pascal Cachier. Fusing 3-D ultrasound and MRI for real-time image-guided neurosurgery. In Medical Physics and Clinical Engineering Conference, 2001. Note: Invited talk, Physica Medica (European journal of Medical Physics) 17(3). Keyword(s): registration, matching, ultrasound, magnetic resonance, multimodal, deformations. [bibtex-entry]


  85. Pascal Cachier, Jean-François Mangin, Xavier Pennec, Denis Rivière, Dimitri Papadopoulos-Orfanos, Jean Régis, and Nicholas Ayache. Multisubject Non-Rigid Registration of Brain MRI using Intensity and Geometric Features. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 734-742, October 2001. Keyword(s): registration, matching, multisubject, magnetic resonance, Deformations. [bibtex-entry]


  86. Sébastien Granger, Xavier Pennec, and Alexis Roche. Rigid Point-Surface Registration Using an EM variant of ICP for Computer Guided Oral Implantology. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 752-761, October 2001. Keyword(s): registration, matching, surface, odontology, validation, uncertainty. [bibtex-entry]


  87. Xavier Pennec. Evaluation of the Uncertainty in Various Registration problems. In K.W. Bowyer, M.H. Loew, H. S. Stiehl, and M. Viergever, editors, Methodology of Evaluation in Computational Medical Imaging, Dagsthul, pages 15-16, March 2001. Schloss Dagsthul, Int. Conf. and Research Center for Computer Science. Note: Dagstuhl Seminar 01111. Keyword(s): registration, matching, validation, uncertainty. [bibtex-entry]


  88. Xavier Pennec, Nicholas Ayache, Alexis Roche, and Pascal Cachier. Non-rigid MR/US registration for tracking brain deformations. In IEEE Computer Society Press, editor, Proc of Int. Workshop on Medical Imaging and Augmented Reality (MIAR 2001), 10-12 June 2001, Shatin, Hong Kong, pages 79-86, June 2001. Keyword(s): registration, matching, motion tracking, multimodal, ultrasound, magnetic resonance, deformations. [bibtex-entry]


  89. Xavier Pennec, Pascal Cachier, and Nicholas Ayache. Tracking brain deformations in time sequences of 3D US images. In M.I. Insana and R.M. Leahy, editors, Proc. of IPMI'01, volume 2082 of LNCS, Davis, CA, USA, pages 169-175, June 2001. Springer. Keyword(s): registration, matching, motion tracking, ultrasound, deformations. [bibtex-entry]


  90. Pascal Cachier and Xavier Pennec. 3D Non-Rigid Registration by Gradient Descent on a Gaussian-Windowed Similarity Measure using Convolutions. In Proc. of IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA'00), Hilton Head Island, South Carolina, USA, pages 182-189, June 2000. IEEE Computer society. Keyword(s): registration, matching, multimodal, magnetic resonance, deformations. [bibtex-entry]


  91. D. Etienne, A. Stankoff, X. Pennec, S. Granger, A. Lacan, and R. Derycke. A new approach for dental implant aided surgery. A pilot evaluation. In H.U. Lemke, M.W. Vannier, K. Inamura, A.G. Farman, and K. Doi, editors, Proc. of CARS'2000, pages 927-931, 2000. Elsevier. Keyword(s): validation, odontology. [bibtex-entry]


  92. A. Roche, X. Pennec, M. Rudolph, D. P. Auer, G. Malandain, S. Ourselin, L. M. Auer, and N. Ayache. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. In A.M. DiGioia and S. Delp, editors, Proc. of the 3rd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'00), volume 1935 of LNCS, Pittsburgh, Pennsylvanie, USA, pages 567-577, October 11-14 2000. Note: Published in IEEE TMI 20(10), oct. 2001, p. 25-31. Keyword(s): registration, matching, multimodal, magnetic resonance, ultrasound, correlation ratio. [bibtex-entry]


  93. Sébastien Ourselin, Alexis Roche, Gérard Subsol, and Xavier Pennec. Automatic Alignment of Histological Sections. In F. Pernus, S. Kovacic, H.S. Stiehl, and M.A. Viergever, editors, International Workshop on Biomedical Image Registration, WBIR'99, Bled (Slovénie), pages 1-13, August 1999. Keyword(s): registration, matching, histology. [bibtex-entry]


  94. Xavier Pennec. Probabilities and Statistics on Riemannian Manifolds: Basic Tools for Geometric Measurements. In A.E. Cetin, L. Akarun, A. Ertuzun, M.N. Gurcan, and Y. Yardimci, editors, Proc. of Nonlinear Signal and Image Processing (NSIP'99), volume 1, June 20-23, Antalya, Turkey, pages 194-198, 1999. IEEE-EURASIP. Keyword(s): statistics, geometry, Riemannian geometry. [bibtex-entry]


  95. Xavier Pennec, Pascal Cachier, and Nicholas Ayache. Understanding the ``Demon's Algorithm'': 3D Non-Rigid registration by Gradient Descent. In C. Taylor and A. Colchester, editors, Proc. of 2nd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'99), volume 1679 of LNCS, Cambridge, UK, pages 597-605, September 1999. Springer. Keyword(s): registration, matching, ultrasound, deformations. [bibtex-entry]


  96. Xavier Pennec, Charles R.G. Guttmann, and Jean-Philippe Thirion. Feature-based Registration of Medical Images: Estimation and Validation of the Pose Accuracy. In Proc. of First Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'98), volume 1496 of LNCS, Cambridge, USA, pages 1107-1114, October 1998. Springer. Keyword(s): registration, matching, magnetic resonance, validation, uncertainty. [bibtex-entry]


  97. Alexis Roche, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. The Correlation Ratio as a New Similarity Measure for Multimodal Image Registration. In Proc. of First Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'98), volume 1496 of LNCS, Cambridge, USA, pages 1115-1124, October 1998. Springer. Keyword(s): registration, matching, multimodal, correlation ratio. [bibtex-entry]


  98. Xavier Pennec. Registration of Uncertain Geometric Features: Estimating the Pose and its Accuracy. In J. Le Moigne, editor, Proc of the First Image Registration Workshop, November 20-21 1997, Greenbelt, Maryland, USA, pages 263-272, November 1997. CESDIS. Keyword(s): registration, matching, uncertainty, validation, geometry. [bibtex-entry]


  99. Xavier Pennec. Multiple Registration and Mean Rigid Shape - Application to the 3D case. In K.V. Mardia, C.A. Gill, and Dryden I.L., editors, Image Fusion and Shape Variability Techniques (16th Leeds Annual Statistical Workshop), pages 178-185, July 1996. University of Leeds, UK. Keyword(s): registration, multiple registration, shape, statistics. [bibtex-entry]


  100. Xavier Pennec and Nicholas Ayache. Quelques problèmes posés par la gestion des primitives géométriques en vision par ordinateur. In Journées ORASIS, pages 111-116, May 1996. Keyword(s): geometry, statistics, uncertainty, Riemannian geometry. [bibtex-entry]


  101. Xavier Pennec and Nicholas Ayache. Randomness and Geometric Features in Computer Vision. In IEEE Conf. on Computer Vision and Pattern Recognition (CVPR'96), San Francisco, Cal, USA, pages 484-491, June 1996. Note: Published in J. of Math. Imag. and Vision 9(1), July 1998, p. 49-67. Keyword(s): geometry, statistics, registration, uncertainty, Riemannian geometry. [bibtex-entry]


  102. J. West, J.M. Fitzpatrick, M.Y. Wang, B.M. Dawant, C.R. Maurer, Jr., R.M. Kessler, R.J. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes, P. Suetens, D. Vandermeulen, P.A. van den Elsen, P.F. Hemler, S. Napel, T.S. Sumanaweera, B. Harkness, D.L.G. Hill, C. Studholme, G. Malandain, X. Pennec, M.E. Noz, G.Q. Maguire, Jr., M. Pollack, C.A. Pelizzari, R.A. Robb, D. Hanson, and R.P. Woods. Comparison and evaluation of retrospective intermodality image registration techniques. In Medical Imaging 1996: Image Processing, volume 2710 of SPIE proceedings series, Newport Beach, California, USA, February 10-15 1996. Keyword(s): registration, matching, multimodal, validation. [bibtex-entry]


  103. Xavier Pennec and Jean-Philippe Thirion. Validation of 3D Registration Methods based on Points and Frames. In Proc. of the 5th Int. Conf on Comp. Vision (ICCV'95), Cambridge, Ma, pages 557-562, June 1995. Note: Published in Int. J. of Comp. Vision 25(3), 1997, p. 203-229. Keyword(s): registration, matching, uncertainty, validation. [bibtex-entry]


  104. Xavier Pennec and Nicholas Ayache. An ${{\cal O}}(n^2)$ Algorithm for 3D Substructure Matching of Proteins. In A. Califano, I. Rigoutsos, and H.J. Wolson, editors, Shape and Pattern Matching in Computational Biology -- Proc. First Int. Workshop, Seattle, Wash, June 20, 1994, pages 25-40, 1994. Plenum Publishing. Note: Published in Bioinformatics 14(6), 1998, p. 516-522. Keyword(s): registration, matching, protein structure. [bibtex-entry]


Internal reports

  1. Stanley Durrleman, Xavier Pennec, Guido Gerig, Alain Trouvé, and Nicholas Ayache. Spatiotemporal Atlas Estimation for Developmental Delay Detection in Longitudinal Datasets. Research Report RR-6952, INRIA, 2009. [bibtex-entry]


  2. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Sparse Approximation of Currents for Statistics on Curves and Surfaces. Research Report RR-6571, INRIA, June 2008. [bibtex-entry]


  3. Curzio Basso, Younes Boudjemline, Stanley Durrleman, Ender Konukoglu, Tommaso Mansi, Xavier Pennec, Giacomo Pongiglione, Matteo Santoro, Maxime Sermesant, Bertrand Stos, Nicolas Toussaint, and Gianluca Trocchio. First generation disease models: Image analysis tools, pediatric heart diseases, inflammatory diseases and brain tumors. Deliverables D11.2, European project Health-e-Child (IST-2004-027749), June 2007. [bibtex-entry]


  4. Pierre Fillard, Xavier Pennec, Paul M. Thompson, and Nicholas Ayache. Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines. Research Report 6241, INRIA, 07 2007. [bibtex-entry]


  5. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. A Fast and Log-Euclidean Polyaffine Framework for Locally Affine Registration. Research Report RR-5865, INRIA Sophia-Antipolis, March 2006. Keyword(s): Polyaffine transformations, Diffeomorphisms, Non-rigid registration, Multi-affine registration, Lie groups, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]


  6. Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Bi-invariant Means in Lie Groups. Application to Left-invariant Polyaffine Transformations. Research Report RR-5885, INRIA Sophia-Antipolis, April 2006. Keyword(s): Bi-invariant means, Fréchet means, Statistics, Lie groups, Riemannian geometry, Polyaffine transformations, Diffeomorphisms. [bibtex-entry]


  7. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Kiralee M. Hayashi, Paul M. Thompson, and Nicholas Ayache. Measuring Brain Variability by Extrapolating Sparse Tensor Fields Measured on Sulcal Lines. Research Report 5887, INRIA, April 2006. [bibtex-entry]


  8. Tristan Glatard, Johan Montagnat, and Xavier Pennec. Optimizing jobs timeouts on clusters and production grids. Technical report I3S/RR-2006-35-FR, I3S, 2006. [bibtex-entry]


  9. Tristan Glatard, Johan Montagnat, Xavier Pennec, David Emsellem, and Diane Lingrand. MOTEUR: a data-intensive service-based workflow manager. Technical report I3S/RR-2006-07-FR, I3S RAINBOW team, Univ. Nice-Sophia-Antipolis, March 2006. [bibtex-entry]


  10. Martin Huber, Xavier Pennec, Alessandro Verri, Harry Dimitropoulos, Maxime Sermesant, Cristian Mircean, Sonja Zilner, Homer Metaxas, Michael Lynch, Ender Konukoglu, Maria-Luisa Garre, Anna Charisi, Curzio Basso, and Elise Arnaud. State of the art report on disease models, decision support systems and knwoledge discovery for pediatric oncology, cardiology and rheumatology. Deliverables 11.1, 12.1, 13.1, European project Health-e-Child (IST-2004-027749), June 2006. [bibtex-entry]


  11. Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, Elliot McVeigh, and Nicholas Ayache. Towards a Statistical Atlas of Cardiac Fiber Architecture. Research Report 5906, INRIA, May 2006. Keyword(s): DT-MRI, DTI, Diffusion Tensor, Log-Euclidean, Cardiac Fiber, Heart, Myocardium, Atlas. [bibtex-entry]


  12. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Fast and Simple Computations on Tensors with Log-Euclidean Metrics. Research Report RR-5584, INRIA, Sophia-Antipolis, France, May 2005. Keyword(s): DT-MRI, Magnetic Resonance Imaging, Tensors, brain, Riemannian geometry, Lie group, regularization, extrapolation, interpolation. [bibtex-entry]


  13. Pierre Fillard, Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Joint Estimation and Smoothing of Clinical DT-MRI with a Log-Euclidean Metric. Research Report RR-5607, INRIA, Sophia-Antipolis, France, June 2005. Keyword(s): tensors, DT-MRI, DTI, estimation, regularization, fiber tracking, Log-Euclidean, Riemannian geometry. [bibtex-entry]


  14. Tristan Glatard, Johan Montagnat, and Xavier Pennec. An optimized workflow enactor for data-intensive grid applications. Technical report I3S/RR-2005-32, Nice-Sophia-Antipolis University, I3S Lab, RAINBOW project, 2005. [bibtex-entry]


  15. Xavier Pennec. Probabilities and Statistics on Riemannian Manifolds: A Geometric approach. Research Report 5093, INRIA, January 2004. Note: An extended version will appear in the Int. Journal of Mathematical Imaging and Vision. Keyword(s): statistics, geometry, Riemannian geometry. [bibtex-entry]


  16. Xavier Pennec, Pierre Fillard, and Nicholas Ayache. A Riemannian Framework for Tensor Computing. Research Report 5255, INRIA, July 2004. Note: Published in Int. Journal of Computer Vision 65(1), October 2005. Keyword(s): Tensors, regularization, PDE, geometry, Riemannian geometry. [bibtex-entry]


  17. Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. A novel family of geometrical transformations: Polyrigid transformations. Application to the registration of histological slices. Research report 4837, INRIA, 2003. Keyword(s): registration, matching, histology. [bibtex-entry]


  18. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. Validation of a New 3D/2D Registration Criterion including Error Prediction. Application to Image Guided Radio-Frequency Ablation of the Liver Tumors. Research report 4993, INRIA, 2003. Keyword(s): Augmented Reality, 3D/2D Registration, Uncertainty Prediction, Tumors Liver Radio-frequencies Ablation. [bibtex-entry]


  19. Sébastien Granger and Xavier Pennec. Statistiques exactes et approchées sur les normales aléatoires. Research report RR-4533, INRIA, 2002. Keyword(s): reconstruction, uncertainty, surface, random normals. [bibtex-entry]


  20. Xavier Pennec, Radu Stefanescu, and Eric Bardinet. Rapport d'étude de l'action CNES ``R&T Mise en correspondance''. Technical report, INRIA, October 2002. [bibtex-entry]


  21. Sébastien Granger, Xavier Pennec, and Alexis Roche. Rigid Point-Surface Registration using Oriented Points and an EM variant of ICP for Computer Guided Oral Implantology. Research report RR-4169, INRIA, 2001. Note: Published in MICCAI'01, Utrecht, Netherlands, LNCS 2208, p.752-761. Keyword(s): registration, matching, odontology, validation, uncertainty, surface. [bibtex-entry]


  22. Sébastien Ourselin, Xavier Pennec, Radu Stefanescu, Grégoire Malandain, and Nicholas Ayache. Robust Registration of Multi-Modal Medical Images: Towards Real-Time Clinical Applications. Research report 4333, INRIA, 2001. Keyword(s): registration, matching, real time, parallelism, magnetic resonance. [bibtex-entry]


  23. Xavier Pennec and Pascal Cachier. NT2: Non-Rigid tracking US/US, second generation (Roboscope MMIT deliverable 26). Technical report, European project Roboscope, May 2000. Keyword(s): registration, matching, motion tracking, ultrasound, deformations. [bibtex-entry]


  24. Xavier Pennec, Pascal Cachier, and Nicholas Ayache. Tracking Brain Deformations in Time-Sequences of 3D US Images. Research report RR-4091, INRIA, December 2000. Keyword(s): registration, matching, motion tracking, ultrasound, deformations. [bibtex-entry]


  25. Xavier Pennec and Alexis Roche. NM2: Non-Rigid matching MR/US second generation (Roboscope MMIT deliverable 25). Technical report, European project Roboscope, April 2000. Keyword(s): registration, matching, multimodal, magnetic resonance, ultrasound. [bibtex-entry]


  26. Alexis Roche, Xavier Pennec, Grégoire Malandain, Nicholas Ayache, and Sébastien Ourselin. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. Research Report RR-3980, INRIA, July 2000. Note: Published in IEEE TMI 20(10), oct. 2001, p. 25-31. Keyword(s): registration, matching, multimodal, magnetic resonance, ultrasound, correlation ratio. [bibtex-entry]


  27. Pascal Cachier, Xavier Pennec, and Nicholas Ayache. Fast Non-Rigid Matching by Gradient Descent: Study and Improvements of the Demons Algorithm. Research Report 3706, INRIA, June 1999. Keyword(s): registration, matching, deformations. [bibtex-entry]


  28. Xavier Pennec. AdV: Adapted viewing tools for the user interface (Roboscope MMIT deliverable 13). Technical report, European project Roboscope, September 1999. [bibtex-entry]


  29. Xavier Pennec. CoR1: Co-registration tools for MR/Robot (Roboscope MMIT deliverable 12). Technical report, European project Roboscope, April 1999. [bibtex-entry]


  30. Xavier Pennec. RM1: Rigid matching tools for MR images (Roboscope MMIT deliverable 11). Technical report, European project Roboscope, April 1999. [bibtex-entry]


  31. Xavier Pennec and Pascal Cachier. NT1: Non-Rigid tracking US/US, first generation (Roboscope MMIT deliverable 19). Technical report, European project Roboscope, December 1999. [bibtex-entry]


  32. Alexis Roche and Xavier Pennec. NM1: Non-Rigid matching MR/US first generation (Roboscope MMIT deliverable 18). Technical report, European project Roboscope, September 1999. [bibtex-entry]


  33. Sébastien Ourselin, Alexis Roche, Gérard Subsol, Xavier Pennec, and Christophe Sattonnet. Automatic Alignment of Histological Sections for 3D Reconstruction and Analysis. Research Report RR-3595, INRIA, December 1998. Keyword(s): registration, histology. [bibtex-entry]


  34. Xavier Pennec. Computing the mean of geometric features - Application to the mean rotation. Research Report RR-3371, INRIA, March 1998. Keyword(s): statistics, geometry, uncertainty. [bibtex-entry]


  35. Xavier Pennec. Registration of Uncertain Geometric Features: Estimating the Pose and its Accuracy. Technical report AIM-1623, MIT Artificial Intelligence Lab, January 1998. Keyword(s): registration, matching, uncertainty, geometry, validation, statistics. [bibtex-entry]


  36. Xavier Pennec. Toward a generic framework for recognition based on uncertain geometric features. Memo AIM-1622, MIT Artificial Intelligence Lab, January 1998. Note: Published in Videre 1(2), 1998, p.58-87. Keyword(s): registration, matching, uncertainty. [bibtex-entry]


  37. Alexis Roche, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. Multimodal Image Registration by Maximization of the Correlation Ratio. Research Report RR-3378, INRIA, August 1998. Note: Published in MICCAI'98, Cambridge, USA, LNCS 1496, p. 1115-1124. Keyword(s): registration, matching, multimodal, correlation ratio. [bibtex-entry]


  38. Xavier Pennec and Nicholas Ayache. Randomness and Geometric Features in Computer Vision. Research Report RR-2820, INRIA, March 1996. Note: Published in J. of Math. Imag. and Vision 9(1), July 1998, p. 49-67. Keyword(s): geometry, statistics, uncertainty, Riemannian geometry. [bibtex-entry]


  39. Xavier Pennec and Jean-Philippe Thirion. Validation of 3D Registration Methods based on Points and Frames. Research Report RR-2470, INRIA, January 1995. Note: Published in Int. J. of Comp. Vision 25(3), 1997, p. 203-229. Keyword(s): registration, matching, uncertainty, validation. [bibtex-entry]


  40. Xavier Pennec and Nicholas Ayache. An ${{\cal O}}(n^2)$ Algorithm for 3D Substructure Matching of Proteins. Research report RR-2274, INRIA, May 1994. Note: Published in Bioinformatics 14(6), 1998, p. 516-522. Keyword(s): registration, matching, protein structure. [bibtex-entry]


  41. Xavier Pennec. Correctness and Robustness of 3D Rigid Matching with Bounded Sensor Error. Research report RR-2111, INRIA, November 1993. Keyword(s): registration, matching, uncertainty. [bibtex-entry]


  42. Xavier Pennec. Etude d'améliorations possibles de techniques neuro-mimétiques appliquées à la reconnaissance de caractères manuscrits. Rapport interne, ONERA - DMI/GIA, 1992. Note: Also in Rapport de stage d'option, Ecole Polytechnique. [bibtex-entry]


Miscellaneous

  1. C Brun, N Lepore, X Pennec, YY Chou, AD Lee, M Barysheva, K McMahon, GI de Zubicaray, M Wright, AW Toga, and PM Thompson. Volumetric Differences in Brain Structure in Identical and Fraternal Twins Computed using Riemannian Tensor-Based Morphometry. 13th Annual Meeting of the Organization for Human Brain Mapping (OHBM), June 15-19, 2008. [bibtex-entry]


  2. Tommaso Mansi, Maxime Sermesant, Martin Huber, Andrew Taylor, Giacomo Pongiglione, Xavier Pennec, and Younes Boudjemline. Modélisation électromécanique du coeur et analyse d'images. Archives de Pédiatrie - Congrès des Sociétés Françaises Médico-chirurgicales Pédiatriques, February 2008. Note: Archives de Pédiatrie 15(5):1032 -- Special award for best presentation. [bibtex-entry]


  3. Javier Rojas Balderrama, Diane Lingrand, Erik Pernod, Jean-Christophe Souplet, Xavier Pennec, and Johan Montagnat. NeuroLOG: neuroscience application workflows execution on the EGEE grid. Enabling Grid for E-sciencE (EGEE) conference, September 2008. Note: EGEE'08 best paper award. [bibtex-entry]


  4. Xavier Pennec. From Riemannian Geometry to Computational Anatomy of the Brain. ERCIM News No.69, p.15-16, January 2007. Note: Special issue on the Digital Patient. [bibtex-entry]


  5. Xavier Pennec and Pierre Fillard. Avons-nous tous le même cerveau?. In Voir l'invisible, p.112-113, Omniscience, December 2007. Note: ISBN 978-2-916097-13-8. [bibtex-entry]


  6. Xavier Pennec and Pierre Fillard. Les autoroutes de l'information neuronale. In Voir l'invisible, p.116-117, Omniscience, December 2007. Note: ISBN 978-2-916097-13-8. [bibtex-entry]


  7. Tom Vercauteren, Aymeric Perchant, Nicholas Ayache, Xavier Pennec, and Grégoire Malandain. Robust Mosaicing Method with Correction of Motion Distorsions and Tissue Deformations for In Vivo Fibered Microscopy. US patent filing (02/08/2007), August 2007. [bibtex-entry]


  8. Pierre Fillard, Nicolas Toussaint, and Xavier Pennec. MedINRIA: DT-MRI Processing and Visualization Software, November 2006. Note: Guest paper at the Similar Tensor Workshop, Las Palmas, Spain. [bibtex-entry]


  9. Xavier Pennec. A European paediatric platform. INédit 56, p.4, November 2006. [bibtex-entry]


  10. Vincent Arsigny, Xavier Pennec, Pierre Fillard, and Nicholas Ayache. Dispositif perfectionné de traitement ou de production d'images de tenseurs. French patent filing number 0503483, April 2005. [bibtex-entry]


  11. Ignacio Blanquer, Vincent Hernandez, Guy Lonsdale, Kevin Dean, Sharon Lloyd, Richard McClatchey, Johan Montagnat, Mike Brady, Xavier Pennec, Howard Bolofsky, Chris Jones, Martin Hofmann, Tony Solmonides, Ilidio C. Oliveira, Juan Pedro Sanchez, Victoria Lopez, George De Moor, Brecht Claerhout, and Jean A.M. Harveg. HealthGrid White Paper: http://whitepaper.healthgrid.org/. Edited by Cisco System. Also in Studies in Health Technolgy and Informatics volume 112, 2005, p.249-321 (PMID: 15923733), September 2004. [Annotation] [bibtex-entry]


  12. Xavier Pennec. Geodesics for statistics. INédit 43, p.6, March 2004. [bibtex-entry]


  13. Alexis Roche, Grégoire Malandain, Nicholas Ayache, and Xavier Pennec. Electronic device for automatic registration of images. US patent No US 6,539,127 B1, Mars 25, 2003, March 2003. [bibtex-entry]


  14. D. Etienne, A. Stankoff, X. Pennec, S. Granger, A. Lacan, and R. Derycke. A new approach for dental Implant aided surgery. 4th Congresso Panamericano de Periodontologia, 17-19 august 2000, Santiago, Chili, 2000. Keyword(s): registration, odontology. [bibtex-entry]


  15. Alexis Roche, Grégoire Malandain, Nicholas Ayache, and Xavier Pennec. Dispositif électronique de recalage automatique d'images. French patent No FR 98 09649, Bulletin officiel de la propriété intellectuelle no 00/39 du Sept. 09 2000. European extension No 99401881, September 2000. [bibtex-entry]


  16. Xavier Pennec. Traitement de l'erreur dans les méthodes de Hachage géométrique et d'Alignement, une étude théorique. Rapport de DEA, DEA Informatique, Mathématique et Applications, École Polytechnique, ENS Ulm, July 1993. Keyword(s): registration, matching, uncertainty. [bibtex-entry]


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Last modified: Fri Mar 19 14:51:30 2010
Author: oclatz.