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Publications of Nicholas Ayache

Books and proceedings

1. N. Paragios, J. Duncan, and Nicholas Ayache, editors. Biomedical Image Analysis: Methodologies And Applications. Springer, 1st edition edition, 2011. Note: 590 pages. ISBN: 978-0-387-09748-0. HAL ID: inria-00616178. [bibtex-entry]



2. Nicholas Ayache, Hervé Delingette, and Maxime Sermesant, editors. Functional Imaging and Modeling of the Heart - FIMH 2009, volume 5528 of LNCS, Nice, France, June 2009. Springer. Note: 537 pages. [bibtex-entry]



3. Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007 - Part I, volume 4791 of LNCS, Brisbane, Australia, October 2007. Springer. Note: 1001 pages. [bibtex-entry]



4. Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007 - Part II, volume 4792 of LNCS, Brisbane, Australia, October 2007. Springer. Note: 977 pages. [bibtex-entry]



5. N. Ayache, editor. Computational Models for the Human Body, Handbook of Numerical Analysis (Ph. Ciarlet series editor). Elsevier, 2004. Note: 670 pages. [bibtex-entry]



6. N. Ayache and H. Delingette, editors. Proceedings of the International Symposium on Surgery Simulation and Soft Tissue Modeling, volume 2673 of Lecture Notes in Computer Science, Juan-les-Pins, France, June 2003. Springer. [bibtex-entry]



7. N. Ayache, editor. First international conference on computer vision, virtual reality and robotics in medicine, CVRMed'95, volume 905 of Lecture Notes in Computer Science, Nice, France, April 1995. Springer. [bibtex-entry]



8. N. Ayache. Artificial Vision for Mobile robots - Stereo-vision and Multisensor Perception. MIT-Press, 1991. Note: 342 pages. [bibtex-entry]



9. Nicholas Ayache. Vision Stéréoscopique et Perception Multisensorielle: Application à la robotique mobile. Inter-Editions (MASSON), 1989. Note: 314 pages, in French. [bibtex-entry]

Articles in journal, book chapters

1. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. A Smart Atlas for Endomicroscopy using Automated Video Retrieval. Medical Image Analysis, 15(4):460-476, August 2011. HAL ID: inria-00616190. Keyword(s): Content-Based Video Retrieval (CBVR), Endomicroscopy, Bag-of-Visual-Words (BoW), Video-mosaicing. [Abstract] [bibtex-entry]



2. Nicholas Ayache, Olivier Clatz, Hervé Delingette, Grégoire Malandain, Xavier Pennec, and Maxime Sermesant. Vers un patient numérique personnalisé pour le diagnostic et la thérapie guidés par l'image. Médecine / Sciences, 27:208-213, March 2011. HAL ID: inria-00616192. [bibtex-entry]



3. N. Ayache, H. Delingette, and M. Sermesant. Le coeur numérique personnalisé. Bulletin de l'Académie Nationale de Médecine, 195(8), November 2011. [bibtex-entry]



4. O. Camara, M. Sermesant, P. Lamata, L. Wang, M. Pop, J. Relan, M. De Craene, H. Delingette, H. Liu, S. Niederer, A. Pashaei, G. Plank, D. Romero, R. Sebastian, K.C.L. Wong, H. Zhang, N. Ayache, A.F. Frangi, P. Shi, N.P. Smith, and G.A. Wright. Inter-Model Consistency and Complementarity: Learning from ex-vivo Imaging and Electrophysiological Data towards an Integrated Understanding of Cardiac Physiology. Progress in Biophysics and Molecular Biology, 107:122-133, 2011. HAL ID: inria-00616197. [bibtex-entry]



5. H. Delingette, F. Billet, K. C. L. Wong, M. Sermesant, K. Rhode, M. Ginks, C. A. Rinaldi, R. Razavi, and N. Ayache. Personalization of Cardiac Motion and Contractility from Images using Variational Data Assimilation. IEEE transactions on bio-medical engineering, 2011. Note: In Press. HAL ID: inria-00616183. [bibtex-entry]



6. Stanley Durrleman, Pierre Fillard, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Registration, Atlas Estimation and Variability Analysis of White Matter Fiber Bundles Modeled as Currents. NeuroImage, 55(3):1073-1090, 2011. ISSN: 1053-8119. HAL ID: inria-00541930. Keyword(s): Computational Anatomy. [bibtex-entry]



7. Stanley Durrleman, Xavier Pennec, Alain Trouv e, Nicholas Ayache, and Jos e Braga. Comparison of the endocranial ontogenies between chimpanzees and bonobos via temporal regression and spatiotemporal registration. Journal of Human Evolution, pp -, 2011. Note: To appear. ISSN: 0047-2484. Keyword(s): Endocranium, Virtual anthropology, Ontogeny, Shape regression, Spatiotemporal registration. [bibtex-entry]



8. Pierre Fillard, Xavier Pennec, Paul M. Thompson, and Nicholas Ayache. Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines. NeuroImage, 2011. Note: Accepted for publication. HAL ID: inria-00616179. [bibtex-entry]



9. Ezequiel Geremia, Olivier Clatz, Bjoern H. Menze, Ender Konukoglu, Antonio Criminisi, and Nicholas Ayache. Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel Magnetic Resonance Images. NeuroImage, 57(2):378-90, July 2011. HAL ID: inria-00616194. [bibtex-entry]



10. E. Konukoglu, J. Relan, U. Cilingir, B. Menze, P. Chinchapatnam, A. Jadidi, H. Cochet, M. Hocini, H. Delingette, P. Jaïs, M. Haïssaguerre, N. Ayache, and M. Sermesant. Efficient Probabilistic Model Personalization Integrating Uncertainty on Data and Parameters: Application to Eikonal-Diffusion Models in Cardiac Electrophysiology. Progress in Biophysics and Molecular Biology, 2011. Note: Accepted. HAL ID: inria-00616198. [bibtex-entry]



11. Tommaso Mansi, Xavier Pennec, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. iLogDemons: A Demons-Based Registration Algorithm for Tracking Incompressible Elastic Biological Tissues. International Journal of Computer Vision, 92(1):92-111, 2011. HAL ID: inria-00616187. [bibtex-entry]



12. Tommaso Mansi, Ingmar Voigt, Benedetta Leonardi, Xavier Pennec, Stanley Durrleman, Maxime Sermesant, Hervé Delingette, Andrew M. Taylor, Younes Boudjemline, Giacomo Pongiglione, and Nicholas Ayache. A Statistical Model for Quantification and Prediction of Cardiac Remodelling: Application to Tetralogy of Fallot. IEEE Transactions on Medical Imaging, 9(30):1605-1616, September 2011. HAL ID: inria-00616185. [bibtex-entry]



13. Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Gregoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie R. McClelland, Sebastien Ourselin, Sascha E.A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, Rene Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas Tustison, Brian Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, and Josien P.W. Pluim. Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge. IEEE Trans Med Imaging, 30(11):1901-20, November 2011. HAL ID: inserm-00607794. [Abstract] [bibtex-entry]



14. E. Pernod, M. Sermesant, E. Konukoglu, J. Relan, H. Delingette, and N. Ayache. A Multi-Front Eikonal Model of Cardiac Electrophysiology for Interactive Simulation of Radio-Frequency Ablation. Computers and Graphics, 35:431-440, 2011. HAL ID: inria-00616180. [bibtex-entry]



15. K.M Pohl, E. Konukoglu, S. Novellas, N. Ayache, A. Fedorov, I.-F. Talos, A. Golby, W.M. Wells, R. Kikinis, and P.M. Black. A New Metric for Detecting Change in Slowly Evolving Brain Tumors: Validation in Meningioma Patients. Neurosurgery, 68(1 Suppl Operative):225-33, March 2011. HAL ID: inria-00616196. [bibtex-entry]



16. Jatin Relan, Phani Chinchapatnam, Maxime Sermesant, Kawal Rhode, Matt Ginks, Hervé Delingette, C. Aldo Rinaldi, Reza Razavi, and Nicholas Ayache. Coupled Personalization of Cardiac Electrophysiology Models for Prediction of Ischaemic Ventricular Tachycardia. Journal of the Royal Society Interface Focus, 1(3):396-407, 2011. HAL ID: inria-00616188. [bibtex-entry]



17. Jatin Relan, Mihaela Pop, Hervé Delingette, Graham Wright, Nicholas Ayache, and Maxime Sermesant. Personalisation of a Cardiac Electrophysiology Model using Optical Mapping and MRI for Prediction of Changes with Pacing. IEEE Transactions on Bio-Medical Engineering, 58(12):3339-3349, 2011. HAL ID: inria-00616184. [bibtex-entry]



18. M. Sermesant, R. Chabiniok, P. Chinchapatnam, T. Mansi, F. Billet, P. Moireau, J.M. Peyrat, K. Wong, J. Relan, K. Rhode, M. Ginks, P. Lambiase, H. Delingette, M. Sorine, C.A. Rinaldi, D. Chapelle, R. Razavi, and N. Ayache. Patient-specific electromechanical models of the heart for the prediction of pacing acute effects in CRT: A preliminary clinical validation. Medical Image Analysis, 2011. Note: In press. HAL ID: inria-00616191. [bibtex-entry]



19. N. Smith, A. de Vecchi, M. McCormick, D. Nordsletten, O. Camara, A.F. Frangi, H. Delingette, M. Sermesant, J. Relan, N. Ayache, M. W. Krueger, W. Schulze, R. Hose, I. Valverde, P. Beerbaum, C. Staicu, M. Siebes, J. Spaan, P. Hunter, J. Weese, H. Lehmann, D. Chapelle, and R. Razavi. euHeart: Personalized and integrated cardiac care using patient-specific cardiovascular modelling. Journal of the Royal Society Interface Focus, 1(3):349-364, 2011. ISSN: 2042-8898. HAL ID: inria-00616189. [bibtex-entry]



20. B H Menze, E Stretton, E Konukoglu, and N. Ayache. Image-based modeling of tumor growth in patients with glioma.. In C S Garbe, R Rannacher, U Platt, and T Wagner, editors, Optimal control in image processing. Springer, Heidelberg/Germany, 2011. [bibtex-entry]



21. Damien Galanaud, Stéphane Haik, Marius George Linguraru, Jean-Philippe Ranjeva, Baptiste Faucheux, Elsa Kaphan, Nicholas Ayache, Jacques Chiras, Patrick Cozzone, Didier Dormont, and Jean-Philippe Brandel. Combined diffusion imaging and MR Spectroscopy in Human Prion Diseases. AJNR. American journal of neuroradiology, 31(7):1311-8, 2010. [Abstract] [bibtex-entry]



22. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating Glioma Invasion Margin in Brain Magnetic Resonance Images: Suggesting New Irradiation Margins. Medical Image Analysis, 14(2):111-125, 2010. [bibtex-entry]



23. Ender Konukoglu, Olivier Clatz, Bjoern H. Menze, Marc-André Weber, Bram Stieltjes, Emmanuel Mandonnet, Hervé Delingette, and Nicholas Ayache. Image Guided Personalization of Reaction-Diffusion Type Tumor Growth Models Using Modified Anisotropic Eikonal Equations. IEEE Transactions on Medical Imaging, 29(1):77-95, 2010. [bibtex-entry]



24. Jean-Marc Peyrat, Hervé Delingette, Maxime Sermesant, Chenyang Xu, and Nicholas Ayache. Registration of 4D Cardiac CT Sequences Under Trajectory Constraints With Multichannel Diffeomorphic Demons. IEEE Transactions on Medical Imaging, 29(7):1351-1368, July 2010. [bibtex-entry]



25. Boon Thye Thomas Yeo, Mert Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl, and Polina Golland. Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration. IEEE Transactions on Medical Imaging, 29(3):650-668, March 2010. Note: PMID:19709963. [Abstract] [bibtex-entry]



26. Ender Konukoglu, Olivier Clatz, Hervé Delingette, and Nicholas Ayache. Personalization of Reaction-Diffusion Tumor Growth Models in MR Images: Application to Brain Gliomas Characterization and Radiotherapy Planning. In Thomas S. Deisboeck and Georgios Stamatakos, editors, Multiscale Cancer Modeling, Chapman & Hall/CRC Mathematical & Computational Biology. CRC Press, December 2010. [bibtex-entry]



27. Vincent Arsigny, Olivier Commowick, Nicholas Ayache, and Xavier Pennec. A Fast and Log-Euclidean Polyaffine Framework for Locally Linear Registration. Journal of Mathematical Imaging and Vision, 33(2):222-238, 2009. [bibtex-entry]



28. Éric Bardinet, Manik Bhattacharjee, Didier Dormont, Bernard Pidoux, Grégoire Malandain, Michael Schupbach, Nicholas Ayache, Philippe Cornu, Yves Agid, and Jerome Yelnik. A three-dimensional histological atlas of the human basal ganglia. II. Atlas deformation strategy and evaluation in deep brain stimulation for Parkinson disease.. Journal of Neurosurgery, 110(2):208-19, February 2009. Keyword(s): Basal Ganglia, pathology, Brain Mapping, methods, Deep Brain Stimulation, methods, Humans, Image Interpretation Computer-Assisted, methods, Imaging Three-Dimensional, methods, Magnetic Resonance Imaging, methods, Medical Illustration, Microelectrodes, Microscopy, Parkinson Disease, pathology, Red Nucleus, pathology, Sensitivity and Specificity, Substantia Nigra, pathology, Subthalamic Nucleus, pathology. [Abstract] [bibtex-entry]



29. Jaydev P. Desai and Nicholas Ayache. Editorial: Special Issue on Medical Robotics. International Journal of Robotics Research, 28(9):1099-1100, 2009. [bibtex-entry]



30. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Statistical Models on Sets of Curves and Surfaces based on Currents. Medical Image Analysis, 13(5):793-808, October 2009. [bibtex-entry]



31. Heike Hufnagel, Jan Ehrhardt, Xavier Pennec, Nicholas Ayache, and Heinz Handels. Computation of a Probabilistic Statistical Shape Model in a Maximum-a-posteriori Framework. Methods of Information in Medicine, 48(4):314-319, 2009. [bibtex-entry]



32. S. Nicolau, Xavier Pennec, Luc Soler, X. Buy, A. Gangi, Nicholas Ayache, and J. Marescaux. An Augmented Reality System for Liver Thermal Ablation: Design and Evaluation on Clinical Cases. Medical Image Analysis, 13(3):494-506, June 2009. [bibtex-entry]



33. Mihaela Pop, Maxime Sermesant, D Lepiller, M V Truong, Elliot McVeigh, Eugene Crystal, Alexander Dick, Hervé Delingette, Nicholas Ayache, and Graham Wright. Fusion of optical imaging and MRI for the evaluation and adjustment of macroscopic models of cardiac electrophysiology: A feasibility study. Medical Image Analysis, 13(2):370-80, April 2009. [bibtex-entry]



34. Jean-Christophe Souplet, Christine Lebrun, Stéphane Chanalet, Nicholas Ayache, and Grégoire Malandain. Revue des approches de segmentation des lésions de sclérose en plaques dans les séquences conventionnelles IRM. Revue Neurologique, 165(1):7-14, 2009. Note: In french. [bibtex-entry]



35. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Diffeomorphic Demons: Efficient Non-parametric Image Registration. NeuroImage, 45(1, Supp.1):S61-S72, March 2009. HAL ID: inserm-00349600. [bibtex-entry]



36. Boon Thye Thomas Yeo, Tom Vercauteren, Pierre Fillard, Jean-Marc Peyrat, Xavier Pennec, Polina Golland, Nicholas Ayache, and Olivier Clatz. DT-REFinD: Diffusion Tensor Registration with Exact Finite-Strain Differential. IEEE Transactions on Medical Imaging, 28(12):1914-1928, December 2009. Note: PMID:19556193. HAL ID: inria-00502720. [bibtex-entry]



37. Nicholas Ayache, Olivier Clatz, Hervé Delingette, Grégoire Malandain, Xavier Pennec, and Maxime Sermesant. Asclepios: a Research Project-Team at INRIA for the Analysis and Simulation of Biomedical Images. In Y. Bertot, G. Huet, J.-J. Lévy, and G. Plotkin, editors, From semantics to computer science: essays in honor of Gilles Kahn, pages 415-436. Cambridge University Press, 2009. [bibtex-entry]



38. Tommaso Mansi, Barbara André, Michael Lynch, Maxime Sermesant, Hervé Delingette, Younes Boudjemline, and Nicholas Ayache. Virtual Pulmonary Valve Replacement Interventions with a Personalised Cardiac Electromechanical Model. In Nadia Magnenat-Thalmann, Jian J. Zhang, and David D. Feng, editors, Recent Advances in the 3D Physiological Human, pages 201-210. Springer, November 2009. [bibtex-entry]



39. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, and Nicholas Ayache. Articulated Spine Models for 3D Reconstruction from Partial Radiographic Data. IEEE Transactions on Bio-Medical Engineering, 55(11):2565-2574, November 2008. [bibtex-entry]



40. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, and Nicholas Ayache. Geometric Variability of the Scoliotic Spine using Statistics on Articulated Shape Models. IEEE Transactions on Medical Imaging, 27(4):557-568, 2008. [bibtex-entry]



41. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, and Nicholas Ayache. Principal Deformations Modes of Articulated Models for the Analysis of 3D Spine Deformities. Electronic Letters on Computer Vision and Image Analysis, 7(4):13-31, December 2008. [bibtex-entry]



42. Pierre-Yves Bondiau, Olivier Clatz, Maxime Sermesant, Pierre-Yves Marcy, Hervé Delingette, Marc Frenay, and Nicholas Ayache. Biocomputing: numerical simulation of glioblastoma growth using diffusion tensor imaging. Physics in Medicine and Biology, 53(4):879-93, February 2008. [bibtex-entry]



43. Olivier Commowick, Vincent Arsigny, Aurélie Isambert, Jimena Costa, Frédéric Dhermain, François Bidault, Pierre-Yves Bondiau, Nicholas Ayache, and Grégoire Malandain. An efficient locally affine framework for the smooth registration of anatomical structures. Medical Image Analysis, 12(4):427-41, August 2008. Keyword(s): Algorithms, Brain, anatomy & histology, Diagnostic Imaging, methods, Humans, Image Processing Computer-Assisted, Radiotherapy Planning Computer-Assisted, methods, Sensitivity and Specificity. [Abstract] [bibtex-entry]



44. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Paul Thompson, and Nicholas Ayache. Inferring brain variability from diffeomorphic deformations of currents: an integrative approach. Medical Image Analysis, 12(5):626-637, 2008. [bibtex-entry]



45. S Haik, D Galanaud, MG Linguraru, K Peoc'h, N Privat, BA Faucheux, N Ayache, JJ Hauw, D Dormont, and JP Brandel. In Vivo Detection of Thalamic Gliosis: A Pathoradiologic Demonstration in Familial Fatal Insomnia. Archives of Neurology, 65(4):545-549, April 2008. [Abstract] [bibtex-entry]



46. H. Hufnagel, X. Pennec, J. Ehrhardt, N. Ayache, and H. Handels. Generation of a Statistical Shape Model with Probabilistic Point Correspondences and EM-ICP. International Journal for Computer Assisted Radiology and Surgery, 2(5):265-273, March 2008. [bibtex-entry]



47. M Sermesant, J M Peyrat, P Chinchapatnam, F Billet, T Mansi, K Rhode, H Delingette, R Razavi, and N Ayache. Toward patient-specific myocardial models of the heart. Heart Failure Clinics, 4(3):289-301, July 2008. [bibtex-entry]



48. Ender Konukoglu, Xavier Pennec, Olivier Clatz, and Nicholas Ayache. Tumor Growth Modeling in Oncological Image Analysis. In I. Bankman, editor, Handbook of Medical Image Processing and Analysis - New edition, chapter 18, pages 297-307. Academic Press, December 2008. ISBN: 13: 978-0-12-373904-9. [bibtex-entry]



49. Xavier Pennec, Nicholas Ayache, and Jean-Philippe Thirion. Landmark-based registration using features identified through differential geometry. In I. Bankman, editor, Handbook of Medical Image Processing and Analysis - New edition, chapter 34, pages 565-578. Academic Press, December 2008. ISBN: 13: 978-0-12-373904-9. Keyword(s): registration, matching, validation, uncertainty. [bibtex-entry]



50. Tom Vercauteren, Nicholas Ayache, Nicolas Savoire, Grégoire Malandain, and Aymeric Perchant. Processing of In Vivo Fibered Confocal Microscopy Video Sequences. In Jens Rittscher, Raghu Machiraju, and Stephen T. C. Wong, editors, Microscopic Image Analysis for Life Science Applications, chapter 19, pages 441-463. Artech House, 2008. [bibtex-entry]



51. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Geometric Means in a Novel Vector Space Structure on Symmetric Positive-Definite Matrices. SIAM Journal on Matrix Analysis and Applications, 29(1):328-347, 2007. Keyword(s): DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics. [bibtex-entry]



52. Olivier Clatz, Stéphane Litrico, Hervé Delingette, Philippe Paquis, and Nicholas Ayache. Dynamic Model of Communicating Hydrocephalus for Surgery Simulation. IEEE Transactions on Bio-Medical Engineering, 54(4):755-758, April 2007. [bibtex-entry]



53. Julien Dauguet, Thierry Delzescaux, Françoise Condé, Jean-François Mangin, Nicholas Ayache, Philippe Hantraye, and Vincent Frouin. Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain. Journal of Neuroscience Methods, 164(1):191-204, 2007. [bibtex-entry]



54. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Kiralee M. Hayashi, Paul M. Thompson, and Nicholas Ayache. Measuring Brain Variability by Extrapolating Sparse Tensor Fields Measured on Sulcal Lines. NeuroImage, 34(2):639-650, January 2007. Note: Also as INRIA Research Report 5887, April 2006. PMID: 17113311. HAL ID: inria-00502521. [bibtex-entry]



55. Pierre Fillard, Xavier Pennec, Vincent Arsigny, and Nicholas Ayache. Clinical DT-MRI Estimation, Smoothing and Fiber Tracking with Log-Euclidean Metrics. IEEE Transactions on Medical Imaging, 26(11):1472-1482, November 2007. HAL ID: inria-00502645. [bibtex-entry]



56. Marius G. Linguraru, Miguel A. González Ballester, and Nicholas Ayache. Deformable Atlases for the Segmentation of Internal Brain Nuclei in Magnetic Resonance Imaging. International Journal of Computers, Communication and Control, 2(1):26-36, 2007. [bibtex-entry]



57. Marius George Linguraru, Tom Vercauteren, Mauricio Reyes Aguirre, Miguel Ángel González Ballester, and Nicholas Ayache. Segmentation Propagation from Deformable Atlases for Brain Mapping and Analysis. Brain Research Journal, 1(4):269-287, 2007. [bibtex-entry]



58. Jean-Marc Peyrat, Maxime Sermesant, Xavier Pennec, Hervé Delingette, Chenyang Xu, Eliot R. McVeigh, and Nicholas Ayache. A Computational Framework for the Statistical Analysis of Cardiac Diffusion Tensors: Application to a Small Database of Canine Hearts. IEEE Transactions on Medical Imaging, 26(11):1500-1514, November 2007. [bibtex-entry]



59. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Grégoire Malandain, Sébastien Ourselin, Dominique Tandé, Carine Karachi, Nicholas Ayache, Philippe Cornu, and Yves Agid. A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data. NeuroImage, 34(2):618-38, January 2007. [Abstract] [bibtex-entry]



60. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Log-Euclidean Metrics for Fast and Simple Calculus on Diffusion Tensors. Magnetic Resonance in Medicine, 56(2):411-421, August 2006. HAL ID: inria-00502678. Keyword(s): DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics. [bibtex-entry]



61. Christophe Blondel, Grégoire Malandain, Régis Vaillant, and Nicholas Ayache. Reconstruction of Coronary Arteries from a Single Rotational X-Ray Projection Sequence. IEEE Transactions on Medical Imaging, 25(5):653-663, May 2006. Keyword(s): Angiocardiography, Coronarography, Image Motion Analysis, Image Reconstruction, Tomography. [Abstract] [bibtex-entry]



62. Olivier Clatz, Emmanuel Mandonnet, Stéphane Chanalet, Christine Lebrun, Ender Konukoglu, Hervé Delingette, Nicholas Ayache, and Pierre-Yves Bondiau. Modèles Biomathématiques de Croissance Des Gliomes : Recherche en Informatique et Perspectives en Neuro-oncologie. Neurologies, 9(93):665-667, 2006. [bibtex-entry]



63. Hervé Delingette and Nicholas Ayache. La simulation de Chirurgie Hépatique. Pour la science, 52(52):106-109, July 2006. Keyword(s): Simulation. [bibtex-entry]



64. Hervé Delingette, Xavier Pennec, Luc Soler, Jacques Marescaux, and Nicholas Ayache. Computational Models for Image Guided, Robot-Assisted and Simulated Medical Interventions. Proceedings of the IEEE, 94(9):1678- 1688, September 2006. [bibtex-entry]



65. M.G. Linguraru, N. Ayache, E. Bardinet, M.A. González Ballester, D. Galanaud, S. Haïk, B.A. Faucheux, J.J. Hauw, P. Cozzone, D. Dormont, and J.P. Brandel. Differentiation of sCJD and vCJD Forms by Automated Analysis of Basal Ganglia Intensity Distribution in Multisequence MRI of the Brain - Definition and Evaluation of New MRI-based Ratios. IEEE Transactions on Medical Imaging, 25(8):1052-1067, 2006. HAL ID: hal-00092290. [bibtex-entry]



66. Valérie Moreau-Villéger, Hervé Delingette, Maxime Sermesant, Hiroshi Ashikaga, Elliot McVeigh, and Nicholas Ayache. Building Maps of Local Apparent Conductivity of the Epicardium with a 2D Electrophysiological Model of the Heart. IEEE Transactions on Bio-Medical Engineering, 53(8):1457-1466, August 2006. [bibtex-entry]



67. Xavier Pennec, Pierre Fillard, and Nicholas Ayache. A Riemannian Framework for Tensor Computing. International Journal of Computer Vision, 66(1):41-66, January 2006. Note: A preliminary version appeared as INRIA Research Report 5255, July 2004. Keyword(s): Tensors, regularization, PDE, geometry, Riemannian geometry. [Abstract] [bibtex-entry]



68. Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. An Electromechanical Model of the Heart for Image Analysis and Simulation. IEEE Transactions on Medical Imaging, 25(5):612-625, 2006. [bibtex-entry]



69. Tom Vercauteren, Aymeric Perchant, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy. Medical Image Analysis, 10(5):673-692, October 2006. Note: Annual Medical Image Analysis (MedIA) Best Paper Award 2006. PMID: 16887375. HAL ID: inria-00163961. [bibtex-entry]



70. Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Polyrigid and Polyaffine Transformations: a Novel Geometrical Tool to Deal with Non-Rigid Deformations - Application to the registration of histological slices. Medical Image Analysis, 9(6):507-523, December 2005. Keyword(s): Non-rigid registration, Histological slices, Polyaffine transformations, Ordinary differential equations. [bibtex-entry]



71. Pierre-Yves Bondiau, Gregoire Malandain, Stephane Chanalet, Pierre-Yves Marcy, Jean-Louis Habrand, Francois Fauchon, Philippe Paquis, Adel Courdi, Olivier Commowick, Isabelle Rutten, and Nicholas Ayache. Atlas-based automatic segmentation of MR images: validation study on the brainstem in radiotherapy context. Int J Radiat Oncol Biol Phys, 61(1):289-98, January 2005. Keyword(s): Algorithms, Anatomical Atlas, methods, Brain Neoplasms, pathology, Brain Stem, anatomy & histology, Humans, Image Interpretation Computer-Assisted, methods, Magnetic Resonance Imaging, methods, Medical Illustration, Observer Variation, Reproducibility of Results, Sensitivity and Specificity. [Abstract] [bibtex-entry]



72. Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Ron Kikinis, Ferenc Jolesz, Nicholas Ayache, and Simon Warfield. Robust Non-Rigid Registration to Capture Brain Shift from Intra-Operative MRI. IEEE Transactions on Medical Imaging, 24(11):1417-1427, Nov. 2005. Keyword(s): Non-rigid registration, intra-operative magnetic resonance imaging, finite element model, brain shift. [Abstract] [bibtex-entry]



73. Olivier Clatz, Maxime Sermesant, Pierre-Yves Bondiau, Hervé Delingette, Simon K. Warfield, Grégoire Malandain, and Nicholas Ayache. Realistic Simulation of the 3D Growth of Brain Tumors in MR Images Coupling Diffusion with Mass Effect. IEEE Transactions on Medical Imaging, 24(10):1334-1346, October 2005. Keyword(s): Tumor, brain, growth, model, simulation. [Abstract] [bibtex-entry]



74. H. Delingette and N. Ayache. Hepatic Surgery Simulation. Communications of the ACM, 48(2):31-36, February 2005. [bibtex-entry]



75. C. Forest, H. Delingette, and N. Ayache. Removing Tetrahedra from manifold tetrahedralisation : application to real-time surgical simulation. Medical Image Analysis, 9(2):113-122, April 2005. Keyword(s): Surgical simulation, Topological modifications, Manifold meshes. [Abstract] [bibtex-entry]



76. Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, and Nicholas Ayache. An augmented reality system to guide radio-frequency tumor ablation. Computer Animation and Virtual World (previously the Journal of Visualization and Computer Animation), 16(1):1-10, 2005. [bibtex-entry]



77. M. Sermesant, K. Rhode, G. Sanchez-Ortiz, O. Camara, R. Andriantsimiavona, S. Hegde, D. Rueckert, P. Lambiase, C. Bucknall, E. Rosenthal, H. Delingette, D. Hill, N. Ayache, and R. Razavi. Simulation of Cardiac Pathologies using an Electromechanical Biventricular Model and XMR Interventional Imaging. Medical Image Analysis, 9(5):467-480, 2005. [bibtex-entry]



78. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. A Grid Service for the Interactive Use of a Parallel Non-Rigid Registration Algorithm of Medical Images. Methods of Information in Medicine, 44(2), 2005. Keyword(s): grid service, registration, non-rigid, parallel. [bibtex-entry]



79. Xavier Pennec, Alexis Roche, Pascal Cathier, and Nicholas Ayache. Non-Rigid MR/US Registration for Tracking Brain Deformations. In R.S. Blum and Zh. Liu, editors, Multi-Sensor Image Fusion and Its Applications, volume 26 of Signal Processing and Communications, chapter 4, pages 107-143. CRC Press - Taylor and Francis, July 2005. Keyword(s): registration, matching, ultrasound, motion tracking, deformations, magnetic resonance, correlation ratio, robust estimation, multimodal. [bibtex-entry]



80. Christophe Blondel, Régis Vaillant, Grégoire Malandain, and Nicholas Ayache. 3-D tomographic reconstruction of coronary arteries using a precomputed 4-D motion field. Physics in Medicine and Biology, 49(11):2197-2208, 2004. [bibtex-entry]



81. P.Y. Bondiau, G. Malandain, S. Chanalet, P.Y. Marcy, C. Foa, and N. Ayache. Traitement des images et radiothérapie. Cancer radiothérapie, 8(2):120-129, 2004. [Abstract] [bibtex-entry]



82. P. Cachier and N. Ayache. Isotropic energies, filters and splines for vectorial regularization. Journal of Mathematical Imaging and Vision, 20(3):251-265, May 2004. Keyword(s): vector field regularization, non-rigid registration, convolution filter, spline. [bibtex-entry]



83. Miguel Angel González Ballester, Xavier Pennec, Marius George Linguraru, and Nicholas Ayache. Generalized Image Models and Their Application as Statistical Models of Images. Medical Image Analysis, 8(3):361-369, September 2004. [bibtex-entry]



84. C Lebrun, D Rey, S Chanalet, V Bourg, C Bensa, M Chatel, N Ayache, and G Malandain. The contribution of automatic anatomical matching of sequential brain MRI scans in the monitoring of multiple sclerosis lesions. Revue Neurologique, 160(8-9):805-10, September 2004. Note: In French. Keyword(s): multiple sclerosis. [Abstract] [bibtex-entry]



85. A. Pitiot, H. Delingette, P. M. Thompson, and N. Ayache. Expert Knowledge Guided Segmentation System for Brain MRI. NeuroImage, 23(supplement 1):S85-S96, 2004. Note: Special Issue: Mathematics in Brain Imaging. [bibtex-entry]



86. Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, Hervé Delingette, and Jacques Marescaux. Traitement d'images médicales pour la planification, la simulation et l'aide intra-opératoire des actes chirurgicaux. La Revue de l'Electricité et de l'Electronique, pp 64-71, janvier 2004. [bibtex-entry]



87. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Grid Powered Nonlinear Image Registration with Locally Adaptive Regularization. Medical Image Analysis, 8(3):325-342, September 2004. Keyword(s): non-rigid registration, adaptive regularization, grid, parallel. [bibtex-entry]



88. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Grid-Enabled Non-Rigid Registration of Medical Images. Parallel Processing Letters, 14(2):197-216, 2004. Keyword(s): grid, non-rigid registration, parallel, cluster. [bibtex-entry]



89. H. Delingette and N. Ayache. Soft Tissue Modeling for Surgery Simulation. In N. Ayache, editor, Computational Models for the Human Body, Handbook of Numerical Analysis (Ed : Ph. Ciarlet), pages 453-550. Elsevier, 2004. [bibtex-entry]



90. Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, Hervé Delingette, Didier Mutter, and Jacques Marescaux. Traitements d'images médicales pour la planification, la simulation et l'aide intra-opératoire des actes chirurgicaux. In M. Faupel, P. Smigielski, and R. Grzymala, editors, Imagerie et Photonique pour les sciences du vivant et la médecine, pages 19-31. Edition Fontis Media, 2004. ISBN: 2-88476-005-9. [bibtex-entry]



91. N. Ayache. Epidaure: a Research Project in Medical Image Analysis, Simulation and Robotics at INRIA. IEEE Transactions on Medical Imaging, 22(10):1185-1201, October 2003. [bibtex-entry]



92. Pascal Cachier, Eric Bardinet, Didier Dormont, Xavier Pennec, and Nicholas Ayache. Iconic Feature Based Nonrigid Registration: The PASHA Algorithm. Computer Vision and Image Understanding, 89(2-3):272-298, Feb.-march 2003. Note: Special Issue on Nonrigid Registration. Keyword(s): registration, matching, similarity measures, deformations. [bibtex-entry]



93. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Création d'un Modèle Biomécanique Spécifique du Cerveau par l'Analyse d'Images et son Application à la Neurochirurgie Stéréotaxique. Mécanique et Industrie, 4(4):429-433, 2003. Note: Numéro spécial CFM 2003. [bibtex-entry]



94. P Hellier, C Barillot, I Corouge, B Gibaud, G Le Goualher, D L Collins, A Evans, G Malandain, N Ayache, G E Christensen, and H J Johnson. Retrospective evaluation of intersubject brain registration. IEEE Transactions on Medical Imaging, 22(9):1120-30, September 2003. HAL ID: inria-00536383. [Abstract] [bibtex-entry]



95. J. Montagnat, M. Sermesant, H. Delingette, G. Malandain, and N. Ayache. Anisotropic filtering for model-based segmentation of 4D cylindrical echocardiographic images. Pattern Recognition Letters, 24(4-5):815-828, February 2003. Note: Special Issue on Ultrasonic Image Processing and Analysis. Keyword(s): anisotropic diffusion, 4D, Heart, segmentation, ultrasound, medical images, motion tracking. [bibtex-entry]



96. Xavier Pennec, Pascal Cachier, and Nicholas Ayache. Tracking Brain Deformations in Time-Sequences of 3D US Images. Pattern Recognition Letters, 24(4-5):801-813, February 2003. Note: Special Issue on Ultrasonic Image Processing and Analysis. Keyword(s): registration, matching, ultrasound, motion tracking, deformations. [bibtex-entry]



97. G. Picinbono, H. Delingette, and N. Ayache. Non-Linear Anisotropic Elasticity for Real-Time Surgery Simulation. Graphical Models, 65(5):305-321, September 2003. Keyword(s): journal, simulation. [bibtex-entry]



98. Maxime Sermesant, Clément Forest, Xavier Pennec, Hervé Delingette, and Nicholas Ayache. Deformable biomechanical models: Application to 4D cardiac image analysis. Medical Image Analysis, 7(4):475-488, December 2003. [bibtex-entry]



99. G. Picinbono, H. Delingette, and N. Ayache. Modèle déformable élastique non-linéaire pour la simulation de chirurgie en temps réel. Les Comptes Rendus de l'Académie des Sciences (CRAS), C.R. Biologies, 325(4):335-344, 2002. Keyword(s): journal, simulation. [bibtex-entry]



100. G. Picinbono, J-C. Lombardo, H. Delingette, and N. Ayache. Improving realism of a surgery simulator: linear anisotropic elasticity, complex interactions and force extrapolation. Journal of Visualisation and Computer Animation, 13(3):147-167, July 2002. Keyword(s): journal, simulation. [bibtex-entry]



101. S. Prima, S. Ourselin, and N. Ayache. Computation of the Mid-Sagittal Plane in 3D Brain Images. IEEE Transactions on Medical Imaging, 21(2):122-138, February 2002. Keyword(s): registration, matching. [bibtex-entry]



102. David Rey, Gérard Subsol, Hervé Delingette, and Nicholas Ayache. Automatic Detection and Segmentation of Evolving Processes in 3D Medical Images: Application to Multiple Sclerosis. Medical Image Analysis, 6(2):163-179, June 2002. Keyword(s): Automation, Brain, pathology, Human, Image Processing Computer-Assisted, methods, Imaging Three-Dimensional, methods, Magnetic Resonance Imaging, methods, Models Neurological, Multiple Sclerosis, diagnosis, Reproducibility of Results, Sensitivity and Specificity, Support Non-U.S. Gov't. [Abstract] [bibtex-entry]



103. N. Ayache. Medical Imaging Informatics. From Digital Anatomy to Virtual Scapels and Image Guided Therapy. In R Haux and C Kulikowski, editors, Medical Imaging Informatics (IMIA Yearbook of Medical Informatics). Schattauer Verlagsgesellschaft mbH, Stuttgart, 2002. ISBN: 3-7945-2193-5. [bibtex-entry]



104. A. Guimond, A. Roche, N. Ayache, and J. Meunier. Multimodal Brain Warping Using the Demons Algorithm and Adaptative Intensity Corrections. IEEE Transactions on Medical Imaging, 20(1):58-69, 2001. Keyword(s): registration, matching, deformations. [Abstract] [bibtex-entry]



105. J. Montagnat, H. Delingette, and N. Ayache. A review of deformable surfaces: topology, geometry and deformation. Image and Vision Computing, 19(14):1023-1040, December 2001. Keyword(s): journal, reconstruction. [bibtex-entry]



106. Sébastien Ourselin, Alexis Roche, Gérard Subsol, Xavier Pennec, and Nicholas Ayache. Reconstructing a 3D Structure from Serial Histological Sections. Image and Vision Computing, 19(1-2):25-31, January 2001. HAL ID: cea-00333669. Keyword(s): registration, matching, histology. [bibtex-entry]



107. Alexis Roche, Xavier Pennec, Grégoire Malandain, and Nicholas Ayache. Rigid Registration of 3D Ultrasound with MR Images: a New Approach Combining Intensity and Gradient Information. IEEE Transactions on Medical Imaging, 20(10):1038-1049, October 2001. HAL ID: cea-00333699. Keyword(s): registration, ultrasound, magnetic resonance, correlation ratio, robust estimation, multimodal. [Abstract] [bibtex-entry]



108. L Soler, H Delingette, G Malandain, J Montagnat, N Ayache, C Koehl, O Dourthe, B Malassagne, M Smith, D Mutter, and J Marescaux. Fully automatic anatomical, pathological, and functional segmentation from CT scans for hepatic surgery. Comput Aided Surg, 6(3):131-42, 2001. Keyword(s): Human, Image Processing Computer-Assisted, methods, Liver, anatomy & histology, Support Non-U.S. Gov't, Surgery Computer-Assisted, Tomography X-Ray Computed. [Abstract] [bibtex-entry]



109. N. Ayache. Imagerie et robotique médicales: du microscope informatique au simulateur de chirurgie. Technique et Science Informatiques, 19(1), January 2000. [bibtex-entry]



110. S. Cotin, H. Delingette, and N. Ayache. A Hybrid Elastic Model allowing Real-Time Cutting, Deformations and Force-Feedback for Surgery Training and Simulation. The Visual Computer, 16(8):437-452, 2000. Keyword(s): journal, simulation. [bibtex-entry]



111. J. Duncan and N. Ayache. Medical Image Analysis: Progress over two decades and the challenges ahead. IEEE Transactions on Pattern Analysis and Machine Intelligence, 22(1):85-106, 2000. [bibtex-entry]



112. K. Krissian, G. Malandain, N. Ayache, R. Vaillant, and Y. Trousset. Model-Based Detection of Tubular Structures in 3D Images. Computer Vision and Image Understanding, 80(2):130-171, 2000. Keyword(s): filtering, vessel detection, multiscale analysis, segmentation. [Abstract] [bibtex-entry]



113. A. Roche, G. Malandain, and N. Ayache. Unifying Maximum Likelihood Approaches in Medical Image Registration. International Journal of Imaging Systems and Technology, 11(1):71-80, 2000. Note: Special Issue on 3D Imaging. HAL ID: cea-00333642. Keyword(s): registration, matching, similarity measures. [bibtex-entry]



114. L Soler, H Delingette, G Malandain, N Ayache, C Koehl, J M Clement, O Dourthe, and J Marescaux. An automatic virtual patient reconstruction from CT-scans for hepatic surgical planning. Stud Health Technol Inform, 70:316-22, 2000. Keyword(s): Computer Graphics, Computer Simulation, Hepatectomy, Human, Image Processing Computer-Assisted, Liver Diseases, radiography, Tomography X-Ray Computed, User-Computer Interface. [Abstract] [bibtex-entry]



115. Xavier Pennec, Nicholas Ayache, and Jean-Philippe Thirion. Landmark-based registration using features identified through differential geometry. In I. Bankman, editor, Handbook of Medical Imaging, chapter 31, pages 499-513. Academic Press, September 2000. Keyword(s): registration, matching, validation, uncertainty. [bibtex-entry]



116. N. Ayache and G. Subsol. El Cerebro in Cuatro Dimensiones. Mundo Cientifico, 203:30-33, July 1999. [bibtex-entry]



117. N. Ayache and G. Subsol. Le cerveau en quatre dimensions. La Recherche, 320:46-49, May 1999. [bibtex-entry]



118. S. Cotin, H. Delingette, and N. Ayache. Real-time elastic deformations of soft tissues for surgery simulation. IEEE Transactions on Visualization and Computer Graphics, 5(1):62-73, January-March 1999. Keyword(s): journal, simulation. [bibtex-entry]



119. Nicholas Ayache. L'analyse automatique des images médicales, état de l'art et perspectives. Annales de l'Institut Pasteur, 9(1):13-21, avril--juin 1998. Note: Numéro spécial sur les progrès récents de l'imagerie médicale. [bibtex-entry]



120. N. Ayache, S. Cotin, H. Delingette, J.-M. Clément, J. Marescaux, and M. Nord. Simulation of Endoscopic Surgery. Journal of Minimally Invasive Therapy and Allied Technologies (MITAT), 7(2):71-77, July 1998. Keyword(s): journal, simulation. [bibtex-entry]



121. Eric Bardinet, Laurent D. Cohen, and Nicholas Ayache. A parametric deformable model to fit unstructured 3D data. Computer Vision and Image Understanding, 71(1):39-54, 1998. [bibtex-entry]



122. Serge Benayoun and Nicholas Ayache. Dense non-rigid motion estimation in sequences of medical images using differential constraints. International Journal of Computer Vision, 26(1):25-40, 1998. Keyword(s): registration, matching, deformations, motion tracking. [bibtex-entry]



123. J. Declerck, J. Feldmar, and N. Ayache. Definition of a four-dimensional continuous planispheric transformation for the tracking and the analysis of left-ventricle motion. Medical Image Analysis, 2(2):197-213, June 1998. Keyword(s): Motion tracking, Heart, 4D. [bibtex-entry]



124. J Marescaux, J M Clement, V Tassetti, C Koehl, S Cotin, Y Russier, D Mutter, H Delingette, and N Ayache. Virtual reality applied to hepatic surgery simulation: the next revolution. Annals of Surgery, 228(5):627-34, November 1998. Keyword(s): Computer Simulation, Digestive System Surgical Procedures, methods, Image Processing Computer-Assisted, Liver, surgery, Support Non-U.S. Gov't, journal, simulation. [Abstract] [bibtex-entry]



125. J Marescaux, J M Clement, M Vix, Y Russier, V Tassetti, D Mutter, S Cotin, and N Ayache. [A new concept in surgery of the digestive tract: surgical procedure assisted by computer, from virtual reality to telemanipulation]. Chirurgie, 123(1):16-24, February 1998. Note: In french. Keyword(s): Anatomy Cross-Sectional, Computer Simulation, English Abstract, Forecasting, Hepatectomy, instrumentation, Human, Image Processing Computer-Assisted, instrumentation, Liver Neoplasms, surgery, Phantoms Imaging, Robotics, instrumentation, Surgical Procedures Operative, trends, User-Computer Interface. [Abstract] [bibtex-entry]



126. Xavier Pennec and Nicholas Ayache. A geometric algorithm to find small but highly similar 3D substructures in proteins. Bioinformatics, 14(6):516-522, 1998. Keyword(s): registration, matching, protein structure. [bibtex-entry]



127. Xavier Pennec and Nicholas Ayache. Uniform distribution, distance and expectation problems for geometric features processing. Journal of Mathematical Imaging and Vision, 9(1):49-67, July 1998. Note: A preliminary version appeared as INRIA Research Report 2820, March 1996.HAL ID: inria-00073871. Keyword(s): statistics, geometry, Riemannian geometry. [bibtex-entry]



128. G. Subsol, J.-Ph. Thirion, and N. Ayache. A Scheme for Automatically Building 3D Morphometric Anatomical Atlases: application to a Skull Atlas. Medical Image Analysis, 2(1):37-60, 1998. Keyword(s): registration, matching, atlas, deformations, Algorithms, Anatomy Artistic, methods, Comparative Study, Craniofacial Abnormalities, pathology, Diagnosis Computer-Assisted, methods, Human, Medical Illustration, Skull, anatomy & histology. [Abstract] [bibtex-entry]



129. Nicholas Ayache, Stephane Cotin, and Hervé Delingette. Surgery Simulation with visual and haptic feedback. In Y. Shirai and S. Hirose, editors, Robotics Research, the Eigth International Symposium, pages 311-316. Springer, 1998. Keyword(s): workshop, simulation. [bibtex-entry]



130. S. Cotin, H. Delingette, N. Ayache, J.M. Clement, J. Marescaux, and M. Nord. Simulation Active de Chirurgie Endoscopique. Revue Européenne de Technologie Biomédicale (RBM), 19(5):167-172, 1997. Keyword(s): journal, simulation. [bibtex-entry]



131. J. Feldmar, N. Ayache, and F. Betting. 3D-2D projective registration of free-form curves and surfaces. Journal of Computer Vision and Image Understanding, 65(3):403-424, 1997. [bibtex-entry]



132. J. Feldmar, J. Declerck, G. Malandain, and N. Ayache. Extension of the ICP Algorithm to Non-Rigid Intensity-Based Registration of 3D Volumes. Computer Vision and Image Understanding, 66(2):193-206, May 1997. Keyword(s): registration, matching, deformations. [bibtex-entry]



133. André Guéziec, Xavier Pennec, and Nicholas Ayache. Medical Image Registration using Geometric Hashing. IEEE Computational Science and Engineering, 4(4):29-41, 1997. Note: Special issue on Geometric Hashing. Keyword(s): registration, matching. [bibtex-entry]



134. J Marescaux, J M Clement, M Nord, Y Russier, V Tassetti, D Mutter, S Cotin, and N Ayache. [A new concept in digestive surgery: the computer assisted surgical procedure, from virtual reality to telemanipulation]. Bull Acad Natl Med, 181(8):1609-21, November 1997. Keyword(s): review, survey, review, survey, Computer Simulation, Digestive System Surgical Procedures, English Abstract, Human, Telemedicine, User-Computer Interface. [Abstract] [bibtex-entry]



135. L Picard, E Maurincomme, M Soderman, J Feldmar, R Anxionnat, L Launay, K Ericson, G Malandain, S Bracard, E Kerrien, O Flodmark, and N Ayache. X-ray angiography in stereotactic conditions: techniques and interest for interventional neuroradiology. Stereotact Funct Neurosurg, 68(1-4 Pt 1):117-20, 1997. Keyword(s): Angiography Digital Subtraction, methods, Carotid Arteries, anatomy & histology, Cerebral Angiography, methods, Human, Image Enhancement, Magnetic Resonance Angiography, methods, Radiology Interventional, methods, Stereotaxic Techniques. [Abstract] [bibtex-entry]



136. N Ayache. Analyzing 3D images of the brain. NeuroImage, 4(3 Pt 2), December 1996. Keyword(s): Brain Mapping, Computer Graphics, Human, Image Processing Computer-Assisted, Robotics, Software, User-Computer Interface. [bibtex-entry]



137. E. Bardinet, L.D. Cohen, and N. Ayache. Tracking and motion analysis of the left ventricle with deformable superquadrics. Medical Image Analysis, 1(2), 1996. Note: Also INRIA Research Report RR-2797, INRIA Sophia-Antipolis, February 1996. [bibtex-entry]



138. S Cotin, H Delingette, M Bro-Nielsen, N Ayache, J M Clement, V Tassetti, and J Marescaux. Geometric and physical representations for a simulator of hepatic surgery. Stud Health Technol Inform, 29:139-51, 1996. Keyword(s): Computer Simulation, Education Medical, Human, Image Processing Computer-Assisted, Liver, anatomy & histology, Support Non-U.S. Gov't, User-Computer Interface. [Abstract] [bibtex-entry]



139. J. Feldmar and N. Ayache. Rigid, Affine and Locally Affine Registration of Free-Form Surfaces. International Journal of Computer Vision, 18(2):99-120, May 1996. Keyword(s): matching, registration, deformations. [bibtex-entry]



140. C. Nastar and N. Ayache. Frequency-based Non-rigid Motion Analysis: Application to Four Dimensional Medical Images. IEEE Transactions on Pattern Analysis and Machine Intelligence, 18(11):1067-1079, novembre 1996. [bibtex-entry]



141. G. Subsol, J.-Ph. Thirion, and N. Ayache. Construction automatique d'atlas anatomiques morphométriques à partir d'images médicales tridimensionnelles : application à un atlas du crâne. Traitement du signal, 13(6):651-674, 1996. [bibtex-entry]



142. N. Ayache. Medical Computer Vision, Virtual Reality and Robotics. Image and Vision Computing, 13(4):295-313, May 1995. [bibtex-entry]



143. N. Ayache, P. Cinquin, I. Cohen, L. D. Cohen, I. L. Herlin, F. Leitner, and O. Monga. Segmentation of Complex 3D medical Objects: a challenge and a requirement for computer assisted surgery planning and performing. In Computer Integrated Surgery. MIT-Press, 1995. HAL ID: inria-00532673. [bibtex-entry]



144. A. Guéziec and N. Ayache. Smoothing and Matching of 3-D Space Curves. International Journal of Computer Vision, 12(1):79-104, January 1994. [bibtex-entry]



145. G. Malandain, G. Bertrand, and N. Ayache. Topological segmentation of discrete surfaces. International Journal of Computer Vision, 10(2):183-197, 1993. [bibtex-entry]



146. N. Ayache. Computer Vision Applied to 3D Medical Images: Results, Trends and Future Challenges. In T. Kanade and R. Paul, editors, 6th Int. Symposium on Robotics Research. MIT-Press, 1993. Note: Available as INRIA Research Report 2050. [bibtex-entry]



147. Chahab Nastar and Nicholas Ayache. A New Physically Based Model for Efficient Tracking and Analysis of Deformations. In Geometric Reasoning - from Perception to Action, Lecture notes in computer science. Springer, 1993. [bibtex-entry]



148. I. Cohen, L.D. Cohen, and N. Ayache. Using deformable surfaces to segment 3-D images and infer differential structures. Computer Vision, Graphics, and Image Processing: Image Understanding, 56(2):242-263, 1992. [bibtex-entry]



149. A. Guéziec and N. Ayache. Lissage et reconnaissance de courbes gauches bruitées. Traitement du signal, 9(6), 1992. [bibtex-entry]



150. I.L. Herlin and N. Ayache. Extraction de traits caractéristiques dans des séquences d'images échocardiographiques. Technique et Science Informatiques, 11(4), 1992. [bibtex-entry]



151. Isabelle L. Herlin and Nicholas Ayache. Feature Extraction and analysis methods for sequences of ultrasound images. Image and Vision Computing, 10(10):673-682, 1992. [bibtex-entry]



152. O. Monga, N. Ayache, and P. Sander. Using uncertainty to link edge detection and local surface modelling. Image and Vision Computing, 10(6):673-682, Août 1992. [bibtex-entry]



153. Olivier Monga, Peter Sander, and Nicholas Ayache. From Voxel to Intrinsic Surface Features. Image and Vision Computing, 10(6):403-417, 1992. [bibtex-entry]



154. N. Ayache, I. Cohen, and I.L. Herlin. Medical Image Tracking. In Active Vision, Andrew Blake and Alan Yuille, chapter 17. MIT Press, 1992. Note: In press. [bibtex-entry]



155. Nicholas Ayache and Francis Lustman. Trinocular Stereovision for Robotics. IEEE Transactions on Pattern Analysis and Machine Intelligence, 13(1), 1991. [bibtex-entry]



156. Nicholas Ayache and Olivier Faugeras. Maintaining Representations of the Environment of a Mobile Robot. International Journal of Robotics and Automation, 5(6):804-819, 1989. [bibtex-entry]



157. Nicholas Ayache and Olivier Faugeras. Building, registrating and fusing noisy visual maps. International Journal of Robotics Research, 7(6):45-65, 1988. [bibtex-entry]



158. Nicholas Ayache and Bernard Faverjon. Efficient Registration of stereo images by matching graph descriptions of edge segments. International Journal of Computer Vision, pp 107-131, 1987. [bibtex-entry]



159. Nicholas Ayache and Olivier Faugeras. HYPER: a new approach for the recognition and positioning of 2D objects. IEEE Transactions on Pattern Analysis and Machine Intelligence, 8(1):44-54, 1986. [bibtex-entry]

Conference articles

1. Barbara André, Tom Vercauteren, and Nicholas Ayache. Content-Based Retrieval in Endomicroscopy: Toward an Efficient Smart Atlas for Clinical Diagnosis. In Proceedings of the MICCAI Workshop - Medical Content-based Retrieval for Clinical Decision (MCBR-CDS'11), LNCS, 2011. Springer. [bibtex-entry]



2. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. Retrieval evaluation and distance learning from perceived similarity between endomicroscopy videos. In Proceedings of Medical Image Computing and Computer Assisted Intervention (MICCAI), LNCS, pages 8p, 2011. Springer, Heidelberg. HAL ID: inria-00598301. [bibtex-entry]



3. H. Cochet, A. S. Jadidi, F. Sacher, N. Derval, M. Sermesant, J. Relan, S. J. Kim, P. Bordachar, P. Ritter, M. Hocini, M. Montaudon, F. Laurent, N. Ayache, M. Haïssaguerre, and P. Jais. Ventricular Scar At Cardiac CT Correlates To Critical Isthmuses Of Ventricular Tachycardia Circuits And Sites Of Slow Conduction During Sinus Rhythm - Evidence For Clinical Use Of CT Integration Into 3D Mapping Systems. In Heart Rhythm Society '11, May 2011. HAL ID: inria-00616206. [bibtex-entry]



4. A. S. Jadidi, H. Cochet, F. Sacher, S. J. Kim, M. Sermesant, J. Relan, N. Derval, S. Miyazaki, A. Shah, D. Scherr, S. B. Wilton, P. Pascale, L. Roten, M. Pederson, S. Knecht, P. Bordachar, P. Ritter, M. Hocini, M. Montaudon, F. Laurent, N. Ayache, M. Haïssaguerre, and P. Jais. Ventricular Scar imaging at MRI Correlates to Critical Isthmuses of Ventricular Tachycardia Circuits and Sites of Slow Conduction during Sinus Rhythm - Utility of integrating MR-data into 3D Mapping Systems. In Heart Rhythm Society '11, May 2011. [bibtex-entry]



5. Herve Lombaert, Jean-Marc Peyrat, Pierre Croisille, Stanislas Rapacchi, Laurent Fanton, Patrick Clarysse, Hervé Delingette, and Nicholas Ayache. Statistical Analysis of the Human Cardiac Fiber Architecture from DT-MRI. In Leon Axel and Dimitris Metaxas, editors, Proceedings of FIMH Conference 2011, volume 6666 of LNCS, pages 171-179, May 2011. Springer. Note: Best Paper Award. HAL ID: inria-00616208. [bibtex-entry]



6. Herve Lombaert, Jean-Marc Peyrat, Laurent Fanton, Farida Cheriet, Hervé Delingette, Nicholas Ayache, Patrick Clarysse, Isabelle Magnin, and Pierre Croisille. Statistical Atlas of Human Cardiac Fibers: Comparison with Abnormal Hearts. In Proceedings of STACOM Workshop at MICCAI 2011, September 2011. Springer. HAL ID: inria-00616208. [bibtex-entry]



7. Herve Lombaert, Jean-Marc Peyrat, Laurent Fanton, Farida Cheriet, Hervé Delingette, Nicholas Ayache, Patrick Clarysse, Isabelle Magnin, and Pierre Croisille. Variability of the Human Cardiac Laminar Structure. In Proceedings of STACOM Workshop at MICCAI 2011, September 2011. Springer. HAL ID: inria-00616208. [bibtex-entry]



8. Herve Lombaert, Jean-Marc Peyrat, Stanislas Rapacchi, Laurent Fanton, Herve Delingette, Nicholas Ayache, and Pierre Croisille. Human Statistical Atlas of Cardiac Fiber Architecture from DT-MRI. In Proceedings of Intl. Soc. Mag. Reson. Med. (ISMRM) 2011, volume 19, pages 280, May 2011. HAL ID: inria-00616212. [bibtex-entry]



9. Marco Lorenzi, Nicholas Ayache, Giovanni B. Frisoni, and Xavier Pennec. Mapping the effects of A$\beta$_1-42 levels on the longitudinal changes in healthy aging: hierarchical modeling based on stationary velocity fields. In Proceedings of Medical Image Computing and Computer Assisted Intervention (MICCAI), LNCS, pages 8p, 2011. Springer. HAL ID: inria-00616213. [bibtex-entry]



10. Marco Lorenzi, Nicholas Ayache, and Xavier Pennec. Schilds Ladder for the parallel transport of deformations in time series of images. In G. Szekely and H. Hahn, editors, Proceedings of Information Processing in Medical Imaging (IPMI'11), volume 6801 of LNCS, pages 463-474, 2011. Note: Honorable Mention (runner-up) for the Erbsmann Award. HAL ID: inria-00616210. [bibtex-entry]



11. Jan Margeta, Ezequiel Geremia, Antonio Criminisi, and Nicholas Ayache. Layered Spatio-temporal Forests for Left Ventricle Segmentation from 4D Cardiac MRI Data. In Proceedings of STACOM Workshop at MICCAI 2011, September 2011. Springer. HAL ID: hal-00646674. [bibtex-entry]



12. Bjoern H. Menze, Koen Van Leemput, Antti Honkela, Ender Konukoglu, Marc-Andre Weber, Nicholas Ayache, and Polina Golland. A Generative Approach for Image-Based Modeling of Tumor Growth. In G. Szekely and H. Hahn, editors, Proceedings of Information Processing in Medical Imaging (IPMI'11), LNCS 6801, pages 13p, 2011. HAL ID: inria-00616211. [bibtex-entry]



13. Mihaela Pop, Maxime Sermesant, Jean-Marc Peyrat, Eugene Crystal, Sudip Ghate, Tommaso Mansi, Ilan Lashevsky, Beiping Qiang, Elliot R. McVeigh, Nicholas Ayache, and Graham A. Wright. A 3D MRI-Based Cardiac Computer Model to Study Arrhythmia and Its In-vivo Experimental Validation. In FIMH, pages 195-205, 2011. HAL ID: inria-00616205. [bibtex-entry]



14. Adityo Prakosa, Maxime Sermesant, Hervé Delingette, Eric Saloux, Pascal Allain, Pascal Cathier, Patrick Etyngier, Nicolas Villain, and Nicholas Ayache. Synthetic Echocardiographic Image Sequences for Cardiac Inverse Electro-Kinematic Learning. In Proceedings of Medical Image Computing and Computer Assisted Intervention (MICCAI), LNCS, Toronto, Canada, pages 8p, September 2011. Springer, Heidelberg. HAL ID: inria-00616214. [bibtex-entry]



15. Barbara André, Tom Vercauteren, Anna M. Buchner, Muhammad Waseem Shahid, Michael B. Wallace, and Nicholas Ayache. An image retrieval approach to setup difficulty levels in training systems for endomicroscopy diagnosis. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), number 6362 of Lecture Notes in Computer Science, Beijing, China, pages 480-487, September 2010. Springer. [bibtex-entry]



16. Barbara André, Tom Vercauteren, Michael B. Wallace, Anna M. Buchner, and Nicholas Ayache. Endomicroscopic video retrieval using mosaicing and visual words. In Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), pages 1419-1422, 2010. IEEE. [bibtex-entry]



17. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, and José Braga. Comparison of the endocast growth of chimpanzees and bonobos via temporal regression and spatiotemporal registration. In Miccai Workshop on Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data, Beijing, China, September 2010. [bibtex-entry]



18. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, and José Braga. Measuring the inter-species variability of endocast growth using shape regression and spatiotemporal registration. In Abstracts of the 79-th annual meeting of the American Assoc. of Physical Anthropologists (AAPA), April 2010, Albuquerque, pages 78-79, 2010. [bibtex-entry]



19. Vincent Garcia, Tom Vercauteren, Grégoire Malandain, and Nicholas Ayache. Diffeomorphic demons and the EMPIRE10 challenge. In Grand Challenges in Medical Image Analysis (MICCAI workshop), Beijing, China, September 2010. HAL ID: inria-00616149. [bibtex-entry]



20. Ezequiel Geremia, Bjoern H. Menze, Olivier Clatz, Ender Konukoglu, Antonio Criminisi, and Nicholas Ayache. Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), LNCS, Beijing, China, September 2010. Springer. [bibtex-entry]



21. Marco Lorenzi, Nicholas Ayache, G. Frisoni, and Xavier Pennec. 4D registration of serial brain MR's images: a robust measure of changes applied to Alzheimer's disease. In Miccai Workshop on Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data, Beijing, China, September 2010. Note: Best Oral Presentation award. [bibtex-entry]



22. Tommaso Mansi, Xavier Pennec, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. LogDemons Revisited: Consistent Regularisation and Incompressibility Constraint for Soft Tissue Tracking in Medical Images. In Proc. of Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), part II, volume 6362 of LNCS, Beijing, China, pages 652-659, September 2010. [bibtex-entry]



23. Tommaso Mansi, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Nicholas Ayache, and Younes Boudjemline. Modèles numériques pour la simulation et la prédiction de la fonction cardiaque. In Congrès de la Société Francaise de Pédiatrie et de l'Association des Pédiatres de Langue Française (APLF), 2010. Note: Archives de Pédiatrie 17(6):611-2, PMID: 20654804. [bibtex-entry]



24. Bjoern H. Menze, Koen Van Leemput, Danial Lashkari, Marc-André Weber, Nicholas Ayache, and Polina Golland. A generative model for brain tumor segmentation in multi-modal images. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), LNCS, Beijing, China, September 2010. Springer. [bibtex-entry]



25. Adityo Prakosa, Maxime Sermesant, Hervé Delingette, Eric Saloux, Pascal Allain, Pascal Cathier, Patrick Etyngier, Nicolas Villain, and Nicholas Ayache. Non-Invasive Activation Times Estimation using 3D Echocardiography. In Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function + a Cardiac Electrophysiological Simulation Challenge (STACOM+CESC'10), volume 6364 of LNCS, Beijing, September 2010. Springer. [bibtex-entry]



26. Jatin Relan, Phani Chinchapatnam, Maxime Sermesant, Kawal Rhode, Hervé Delingette, Reza Razavi, and Nicholas Ayache. Coupled Personalisation of Electrophysiology Models for Simulation of Induced Ischemic Ventricular Tachycardia. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'10), LNCS, Beijing, China, September 2010. [bibtex-entry]



27. Jatin Relan, M. Pop, Hervé Delingette, G.A. Wright, Nicholas Ayache, and Maxime Sermesant. Personalisation of a 3D Cardiac Electrophysiology Model for Ventricular Myocardium using Optical Mapping and MRI. In MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM) and a Cardiac Electrophysiological Simulation Challenge (CESC'10), volume 6364 of LNCS, 2010. Springer. [bibtex-entry]



28. Ken C. L. Wong, Florence Billet, Tommaso Mansi, R. Chabiniok, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. Cardiac motion estimation using a proactive deformable model: evaluation and sensitivity analysis. In MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM) and a Cardiac Electrophysiological Simulation Challenge (CESC'10), volume 6364 of LNCS, pages 154-163, 2010. Springer. [bibtex-entry]



29. Barbara André, Tom Vercauteren, Aymeric Perchant, Michael B. Wallace, Anna M. Buchner, and Nicholas Ayache. Endomicroscopic image retrieval and classification using invariant visual features. In Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2009 (ISBI'09), Boston, MA, pages 346-349, August 2009. IEEE. [bibtex-entry]



30. Barbara André, Tom Vercauteren, Aymeric Perchant, Michael B. Wallace, Anna M. Buchner, and Nicholas Ayache. Introducing space and time in local feature-based endomicroscopic image retrieval. In Proceedings of the MICCAI Workshop - Medical Content-based Retrieval for Clinical Decision (MCBR-CDS'09), volume 5853 of Lecture Notes in Computer Science, pages 18-30, February 2009. Springer. [bibtex-entry]



31. Florence Billet, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. Cardiac Motion Recovery and Boundary Conditions Estimation by Coupling an Electromechanical Model and Cine-MRI Data. In Proceedings of Functional Imaging and Modeling of the Heart 2009 (FIMH'09), volume 5528 of LNCS, pages 376-385, 3-5 June 2009. [bibtex-entry]



32. Stanley Durrleman, Pierre Fillard, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. A Statistical Model of White Matter Fiber Bundles based on Currents. In Jerry L. Prince, Dzung L. Pham, and Kyle J. Myers, editors, Proceedings of Information Processing in Medical Imaging (IPMI'09), volume 5636 of LNCS, pages 114-125, 2009. HAL ID: inria-00502721. [bibtex-entry]



33. Stanley Durrleman, Xavier Pennec, Alain Trouvé, Guido Gerig, and Nicholas Ayache. Spatiotemporal Atlas Estimation for Developmental Delay Detection in Longitudinal Datasets. In Guang-Zhong Yang, David Hawkes, Daniel Rueckert, Alison Noble, and Chris Taylor, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'09), Part I, volume 5761 of Lecture Notes in Computer Science, London, UK, pages 297-304, September 2009. Springer. [bibtex-entry]



34. Hans Lamecker, Tommaso Mansi, Jatin Relan, Florence Billet, Maxime Sermesant, Nicholas Ayache, and Hervé Delingette. Adaptive Tetrahedral Meshing for Personalized Cardiac Simulations. In MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling (CI2BM09), London United Kingdom, pages 149-158, 2009. HAL ID: inria-00417371. Keyword(s): elements, modeling, mesh quality, mesh size control. [Abstract] [bibtex-entry]



35. Tommaso Mansi, Stanley Durrleman, Boris Bernhardt, Maxime Sermesant, Hervé Delingette, Ingmar Voigt, Philipp Lurz, Andrew M Taylor, Julie Blanc, Younes Boudjemline, Xavier Pennec, and Nicholas Ayache. A Statistical Model of Right Ventricle in Tetralogy of Fallot for Prediction of Remodelling and Therapy Planning. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'09), volume 5761 of Lecture Notes in Computer Science, London, UK, pages 214-221, September 2009. Springer. [bibtex-entry]



36. Tommaso Mansi, Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Julie Blanc, Younes Boudjemline, and Nicholas Ayache. Physically-Constrained Diffeomorphic Demons for the Estimation of 3D Myocardium Strain from Cine-MRI. In Proceedings of Functional Imaging and Modeling of the Heart 2009 (FIMH'09), volume 5528 of LNCS, pages 201-210, 3-5 June 2009. [bibtex-entry]



37. Mihaela Pop, Maxime Sermesant, Tommaso Mansi, Eugene Crystal, Jay Detsky, Yuesong Yang, Paul Fefer, Elliot McVeigh, Alexander Dick, Nicholas Ayache, and Graham Wright. Characterization of Post-infarct Scars in a Porcine Model - a Combined Experimental and Theoretical Study. In Proceedings of Functional Imaging and Modeling of the Heart 2009 (FIMH'09), volume 5528 of LNCS, pages 1-10, 3-5 June 2009. [bibtex-entry]



38. Jatin Relan, Maxime Sermesant, Hervé Delingette, Mihaela Pop, Graham Wright, and Nicholas Ayache. Quantitative comparison of two cardiac electrophysiology models using personalisation to optical and MR data. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'09), Boston, MA, pages 1027-1030, July 2009. Keyword(s): bioelectric phenomena, biomedical MRI, biomedical optical imaging, cardiology, image resolution, medical image processing, physiological modelsAliev-Panfilov model, MRI, cardiac models, depolarisation, electrophysiology, optical imaging, phenomenological model, porcine healthy heart, repolarisation, spatial resolution, temporal resolution. [bibtex-entry]



39. Jatin Relan, Maxime Sermesant, Mihaela Pop, Hervé Delingette, Michel Sorine, Graham Wright, and Nicholas Ayache. Parameter Estimation of a 3D Cardiac Electrophysiology Model Including the Restitution Curve Using Optical and MR Data. In Olaf Dössel and Wolfgang C. Schlegel, editors, World Congress on Medical Physics and Biomedical Engineering, volume 25/IV of IFMBE Proceedings, Munich, Germany, pages 1716-1719, September 2009. Springer. [bibtex-entry]



40. Jatin Relan, Maxime Sermesant, Mihaela Pop, Hervé Delingette, Michel Sorine, Graham Wright, and Nicholas Ayache. Volumetric Prediction of Cardiac Electrophysiology using a Heart Model Personalised to Surface Data. In MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling - CI2BM09, London, UK, pages 19-27, 2009. HAL ID: inria-00418471. [bibtex-entry]



41. Tammy Riklin-Raviv, Bjoern H. Menze, Koen Van Leemput, Bram Stieltjes, Marc-André Weber, Nicholas Ayache, William M. Wells, and Polina Golland. Joint segmentation via patient-specific latent anatomy model. In MICCAI Workshop on Probabilistic Methods in Medical Image Analysis (PMMIA'09)), London, UK, September 2009. [bibtex-entry]



42. Maxime Sermesant, Florence Billet, Radomir Chabiniok, Tommaso Mansi, Phani Chinchapatnam, Philippe Moireau, Jean-Marc Peyrat, Kawal Rhode, Matt Ginks, Pier Lambiase, Simon Arridge, Hervé Delingette, Michel Sorine, Aldo Rinaldi, Dominique Chapelle, Reza Razavi, and Nicholas Ayache. Personalised Electromechanical Model of the Heart for the Prediction of the Acute Effects of Cardiac Resynchronisation Therapy. In Proceedings of Functional Imaging and Modeling of the Heart 2009 (FIMH'09), volume 5528 of LNCS, pages 239-248, 3-5 June 2009. [bibtex-entry]



43. Florence Billet, Maxime Sermesant, Hervé Delingette, and Nicholas Ayache. Cardiac Motion Recovery by Coupling an Electromechanical Model and Cine-MRI Data: First Steps. In K. Miller and P.M.F. Nielsen, editors, Proc. of the Workshop on Computational Biomechanics for Medicine III. (Workshop MICCAI-2008), September 2008. [bibtex-entry]



44. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. A Forward Model to Build Unbiased Atlases from Curves and Surfaces. In X. Pennec and S. Joshi, editors, Proc. of the International Workshop on the Mathematical Foundations of Computational Anatomy (MFCA-2008), September 2008. [bibtex-entry]



45. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Sparse Approximation of Currents for Statistics on Curves and Surfaces. In Dimitris Metaxas, Leon Axel, Gábor Székely, and Gabor Fichtinger, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), Part II, volume 5242 of LNCS, New-York, USA, pages 390-398, September 2008. Springer. HAL ID: inria-00286014. [bibtex-entry]



46. Heike Hufnagel, Xavier Pennec, Jan Ehrhardt, Nicholas Ayache, and Heinz Handels. A Global Criterion for the Computation of Statistical Shape Model Parameters Based on Correspondence Probabilities. In Springer, editor, Bildverarbeitung für die Medizin 2008, volume 14 of Informatik aktuell, pages 277-282, 2008. [bibtex-entry]



47. H. Hufnagel, X. Pennec, J. Ehrhardt, N. Ayache, and H. Handels. Comparison of Statistical Shape Models Built on Correspondence Probabilities and One-to-One Correspondences. In Proc. SPIE Symposium on Medical Imaging '08, volume 6914 of SPIE Conference Series, San Diego, USA, February 2008. [bibtex-entry]



48. Ender Konukoglu, W.M. Wells, S. Novellas, Nicholas Ayache, R. Kikinis, P.M. Black, and K.M. Pohl. Monitoring Slowly Evolving Tumors. In In Proceedings of the IEEE Internation Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 2008. [bibtex-entry]



49. Damien Lepiller, Maxime Sermesant, Mihaela Pop, Hervé Delingette, Graham A. Wright, and Nicholas Ayache. Cardiac Electrophysiology Model Adjustment Using the Fusion of MR and Optical Imaging. In Dimitris N. Metaxas, Leon Axel, Gabor Fichtinger, and Gábor Székely, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), volume 5241 of Lecture Notes in Computer Science, pages 678-685, 2008. Springer. [bibtex-entry]



50. Jean-Marc Peyrat, Hervé Delingette, Maxime Sermesant, Xavier Pennec, Chenyang Xu, and Nicholas Ayache. Registration of 4D Time-Series of Cardiac Images with Multichannel Diffeomorphic Demons. In Dimitris Metaxas, Leon Axel, Gabor Fichtinger, and Gábor Székely, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), volume 5242 of Lecture Notes in Computer Science, New York, USA, pages 972-979, September 2008. Springer. [bibtex-entry]



51. Jean-Christophe Souplet, Christine Lebrun, Nicholas Ayache, and Grégoire Malandain. A New Evaluation Of The Brain Parenchymal Fraction: Application In Multiple Sclerosis Longitudinal Studies. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, pages 65-68, May 2008. IEEE. [bibtex-entry]



52. Jean-Christophe Souplet, Christine Lebrun, Nicholas Ayache, and Grégoire Malandain. An Automatic Segmentation of T2-FLAIR Multiple Sclerosis Lesions. In MICCAI-Multiple Sclerosis Lesion Segmentation Challenge Workshop, New York, NY, USA, September 2008. [bibtex-entry]



53. N. Toussaint, T. Mansi, H. Delingette, Nicholas Ayache, and M. Sermesant. An Integrated Platform for Dynamic Cardiac Simulation and Image Processing: Application to Personalised Tetralogy of Fallot Simulation. In Proc. Eurographics Workshop on Visual Computing for Biomedicine (VCBM), Delft, The Netherlands, 2008. Keyword(s): Cardiac Simulation, Freeware, Dynamics, Visualization, VTK. [bibtex-entry]



54. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Symmetric Log-Domain Diffeomorphic Registration: A Demons-based Approach. In Dimitris Metaxas, Leon Axel, Gabor Fichtinger, and Gábor Székely, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), Part I, volume 5241 of Lecture Notes in Computer Science, New York, USA, pages 754-761, September 2008. Springer. HAL ID: inria-00280602. [bibtex-entry]



55. Boon Thye Thomas Yeo, Mert Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl, and Polina Golland. Spherical Demons: Fast Surface Registration. In Dimitris Metaxas, Leon Axel, Gabor Fichtinger, and Gábor Székely, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), volume 5241 of Lecture Notes in Computer Science, New York, USA, pages 745-753, September 2008. Springer. Note: Source code found here. HAL ID: inria-00287048. [bibtex-entry]



56. Boon Thye Thomas Yeo, Tom Vercauteren, Pierre Fillard, Xavier Pennec, Polina Golland, Nicholas Ayache, and Olivier Clatz. DTI Registration with Exact Finite-Strain Differential. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 2008. IEEE. HAL ID: inria-00272326. [bibtex-entry]



57. Jimena Costa, Hervé Delingette, and Nicholas Ayache. Automatic Segmentation of the Bladder Using Deformable Models. In Proceedings of IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07), Metro Washington DC, USA, pages 904-907, 2007. [bibtex-entry]



58. Jimena Costa, Hervé Delingette, Sébastien Novellas, and Nicholas Ayache. Automatic Segmentation of Bladder and Prostate Using Coupled 3D Deformable Models. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), volume 4791 of LNCS, Brisbane, Australia, pages 252-260, October 2007. Springer. [bibtex-entry]



59. H. Delingette, M. Sermesant, J.-M. Peyrat, N. Ayache, K. Rhode, R. Razavi, E. McVeigh, D. Chapelle, J. Sainte-Marie, P. Moireau, M. Fernandez, J.-F. Gerbeau, K. Djabella, Q. Zhang, and M. Sorine. CardioSense3D: Patient-Specific Cardiac Simulation. In Proceedings of IEEE International Conference on Biomedical Imaging: From Nano to Macro (ISBI'07), Metro Washington DC, USA, pages 628-631, 12-15 April 2007. [bibtex-entry]



60. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Measuring Brain Variability via Sulcal Lines Registration: a Diffeomorphic Approach. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 4791 of LNCS, Brisbane, Australia, pages 675-682, October 2007. Springer. HAL ID: inria-00502704. [bibtex-entry]



61. P. Fillard, X. Pennec, P.M. Thompson, and N. Ayache. Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines. In Proc. of MICCAI'07 Workshop on Statistical Registration: Pair-wise and Group-wise Alignment and Atlas Formation, Brisbane, Australia, 2007. [bibtex-entry]



62. Heike Hufnagel, Xavier Pennec, Jan Ehrhardt, Heinz Handels, and Nicholas Ayache. Point-Based Statistical Shape Models with Probabilistic Correspondences and Affine EM-ICP. In Springer, editor, Bildverarbeitung fuer die Medizin 2007, Informatik aktuell, pages 434-438, March 2007. Springer. Note: Third prize in category best scientific work. Keyword(s): statistical shape models, registration, EM-ICP, probabilistic correspondences. [bibtex-entry]



63. H. Hufnagel, X. Pennec, J. Ehrhardt, H. Handels, and N. Ayache. Shape Analysis Using a Point-Based Statistical Shape Model Built on Correspondence Probabilities. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), volume 4791 of LNCS, Brisbane, Australia, pages 959-967, October 2007. Springer. [bibtex-entry]



64. E. Konukoglu, O. Clatz, Pierre-Yves Bondiau, Maxime Sermesant, H. Delingette, and N. Ayache. Towards an Identification of Tumor Growth Parameters from Time Series of Images. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI), volume 4791 of LNCS, Brisbane, Australia, pages 549-556, October 2007. Springer. [bibtex-entry]



65. E. Konukoglu, M. Sermesant, O. Clatz, J.-M. Peyrat, H. Delingette, and N. Ayache. A Recursive Anisotropic Fast Marching Approach to Reaction Diffusion Equation: Application to Tumor Growth Modeling. In Proceedings of the 20th International Conference on Information Processing in Medical Imaging (IPMI'07), volume 4584 of LNCS, pages 686-699, 2-6 July 2007. [bibtex-entry]



66. Stephane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. Clinical Evaluation of a Respiratory Gated Guidance System for Liver Punctures. In Nicholas Ayache, Sébastien Ourselin, and Anthony J. Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), volume 4792 of Lecture Notes in Computer Science, Brisbane, Australia, pages 77-85, October 2007. Springer. [bibtex-entry]



67. Aymeric Perchant, Tom Vercauteren, Fabien Oberrietter, Nicolas Savoire, and Nicholas Ayache. Region Tracking Algorithms on Laser Scanning Devices Applied to Cell Traffic Analysis. In Proceedings IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07), Metro Washington DC, USA, pages 260-263, April 2007. HAL ID: inria-00166610. [bibtex-entry]



68. Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, Elliot McVeigh, and Nicholas Ayache. Statistical Comparison of Cardiac Fibre Architectures. In Proceedings of Functional Imaging and Modeling of the Heart 2007 (FIMH'07), volume 4466 of LNCS, pages 413-423, 7-9 June 2007. [bibtex-entry]



69. M. Reyes Aguirre, M.G. Linguraru, K. Marias, N. Ayache, L.-P. Nolte, and M. A. González Ballester. Statistical Shape Analysis via Principal Factor Analysis. In Proceedings of IEEE International Symposium on Biomedical Imaging (ISBI), Metro Washington DC, USA, pages 1216-1219, 2007. [bibtex-entry]



70. M. Sermesant, E. Konukoglu, H. Delingette, Y. Coudiere, P. Chinchaptanam, K.S. Rhode, R. Razavi, and N. Ayache. An anisotropic multi-front fast marching method for real-time simulation of cardiac electrophysiology. In Proceedings of Functional Imaging and Modeling of the Heart 2007 (FIMH'07), volume 4466 of LNCS, pages 160-169, 7-9 June 2007. [bibtex-entry]



71. Tom Vercauteren, Xavier Pennec, Ezio Malis, Aymeric Perchant, and Nicholas Ayache. Insight Into Efficient Image Registration Techniques and the Demons Algorithm. In Proc. Information Processing in Medical Imaging (IPMI'07), volume 4584 of Lecture Notes in Computer Science, Kerkrade, The Netherlands, pages 495-506, July 2007. Springer. HAL ID: inria-00165534. [bibtex-entry]



72. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Diffeomorphic Demons Using ITK's Finite Difference Solver Hierarchy. In Insight Journal -- ISC/NA-MIC Workshop on Open Science at MICCAI 2007, October 2007. Note: Source code available online. [bibtex-entry]



73. Tom Vercauteren, Xavier Pennec, Aymeric Perchant, and Nicholas Ayache. Non-parametric Diffeomorphic Image Registration with the Demons Algorithm. In Nicholas Ayache, Sébastien Ourselin, and Anthony J. Maeder, editors, Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), volume 4792 of Lecture Notes in Computer Science, Brisbane, Australia, pages 319-326, October 2007. Springer. HAL ID: inria-00166123. [bibtex-entry]



74. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. A Log-Euclidean Framework for Statistics on Diffeomorphisms. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, number 4190 of LNCS, pages 924-931, 2-4 October 2006. Keyword(s): Non-rigid registration, Lie groups, Diffeomorphisms, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]



75. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. A Log-Euclidean Polyaffine Framework for Locally Rigid or Affine Registration. In J.P.W. Pluim, B. Likar, and F.A. Gerritsen, editors, Proceedings of the Third International Workshop on Biomedical Image Registration (WBIR'06), volume 4057 of LNCS, Utrecht, The Netherlands, pages 120-127, 9 - 11 July 2006. Springer. Keyword(s): Polyaffine transformations, Diffeomorphisms, Non-rigid registration, Multi-affine registration, Lie groups, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]



76. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. Statistics on Diffeomorphisms in A Log-Euclidean Framework. In X. Pennec and S. Joshi, editors, Proc. of the International Workshop on the Mathematical Foundations of Computational Anatomy (MFCA-2006), pages 16-17, 1st of October 2006. Keyword(s): Non-rigid registration, Lie groups, Diffeomorphisms, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]



77. Nicholas Ayache, Tom Vercauteren, Grégoire Malandain, Fabien Oberrietter, Nicolas Savoire, and Aymeric Perchant. Processing and Mosaicing of Fibered Confocal Images. In MICCAI Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'06), October 2006. Note: Invited. [bibtex-entry]



78. Antoine Azar, Chenyang Xu, Xavier Pennec, and Nicholas Ayache. An interactive Intensity- and Feature-Based Non-Rigid Registration Framework for 3D Medical Images. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 824-827, April 2006. Keyword(s): Spine, variability model, Riemannian geometry. [bibtex-entry]



79. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Nicholas Ayache, and Hubert Labelle. A Novel Framework for the 3D Analysis of Spine Deformation Modes. In Research into Spinal Deformities, volume 123 of Studies in Health Technology and Informatics, pages 176-182, 2006. [bibtex-entry]



80. Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Nicholas Ayache, and Hubert Labelle. Assessment of Brace Local Action on Vertebrae Relative Poses. In Research into Spinal Deformities, volume 123 of Studies in Health Technology and Informatics, pages 372-378, 2006. [bibtex-entry]



81. Jonathan Boisvert, Xavier Pennec, Nicholas Ayache, Hubert Labelle, and Farida Cheriet. 3D Anatomic Variability Assesment of the Scoliotic Spine Using Statistics on Lie Groups. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 750-753, April 2006. IEEE. Keyword(s): Spine, variability model, Riemannian geometry. [bibtex-entry]



82. Jonathan Boisvert, Xavier Pennec, Hubert Labelle, Farida Cheriet, and Nicholas Ayache. Principal Spine Shape Deformation Modes Using Riemannian Geometry and Articulated Models. In Proc of the IV Conference on Articulated Motion and Deformable Objects, Andratx, Mallorca, Spain, 11-14 July, volume 4069 of LNCS, pages 346-355, 2006. Springer. Note: AMDO best paper award 2006. [bibtex-entry]



83. Olivier Commowick, Vincent Arsigny, Jimena Costa, Nicholas Ayache, and Grégoire Malandain. An Efficient Locally Affine Framework for the Registration of Anatomical Structures. In Proceedings of the Third IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 478-481, April 2006. Keyword(s): Non-rigid registration, Multi-affine registration, Magnetic Resonance Imaging, Polyaffine transformations, Log-Euclidean metrics, Diffeomorphisms. [bibtex-entry]



84. Pierre Fillard, Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Clinical DT-MRI estimation, smoothing and fiber tracking with log-Euclidean metrics. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), Crystal Gateway Marriott, Arlington, Virginia, USA, pages 786-789, April 2006. Keyword(s): DT-MRI, tensor estimation, Riemannian geometry, Log-Euclidean metrics. [bibtex-entry]



85. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating Tumor Invasion Margins for Physiologically Determined Radiotherapy Regions. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, number 4190 of LNCS, pages 338-346, 2-4 October 2006. Keyword(s): Tumor growth modeling, Glioma, brain tumors, radiotherapy, hamilton jacobi, DT-MRI, DTI, Diffusion Tensor, fisher kolmogorov, F-KPP. [bibtex-entry]



86. Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, Elliot McVeigh, and Nicholas Ayache. Towards a Statistical Atlas of Cardiac Fiber Structure. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, volume 4190 of LNCS, pages 297-304, 2-4 October 2006. Springer. Keyword(s): DT-MRI, DTI, Diffusion Tensor, Log-Euclidean, Cardiac Fiber, Heart, Myocardium, Atlas. [bibtex-entry]



87. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Fast and Simple Calculus on Tensors in the Log-Euclidean Framework. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part I, volume 3749 of LNCS, Palm Springs, CA, USA, October 26-29, pages 115-122, 2005. Springer. HAL ID: inria-00502669. Keyword(s): DT-MRI, Magnetic Resonance Imaging, Tensors, brain, Riemannian geometry, Lie group, regularization, interpolation, Log-Euclidean metrics. [bibtex-entry]



88. Eric Bardinet, Didier Dormont, Grégoire Malandain, Manik Bhattacharjee, Bernard Pidoux, Christian Saleh, Philippe Cornu, Nicholas Ayache, Yves Agid, and Jérôme Yelnik. Retrospective cross-evaluation of an histological and deformable 3D atlas of the basal ganglia on series of Parkinsonian patients treated by deep brain stimulation (DBS). In J. Duncan and G. Gerig, editors, Proceedings of MICCAI'05, volume 3750 of LNCS, Palm Springs, California, pages 385-393, 2005. Springer. [bibtex-entry]



89. Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Modélisation macroscopique de la croissance des tumeurs cérébrales. In Congrès Français de Mécanique (CFM), Troyes, August 2005. [bibtex-entry]



90. Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Nicholas Ayache, Ron Kikinis, Ferenc A. Jolesz, and Simon K. Warfield. Hybrid Formulation of the Model-Based Non-Rigid Registration Problem to Improve Accuracy and Robustness. In J. Duncan and G. Gerig, editors, Proceedings of MICCAI'05, volume 3750 of LNCS, pages 295-302, October 2005. Springer. [bibtex-entry]



91. Olivier Commowick, Radu Stefanescu, Pierre Fillard, Vincent Arsigny, Nicholas Ayache, Xavier Pennec, and Grégoire Malandain. Incorporating Statistical Measures of Anatomical Variability in Atlas-to-Subject Registration for Conformal Brain Radiotherapy. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part II, volume 3750 of LNCS, Palm Springs, CA, USA, October 26-29, pages 927-934, 2005. Springer. HAL ID: inria-00502673. Keyword(s): registration, brain, Brain Stem, statistics, validation, Tensors. [Annotation] [bibtex-entry]



92. Pierre Fillard, Vincent Arsigny, Nicholas Ayache, and Xavier Pennec. A Riemannian Framework for the Processing of Tensor-Valued Images. In Ole Fogh Olsen, Luc Florak, and Arjan Kuijper, editors, Deep Structure, Singularities, and Computer Vision (DSSCV), LNCS, pages 112-123, June 2005. Springer. Keyword(s): Tensors, Riemannian geometry, Structure tensors, regularization. [bibtex-entry]



93. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Paul M. Thompson, and Nicholas Ayache. Extrapolation of Sparse Tensor Fields: Application to the Modeling of Brain Variability. In Gary Christensen and Milan Sonka, editors, Proc. of Information Processing in Medical Imaging 2005 (IPMI'05), volume 3565 of LNCS, Glenwood springs, Colorado, USA, pages 27-38, July 2005. Springer. HAL ID: inria-00502688. Keyword(s): Sucal lines, Riemannian geometry, brain, Modeling of anatomical variability, Tensors. [bibtex-entry]



94. M. A. González Ballester, M.G. Linguraru, M. Reyes Aguirre, and N. Ayache. On the Adequacy of Principal Factor Analysis for the Study of Shape Variability. In J.M. Fitzpatrick and J.M. Reinhardt, editors, SPIE Medical Imaging '05, volume 5747, pages 1392-1399, 2005. SPIE Publishing. [bibtex-entry]



95. S. Haïk, D. Galanaud, B.A. Faucheux, N. Privat, I. Laffont-Proust, M.G. Linguraru, N. Ayache, J.J. Hauw, D. Dormont, and J.P. Brandel. Early diagnosis of human TSE by multimodality MRI: Spectroscopic detection of thalamic gliosis in a patient with FFI and normal FLAIR and diffusion-weighted imaging. In Proceedings of Prions 2005: Between Fundamentals and Society's Needs, pages 176, 2005. [bibtex-entry]



96. S. Haïk, D. Galanaud, B.A. Faucheux, N. Privat, M.G. Linguraru, N. Ayache, J.J. Hauw, D. Dormont, and J.P. Brandel. Early diagnosis of human TSE by multimodality MRI: Spectroscopic detection of thalamic gliosis in a patient with FFI and normal FLAIR and diffusion-weighted imaging. In II International Symposium on The New Prion Biology: Basic Science, Diagnosis and Therapy, Venice, Italy, April 2005. [bibtex-entry]



97. Heike Hufnagel, Xavier Pennec, Grégoire Malandain, Hans Handels, and Nicholas Ayache. Non-Linear 2D and 3D Registration Using Block-Matching and B-Splines. In Bildverarbeitung fuer die Medizin 2005, Informatik aktuell, Heidelberg, Germany, pages 325-329, March 2005. Deutsches Krebsforschungszentrum, Springer. [bibtex-entry]



98. M.G. Linguraru, N. Ayache, M.A. González Ballester, E. Bardinet, D. Galanaud, S. Haïk, B.A. Faucheux, P. Cozzone, D. Dormont, and J.P. Brandel. New Ratios for the Detection and Classification of CJD in Multisequence MRI of the Brain. In J. Duncan and G. Gerig, editors, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2005, volume 3750 of LNCS, Palm Springs, USA, pages 492-499, 2005. Springer. HAL ID: hal-00092642. [bibtex-entry]



99. Valérie Moreau-Villéger, Hervé Delingette, Maxime Sermesant, Hiroshi Ashikaga, Owen Faris, Elliot McVeigh, and Nicholas Ayache. Estimating Local Apparent Conductivity with a 2-D Electrophysiological Model of the Heart. In Proc. of Functional Imaging and Modeling of the Heart 2005 (FIMH'O5), volume 3504 of LNCS, pages 256-266, June 2005. Springer. [bibtex-entry]



100. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. A complete Augmented Reality Guidance System for Liver Punctures: First Clinical Evaluation. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part I, volume 3749 of LNCS, Palm Springs, CA, USA, October 26-29, pages 539-547, 2005. Springer. [bibtex-entry]



101. Xavier Pennec, Radu Stefanescu, Vincent Arsigny, Pierre Fillard, and Nicholas Ayache. Riemannian Elasticity: A statistical regularization framework for non-linear registration. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part II, volume 3750 of LNCS, Palm Springs, CA, USA, October 26-29, pages 943-950, 2005. Springer. HAL ID: inria-00502675. Keyword(s): registration, statistics, Tensors, Riemannian geometry, brain. [bibtex-entry]



102. Tom Vercauteren, Aymeric Perchant, Xavier Pennec, and Nicholas Ayache. Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences. In J. Duncan and G. Gerig, editors, Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part I, volume 3749 of LNCS, Palm Springs, CA, USA, October 26-29, pages 753-760, October 2005. Springer. HAL ID: inria-00166791. [bibtex-entry]



103. Christopher Wagner, Olivier Clatz, Ross Feller, Douglas Perrin, Hervé Delingette, Nicholas Ayache, and Robert Howe. Integrating Tactile and Force Feedback with Finite Element Models. In International Conference on Robotics and Automation (ICRA'05), Barcelona, April 2005. [bibtex-entry]



104. Olivier Clatz, Pierre Yves Bondiau, Hervé Delingette, Grégoire Malandain, Maxime Sermesant, Simon Warfield, and Nicholas Ayache. In Silico Tumor Growth: Application to Glioblastomas. In C. Barillot, D.R. Haynor, and P. Hellier, editors, Proc. of the 7th Int. Conf on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004 (2), volume 3217 of LNCS, Saint-Malo, France, pages 337-345, September 2004. Springer. [bibtex-entry]



105. Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra Golby, Nicholas Ayache, Ron Kikinis, Ferenc Jolesz, and Simon Warfield. Robust Nonrigid Registration to Capture Brain Shift from Intraoperative MRI. In 5th Interventional MRI Symposium, Cambridge, MA. USA, October 2004. [bibtex-entry]



106. Guillaume Dugas-Phocion, Miguel Ángel González Ballester, Christine Lebrun, Stéphane Chanalet, Caroline Bensa, Grégoire Malandain, and Nicholas Ayache. Hierarchical Segmentation of Multiple Sclerosis Lesions in Multi-Sequence MRI. In International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'04), Arlington, VA, USA, April 2004. IEEE. Keyword(s): multiple sclerosis. [bibtex-entry]



107. Guillaume Dugas-Phocion, Miguel Ángel González Ballester, Grégoire Malandain, Christine Lebrun, and Nicholas Ayache. Improved EM-Based Tissue Segmentation and Partial Volume Effect Quantification in Multi-Sequence Brain MRI. In Proc. of MICCAI'04, volume 3216 of Lecture Notes in Computer Science, Saint-Malo, France, pages 26-33, September 2004. Springer. Keyword(s): multiple sclerosis. [bibtex-entry]



108. Guillaume Flandin, Xavier Pennec, Alexis Roche, Will Penny, Nicholas Ayache, and Jean-Baptiste Poline. Multi-subject anatomo-functional classification for activation studies. In NeuroImage (HBM'04), Budapest, Hungary, 2004. [bibtex-entry]



109. Clément Forest, Hervé Delingette, and Nicholas Ayache. Surface Contact and Reaction Force Models for Laparoscopic Simulation. In International Symposium on Medical Simulation, June 2004. [bibtex-entry]



110. D. Galanaud, M.G. Linguraru, S. Haïk, D. Dormont, E. Bardinet, B. Faucheaux, P. Cozzone, N. Ayache, and J.P. Brandel. Intérêt de l'IRM Multimodalitaire dand le Diagnostic des Maladies à Prions. In Congrès du G.I.S. Infections à Prions, pages 26, 2004. [bibtex-entry]



111. Georges Le Goualher, Aymeric Perchant, Magalie Genet, Charlotte Cave, Bertrand Viellerobe, Frederic Berier, Benjamin Abrat, and Nicholas Ayache. Towards Optical Biopsies with an Integrated Fibered Confocal Fluorescence Microscope. In Christian Barillot, David Haynor, and Pierre Hellier, editors, Proc. of MICCAI'04, volume 3217 of LNCS, Saint-Malo, France, pages 761-768, September 2004. Springer. [bibtex-entry]



112. M.G. Linguraru, N. Ayache, E. Bardinet, M.A. González Ballester, D. Galanaud, S. Haïk, B. Faucheaux, J.J. Hauw, J. Chiras, P. Cozzone, D. Dormont, and J.P. Brandel. Détection et Quantification Automatique des Hypersignaux en IRM dans la Maladie de Creutzfeldt-Jakob. In Congrès du G.I.S. Infections à Prions, pages 25, 2004. [bibtex-entry]



113. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. An Accuracy Certified Augmented Reality System for Therapy Guidance. In Proc. of the 8th European Conference on Computer Vision (ECCV 04), Part III, volume 3023 of LNCS, Prague, pages 79-91, May 2004. Springer. Keyword(s): Augmented reality, 3D/2D registration, uncertainty, validation. [bibtex-entry]



114. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. An Augmented Reality System to Guide Liver Punctures. In Workshop AMI-ARCS 2004 held in conjunction with MICCAI'04, pages 77-86, September 2004. IRISA Rennes. [bibtex-entry]



115. Stéphane Nicolau, Jérôme Schmid, Xavier Pennec, Luc Soler, and Nicholas Ayache. An Augmented Reality and Virtuality Interface for a Puncture Guidance System: Design and Validation on an Abdominal Phantom. In Guang-Zhong Yang and Tianzi Jiang, editors, Proc of the Second Int. Workshop on Medical Imaging and Augmented Reality MIAR 2004, volume 3150 of LNCS, Beijing, China, pages 302-310, August 2004. Springer. [bibtex-entry]



116. Nicolas Savoire, Georges Le Goualher, Aymeric Perchant, François Lacombe, Grégoire Malandain, and Nicholas Ayache. Measuring Blood Cells Velocity In Microvessels From a Single Image: Application To In Vivo and In Situ Confocal Microscopy. In Proc. ISBI'04, Arlington (USA), pages 456-459, April 2004. Keyword(s): RBC velocity, confocal microscopy. [bibtex-entry]



117. Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, Hervé Delingette, Didier Mutter, and Jacques Marescaux. Virtual Reality, Augmented Reality and Robotics in surgical procedures of the liver. In Th. M. Buzug and T. C. Lueth, editors, Perspectives in Image-guided Surgery. Proceedings of the Scientific Workshop on Medical Robotics, Navigation and Visualization (MRNV) 2004, RheinAhrCampus Remagen, Germany, pages 476-484, March 11-12 2004. World Scientific. [bibtex-entry]



118. Luc Soler, Stéphane Nicolau, Jérôme Schmid, Christophe Koehl, Jacques Marescaux, Xavier Pennec, and Nicholas Ayache. Virtual Reality and Augmented Reality in Digestive Surgery. In Proc. of IEEE International Symposium on Mixed and Augmented Reality (ISMAR'04), pages 278-279, November 2004. [bibtex-entry]



119. Radu Stefanescu, Olivier Commowick, Grégoire Malandain, Pierre-Yves Bondiau, Nicholas Ayache, and Xavier Pennec. Non-Rigid Atlas to Subject Registration with Pathologies for Conformal Brain Radiotherapy. In C. Barillot, D.R. Haynor, and P. Hellier, editors, Proc. of the 7th Int. Conf on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004, volume 3216 of LNCS, Saint-Malo, France, pages 704-711, September 2004. Springer. Keyword(s): registration, non-rigid, conformal radiotherapy, atlas, pathology. [bibtex-entry]



120. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. A Grid Service for the Interactive Use of a Parallel Non-Rigid Registration Algorithm. In Proc. of HealthGrid 2004, Clermont-Ferrand, January 2004. European Commission, DG Information Society. Keyword(s): registration, matching, real time, parallelism. [bibtex-entry]



121. Jonathan Stoeckel, Nicholas Ayache, Grégoire Malandain, Pierre M. Koulibaly, Klaus P. Ebmeier, and Jacques Darcourt. Automatic Classification of SPECT Images of Alzheimer's Disease Patients and Control Subjects. In Christian Barillot, David Haynor, and Pierre Hellier, editors, Proc. of MICCAI'04, volume 3217 of LNCS, Saint-Malo, France, pages 654-662, September 2004. Springer. [bibtex-entry]



122. Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Polyrigid and Polyaffine Transformations: A New Class of Diffeomorphisms for Locally Rigid or Affine Registration. In Randy E. Ellis and Terry M. Peters, editors, Proc. of MICCAI'03, Part II, volume 2879 of LNCS, Montreal, pages 829-837, November 2003. Springer. Note: MICCAI 2003 Best Student Award in Image Processing and Visualization. PMID: 15948656. [bibtex-entry]



123. C. Blondel, G. Malandain, R. Vaillant, and N. Ayache. 4D deformation field of coronary arteries from monoplane rotational X-ray angiography. In Computer Assisted Radiology and Surgery 2003 Proceedings, volume 1256 of ICS, Londres, United Kingdom, June 2003. Elsevier. [bibtex-entry]



124. C. Blondel, G. Malandain, R. Vaillant, F. Devernay, È. Coste-Manière, and N. Ayache. 4D Tomographic Representation of Coronary Arteries From One Rotational X-ray Sequence. In Randy E. Ellis and Terry M. Peters, editors, Medical image computing and computer-assisted intervention (MICCAI 2003), volume 2878 of LNCS, Montreal, Canada, pages 416-423, November 2003. Springer. HAL ID: inria-00262367. [Abstract] [bibtex-entry]



125. C. Blondel, R. Vaillant, G. Malandain, and N. Ayache. 3D tomographic reconstruction of coronary arteries using a precomputed 4D motion field. In Yves Bizais, editor, Proceedings of the VIIth International Conference on Fully 3D Reconstruction In Radiology and Nuclear Medicine, Saint-Malo, France, July 2003. [bibtex-entry]



126. P. Cathier and N. Ayache. New Vector Field Regularization Techniques for Nonrigid Registration. In J.C. Gee, J.B. A. Maintz, and M. W. Vannier, editors, Second International Workshop on Biomedical Image Registration WBIR'03, volume 2717 of Lecture Notes in Computer Science, Philadelphia, PA, USA, pages 1-10, 2003. Springer. Keyword(s): registration, regularization. [bibtex-entry]



127. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Détermination d'un modèle biomécanique du cerveau par l'analyse d'images : application à la maladie de Parkinson. In Congrès Français de Mécanique (CFM), 2003. [bibtex-entry]



128. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Patient Specific Biomechanical Model of the Brain: Application to Parkinson's disease procedure. In N. Ayache and H. Delingette, editors, International Symposium on Surgery Simulation and Soft Tissue Modeling (IS4TM'03), volume 2673 of Lecture Notes in Computer Science, Juan-les-Pins, France, pages 321-331, 2003. INRIA Sophia Antipolis, Springer. [bibtex-entry]



129. J. Dauguet, V. Frouin, Y. Cointepas, D. Hervé, N. Ayache, and P. Hantraye. Robust segmentation of the thalamus using Kohonen algorithm from diffusion tensor image. In Proc of Int. Soc. for Magnetic Resonance in Medicine (ISMRM) 11th Scientific meeting, Toronto, 2003. [bibtex-entry]



130. Guillaume Flandin, Will Penny, Xavier Pennec, Nicholas Ayache, and Jean-Baptiste Poline. A multisubject anatomo-functional parcellation of the brain. In Tomas Paus, Ed Bullmore, and Jonathan D. Cohen, editors, NeuroImage (HBM'03), New York, USA, 2003. Academic Press. Keyword(s): fMRI. [bibtex-entry]



131. Miguel Angel González Ballester, Xavier Pennec, and Nicholas Ayache. Generalized Image Models and Their Application as Statistical Models of Images. In Randy E. Ellis and Terry M. Peters, editors, Proc. of MICCAI'03, volume 2879 of Lecture Notes in Computer Science, Montreal, Canada, pages 150-157, November 2003. Springer. [bibtex-entry]



132. C. Kenwright, E. Bardinet, S.A. Hojjat, G. Malandain, N. Ayache, and A.C.F. Colchester. 2D to 3D Refinement of Post Mortem Optical and MRI Co-Registration. In Randy E. Ellis and Terry M. Peters, editors, Medical image computing and computer-assisted intervention (MICCAI 2003), volume 2879 of LNCS, Montreal, Canada, pages 935-944, November 2003. Springer. [bibtex-entry]



133. M. G. Linguraru, M. A. González Ballester, and N. Ayache. A Multiscale Feature Detector for Morphological Analysis of the Brain. In Randy E. Ellis and Terry M. Peters, editors, Medical Image Computing and Computer-Assisted Intervention'03, volume 2879 of Lecture Notes in Computer Science, Montreal, Canada, pages 738-745, November 2003. Springer. [bibtex-entry]



134. Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, and Nicholas Ayache. Augmented Reality guided radio-frequency tumor ablation. In Proceedings of Augmented and Virtual Reality Workshop (AVIR03), Genève, pages 34-35, 2003. Keyword(s): 3D/2D registration, Augmented reality, validation. [bibtex-entry]



135. Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, and Nicholas Ayache. Guidage de ponctions percutanées à l'aide d'un système de vision basé sur une méthode de recalage 3D/2D. In Actes du colloque Imagerie pour les sciences du vivant et de l'ingénieur (IMVIE03), Strasbourg, 2003. Keyword(s): 3D/2D registration, Augmented reality, validation. [bibtex-entry]



136. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. Evaluation of a New 3D/2D Registration Criterion for Liver Radio-Frequencies Guided by Augmented Reality. In N. Ayache and H. Delingette, editors, International Symposium on Surgery Simulation and Soft Tissue Modeling (IS4TM'03), volume 2673 of Lecture Notes in Computer Science, Juan-les-Pins, France, pages 270-283, 2003. INRIA Sophia Antipolis, Springer. Keyword(s): 3D/2D registration, Augmented reality, validation. [bibtex-entry]



137. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. Vision augmentée de structures anatomiques abdominales recalées par stéréoscopie. In Actes du quatrième colloque francophone. Méthodes et Techniques Optiques pour l'Industrie, volume 1, Belfort, pages 413-418, 2003. [bibtex-entry]



138. A. Pitiot, H. Delingette, N. Ayache, and P. M. Thompson. Expert-Knowledge-Guided Segmentation System for Brain MRI. In Randy E. Ellis and Terry M. Peters, editors, Medical Image Computing and Computer-Assisted Intervention MICCAI'03, volume 2879 of LNCS, Montreal, pages 644-652, November 2003. Springer. [bibtex-entry]



139. Maxime Sermesant, Olivier Clatz, Zhongze Li, Stéphane Lanteri, Hervé Delingette, and Nicholas Ayache. A Parallel Implementation of Non-Rigid Registration Using a Volumetric Biomechanical Model. In J.C. Gee, J.B. A. Maintz, and M. W. Vannier, editors, Second International Workshop on Biomedical Image Registration WBIR'03, volume 2717 of Lecture Notes in Computer Science, Philadelphia, PA, USA, pages 398-407, 2003. Springer. [bibtex-entry]



140. M. Sermesant, O. Faris, F. Evans, E. McVeigh, Yves Coudière, H. Delingette, and N. Ayache. Preliminary validation using in vivo measures of a macroscopic electrical model of the heart. In N. Ayache and H. Delingette, editors, International Symposium on Surgery Simulation and Soft Tissue Modeling (IS4TM'03), volume 2673 of Lecture Notes in Computer Science, Juan-les-Pins, France, pages 230-243, 2003. INRIA Sophia Antipolis, Springer. [bibtex-entry]



141. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Grid Enabled Non-Rigid Registration with a Dense Transformation and A Priori Information. In Randy E. Ellis and Terry M. Peters, editors, Proc. of MICCAI'03, Part II, volume 2879 of LNCS, Montreal, pages 804-811, November 2003. Springer. [bibtex-entry]



142. Radu Stefanescu, Xavier Pennec, and Nicholas Ayache. Parallel non-rigid registration on a cluster of workstations. In Sofie Norager, editor, Proc. of HealthGrid'03, Lyon, January 2003. European Commission, DG Information Society. Keyword(s): registration, matching, real time, parallelism. [bibtex-entry]



143. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Chantal François, Dominique Tandé, Karine Parain, Grégoire Malandain, Nicholas Ayache, Etienne Hirsch, and Yves Agid. Delineation of the basal ganglia in MR images of patients by automatic registration of a multimodal atlas based on histological and MR data. In NeuroImage (HBM'03), New York, USA, 2003. Keyword(s): fMRI. [bibtex-entry]



144. Eric Bardinet, Pascal Cathier, Alexis Roche, Nicholas Ayache, and Didier Dormont. A posteriori validation of pre-operative planning in functional neurosurgery by quantification of brain pneumocephalus. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 323-330, September 2002. Springer. Keyword(s): functional neurosurgery. [bibtex-entry]



145. Eric Bardinet, Sébastien Ourselin, Didier Dormont, Grégoire Malandain, Dominique Tandé, Karine Parain, Nicholas Ayache, and Jérôme Yelnik. Co-registration of histological, optical and MR data of the human brain. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 548-555, September 2002. Springer. Keyword(s): registration, human brain atlas, histology, MRI. [bibtex-entry]



146. Eric Bardinet, Sébastien Ourselin, Grégoire Malandain, Dominique Tandé, Karine Parain, Nicholas Ayache, and Jérôme Yelnik. Three dimensional functional cartography of the human basal ganglia by registration of optical and histological serial sections. In IEEE International Symposium on Biomedical Imaging, Washington, USA, pages 329-332, 2002. Keyword(s): registration, human brain atlas, histology, MRI. [bibtex-entry]



147. Christophe Blondel, Régis Vaillant, Frédéric Devernay, Grégoire Malandain, and Nicholas Ayache. Automatic trinocular 3D reconstruction of coronary artery centerlines from rotational X-ray angiography. In Computer Assisted Radiology and Surgery 2002 Proceedings, Paris, pages 1073-1078, June 2002. Springer. Note: International Symposium on Cardiovascular Imaging - Invasive Coronary and Vascular Imaging. HAL ID: inria-00262383. [bibtex-entry]



148. Didier Dormont, Eric Bardinet, Alexis Roche, Pascal Cachier, François Bonneville, Nicholas Ayache, Philippe Cornu, and Claude Marsault. Study of per-operative pneumocephalus during functional stereotactic procedures using automated registration algorithms of pre and immediate post operative 3D MR acquisitions. In XVIIth Symposium Neuroradiologicum, Paris, August 2002. [bibtex-entry]



149. Guillaume Flandin, Ferath Kherif, Xavier Pennec, Grégoire Malandain, Nicholas Ayache, and Jean-Baptiste Poline. Improved Detection Sensitivity in Functional MRI Data using a Brain Parcelling Technique. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 467-474, September 2002. Springer. Keyword(s): fMRI. [bibtex-entry]



150. Guillaume Flandin, Ferath Kherif, Xavier Pennec, Denis Rivière, Nicholas Ayache, and Jean-Baptiste Poline. A new representation of fMRI data using anatomo-functional constraints. In NeuroImage (HBM'02), Sendai, Japan, 2002. Keyword(s): fMRI. [bibtex-entry]



151. Guillaume Flandin, Ferath Kherif, Xavier Pennec, Denis Rivière, Nicholas Ayache, and Jean-Baptiste Poline. Parcellation of brain images with anatomical and functional constraints for fMRI data analysis. In IEEE International Symposium on Biomedical Imaging, Washington, USA, pages 907-910, 2002. Keyword(s): fMRI. [bibtex-entry]



152. Clément Forest, Hervé Delingette, and Nicholas Ayache. Cutting Simulation of Manifold Volumetric Meshes. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 235-244, September 2002. Springer. [bibtex-entry]



153. Clément Forest, Hervé Delingette, and Nicholas Ayache. Cutting Simulation of Manifold Volumetric Meshes. In Modelling & Simulation for Computer-aided Medicine and Surgery (MS4CMS'02), 2002. [bibtex-entry]



154. Clément Forest, Hervé Delingette, and Nicholas Ayache. Removing Tetrahedra from a Manifold Mesh. In Computer Animation (CA'02), Geneva, Switzerland, pages 225-229, June 2002. IEEE Computer Society. [bibtex-entry]



155. A. Pitiot, A. Toga, N. Ayache, and P. M. Thompson. Texture based MRI segmentation with a two-stage hybrid neural classifier. In World Congress on Computational Intelligence / INNS-IEEE International Joint Conference on Neural Networks WCCI-IJCNN'02, 2002. [bibtex-entry]



156. S. Prima, N. Ayache, A. Janke, S. Francis, D. Arnold, and L. Collins. Statistical Analysis of Longitudinal MRI Data: Application for detection of Disease Activity in MS. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 363-371, September 2002. Springer. [bibtex-entry]



157. M. Sermesant, Y. Coudière, H. Delingette, and N. Ayache. Progress towards an Electro-Mechanical Model of the Heart for Cardiac Image Analysis. In IEEE International Symposium on Biomedical Imaging (ISBI'02), pages 10-14, 2002. Keyword(s): 4D, Heart, segmentation, medical images, motion tracking, electromechanical model. [bibtex-entry]



158. M. Sermesant, Y. Coudière, H. Delingette, N. Ayache, J. Sainte-Marie, D. Chapelle, F. Clément, and M. Sorine. Progress Towards Model-Based Estimation of the Cardiac Electromechanical Activity from ECG Signals and 4D Images. In Marc Thiriet, editor, Modelling and Simulation for Computer-aided Medicine and Surgery (MS4CMS'02), volume 12 of ESAIM: PROC, pages 153-162, 2002. European Series in Applied and Industrial Mathematics. Keyword(s): 4D, Heart, segmentation, medical images, motion tracking, electromechanical model. [bibtex-entry]



159. Maxime Sermesant, Clément Forest, Xavier Pennec, Hervé Delingette, and Nicholas Ayache. Biomechanical Model Construction from Different Modalities: Application to Cardiac Images. In Takeyoshi Dohi and Ron Kikinis, editors, Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), volume 2488 of LNCS, Tokyo, pages 714-721, September 2002. Springer. Keyword(s): 4D, Heart, segmentation, medical images, motion tracking. [bibtex-entry]



160. Jérôme Yelnik, Eric Bardinet, Didier Dormont, Chantal François, Dominique Tandé, Karine Parain, Sébastien Ourselin, Grégoire Malandain, Nicholas Ayache, and Etienne Hirsch. Elaboration of a three-dimensional, functional and registrable atlas of the human basal ganglia. In 3rd Forum of European Neuroscience, Paris, July 2002. The Federation of European Neuroscience Societies (FENS). Keyword(s): registration, human brain atlas, histology, MRI. [bibtex-entry]



161. C. Allouche, S. Makram, N. Ayache, and H. Delingette. A new kinetic modeling scheme for the human left ventricle wall motion with MR-tagging imaging. In T. Katila, I.E. Magnin, P. Clarysse, J. Montagnat, and J. Nenonen, editors, Functional Imaging and Modeling of the Heart (FIMH'01), Helsinki, Finland, volume 2230 of LNCS, pages 61-68, 2001. Springer. [bibtex-entry]



162. C. Allouche, S. Makram, N. Ayache, and H. Delingette. New methods and algorithms for the accurate real-time motion analysis of the left ventricle with MRI-Tagging imaging. In Computer Assisted Radiology and Surgery (CARS), volume 1230, pages 911-916, June 2001. Elsevier. [bibtex-entry]



163. N. Ayache, D. Chapelle, F. Clément, Y. Coudière, H. Delingette, J.A. Désidéri, M. Sermesant, M. Sorine, and J. Urquiza. Towards Model-Based Estimation of the Cardiac Electro-Mechanical Activity from ECG Signals and Ultrasound Images. In T. Katila, I.E. Magnin, P. Clarysse, J. Montagnat, and Nenonen J., editors, Functional Imaging and Modeling of the Heart (FIMH'01), Helsinki, Finland, volume 2230 of LNCS, pages 120-127, 2001. Springer. Keyword(s): 4D, Heart, segmentation, medical images, motion tracking, electromechanical model. [bibtex-entry]



164. Nicholas Ayache, Xavier Pennec, and Pascal Cachier. Fusing 3-D ultrasound and MRI for real-time image-guided neurosurgery. In Medical Physics and Clinical Engineering Conference, 2001. Note: Invited talk, Physica Medica (European journal of Medical Physics) 17(3). Keyword(s): registration, matching, ultrasound, magnetic resonance, multimodal, deformations. [bibtex-entry]



165. E. Bardinet, A.C.F Colchester, A. Roche, Y. Zhu, Y. He, S. Ourselin, B. Nailon, S.A. Hojjat, J. Ironside, S. Al-Sarraj, N. Ayache, and J. Wardlaw. Registration of Reconstructed Post Mortem Optical Data with MR Scans of the Same Patient. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 957-965, October 2001. Keyword(s): registration, matching, histology. [bibtex-entry]



166. Pascal Cachier, Jean-François Mangin, Xavier Pennec, Denis Rivière, Dimitri Papadopoulos-Orfanos, Jean Régis, and Nicholas Ayache. Multisubject Non-Rigid Registration of Brain MRI using Intensity and Geometric Features. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 734-742, October 2001. Keyword(s): registration, matching, multisubject, magnetic resonance, Deformations. [bibtex-entry]



167. H. Delingette, E. Bardinet, D. Rey, J-D. Lemarechal, J. Montagnat, S. Ourselin, A. Roche, D. Dormont, J. Yelnik, and N. Ayache. YAV++: a Software Platform for Medical Image Processing and Visualization. In Workshop on Interactive Medical Image Visualization and Analysis satellite symposia of MICCAI, IMIVA'01, Utrecht, The Netherlands, October 2001. [bibtex-entry]



168. P. Hellier, C. Barillot, I. Corouge, B. Giraud, G. Le Goualher, L. Collins, A. Evans, G. Malandain, and N. Ayache. Retrospective Evaluation of Inter-subject Brain registration. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 258-265, October 2001. Keyword(s): registration, matching. [bibtex-entry]



169. O. Migneco, G. Malandain, P.M. Koulibaly, Ph. Robert, N. Ayache, and J. Darcourt. Evaluation of an automatic classifier for SPECT Alzheimer's disease diagnosis. In European Association of Nuclear Medicine Meeting, Napoli, Italy, 2001. Note: European Journal of Nuclear Medecine 28(8):1056. [bibtex-entry]



170. S. Ourselin, E. Bardinet, D. Dormont, G. Malandain, A. Roche, N. Ayache, D. Tandé, K. Parain, and J. Yelnik. Fusion of histological sections and MR images: towards the construction of an atlas of the human basal ganglia. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 743-751, October 2001. Keyword(s): registration, matching, human brain atlas, histology, MRI. [bibtex-entry]



171. Xavier Pennec, Nicholas Ayache, Alexis Roche, and Pascal Cachier. Non-rigid MR/US registration for tracking brain deformations. In IEEE Computer Society Press, editor, Proc of Int. Workshop on Medical Imaging and Augmented Reality (MIAR 2001), 10-12 June 2001, Shatin, Hong Kong, pages 79-86, June 2001. Keyword(s): registration, matching, motion tracking, multimodal, ultrasound, magnetic resonance, deformations. [bibtex-entry]



172. Xavier Pennec, Pascal Cachier, and Nicholas Ayache. Tracking brain deformations in time sequences of 3D US images. In M.I. Insana and R.M. Leahy, editors, Proc. of IPMI'01, volume 2082 of LNCS, Davis, CA, USA, pages 169-175, June 2001. Springer. Keyword(s): registration, matching, motion tracking, ultrasound, deformations. [bibtex-entry]



173. G. Picinbono, H. Delingette, and N. Ayache. Non-linear and anisotropic elastic soft tissue models for medical simulation. In ICRA2001: IEEE International Conference Robotics and Automation, Seoul Korea, May 2001. Note: Best conference paper award. Keyword(s): simulation, Deformations. [bibtex-entry]



174. S. Prima, N. Ayache, Tom Barrick, and Neil Roberts. Maximum Likelihood Estimation of the Bias Field in MR Brain Images: Investigating Different Modelings of the Imaging Process. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 811-819, October 2001. [bibtex-entry]



175. David Rey, Jonathan Stoeckel, Grégoire Malandain, and Nicholas Ayache. A Spatio-temporal Model-based Statistical Approach to Detect Evolving Multiple Sclerosis Lesions. In IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, MMBIA'01, Kauia, Hawai, USA, December 2001. Keyword(s): multiple sclerosis. [bibtex-entry]



176. D. Rey, J. Stoeckel, G. Malandain, and N. Ayache. Using SPM to Detect Evolving MS Lesions. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 1232-1234, October 2001. Springer. Keyword(s): multiple sclerosis. [bibtex-entry]



177. M. Sermesant, Y. Coudière, H. Delingette, N. Ayache, and J.A. Désidéri. An Electro-Mechanical Model of the Heart for Cardiac Image Analysis. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 224-231, October 2001. Keyword(s): 4D, Heart, segmentation, medical images, motion tracking, electromechanical model. [bibtex-entry]



178. J. Stoeckel, G. Malandain, O. Migneco, P.M. Koulibaly, P. Robert, N. Ayache, and J. Darcourt. Classification of SPECT Images of Normal Subjects versus Images of Alzheimer's Disease Patients. In W.J. Niessen and M.A. Viergever, editors, 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), volume 2208 of LNCS, Utrecht, The Netherlands, pages 666-674, October 2001. [bibtex-entry]



179. J. Stoeckel, J.-B. Poline, G. Malandain, N. Ayache, and J. Darcourt. Smoothness and degrees of freedom restrictions when using SPM 99. In Human Brain Mapping HBM'01, Brighton, UK, June 2001. Note: In NeuroImage 13(6 supplement 1):259. [bibtex-entry]



180. A. C. F. Colchester, S. Ourselin, Y. Zhu, E. Bardinet, Y. He, A. Roche, S. Al-Sarraj, B. Nailon, J. Ironside, and N. Ayache. 3-D Reconstruction of Macroscopic Optical Brain Slice Images. In A.M. DiGioia and S. Delp, editors, Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery (MICCAI 2000), volume 1935 of Lectures Notes in Computer Science, Pittsburgh, Pennsylvanie USA, octobre 11-14 2000. Springer. Keyword(s): registration, matching, histology, MRI. [bibtex-entry]



181. I. Dygai, J. Stoeckel, O. Migneco, Ph. Desvignes, G. Malandain, N. Ayache, M. Chatel, F. Fauchon, M. Frenay, J. Darcourt, and F. Bussière. SPM Analysis Applied to MIBI-SPECT for the Diagnosis of Recurrent Oligodendrogliomas. In European Association of Nuclear Medicine Meeting, Paris, France, August 2000. Note: European Journal of Nuclear Medecine 27(8):1144. [bibtex-entry]



182. O. Migneco, G. Malandain, A. Roche, I. Dygai, F. Bussière, N. Ayache, and J. Darcourt. Absolute calibration of HMPAO SPECT using Xenon-133. In European Association of Nuclear Medicine Meeting, Paris, France, August 2000. Note: European Journal of Nuclear Medecine 27(8):967. [bibtex-entry]



183. S. Ourselin, A. Roche, S. Prima, and N. Ayache. Block Matching: A General Framework to Improve Robustness of Rigid Registration of Medical Images. In A.M. DiGioia and S. Delp, editors, Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery (MICCAI 2000), volume 1935 of Lectures Notes in Computer Science, Pittsburgh, Penn, USA, pages 557-566, octobre 11-14 2000. Springer. Keyword(s): registration, matching, histology, MRI. [bibtex-entry]



184. G. Picinbono, H. Delingette, and N. Ayache. Real-Time Large Displacement Elasticity for Surgery Simulation: Non-Linear Tensor-Mass Model. In Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery: MICCAI 2000, pages 643-652, October 2000. Keyword(s): conference, simulation. [bibtex-entry]



185. G. Picinbono, J.-C. Lombardo, H. Delingette, and N. Ayache. Anisotropic Elasticity and Forces Extrapolation to Improve Realism of Surgery Simulation. In ICRA2000: IEEE International Conference Robotics and Automation, San Francisco USA, pages 596-602, April 2000. Keyword(s): conference, simulation. [bibtex-entry]



186. S. Prima, S. Ourselin, and N. Ayache. Computation of the Mid-Sagittal Plane in 3D Images of the Brain. In D. Vernon, editor, Sixth European Conference on Computer Vision, ECCV'2000, volume 1842-3 of Lecture Notes in Computer Science, Dublin, Irlande, pages 685-701, June/July 2000. Springer. Note: Http://www.inria.fr/rrrt/RR-3841.html. [bibtex-entry]



187. A. Roche, A. Guimond, N. Ayache, and J. Meunier. Multimodal Elastic Matching of Brain Images. In Computer Vision - ECCV 2000, volume 1843 of LNCS, Dublin, Irlande, pages 511-527, June 2000. Springer. [bibtex-entry]



188. A. Roche, X. Pennec, M. Rudolph, D. P. Auer, G. Malandain, S. Ourselin, L. M. Auer, and N. Ayache. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. In A.M. DiGioia and S. Delp, editors, Proc. of the 3rd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'00), volume 1935 of LNCS, Pittsburgh, Pennsylvanie, USA, pages 567-577, October 11-14 2000. Note: Published in IEEE TMI 20(10), oct. 2001, p. 25-31. Keyword(s): registration, matching, multimodal, magnetic resonance, ultrasound, correlation ratio. [bibtex-entry]



189. L. Soler, J.-M. Clément, C. Koehl, H. Delingette, G. Malandain, N. Ayache, O. Dourthe, and J. Marescaux. An Automatic Virtual Patient Reconstruction from CT-Scans for Hepatic Surgical Planning. In Medicine Meets Virtual Reality (MMVR'2000), Studies in Health Technology and Informatic, Los Angeles, January 2000. IOS press. Keyword(s): conference, reconstruction. [bibtex-entry]



190. L. Soler, H. Delingette, G. Malandain, J. Montagnat, N. Ayache, J.-M. Clément, C. Koehl, O. Dourthe, D. Mutter, and J. Marescaux. A Fully Automatic Anatomical, Pathological and Fonctionnal Segmentation from CT-scans for Hepatic Surgery. In Medical Imaging 2000, SPIE proceedings, San Diego, pages 246-255, February 2000. SPIE. Keyword(s): conference, reconstruction. [bibtex-entry]



191. L. Soler, O. Dourthe, G. Malandain, J. Montagnat, H. Delingette, and N. Ayache. A new 3D segmentation of liver neoplasm, portal venous system and parenchymal contours. In European Congress of Radiology, Vienne (Autriche), mars 2000. [bibtex-entry]



192. L. Soler, C. Koehl, H. Delingette, G. Malandain, N. Ayache, D. Mutter, J. Leroy, B. Malassagne, and J. Marescaux. Planification Chirurgicale Hépatique Assistée par Ordinateur. In 11ème Journées de printemps de l'ACHBT, Paris (France), Juin 2000. [bibtex-entry]



193. J. Declerck, N. Ayache, and E.R. McVeigh. Use of a 4D planispheric transformation for the tracking and the analysis of LV motion with tagged MR images. In SPIE Medical Imaging, vol. 3660, San Diego, CA, USA, February 1999. Note: Also research report INRIA RR 3535, Oct. 1998, http://www.inria.fr/rapports/sophia/RR-3535.html. Keyword(s): Tagged MRI, Heart, 4D, Deformations, Splines. [bibtex-entry]



194. H. Delingette, S. Cotin, and N. Ayache. A Hybrid Elastic Model Allowing Real-Time Cutting Deformations and Force Feedback for Surgery Training and Simulation. In N. Thalmann and D. Thalmann, editors, Computer Animation (Computer Animation'99), pages 70-81, May 1999. IEEE Computer Society. Keyword(s): conference, simulation. [bibtex-entry]



195. H. Delingette, S. Cotin, and N. Ayache. Efficient Linear Elastic Models of Soft Tissues for real time surgery simulation. In Medecine Meets Virtual Reality VII, Interactive Technology and the New Paradigm for He althcare, pages 139-151, January 1999. IOS Press. Keyword(s): conference, simulation, Virtual Reality, Simulation, Surgery. [bibtex-entry]



196. Xavier Pennec, Pascal Cachier, and Nicholas Ayache. Understanding the ``Demon's Algorithm'': 3D Non-Rigid registration by Gradient Descent. In C. Taylor and A. Colchester, editors, Proc. of 2nd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'99), volume 1679 of LNCS, Cambridge, UK, pages 597-605, September 1999. Springer. Keyword(s): registration, matching, ultrasound, deformations. [bibtex-entry]



197. D. Rey, G. Subsol, H. Delingette, and N. Ayache. Automatic Detection and Segmentation of Evolving Processes in 3D Medical Images: Application to Multiple Sclerosis. In A. Kuba, M. SM-amal, and A. Todd-Pokropek, editors, Information Processing in Medical Imaging, IPMI'99, LNCS, Visegrád, Hungary, pages 154-167, June 1999. Springer. Keyword(s): conference, reconstruction, multiple sclerosis. [bibtex-entry]



198. D. Rey, G. Subsol, H. Delingette, and N. Ayache. Using Continuum Mechanics Operators for detection and Quantification of Evolving Processes in 3D Medical Images. In EUROMECH'99, Warsaw, Poland, pages 185-188, May 1999. IPPT PAN. Keyword(s): conference, reconstruction, multiple sclerosis. [bibtex-entry]



199. A. Roche, G. Malandain, N. Ayache, and S. Prima. Towards a Better Comprehension of Similarity Measures used in Medical Image Registration. In C. Taylor and A. Colchester, editors, Proc. of 2nd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'99), volume 1679 of LNCS, Cambridge, UK, pages 555-566, September 1999. Springer. [bibtex-entry]



200. L. Soler, J.-M. Clément, C. Koehl, H. Delingette, G. Malandain, N. Ayache, O. Dourthe, D. Mutter, and J. Marescaux. Planification Chirurgicale Hépatique Assistée par Ordinateur. In Journées de la société française de Chirurgie Digestive, Paris, December 1999. [bibtex-entry]



201. Nicholas Ayache. Medical Image Analysis: a challenge for computer vision research. In Int. Conf. on Pattern Recognition, ICPR'98, Brisbane, Australie, pages 1255-1256, August 1998. IEEE. [bibtex-entry]



202. K. Krissian, G. Malandain, N. Ayache, R. Vaillant, and Y. Trousset. Model-Based Multiscale Detection of 3D Vessels. In Proc. of the IEEE Conf. on Computer Vision and Pattern Recognition, CVPR'98, Santa Barbara, pages 722-727, 1998. [bibtex-entry]



203. K. Krissian, G. Malandain, N. Ayache, R. Vaillant, and Y. Trousset. Model-Based Multiscale Detection of 3D Vessels. In B. Vemuri, editor, Proc. of Worshop on Biomedical Image Analysis WBIA'98, Santa Barbara, pages 202-208, 1998. [bibtex-entry]



204. Alexis Roche, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. The Correlation Ratio as a New Similarity Measure for Multimodal Image Registration. In Proc. of First Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'98), volume 1496 of LNCS, Cambridge, USA, pages 1115-1124, October 1998. Springer. HAL ID: cea-00333675. Keyword(s): registration, matching, multimodal, correlation ratio. [bibtex-entry]



205. N. Ayache. Analysis of 3D Brain Images. In International Workshop on Neuro-informatics, Karolinska institute, Suede, September 1997. [bibtex-entry]



206. N. Ayache. Medical Image Analysis and Simulation. In Proceedings of ASIAN'97, Lecture Notes in Computer Science, Katmandou, Népal, December 1997. Springer. [bibtex-entry]



207. N. Ayache, S. Cotin, and H. Delingette. Surgery simulation with visual and haptic feedback. In Proceedings of the Eighth International Symposium of Robotics Research, Hayama, Japan, October 1997. Keyword(s): workshop, simulation. [bibtex-entry]



208. P.-Y. Bondiau, G. Malandain, N. Ayache, C. Zur, P. Chauvel, and P. Gastaud. L'oeil virtuel. In 103ème Congrès de la société française d'ophtalmologie, Paris, France, May 1997. [bibtex-entry]



209. J. Declerck, J. Feldmar, and N. Ayache. Definition of a 4D continuous polar transformation for the tracking and the analysis of LV motion. In Computer Vision, Virtual Reality and Robotics in Medicine II - Medical Robotics and Computer Assisted Surgery III, volume 1205 of Lecture Notes in Computer Science, pages 33-42, March 1997. Keyword(s): Matching, Heart, SPECT, Splines, Atlas. [bibtex-entry]



210. J. Declerck, J. Feldmar, and N. Ayache. Tracking and analysis of left ventricular motion with 4D planispheric transformations. In Medical and Biological Engineering and Computing, volume 35, pages 685, September 1997. Keyword(s): Motion tracking, Heart, 4D. [bibtex-entry]



211. J. Feldmar, G. Malandain, N. Ayache, S. Fernández-Vidal, E. Maurincomme, and Y. Trousset. Matching 3D MR Angiography Data and 2D X-ray Angiograms. In CVRMed-MRCAS'97, volume 1205 of LNCS, Grenoble, France, pages 129-138, March 1997. Springer. [bibtex-entry]



212. K. Krissian, G. Malandain, and N. Ayache. Directional Anisotropic Diffusion Applied to Segmentation of Vessels in 3D Images. In Scale-Space Theory in Computer Vision (Scale-Space'97), volume 1252 of LNCS, Utrecht, The Netherlands, pages 345-348, July 1997. Springer. [bibtex-entry]



213. O. Migneco, M. Benoit, G. Malandain, J.-P. Thirion, Ph. Robert, N. Ayache, F. Bussière, and J. Darcourt. SPECT memory activation thanks to non-rigid coregistration. In European Association of Nuclear Medecine Meeting, Glasgow, Scotland, August 1997. [bibtex-entry]



214. O. Migneco, J. Darcourt, M. Benoit, G. Malandain, J.-P. Thirion, Ph. Robert, R. Vidal, Ph. Desvignes, J. Benoliel, N. Ayache, and F. Bussière. Activation mnésique en TEMP. In 36eme Colloque de médecine nucléaire 1997, Rennes, France, October 1997. [bibtex-entry]



215. O. Migneco, J.-P. Thirion, M. Benoit, G. Malandain, P. Robert, N. Ayache, and J. Darcourt. SPECT memory activation studies thanks to non-rigid automated 3D image registration. In CVRMed-MRCAS'97, volume 1205 of LNCS, Grenoble, France, pages 487-490, March 1997. Springer. [bibtex-entry]



216. J. Montagnat, H. Delingette, N. Ayache, J.M. Clément, C. Roy, Y. Russier, V. Tassetti, and J. Marescaux. Liver Segmentation in Contrast Enhanced Helical CT-Scans. In Proceedings of World Congress on Medical Physics and Biomedical Engineering, Nice, France, 1997. Keyword(s): workshop, reconstruction. [bibtex-entry]



217. L. Soler, G. Malandain, J. Montagnat, H. Delingette, N. Ayache, J.M. Clément, C. Roy, Y. Russier, V. Tassetti, and J. Marescaux. Automatic Segmentation of Portal Vein in CT-Scans of the Liver. In Proceedings of World Congress on Medical Physics and Biomedical Engineering, Nice, France, pages 788, 1997. Keyword(s): workshop, reconstruction. [bibtex-entry]



218. E. Bardinet, L.D. Cohen, and N. Ayache. Tracking medical 3D data with a deformable parametric model. In Robert Cipolla, editor, 4th European Conference on Computer Vision (ECCV'96), volume vol 1, Cambridge, April 1996. [bibtex-entry]



219. S. Cotin, H. Delingette, and N. Ayache. Real Time Volumetric Deformable Models for Surgery Simulation. In Visualization in Biomedical Computing, Proceedings, volume 1131 of Lecture Notes in Computer Science, September 1996. Springer. Keyword(s): conference, simulation. [bibtex-entry]



220. S. Cotin, H. Delingette, J.-M. Clement, V. Tassetti, J. Marescaux, and N. Ayache. Volumetric Deformable Models for Simulation of Laparoscopic Surgery. In Proceedings of the International Symposium on Computer and Communication Systems for Image Guided Diagnosis and Therapy, Computer Assisted Radiology (CAR'96), volume 1124 of International Congress Series, June 1996. Elsevier. Keyword(s): conference, simulation. [bibtex-entry]



221. S. Cotin, H. Delingette, J-M. Clément, V. Tassetti, J. Marescaux, and N. Ayache. Geometric and Physical Representations for a Simulator of Hepatic Surgery. In Medecine Meets Virtual Reality IV, volume 29 of Studies in Health Technology and Informatics, San Diego, USA, pages 139-151, January 1996. IOS Press. Keyword(s): conference, simulation, Virtual Reality, Simulation, Surgery. [bibtex-entry]



222. S. Cotin, H. Delingette, J-M. Clément, V. Tassetti, J. Marescaux, and N. Ayache. Simulation de chirurgie hépatique avec système de retour de forces. In Interface to Real and Virtual Worlds, pages 139-148, May 1996. AJIIMD. Keyword(s): workshop, simulation, Virtual Reality, Simulation, Surgery. [bibtex-entry]



223. J. Feldmar, G. Malandain, J. Declerck, and N. Ayache. Extension of the ICP Algorithm to Non-Rigid Intensity-Based Registration of 3D Volumes. In Mathematical Methods in Biomedical Image Analysis, San Francisco, California, USA, June 21-22 1996. Keyword(s): registration, matching, deformations. [bibtex-entry]



224. S. Gilles, M. Brady, J.-P. Thirion, and N. Ayache. Bias Field Correction and Segmentation of MR Images. In Visualization in Biomedical Computing, VBC'96, Hamburg (D), September 1996. [bibtex-entry]



225. M.L. Goris, J. Declerck, J. Feldmar, N. Ayache, and W. Pace. Quantification of myocardial pefusion studies after a morphological match to a template. In Western Regional Meeting, Society of Nuclear Medicine, July 1996. Keyword(s): Matching, Heart, SPECT, Atlas. [bibtex-entry]



226. O. Migneco, J.-P. Thirion, M. Benoit, G. Malandain, P. Robert, N. Ayache, and J. Darcourt. Une étude TEMP d'activation mnésique réalisée grâce à des recalages d'images 3D. In Actes du congrès sur la Méthodologie en imagerie fonctionnelle cérébrale, Lyon, France, December 1996. [bibtex-entry]



227. Xavier Pennec and Nicholas Ayache. Quelques problèmes posés par la gestion des primitives géométriques en vision par ordinateur. In Journées ORASIS, pages 111-116, May 1996. Keyword(s): geometry, statistics, uncertainty, Riemannian geometry. [bibtex-entry]



228. Xavier Pennec and Nicholas Ayache. Randomness and Geometric Features in Computer Vision. In IEEE Conf. on Computer Vision and Pattern Recognition (CVPR'96), San Francisco, Cal, USA, pages 484-491, June 1996. Note: Published in J. of Math. Imag. and Vision 9(1), July 1998, p. 49-67. Keyword(s): geometry, statistics, registration, uncertainty, Riemannian geometry. [bibtex-entry]



229. G. Subsol, J.-Ph. Thirion, and N. Ayache. A General Scheme for Automatically Building 3D Morphometric Anatomical Atlases: application to a Skull and a Brain Atlas. In 16th L.A.S.R. Workshop Image Fusion And Shape Variability Techniques, Leeds (UK), pages 115-122, July 1996. Keyword(s): registration, matching, atlas. [bibtex-entry]



230. G. Subsol, J.-Ph. Thirion, and N. Ayache. Application of an Automatically Built 3D Morphometric Brain Atlas: Study of Cerebral Ventricle Shape. In K. H. Höhne, editor, VBC'96, Lecture Notes in Computer Science, Hamburg (D), September 1996. Springer. Keyword(s): registration, matching, atlas. [bibtex-entry]



231. G. Subsol, J.-Ph. Thirion, and N. Ayache. Some applications of an automatically built 3D morphometric skull atlas. In H. Lemke, K. Inamura, A. Farman, and F. Vannier, editors, Computer Assisted Radiology, Paris (France), pages 339-344, June 1996. Keyword(s): atlas. [bibtex-entry]



232. G. Subsol, J.-P. Thirion, and N. Ayache. Une méthode générale pour construire automatiquement des atlas anatomiques morphométriques : application à un atlas du crâne. In Actes du 10eme congrès en Reconnaissance des formes et Intelligence Artificielle (RFIA'96), Rennes (France), January 1996. Note: Accepté pour publication.[bibtex-entry]



233. G. Subsol, J.-Ph. Thirion, and N. Ayache. Une méthode générale pour construire automatiquement des atlas anatomiques morphométriques : application à un atlas du crâne. In Reconnaissance des Formes et Intelligence Artificielle, volume 1, Rennes, pages 159-168, January 1996. AFCET/AFIA. Keyword(s): skull, atlas. [bibtex-entry]



234. N. Ayache. Medical Computer Vision, Virtual Reality and Robotics. In Proceedings of the British Machine Vision Conference, Birmingham, September 1995. [bibtex-entry]



235. N. Ayache, J. Feldmar, G. Malandain, E. Maurincomme, C. Picard, and Y. Trousset. Recalage sans cadre stéréotaxique d'images volumiques et projectives en radiologie interventionnelle. In Mini colloque INSERM de radiologie interventionnelle, Paris, June 1995. [bibtex-entry]



236. E. Bardinet, L.D. Cohen, and N. Ayache. Superquadrics and free-form deformations: a global model to fit and track 3D medical data. In Proceedings of the Conference on Computer Vision, Virtual Reality and Robotics in Medecine (CVRMed'95), volume 905 of Lecture Notes in Computer Science, Nice, France, April 1995. Springer. Keyword(s): FFD, Superquadrique, Deformations, motion tracking. [bibtex-entry]



237. E. Bardinet, L.D. Cohen, and N. Ayache. Tracking medical 3D data with a parametric deformable model. In IEEE Symposium on Computer Vision, Coral Gables, Florida, November 1995. [bibtex-entry]



238. F. Betting, J. Feldmar, N. Ayache, and F. Devernay. A new framework for fusing stereo images with volumetric medical images. In Proceedings of the Conference on Computer Vision, Virtual Reality and Robotics in Medecine (CVRMed'95), volume 905 of Lecture Notes in Computer Science, Nice, pages 30-39, April 1995. Springer. [bibtex-entry]



239. S. Cotin, H. Delingette, and N. Ayache. New Perspectives for Realistic Simulations of Hepatic Surgery. In Actes du Congrès Mondial de Télémedecine, Toulouse, France, December 1995. Keyword(s): workshop, simulation. [bibtex-entry]



240. J. Declerck, G. Subsol, J.-P. Thirion, and N. Ayache. Automatic retrieval of anatomical structures in 3D medical images. In N. Ayache, editor, Proceedings of the Conference on Computer Vision, Virtual Reality and Robotics in Medecine (CVRMed'95), volume 905 of Lecture Notes in Computer Science, Nice (France), pages 153-162, April 1995. Springer. [bibtex-entry]



241. J. Feldmar, N. Ayache, and F. Betting. 3D-2D projective registration of free-form curves and surfaces. In IEEE Proceedings of the Fifth International Conference on Computer Vision (ICCV'95), Cambridge, Ma, pages 549-556, June 1995. [bibtex-entry]



242. G. Subsol, J.-P. Thirion, and N. Ayache. A General Scheme for Automatically Building 3D Morphometric Anatomical Atlases: application to a Skull Atlas. In Proceedings of the Conference on Medical Robotics and Computer Assisted Surgery (MRCAS'95), Baltimore, November 1995. Keyword(s): registration, matching, atlas. [bibtex-entry]



243. S. Benayoun, N. Ayache, and I. Cohen. Mouvement de structures 2D déformables : Utilisation de caractéristiques géométriques différentielles. In AFCET'94, 9ème Congrès Reconnaissance des Formes et Intelligence Artificielle, Paris, Janvier 1994. HAL ID: inria-00532674. [bibtex-entry]



244. J. Feldmar and N. Ayache. Locally Affine Registration of Free-Form Surfaces. In Computer Vision and Pattern Recognition (CVPR'94), Seattle, USA, pages 496-501, June 1994. [bibtex-entry]



245. Alexis Gourdon and Nicholas Ayache. Recalage d'une courbe sur une surface en utilisant des propriétés différentielles. In AFCET'94, 9ème Congrès Reconnaissance des Formes et Intelligence Artificielle, Paris, Janvier 1994. [bibtex-entry]



246. Chahab Nastar and Nicholas Ayache. Classification of Non-rigid Motion in 3D Images using Physics-Based Vibration Analysis. In Proceedings of the IEEE Workshop on Biomedical Image Analysis, Seattle, June 1994. [bibtex-entry]



247. Xavier Pennec and Nicholas Ayache. An ${{\cal O}}(n^2)$ Algorithm for 3D Substructure Matching of Proteins. In A. Califano, I. Rigoutsos, and H.J. Wolson, editors, Shape and Pattern Matching in Computational Biology -- Proc. First Int. Workshop, Seattle, Wash, June 20, 1994, pages 25-40, 1994. Plenum Publishing. Note: Published in Bioinformatics 14(6), 1998, p. 516-522. Keyword(s): registration, matching, protein structure. [bibtex-entry]



248. Gérard Subsol, Jean-Philippe Thirion, and Nicholas Ayache. Non-Rigid Registration for Building 3D Anatomical Atlases. In The 12th International Conference on Pattern Recognition, Jerusalem (Israel), October 1994. IAPR. Keyword(s): registration, matching, atlas, deformations. [bibtex-entry]



249. Gérard Subsol, Jean-Philippe Thirion, and Nicholas Ayache. Steps Towards Automatic Building of Anatomical Atlases. In Visualization in Biomedical Computing '94, October 1994. Keyword(s): atlas. [bibtex-entry]



250. N. Ayache, A. Guéziec, and J.-P. Thirion. Accurate and Robust Registration of 3D medical images using crest lines. In 1st Asian Conference on Computer Vision, ACCV'93, November 1993. Note: Osaka, Japon. Keyword(s): registration, matching. [bibtex-entry]



251. N. Ayache, A. Guéziec, J.-P. Thirion, and A. Gourdon. Evaluating 3D Registration of CT-Scan Images Using Crest Lines. In Proceedings of SPIE'93, Mathematical Methods in Medical Imaging II, volume 2035-06, San Diego, California, USA, pages 60-71, July 14-15 1993. Keyword(s): registration, matching. [bibtex-entry]



252. Laurent D. Cohen, Eric Bardinet, and Nicholas Ayache. Reconstruction of Digital Terrain Model with a Lake. In Proceedings of SPIE'93, Geometric Methods in Computer Vision, San Diego, California, USA, July 1993. Note: Available as INRIA Research Report 1824, December 1992. [bibtex-entry]



253. A. Guéziec and N. Ayache. Large Deformable Splines, Crest Lines and Matching. In Proceedings of SPIE'93, Geometric Methods in Computer Vision II, volume 2031-28, San Diego, California, USA, pages 316-327, July 12-13 1993. Keyword(s): registration, matching. [bibtex-entry]



254. A. Guéziec and N. Ayache. New Developments On Geometric Hashing for Matching Curves. In Proceedings of the conference on Computer Vision and Pattern Recognition, New York, USA, June 1993. IEEE. [bibtex-entry]



255. Chahab Nastar and Nicholas Ayache. A Physically Based Analysis of Deformations in 3D Images. In Proceedings of SPIE'93, Geometric Methods in Computer Vision II, San Diego, California, USA, July 1993. [bibtex-entry]



256. Chahab Nastar and Nicholas Ayache. Applications de modèles déformables physiques a l'analyse des images échocardiographiques. In soumis au Symposium Echocardiographie et Analyse d'Images Ventriculaires, Dijon, Mars 1993. [bibtex-entry]



257. Chahab Nastar and Nicholas Ayache. Fast Segmentation, Tracking, and Analysis of Deformable Objects. In Proceedings of the Fourth International Conference on Computer Vision (ICCV'93), Berlin, May 1993. IEEE. [bibtex-entry]



258. Chahab Nastar and Nicholas Ayache. Non-Rigid Motion Analysis in Medical Images: a Physically Based Approach. In Proceedings of the 13th International Conference on Information Processing in Medical Imaging (IPMI'93), Flagstaff, Arizona, USA, June 1993. Keyword(s): registration, matching, deformations, motion tracking. [bibtex-entry]



259. Gérard Subsol, Jean-Philippe Thirion, and Nicholas Ayache. Reconnaissance de modèles génériques à l'aide d'un réseau spatial de lignes actives. Application au traitement d'images médicales. In Quatrièmes Journées ORASIS, Mulhouse, France, pages 174-177, 11--14 Octobre 1993. GDR-PRC Communication Homme-Machine, Pôle Vision. [bibtex-entry]



260. S. Benayoun, O. Monga, A. Guéziec, and N. Ayache. Using Surface Curvatures for 3-D Image Registration. In Proceedings of the Eleventh Conference on Computer Applications in Radiology (S'CAR92), Baltimore, Maryland U.S.A., June 1992. [bibtex-entry]



261. I. Cohen, N. Ayache, and P. Sulger. Tracking Points on Deformable Objects Using Curvature Information. In 2nd European Conference on Computer Vision (ECCV'92), volume 588 of Lecture Notes in Computer Science, Santa Margherita Ligure, Italy, pages 458-466, May 1992. Springer. [bibtex-entry]



262. I. Cohen, L.D. Cohen, and N. Ayache. Using Deformable Surface to Segment 3-D images and Infer Differential Structures. In 2nd European Conference on Computer Vision (ECCV'92), volume 588 of Lecture Notes in Computer Science, Santa Margherita Ligure, Italy, pages 648-652, May 1992. Springer. [bibtex-entry]



263. A. Guéziec and N. Ayache. Smoothing and Matching of 3-D Space Curves. In Proceedings of the Second European Conference on Computer Vision 1992, Santa Margherita Ligure, Italy, May 1992. [bibtex-entry]



264. I.L. Herlin and N. Ayache. Features Extraction and Analysis Methods for Sequences of Ultrasound Images. In 2nd European Conference on Computer Vision (ECCV'92), Santa Margherita Ligure, Italy, Mai 1992. [bibtex-entry]



265. J.-M. Rocchisani, F. Aissani, I. Cohen, J. Bittoun, N. Ayache, and Y. Pouliquen. Visualisation 3-D de la Géométrie du segment Antérieur de l'oeil in vitro à partir d'images RMN haute résolution. In Vème Congrés du Groupe de Recherche sur les Applications du Magnétisme en Médecine, Mai 1992. [bibtex-entry]



266. J.-M. Rocchisani, I. Cohen, F. Aissani, J. Bittoun, N. Ayache, and Y. Pouliquen. 3D Analysis of the Anterior Segment of Human eye in vitro from High Resolution Magnetic Resonance Imaging. In Conference of the IEEE Engineering in Medicine and Biology Society, Paris, October 1992. [bibtex-entry]



267. J.-Ph. Thirion, A. Gourdon, O. Monga, A. Guéziec, and N. Ayache. Automatic Registration of 3D Images Using Surface Curvature. In 14th Ann. Int. Conf. of the IEEE Engineering in Medecine and Biology Society, Paris, October 1992. [bibtex-entry]



268. J.-Ph. Thirion, A. Gourdon, O. Monga, A. Guéziec, and N. Ayache. Fully Automatic Registration of 3D cat-scan images using surface curvature. In IEEE EMBS satellite symposium on 3D Advanced Image Processing in Medecine, Rennes, November 1992. [bibtex-entry]



269. J.-Ph. Thirion, O. Monga, S. Benayoun, A. Guéziec, and N. Ayache. Automatic Registration of 3D Images Using Surface Curvature. In IEEE Int. Symp. on Optical Applied Science and Engineering, San-Diego, July 1992. [bibtex-entry]



270. G. Malandain, G. Bertrand, and N. Ayache. Topological classification in digital space. In A.C.F. Colchester and D.J. Hawkes, editors, XIIth international conference on Information Processing in Medical Imaging (IPMI), volume 511 of LNCS, Wye, Kent, England, pages 300-313, July 1991. Springer. [bibtex-entry]



271. G. Malandain, G. Bertrand, and N. Ayache. Topological segmentation of discrete surfaces. In Proceedings of the conference on Computer Vision and Pattern Recognition, Lahaina, Maui, Hawaii, pages 444-449, June 3--6 1991. IEEE. [bibtex-entry]

Internal reports

1. M. W. Krueger, J. Relan, H. Delingette, M. Sermesant, N. Ayache, G. Seemann, and O. Dössel. Computational Models for AF and VT simulation. Deliverables D6.2.1, European project euHeart, May 2010. [bibtex-entry]



2. Stanley Durrleman, Xavier Pennec, Guido Gerig, Alain Trouvé, and Nicholas Ayache. Spatiotemporal Atlas Estimation for Developmental Delay Detection in Longitudinal Datasets. Research report RR-6952, INRIA, 2009. HAL ID: inria-00408293. [bibtex-entry]



3. Stanley Durrleman, Xavier Pennec, Alain Trouvé, and Nicholas Ayache. Sparse Approximation of Currents for Statistics on Curves and Surfaces. Research report RR-6571, INRIA, June 2008. HAL ID: inria-00286014. [bibtex-entry]



4. Pierre Fillard, Xavier Pennec, Paul M. Thompson, and Nicholas Ayache. Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines. Research report RR-6241, INRIA, 07 2007. HAL ID: inria-00159699. [bibtex-entry]



5. Vincent Arsigny, Olivier Commowick, Xavier Pennec, and Nicholas Ayache. A Fast and Log-Euclidean Polyaffine Framework for Locally Affine Registration. Research report RR-5865, INRIA Sophia-Antipolis, March 2006. HAL ID: inria-00070161. Keyword(s): Polyaffine transformations, Diffeomorphisms, Non-rigid registration, Multi-affine registration, Lie groups, Log-Euclidean metrics, Magnetic Resonance Imaging. [bibtex-entry]



6. Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Bi-invariant Means in Lie Groups. Application to Left-invariant Polyaffine Transformations. Research report RR-5885, INRIA Sophia-Antipolis, April 2006. HAL ID: inria-00071383. Keyword(s): Bi-invariant means, Fréchet means, Statistics, Lie groups, Riemannian geometry, Polyaffine transformations, Diffeomorphisms. [bibtex-entry]



7. Pierre Fillard, Vincent Arsigny, Xavier Pennec, Kiralee M. Hayashi, Paul M. Thompson, and Nicholas Ayache. Measuring Brain Variability by Extrapolating Sparse Tensor Fields Measured on Sulcal Lines. Research report RR-5887, INRIA, April 2006. HAL ID: inria-00071381. [bibtex-entry]



8. Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, Elliot McVeigh, and Nicholas Ayache. Towards a Statistical Atlas of Cardiac Fiber Architecture. Research report RR-5906, INRIA, May 2006. HAL ID: inria-00071359. Keyword(s): DT-MRI, DTI, Diffusion Tensor, Log-Euclidean, Cardiac Fiber, Heart, Myocardium, Atlas. [bibtex-entry]



9. Vincent Arsigny, Pierre Fillard, Xavier Pennec, and Nicholas Ayache. Fast and Simple Computations on Tensors with Log-Euclidean Metrics. Research report RR-5584, INRIA, Sophia-Antipolis, France, May 2005. HAL ID: inria-00070423. Keyword(s): DT-MRI, Magnetic Resonance Imaging, Tensors, brain, Riemannian geometry, Lie group, regularization, extrapolation, interpolation. [bibtex-entry]



10. Pierre Fillard, Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. Joint Estimation and Smoothing of Clinical DT-MRI with a Log-Euclidean Metric. Research report RR-5607, INRIA, Sophia-Antipolis, France, June 2005. HAL ID: inria-00070400. Keyword(s): tensors, DT-MRI, DTI, estimation, regularization, fiber tracking, Log-Euclidean, Riemannian geometry. [bibtex-entry]



11. Christophe Blondel, Grégoire Malandain, Régis Vaillant, and Nicholas Ayache. Reconstruction of Coronary Arteries from One Rotational X-Ray Projection Sequence. Research report RR-5214, INRIA, May 2004. HAL ID: inria-00077050. Keyword(s): Coronary angiography, Stereovision, Motion Analysis, Tomography. [bibtex-entry]



12. Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, Maxime Sermesant, Simon Warfield, Grégoire Malandain, and Nicholas Ayache. Brain Tumor Growth Simulation. Research report RR-5187, INRIA, 2004. HAL ID: inria-00071401. Keyword(s): tumor, model, glioblastoma, brain, Magnetic Resonance Imaging, growth, model, simulation, finite element, biomechanics, diffusion, infiltration, mass effect, Clinical Target Volume, Gross Tumor Volume. [bibtex-entry]



13. M.G. Linguraru, M. A. González Ballester, E. Bardinet, D. Galanaud, D. Dormont, J.-P. Brandel, and N. Ayache. Automated Analysis of Basal Ganglia Intensity Distribution in Multisequence MRI of the Brain - Application to Creutzfeldt-Jakob Disease. Research Report RR-5276, INRIA, 2004. HAL ID: inria-00070723. [bibtex-entry]



14. V. Moreau-Villéger, H. Delingette, M. Sermesant, O. Faris, E. McVeigh, and N. Ayache. Global and Local Parameter Estimation of a Model of the Electrical Activity of the Heart. Research Report RR-5269, INRIA, July 2004. HAL ID: inria-00070729. Keyword(s): heart modeling, electrophysiology, inverse problem, data assimilation, parameter estimation, FitzHugh-Nagumo. [bibtex-entry]



15. Xavier Pennec, Pierre Fillard, and Nicholas Ayache. A Riemannian Framework for Tensor Computing. Research report RR-5255, INRIA, July 2004. Note: Published in International Journal of Computer Vision 65(1), October 2005.HAL ID: inria-00070743. Keyword(s): Tensors, regularization, PDE, geometry, Riemannian geometry. [bibtex-entry]



16. M. Sermesant, H. Delingette, and N. Ayache. An Electromechanical Model of the Myocardium for Cardiac Image Analysis and Medical Simulation. Research Report RR-5395, INRIA, November 2004. Note: Submitted to the IEEE Trans. in Medical Imaging. HAL ID: inria-00070608. Keyword(s): Heart, simulation, physiology, biomechanics. [bibtex-entry]



17. Vincent Arsigny, Xavier Pennec, and Nicholas Ayache. A novel family of geometrical transformations: Polyrigid transformations. Application to the registration of histological slices. Research report RR-4837, INRIA, 2003. HAL ID: inria-00071748. Keyword(s): registration, matching, histology. [bibtex-entry]



18. Stéphane Nicolau, Xavier Pennec, Luc Soler, and Nicholas Ayache. Validation of a New 3D/2D Registration Criterion including Error Prediction. Application to Image Guided Radio-Frequency Ablation of the Liver Tumors. Research report RR-4993, INRIA, 2003. HAL ID: inria-00071585. Keyword(s): Augmented Reality, 3D/2D Registration, Uncertainty Prediction, Tumors Liver Radio-frequencies Ablation. [bibtex-entry]



19. P. Cachier and N. Ayache. Regularization in Image Non-Rigid Registration: I. Trade-Off between Smoothness and Similarity. Research report RR-4188, INRIA, 2001. HAL ID: inria-00072434. Keyword(s): Deformations, registration, matching. [bibtex-entry]



20. P. Cachier and N. Ayache. Regularization in Image Non-Rigid Registration: II. Isotropic Energies, Filters, and Splines. Research report RR-4243, INRIA, 2001. HAL ID: inria-00072344. Keyword(s): Deformations, registration, matching. [bibtex-entry]



21. Sébastien Ourselin, Xavier Pennec, Radu Stefanescu, Grégoire Malandain, and Nicholas Ayache. Robust Registration of Multi-Modal Medical Images: Towards Real-Time Clinical Applications. Research report RR-4333, INRIA, 2001. Keyword(s): registration, matching, real time, parallelism, magnetic resonance. [bibtex-entry]



22. J. Montagnat, H. Delingette, N. Scapel, and N. Ayache. Representation, Shape, Topology and Evolution of Deformable Surfaces. Application to 3D Medical Image Segmentation. Research report RR-3954, INRIA, 2000. HAL ID: inria-00072695. Keyword(s): tech-report, reconstruction. [bibtex-entry]



23. Xavier Pennec, Pascal Cachier, and Nicholas Ayache. Tracking Brain Deformations in Time-Sequences of 3D US Images. Research report RR-4091, INRIA, December 2000. HAL ID: inria-00072541. Keyword(s): registration, matching, motion tracking, ultrasound, deformations. [bibtex-entry]



24. G. Picinbono, H. Delingette, and N. Ayache. Improving Realism of a Surgery Simulator : Linear Anisotropic Elasticity, Complex Interactions and Force Extrapolation. Research report RR-4018, INRIA, 2000. HAL ID: inria-00072623. Keyword(s): tech-report, simulation. [bibtex-entry]



25. G. Picinbono, H. Delingette, and N. Ayache. Non-Linear Anisotropic Elasticity for Real-Time Surgery Simulation Real-time elastic deformations of soft tissues for surgery simulation. Research report RR-4028, INRIA, 2000. HAL ID: inria-00072611. Keyword(s): tech-report, simulation. [bibtex-entry]



26. S. Prima and N. Ayache. Investigating Different Modelings of the Imaging Process for Maximum Likelihood Estimation of the Bias Field in MR Images. Technical report, INRIA, 2000. [bibtex-entry]



27. Alexis Roche, Xavier Pennec, Grégoire Malandain, Nicholas Ayache, and Sébastien Ourselin. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. Research report RR-3980, INRIA, July 2000. Note: Published in IEEE TMI 20(10), oct. 2001, p. 25-31. HAL ID: inria-00072667. Keyword(s): registration, matching, multimodal, magnetic resonance, ultrasound, correlation ratio. [bibtex-entry]



28. Pascal Cachier, Xavier Pennec, and Nicholas Ayache. Fast Non-Rigid Matching by Gradient Descent: Study and Improvements of the Demons Algorithm. Research report RR-3706, INRIA, June 1999. HAL ID: inria-00072962. Keyword(s): registration, matching, deformations. [bibtex-entry]



29. Alexandre Guimond, Alexis Roche, Nicholas Ayache, and Jean Meunier. Multimodal Brain Warping Using the Demons Algorithm and Adaptative Intensity Corrections. Research report RR-3796, INRIA, 1999. HAL ID: inria-00072863. Keyword(s): registration, matching, deformations, multimodal. [bibtex-entry]



30. K. Krissian, G. Malandain, N. Ayache, R. Vaillant, and Y. Trousset. Model Based Detection of Tubular Structures in 3D Images. Research report RR-3736, INRIA, July 1999. HAL ID: inria-00072929. Keyword(s): vessels, multiscale analysis, centerline detection. [bibtex-entry]



31. S. Prima, S. Ourselin, and N. Ayache. Computation of symmetry planes in 3D medical images. Research report RR-3841, INRIA, December 1999. [bibtex-entry]



32. A. Roche, G. Malandain, and N. Ayache. Unifying Maximum Likelihood Approaches in Medical Image Registration. Research report RR-3741, INRIA, July 1999. HAL ID: inria-00072923. [bibtex-entry]



33. Marie-Laure Tabary, Nicholas Ayache, Jacques Darcourt, and Grégoire Malandain. Analyse statistique d'images médicales : étude et utilisation du logiciel SPM. Research report RR-3802, INRIA, November 1999. HAL ID: inria-00072857. [bibtex-entry]



34. S. Cotin, H. Delingette, and N. Ayache. Efficient Linear Elastic Models of Soft Tissues for real-time surgery simulation. Research report RR-3510, INRIA, 1998. HAL ID: inria-00073174. Keyword(s): tech-report, reconstruction. [bibtex-entry]



35. S. Cotin, H. Delingette, and N. Ayache. Real-time elastic deformations of soft tissues for surgery simulation. Research report RR-3511, INRIA, 1998. HAL ID: inria-00073173. Keyword(s): tech-report, simulation. [bibtex-entry]



36. J. Declerck, N. Ayache, and E.R. McVeigh. Use of a 4D planispheric transformation for the tracking and the analysis of LV motion with tagged MR images. Research report RR-3535, INRIA, October 1998. HAL ID: inria-00073150. [bibtex-entry]



37. K. Krissian, G. Malandain, and N. Ayache. Model Based Multiscale Detection and Reconstruction of 3D Vessels. Research report RR-3442, INRIA, March 1998. HAL ID: inria-00073248. [bibtex-entry]



38. D. Rey, G. Subsol, H. Delingette, and N. Ayache. Automatic detection and segmentation of evolving processes in 3D medical images: application to multiple sclerosis. Research report RR-3559, INRIA, November 1998. HAL ID: inria-00073125. Keyword(s): tech-report, reconstruction, segmentation, automatic detection, evolving processes, vector field analysis, multiple sclerosis. [bibtex-entry]



39. Alexis Roche, Grégoire Malandain, Xavier Pennec, and Nicholas Ayache. Multimodal Image Registration by Maximization of the Correlation Ratio. Research report RR-3378, INRIA, August 1998. Note: Published in MICCAI'98, Cambridge, USA, LNCS 1496, p. 1115-1124. HAL ID: inria-00073311. Keyword(s): registration, matching, multimodal, correlation ratio. [bibtex-entry]



40. E. Bardinet, L.D. Cohen, and N. Ayache. Analyzing the deformation of the left ventricle of the heart with a parametric deformable model. Research report RR-2797, INRIA, Sophia-Antipolis, February 1996. HAL ID: inria-00073893. [bibtex-entry]



41. J. Declerck, J. Feldmar, and N. Ayache. Definition of a 4D continuous polar transformation for the tracking and the analysis of LV motion. Research report RR-3039, Inria, November 1996. HAL ID: inria-00073654. Keyword(s): Matching, Heart, SPECT, Splines, Atlas. [bibtex-entry]



42. K. Krissian, G. Malandain, and N. Ayache. Directional Anisotropic Diffusion applied to segmentation of vessels in 3D images. Research report RR-3064, Inria Sophia Antipolis, 2004 route des Lucioles BP 93 06902 Sophia Antipolis Cedex (France), December 1996. HAL ID: inria-00073628. [bibtex-entry]



43. Xavier Pennec and Nicholas Ayache. Randomness and Geometric Features in Computer Vision. Research report RR-2820, INRIA, March 1996. Note: Published in J. of Math. Imag. and Vision 9(1), July 1998, p. 49-67. Keyword(s): geometry, statistics, uncertainty, Riemannian geometry. [bibtex-entry]



44. E. Bardinet, L.D. Cohen, and N. Ayache. A parametric deformable model to fit unstructured 3D data. Research report RR-2617, INRIA, July 1995. HAL ID: inria-00074068. [bibtex-entry]



45. J. Declerck, G. Subsol, J.-P. Thirion, and N. Ayache. Automatic Retrieval of Anatomical Structures in 3D Medical Images. Research report RR-2485, INRIA, February 1995. HAL ID: inria-00074190. [bibtex-entry]



46. G. Subsol, J.-P. Thirion, and N. Ayache. A General Scheme for Automatically Building 3D Morphometric Anatomical Atlases: application to a Skull Atlas. Research report RR-2586, INRIA, March 1995. HAL ID: inria-00074098. Keyword(s): registration, matching, atlas. [bibtex-entry]



47. J. Feldmar, N. Ayache, and F. Betting. 3D-2D projective registration of free-form curves and surfaces. Research report RR-2434, INRIA, December 1994. HAL ID: inria-00074241. [bibtex-entry]



48. Xavier Pennec and Nicholas Ayache. An ${{\cal O}}(n^2)$ Algorithm for 3D Substructure Matching of Proteins. Research report RR-2274, INRIA, May 1994. Note: Published in Bioinformatics 14(6), 1998, p. 516-522. HAL ID: inria-00074397. Keyword(s): registration, matching, protein structure. [bibtex-entry]



49. Laurent D. Cohen, Eric Bardinet, and Nicholas Ayache. Surface Reconstruction using Active Contour Models. Research report RR-1824, INRIA, February 1993. HAL ID: hal-00166971. [bibtex-entry]



50. Alexis Gourdon and Nicholas Ayache. Registration of a curve on a surface using differential properties. Research report RR-2145, INRIA, December 1993. HAL ID: inria-00074527. Keyword(s): registration, matching. [bibtex-entry]



51. I. Cohen, N. Ayache, and P. Sulger. Tracking points on deformables objects. Research report RR-1595, INRIA, February 1992. [bibtex-entry]



52. C. Nastar and N. Ayache. Fast Segmentation, Tracking, and Analysis of Deformable Objects. Research report RR-1783, INRIA, October 1992. HAL ID: inria-00077023. [bibtex-entry]



53. Grégoire Malandain, G. Bertrand, and Nicholas Ayache. Segmentation topologique des surfaces discretes. Research report RR-1357, INRIA, décembre 1990. HAL ID: inria-00075202. [bibtex-entry]

Patents, standards

1. Tom Vercauteren, Aymeric Perchant, Nicholas Ayache, Xavier Pennec, and Grégoire Malandain. Robust Mosaicing Method with Correction of Motion Distorsions and Tissue Deformations for In Vivo Fibered Microscopy. US Patent Application 2009/0041314 (file 02.08.2007, published 12.02.2009), August 2007. [bibtex-entry]



2. Vincent Arsigny, Xavier Pennec, Pierre Fillard, and Nicholas Ayache. Device for processing raw images or tensor images. US patent US 2008/0170802 (filed 07.04.2006, published 17.07.2008, July 2006. [bibtex-entry]



3. Vincent Arsigny, Xavier Pennec, Pierre Fillard, and Nicholas Ayache. Dispositif perfectionné de traitement ou de production d'images de tenseurs. French patent filing number 0503483, April 2005. Note: International application number PCT/FR2006/000774 published 12.10.2006. [bibtex-entry]



4. Alexis Roche, Grégoire Malandain, Nicholas Ayache, and Xavier Pennec. Electronic device for automatic registration of images. US patent No US 6,539,127 B1, Mars 25, 2003, March 2003. [bibtex-entry]



5. David Rey, Grégoire Malandain, Nicholas Ayache, and Jonathan Stoeckel. Dispositif de méthode de traitement d'image pour détection de lèsions évolutives. FR0113192,FR0115780, 2001. [bibtex-entry]



6. Alexis Roche, Grégoire Malandain, Nicholas Ayache, and Xavier Pennec. Dispositif électronique de recalage automatique d'images. French patent No FR 98 09649, Bulletin officiel de la propriété intellectuelle no 00/39 du Sept. 09 2000. European extension No 99401881, September 2000. [bibtex-entry]



7. S. Cotin, H. Delingette, and N. Ayache. Dispositif électronique de traitement de données-image, pour la simulation du comportement dynamique d'un objet. Brevet français, November 1997. [bibtex-entry]



8. J. Declerck, J. Feldmar, and N. Ayache. Dispositif électronique de traitement d'images pour la détection de mouvements. Brevet français, December 1997. [bibtex-entry]



9. J.-P. Thirion, N. Ayache, O. Monga, and A. Gourdon. Device for processing Three-Dimensional Image Information with Extraction of Significant Lines. US Patent, number 5499322, March 1996. [bibtex-entry]



10. J.-P. Thirion and N. Ayache. Method and device for examining a body, particularly for tomography. U.S. patent number 5 421 330, March 1992. Note: Delivery date: June 6, 1995. [bibtex-entry]



11. J.-Ph. Thirion and N. Ayache. Procédé et dispositif d'aide à l'inspection d'un corps, notamment pour la tomographie. Brevet, demande d'extension internationale, numero 92 00252, Mars 1992. [bibtex-entry]



12. J.-Ph. Thirion, N. Ayache, O. Monga, and A. Gourdon. Dispositif de traitement d'informations d'images tri-dimensionnelles avec extraction de lignes remarquables. Brevet français, numéro 92 03900, Mars 1992. Note: En cours d'examen. [bibtex-entry]



13. J.-Ph. Thirion and N. Ayache. Procédé et dispositif d'aide à l'inspection d'un corps, notamment pour la tomographie. Brevet français, numéro 91 05138, Avril 1991. [bibtex-entry]

Miscellaneous

1. Barbara André, Tom Vercauteren, Anna M. Buchner, Muhammad Waseem Shahid, Michael B. Wallace, and Nicholas Ayache. Toward a structured training system for probe-based Confocal Laser Endomicroscopy (pCLE) on Barrett's Esophagus: a video retrieval approach to estimate diagnosis difficulty. Gastroenterology (DDW 2011), 2011. Note: To appear. [bibtex-entry]



2. Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, and Nicholas Ayache. Endomicroscopic Video Retrieval Approach to Support Diagnostic Differentiation Between Neoplastic and Non-Neoplastic Colonic Polyps. Gastroenterology (DDW 2010), May 2010. [bibtex-entry]



3. Marine Breuilly, Grégoire Malandain, Nicholas Ayache, Philippe Franken, Jacques Darcourt, and Thierry Pourcher. Definition of motionless phases for monitoring gated reconstruction of SPECT images in alive mice. ICVSS 2010, July 2010. [bibtex-entry]



4. Marco Lorenzi, G. Frisoni, Nicholas Ayache, and Xavier Pennec. Mapping longitudinal changes in the brain affected by Alzheimer's disease. First VPH Conference (VPH2010), Brussels), September 2010. [bibtex-entry]



5. Jatin Relan, Maxime Sermesant, Phani Chinchapatnam, Hervé Delingette, Kawal Rhode, Reza Razavi, and Nicholas Ayache. Personalisation of a 3D Macroscopic Cardiac Electrophysiology Model for Simulation of Induced Ischemic Ventricular Tachycardia. First VPH Conference (VPH2010), Brussels), September 2010. [bibtex-entry]



6. Barbara André, Tom Vercauteren, Aymeric Perchant, Michael B. Wallace, Anna M. Buchner, and Nicholas Ayache. Endomicroscopic image retrieval and classification using invariant visual features. Pesented as a poster at the third edition of the International Computer Vision Summer School 2009 (ICVSS'09), July 2009. [bibtex-entry]



7. Tommaso Mansi, Barbara André, Maxime Sermesant, Hervé Delingette, Nicholas Ayache, and Younes Boudjemline. Simulation personnalisée de replacements valvulaires pulmonaires grâce à l'utilisation d'un modèle mathématique du coeur. Archives de Pédiatrie - Congrès des Sociétés Françaises Médico-chirurgicales Pédiatriques, June 2009. [bibtex-entry]



8. Sébastien Novellas, Grégoire Malandain, Jimena Costa, Jean-Christophe Souplet, Nicholas Ayache, and P Chevallier. Apport d'un algorithme de segmentation semi-automatique pour analyse des adénopathies médiastinales. Journées Françaises de Radiologie, October 2008. [bibtex-entry]



9. Jean-Christophe Souplet, Christine Lebrun, Pierre Clavelou, William Camu, Stéphane Chanalet, Nicholas Ayache, and Grégoire Malandain. A Comparative Study of Atrophy Measurements in Multiple Sclerosis. 17th Franco-UK scientific meeting of ARSEP (François Lhermitte Conferences), March 2008. [bibtex-entry]



10. Jean-Christophe Souplet, Christine Lebrun, Pierre Clavelou, William Camu, Stéphane Chanalet, Nicholas Ayache, and Grégoire Malandain. A New Atrophy Measurement Method dedicated to Multiple Sclerosis. 60th American Academy of Neurology Annual Meeting, April 2008. [bibtex-entry]



11. Christine Lebrun, Stéphane Chanalet, Jean-Christophe Souplet, Nicholas Ayache, and Grégoire Malandain. Imaging pre-treatment tools and automatic segmentation of lesion burden. Journées Internationales de la Société Française de Neurologie, June 2007. Keyword(s): multiple sclerosis. [bibtex-entry]



12. Jean-Christophe Souplet, Christine Lebrun, Pierre Clavelou, William Camu, Stéphane Chanalet, Nicholas Ayache, and Grégoire Malandain. A comparative study of skull stripping methods in relapsing-remitting multiple sclerosis: Emergence of a new automatic segmentation algorithm. Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), October 2007. Keyword(s): multiple sclerosis, skull-stripping. [bibtex-entry]



13. Jean-Christophe Souplet, Christine Lebrun, Pierre Fillard, Nicholas Ayache, Pierre Clavelou, and Grégoire Malandain. SepINRIA : un outil d'évaluation de la charge lésionnelle chez des patients atteints de sclérose en plaques. Journées Internationales de la SFN : Sclérose en Plaques (Multiple Sclerosis), June 2007. Note: Abstract in Revue Neurologique (Paris) 2007; 163: 6-7, 725. Keyword(s): multiple sclerosis, SepINRIA, MedINRIA. [bibtex-entry]



14. Tom Vercauteren, Aymeric Perchant, and Nicholas Ayache. In Vivo Microscopy for Real-Time Structural and Functional Cellular Imaging. ERCIM News No.69, April 2007. [bibtex-entry]



15. Nicholas Ayache, Jean-Pierre Boissel, Soren Brunak, Gordon Clapworthy, Guy Lonsdale, Jochen Fingberg, Alejandro Frangi, Gustavo Deco, Peter Hunter, Poul Nielsen, Matt Halstead, Rod Hose, Isabelle Magnin, Fernando Martin-Sanchez, Peter Sloot, Jaap Kaandorp, Alfons Hoekstra, Serge Van Sint Jan, and Marco Viceconti. Towards Virtual Physiological Human: Multilevel Modelling and Simulation of the Human Anatomy and Physiology. Virtual Physiological Human: White paper, EC - DG INFSO and DG JRC, 2006. [bibtex-entry]



16. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating tumor invasion margins for physiologically determined radiotherapy regions. Presented in DIMACS Workshop: Computational Tumor Modeling, 2006. [bibtex-entry]



17. G. Dugas-Phocion, C. Lebrun, S. Chanalet, M. Chatel, N. Ayache, and G. Malandain. Automatic segmentation of white matter lesions in multi-sequence MRI of relapsing-remitting multiple sclerosis patients. 21th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), September 2005. Keyword(s): multiple sclerosis. [bibtex-entry]



18. M.G. Linguraru and N. Ayache. Definition and Evaluation of MRI-Based Measures for the Neuroradiological Investigation of Creutzfeldt-Jakob Diseases. ERCIM News,No.60, Special Issue on Biomedical Informatics, 2005. [bibtex-entry]



19. Mauricio A. Reyes, Gregoire Malandain, Nicholas Ayache, Jacques Darcourt, and Pierre M. Koulibaly. Respiratory Motion Compensation within Emission Tomographic Reconstruction. 52nd Annual Meeting of the Society of Nuclear Medicine, June 2005. [bibtex-entry]



20. PY Bondiau, G Malandain, O Commowick, PY Marcy, S Chanalet, and N Ayache. Atlas-based Automatic Segmentation of MR Images: Validation Study on the Brainstem in Radiotherapy Context. 90th Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA), 2004. [bibtex-entry]



21. Guillaume Dugas-Phocion, Miguel Ángel González Ballester, Christine Lebrun, Stéphane Chanalet, Caroline Bensa, Marcel Chatel, Nicholas Ayache, and Grégoire Malandain. Automatic segmentation of white matter lesions in T2 FLAIR MRI of relapsing-remitting multiple sclerosis patients. 20th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), October 2004. Keyword(s): multiple sclerosis. [bibtex-entry]



22. M.G. Linguraru, D. Galanaud, D. Dormont, B. Faucheaux, S. Haïk, J.J. Hauw, J. Chiras, E. Bardinet, M.A. González Ballester, P. Cozzone, N. Ayache, and J.P. Brandel. Détection et Quantification Automatique des Hypersignaux en IRM dans la Maladie de Creutzfeldt-Jakob. Journées Françaises de Radiologie, 2004. Note: Journal de Radiologie 85(6):1394. [bibtex-entry]



23. C. Lebrun, D. Rey, S. Chanalet, N. Ayache, M. Chatel, and G. Malandain. First validation experiments of a 3-D automatic algorithm based on a vector field analysis to detect and quantify volume variation of multiple sclerosis lesions. 19th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), September 2003. Note: Multiple Sclerosis, P455, pp S112. Keyword(s): multiple sclerosis. [bibtex-entry]



24. C. Lebrun, D. Rey, S. Chanalet, V. Bourg, M. Chatel, N. Ayache, and G. Malandain. Intérêt du recalage automatique des IRM cérébrales dans le suivi et la décision thérapeutique : application à la sclérose en plaques. 10èmes Journées Jean-Denis-Degos Thérapeutique et Neurologie, December 2003. Keyword(s): multiple sclerosis. [bibtex-entry]



25. K. Bénézery, F. Perret, P.-Y. Bondiau, G. Malandain, and N. Ayache. Recalage et Fusion d'images Scanner et IRM du pelvis : utilisation dans le traitement du cancer de la prostate. 12ème Congrès de la Société Française de Radiothérapie Oncologique (SFRO), 22-23 Novembre 2001. [bibtex-entry]



26. C. Lebrun-Frenay, D. Rey, G. Malandain, S. Chanalet, N. Ayache, and M. Chatel. Detection and quantification of MS lesions MRI variations by mathematical differential operators. 16th Congress of the European Committee for Treatment and Research in Multiple Sclerosis, septembre 6-9 2000. Note: Revue Neurologique (Supplement), 156(3S104). Keyword(s): multiple sclerosis. [bibtex-entry]



27. D. Rey, C. Lebrun-Frenay, G. Malandain, S. Chanalet, N. Ayache, and M. Chatel. A New Method to Detect and Quantify Evolving MS Lesions by Mathematical Operators. American Academy of Neurology, 52nd Annual Meeting, May 2000. Note: Neurology (Supplement 3) 54(7):123. Keyword(s): multiple sclerosis. [bibtex-entry]



28. J. Declerck, J. Feldmar, and N. Ayache. Studying the Heart Left Ventricular Motion with 4D Transformations. ERCIM News No.31, October 1997. [bibtex-entry]



29. N. Ayache, E. Bardinet, S. Benayoun, H. Delingette, G. Malandain, S. Fernández-Vidal, L. Soler, J. Montagnat, S. Cotin, G. Subsol, and J.-P. Thirion. Analysis of medical images : Registration, Atlas, Motion. Audiovisual material produced by INRIA audiovisuel, 1996. Keyword(s): video, simulation. [bibtex-entry]



30. F. Schikli, H. Delingette, B. Padovani, C. Maestro, N. Ayache, and J.N. Bruneton. Tomodensimétrie et volumétrie tumorale. Actes des Journées Française de la radiologie (JFR'95), October 1995. Keyword(s): workshop, medical. [bibtex-entry]



31. N. Ayache, E. Bardinet, S. Benayoun, I. Cohen, L.D. Cohen, H. Delingette, J. Feldmar, C. Nastar, G. Subsol, and J.-P. Thirion. Non Rigid Motion (Tracking, Analysis and Simulation). Audiovisual material produced by INRIA audiovisuel, 1994. Keyword(s): video, reconstruction. [bibtex-entry]

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Asclepios was a Greek hero who later became the Greek god of medicine and healing. His most famous sanctuary was located in Epidaurus which is situated in the northeastern Peloponnese (from Ron Leadbetter)