% % % % automatically generated % % /proj/asclepios/home/bin/bibtex2html -w bib-archive/biblio-til-2013.bib bib-archive/post2013_not_in_hal.bib import_13.bib authors_to_be_indexed.cfg html_formatting.cfg same_authors.cfg -use-html-links -icons -force % Date: Tue Dec 5 00:30:09 2023 % Author: epione-publi % % % @BOOK{ayache:hal-03111667, OPTADDRESS = {}, AUTHOR = {Nicholas Ayache and Alain Damasio and Yuval Noah Harari and Cathy O'Neil and Nicolas Revel}, OPTEDITION = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, PUBLISHER = {Flammarion}, SERIES = {Champs Actuel}, TITLE = {Nouvelle enquête sur l'intelligence artificielle}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03111667}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{pennec:hal-02341896, OPTADDRESS = {}, AUTHOR = {Xavier Pennec and Stephan Sommer and Tom Fletcher}, OPTEDITION = {}, EDITOR = {Xavier Pennec and Stefan Sommer and Tom Fletcher}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PUBLISHER = {Academic Press}, OPTSERIES = {}, TITLE = {Riemannian Geometric Statistics in Medical Image Analysis}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1016/C2017-0-01561-6}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02341896}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{zhu:hal-02341877, OPTADDRESS = {}, AUTHOR = {Dajiang Zhu and Jingwen Yan and Heng Huang and Li Shen and Paul M. Thompson and Carl-Fredrik Westin and Xavier Pennec and Sarang Joshi and Mads Nielsen and Tom Fletcher and Stanley Durrleman and Stefan Sommer}, OPTEDITION = {}, EDITOR = {Dajiang Zhu and Jingwen Yan and Mads Nielsen and Tom Fletcher and Stanley Durrleman and Stefan Sommer and Heng Huang and Li Shen and Paul M. Thompson and Carl-Fredrik Westin and Xavier Pennec and Sarang Joshi}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, PUBLISHER = {Springer}, SERIES = {Lecture Notes in Computer Science (LNCS)}, TITLE = {Multimodal Brain Image Analysis and Mathematical Foundations of Computational Anatomy}, VOLUME = {11846}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-33226-6}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Approximation methods, Artificial intelligence, Biomedical imaging, Statistical models, Principal component analysis, Neural networks, Machine learning, Imaging genetics, Image segmentation, Image registration, Image reconstruction, Image processing, Image fusion, Statistics of surfaces, Computational anatomy}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02341877}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{bauer:hal-01923588, OPTADDRESS = {}, AUTHOR = {Martin Bauer and Nicolas Charon and Philipp Harms and Boris Khesin and Alice Le Brigant and Elodie Maignant and Stephen Marsland and Peter Michor and Xavier Pennec and Stephen C. Preston and Stefan Sommer and François-Xavier Vialard}, OPTEDITOR = {}, MONTH = {November}, NOTE = {27 pages, 4 figures}, OPTNUMBER = {}, OPTORGANIZATION = {}, PUBLISHER = {Published by the authors}, OPTSERIES = {}, TITLE = {Math in the Black Forest: Workshop on New Directions in Shape Analysis}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01923588}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{cardoso:hal-01597839, OPTADDRESS = {}, AUTHOR = {Jorge M. Cardoso and Tal Arbel and Enzo Ferrante and Xavier Pennec and Adrian V., Dalca and Sarah Parisot and Sarang Joshi and Nematollah K. Batmanghelich and Aristeidis Sotiras and Mads Nielsen and Mert Sabuncu and Fletcher Tom and Li Shen and Stanley Durrleman and Stefan Sommer}, OPTEDITION = {}, EDITOR = {Jorge Cardoso and Tal Arbel and Mert Sabuncu and Fletcher Tom and Li Shen and Stanley Durrleman and Stefan Sommer and Enzo Ferrante and Xavier Pennec and Dalca Adrian V. and Sarah Parisot and Sarang Joshi and Nematollah Batmanghelich and Aristeidis Sotiras and Mads Nielsen}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, PUBLISHER = {}, SERIES = {Lecture Notes in Computer Science}, TITLE = {Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics}, VOLUME = {10551}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-67675-3}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Data mining, Face recognition, Feature selection, Geometry, Image analysis, Image processing, Image reconstruction, Learning systems, Medical images, Medical imaging, Neural networks, Pattern recognition, Signal processing, Computer vision, Cluster analysis, Clustering algorithms, Artificial intelligence, Bayesian networks, Classification}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01597839}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{pop:hal-01800814, ADDRESS = {France}, AUTHOR = {Mihaela Pop and Maxime Sermesant and Pierre-Marc Jodoin and Alain Lalande and Xiahai Zhuang and Guang Yang and Alistair A Young and Olivier Bernard}, BOOKTITLE = {Statistical Atlases and Computational Models of the Heart. ACDC and MMWHS Challenges}, EDITOR = {Mihaela Pop and Maxime Sermesant and Pierre-Marc Jodoin and Alain Lalande and Xiahai Zhuang and Guang Yang and Alistair Young and Olivier Bernard}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {260}, PUBLISHER = {Springer}, OPTSERIES = {}, TITLE = {Statistical Atlases and Computational Models of the Heart. ACDC and MMWHS Challenges}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01800814}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{ayache:hal-01170613, OPTADDRESS = {}, AUTHOR = {Nicholas Ayache}, OPTEDITION = {}, MONTH = {March}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {80}, PUBLISHER = {Collège de France / Fayard}, SERIES = {Leçons inaugurales du Collège de France}, TITLE = {Des images médicales au patient numérique}, OPTVOLUME = {}, YEAR = {2015}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01170613}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{paragios:inria-00616178, OPTADDRESS = {}, AUTHOR = {Nikos Paragios and Jim Duncan and Nicholas Ayache}, OPTEDITION = {}, EDITOR = { Paragios and Nikos and Duncan and Jim and Ayache and Nicholas}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {590}, PUBLISHER = {Springer}, OPTSERIES = {}, TITLE = {Handbook of Biomedical Imaging: Methodologies and Clinical Research}, OPTVOLUME = {}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1007/978-0-387-09749-7}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/inria-00616178}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{camara:hal-01244233, ADDRESS = {Boston, United States}, AUTHOR = {Oscar Camara and Tommaso Mansi and Mihaela Pop and Kawal Rhode and Maxime Sermesant and Alistair Young}, BOOKTITLE = {Statistical Atlases and Computational Models of the Heart}, EDITOR = {Oscar Camara and Tommaso Mansi and Mihaela Pop and Kawal Rhode and Maxime Sermesant and Alistair Young}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {296}, PUBLISHER = {Springer}, SERIES = {Lecture Notes in Computer Science}, TITLE = {Statistical Atlases and Computational Models of the Heart - Imaging and Modelling Challenges}, VOLUME = {8896}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-14678-2}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01244233}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{durrleman:hal-01114150, ADDRESS = {Cambridge, United States}, AUTHOR = {Stanley Durrleman and Thomas P. Fletcher and Guido Gerig and Marc Niethammer and Xavier Pennec}, BOOKTITLE = {STIA 2014 - Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data}, EDITOR = {Stanley Durrleman and Thomas P. Fletcher and Guido Gerig and Marc Niethammer and Xavier Pennec}, MONTH = {January}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {89}, PUBLISHER = {Springer International Publishing}, SERIES = {Lecture notes in computer science}, TITLE = {Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data}, VOLUME = {8682}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-14905-9}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01114150}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{pennec:hal-01203812, ADDRESS = {Munich, Germany}, AUTHOR = {Xavier Pennec and Sarang Joshi and Mads Nielsen and Thomas P. Fletcher and Stanley Durrleman and Stefan Sommer}, BOOKTITLE = {Mathematical Foundations of Computational Anatomy (MFCA 2015)}, EDITOR = { Pennec and Xavier and Joshi and Sarang and Nielsen and Mads and Fletcher and Thomas P. and Durrleman and Stanley and Sommer and Stefan}, MONTH = {August}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {173}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015)}, OPTVOLUME = {}, YEAR = {2015}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01203812/file/MFCA15_Proceedings.pdf}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01203812}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{menze:hal-00912655, OPTADDRESS = {}, AUTHOR = {Bjoern H. Menze and Georg Langs and Le Lu and Albert Montillo and Zhuowen Tu and Antonio Criminisi}, OPTEDITION = {}, MONTH = {February}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {294}, PUBLISHER = {Springer}, SERIES = {Lecture Notes in Computer Science}, TITLE = {Medical Computer Vision: Recognition techniques and applications in medical imaging. Proceedings of the MICCAI 2012 Workshop on Medical Computer Vision (MCV 2012)}, VOLUME = {7766}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1007/978-3-642-36620-8}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00912655}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{pennec:hal-00873631, OPTADDRESS = {}, AUTHOR = {Xavier Pennec and Sarang Joshi and Mads Nielsen and Thomas P. Fletcher and Stanley Durrleman and Stefan Sommer}, OPTEDITION = {}, EDITOR = { Pennec and Xavier and Joshi and Sarang and Nielsen and Mads and Fletcher and Tom P. and Durrleman and Stanley and Sommer and Stefan}, MONTH = {August}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {132}, PUBLISHER = {Inria}, OPTSERIES = {}, TITLE = {Proceedings of the Fourth International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Biological Shape Variability Modeling (MFCA 2013), Nagoya, Japan}, OPTVOLUME = {}, YEAR = {2013}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00873631/file/MFCA2013_Proceedings.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00873631}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{menze:hal-00912934, ADDRESS = {Nagoya, Japan}, AUTHOR = {Bjoern Menze and Mauricio Reyes and Andras Jakab and Elisabeth Gerstner and Justin Kirby and Keyvan Farahani}, BOOKTITLE = {MICCAI Challenge on Multimodal Brain Tumor Image Segmentation (BRATS)}, EDITOR = {Bjoern Menze and Mauricio Reyes and Andras Jakab and Elisabeth Gerstner and Justin Kirby and Keyvan Farahani}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {57}, PUBLISHER = {MICCAI}, OPTSERIES = {}, TITLE = {Proceedings of the MICCAI Challenge on Multimodal Brain Tumor Image Segmentation (BRATS) 2013}, OPTVOLUME = {}, YEAR = {2013}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00912934/file/proc_brats_2013.pdf}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00912934}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{Pennec:MFCAProcs:11, ADDRESS = {Toronto, Canada}, EDITOR = {Xavier Pennec and Sarang Joshi and Mads Nielsen}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Proceedings of the Third International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability}, OPTVOLUME = {}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/events/MFCA11/Proceedings/MFCA11_Proceedings.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-INVITED-CONFERENCE = {no}, X-PAYS = {US}, X-PROCEEDINGS = {yes}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00813806}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{STACOM:2010, OPTADDRESS = {}, BOOKTITLE = {STACOM/CESC}, EDITOR = {Oscar Camara and M. Pop and Kawal Rhode and Maxime Sermesant and Nic Smith and Alistair A. Young}, OPTMONTH = {}, NOTE = {Held in Conjunction with MICCAI 2010, Beijing, China, September 20, 2010}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {292}, PUBLISHER = {Springer}, SERIES = {LNCS}, TITLE = {Statistical Atlases and Computational Models of the Heart, First International Workshop, STACOM 2010, and Cardiac Electrophysiological Simulation Challenge, CESC 2010}, VOLUME = {6364}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, ISBN = {978-3-642-15834-6}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {yes}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616062}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{miccai-mcv:2010, ADDRESS = {Beijing, China}, EDITOR = {Bjoern H. Menze and Georg Langs and Zhuowen Tu and Antonio Criminisi}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PUBLISHER = {Springer}, SERIES = {LNCS}, TITLE = {Medical Computer Vision: Recognition techniques and applications in medical imaging -- MICCAI-MCV 2010}, VOLUME = {6533}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-INVITED-CONFERENCE = {}, X-PAYS = {US,GB}, X-PROCEEDINGS = {yes}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616061}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{FIMH:2009, ADDRESS = {Nice, France}, EDITOR = {Nicholas Ayache and Hervé Delingette and Maxime Sermesant}, MONTH = {June}, NOTE = {537 pages}, OPTNUMBER = {}, OPTORGANIZATION = {}, PUBLISHER = {Springer}, SERIES = {LNCS}, TITLE = {Functional Imaging and Modeling of the Heart - FIMH 2009}, VOLUME = {5528}, YEAR = {2009}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {yes}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616060}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{Pennec:MFCAProcs:08, ADDRESS = {New York, USA}, EDITOR = {Xavier Pennec and Sarang Joshi}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Proceedings of the Second International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability}, OPTVOLUME = {}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/events/MFCA08/Proceedings/MFCA08_Proceedings.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-INVITED-CONFERENCE = {no}, X-PAYS = {US}, X-PROCEEDINGS = {yes}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00846316}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{miccai:i:2007, ADDRESS = {Brisbane, Australia}, EDITOR = {Nicholas Ayache and Sébastien Ourselin and Anthony Maeder}, MONTH = {October}, NOTE = {1001 pages}, OPTNUMBER = {}, OPTORGANIZATION = {}, PUBLISHER = {Springer}, SERIES = {LNCS}, TITLE = {Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007 - Part I}, VOLUME = {4791}, YEAR = {2007}, OPTABSTRACT = {}, DOI = {10.1007/978-3-540-75757-3}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616018}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{miccai:ii:2007, ADDRESS = {Brisbane, Australia}, EDITOR = {Nicholas Ayache and Sébastien Ourselin and Anthony Maeder}, MONTH = {October}, NOTE = {977 pages}, OPTNUMBER = {}, OPTORGANIZATION = {}, PUBLISHER = {Springer}, SERIES = {LNCS}, TITLE = {Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007 - Part II}, VOLUME = {4792}, YEAR = {2007}, OPTABSTRACT = {}, DOI = {10.1007/978-3-540-75759-7}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616018}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{Delingette:MICCAIworkshop:06, OPTADDRESS = {}, EDITOR = {Hervé Delingette and Alejandro Frangi}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Proceedings of the MICCAI Workshop - From Statistical Atlases to Personalized Models: Understanding Complex Diseases in Populations and Individuals}, OPTVOLUME = {}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00614988}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{Pennec:MFCAProcs:06, ADDRESS = {Copenhagen, Denmark}, EDITOR = {Xavier Pennec and Sarang Joshi}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Proceedings of the First International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability}, OPTVOLUME = {}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/MFCA06.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00813806}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{Ayache:book:2003, OPTADDRESS = {}, OPTEDITION = {}, EDITOR = {N. Ayache}, OPTMONTH = {}, NOTE = {670 pages}, OPTNUMBER = {}, PUBLISHER = {Elsevier}, SERIES = {Handbook of Numerical Analysis (Ph. Ciarlet series editor)}, TITLE = {Computational Models for the Human Body}, OPTVOLUME = {}, YEAR = {2004}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{IS4TM:03, ADDRESS = {Juan-les-Pins, France}, EDITOR = {N. Ayache and H. Delingette}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PUBLISHER = {Springer}, SERIES = {Lecture Notes in Computer Science}, TITLE = {Proceedings of the International Symposium on Surgery Simulation and Soft Tissue Modeling}, VOLUME = {2673}, YEAR = {2003}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{Delingette:Paleo:02, ADDRESS = {Liege, Belgium}, EDITOR = {B. Marfart and H. Delingette and G. Subsol}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PUBLISHER = {BAR International Series 1049}, OPTSERIES = {}, TITLE = {Three Dimensional Imaging in PaleoAnthropology and Prehistoric Archeology}, OPTVOLUME = {}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{Linguraru:Book:01, OPTADDRESS = {}, AUTHOR = {M.G. Linguraru and I. Moisil}, OPTEDITION = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PUBLISHER = {Consoft}, OPTSERIES = {}, TITLE = {Stiinta Sistemelor si a Calculatoarelor}, OPTVOLUME = {}, YEAR = {2001}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{Dugelay:ts:99, OPTADDRESS = {}, EDITOR = {J.L. Dugelay and G. Subsol}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Traitement du Signal - numéro spécial Réalité Virtuelle}, VOLUME = {16(1)}, YEAR = {1999}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{Subsol99.1, ADDRESS = {Laval (France)}, EDITOR = {G. Subsol}, MONTH = {June}, NOTE = {Version électronique : https://www-sop.inria.fr/epidaure/GT-RV/JT-GT-RV7}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {International Scientific Workshop on Virtual Reality and Prototyping}, OPTVOLUME = {}, YEAR = {1999}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{MB3IA98, ADDRESS = {IIT, Mumbai (Inde)}, EDITOR = {E. Cuchet and G. Subsol}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, ORGANIZATION = {IEEE Computer Society}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Model-Based 3D Image Analysis}, OPTVOLUME = {}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{JTGTRV6.98, ADDRESS = {Issy-les-Moulineaux (France)}, EDITOR = {J. L. Dugelay and G. Eude and G. Subsol}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {6èmes Journées de Travail du GT Réalité Virtuelle}, OPTVOLUME = {}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://www.inria.fr/epidaure/GT-RV/gt-rv.html}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{JTGTRV5.96, ADDRESS = {Toulouse (France)}, OPTEDITION = {}, EDITOR = {O. Balet and R. Caubet and J.-P. Jessel and G. Subsol}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, PUBLISHER = {IRIT}, OPTSERIES = {}, TITLE = {Journées Nationales Réalité Virtuelle}, OPTVOLUME = {}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PROCEEDINGS{CVRMed95, ADDRESS = {Nice, France}, EDITOR = {N. Ayache}, MONTH = {April}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PUBLISHER = {Springer}, SERIES = {Lecture Notes in Computer Science}, TITLE = {First international conference on computer vision, virtual reality and robotics in medicine, CVRMed'95}, VOLUME = {905}, YEAR = {1995}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {}, X-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{monhor93, OPTADDRESS = {}, AUTHOR = {O. Monga and R. Horaud}, OPTEDITION = {}, MONTH = {Août}, OPTNOTE = {}, OPTNUMBER = {}, PUBLISHER = {Editions Hermes (Traité des Nouvelles Technologies, série Informatique)}, OPTSERIES = {}, TITLE = {Vision par ordinateur, outils fondamentaux}, OPTVOLUME = {}, YEAR = {1993}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00590049/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{levy92d, OPTADDRESS = {}, AUTHOR = {Lévy Véhel, J.}, OPTEDITION = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PUBLISHER = {SGDN}, OPTSERIES = {}, TITLE = {Etat de l'Art en Géométrie Fractale}, OPTVOLUME = {}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{ayache91, OPTADDRESS = {}, AUTHOR = {N. Ayache}, OPTEDITION = {}, OPTMONTH = {}, NOTE = {342 pages}, OPTNUMBER = {}, PUBLISHER = {MIT-Press}, OPTSERIES = {}, TITLE = {Artificial Vision for Mobile robots - Stereo-vision and Multisensor Perception}, OPTVOLUME = {}, YEAR = {1991}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @BOOK{ayache-book89, OPTADDRESS = {}, AUTHOR = {Nicholas Ayache}, OPTEDITION = {}, OPTMONTH = {}, NOTE = {314 pages, in French}, OPTNUMBER = {}, PUBLISHER = {Inter-Editions (MASSON)}, OPTSERIES = {}, TITLE = {Vision Stéréoscopique et Perception Multisensorielle: Application à la robotique mobile}, OPTVOLUME = {}, YEAR = {1989}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{desrues:tel-04220830, OPTADDRESS = {}, AUTHOR = {Gaëtan Desrues}, MONTH = {March}, OPTNOTE = {}, NUMBER = {2023COAZ4030}, SCHOOL = {Université Côte d'Azur}, TITLE = {Personalised 3D electromechanical models of the heart for cardiac resynchronisation therapy planning in heart failure patients}, TYPE = {Theses}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Patient-specific simulation, Digital twin, ECG, CRT, Cardiac electrophysiology, Biomechanics, Finite element method, Artificial intelligence, Simulation personnalisée, Jumeau numérique, ECG, CRT, Électrophysiologie cardiaque, Biomécanique, Méthode des éléments finis, Intelligence artificielle}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-04220830/file/2023COAZ4030.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-04220830}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{fraboni:tel-04141520, OPTADDRESS = {}, AUTHOR = {Yann Fraboni}, MONTH = {May}, OPTNOTE = {}, NUMBER = {2023COAZ4033}, SCHOOL = {Université Côte d'Azur}, TITLE = {Reliability and robustness of federated learning in practical applications}, TYPE = {Theses}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Federated learning, Heterogeneous data, Privacy, Distributed optimization, Bias, Apprentissage fédéré, Données hétérogènes, Protection des données, Optimisation distribuée, Biais}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-04141520/file/2023COAZ4033.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-04141520}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{hamzaoui:tel-04166332, OPTADDRESS = {}, AUTHOR = {Dimitri Hamzaoui}, MONTH = {June}, OPTNOTE = {}, NUMBER = {2023COAZ4044}, SCHOOL = {Université Côte d'Azur}, TITLE = {AI-based diagnosis of prostate cancer from multiparametric MRI}, TYPE = {Theses}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Machine learning, Prostate-cancer, Inter-expert variability, Segmentation, Consensus, Medical imaging, Artificial intelligence, Apprentissage profond, Prostate-cancer, Variabilité inter-expert, Segmentation, Consensus, Imagerie médicale, Intelligence artificielle}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/tel-04166332v2/file/2023COAZ4044.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/tel-04166332}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{kashtanova:tel-04176798, OPTADDRESS = {}, AUTHOR = {Victoriya Kashtanova}, MONTH = {June}, OPTNOTE = {}, NUMBER = {2023COAZ4043}, SCHOOL = {Université Côte d'Azur}, TITLE = {Learning cardiac electrophysiology dynamics with PDE-based physiological constraints for data-driven personalised predictions}, TYPE = {Theses}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Physics-based learning, Deep learning, Cardiac electrophysiology, Model personalisation, PDE, Simulations, Apprentissage basé sur la physique, Apprentissage profond, Electrophysiologie cardiaque, Personnalisation de modèle, EDP, Simulations}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/tel-04176798v2/file/2023COAZ4043.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/tel-04176798}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{silvarincon:tel-04249209, OPTADDRESS = {}, AUTHOR = {Silva Rincon, Santiago Smith}, MONTH = {July}, OPTNOTE = {}, NUMBER = {2023COAZ4056}, SCHOOL = {Université Côte d'Azur}, TITLE = {Federated learning of biomedical data in multicentric imaging studies}, TYPE = {Theses}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Federated learning, Healthcare, Data protection, GDPR, CCPA, Medical imaging, Data harmonization, Meta-analyzis, Mega-analyzis, Fed-BioMed, Bayesian optimization, Radom effect models, FedComBat, Apprentissage fédéré, Santé, Protection des données, RGPD, CCPA, Imageie médicale, Harmonisation des données, Méta-analyse, Méganalyse, Fed-BioMed, Optimisation bayésienne, Modèles à effets aléatoires, FedComBat}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-04249209/file/2023COAZ4056.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-04249209}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{tourniaire:tel-04189450, OPTADDRESS = {}, AUTHOR = {Paul Tourniaire}, MONTH = {June}, OPTNOTE = {}, NUMBER = {2023COAZ4041}, SCHOOL = {Université Côte d'Azur}, TITLE = {AI-based selection of imaging and biological markers predictive of therapy response in lung cancer}, TYPE = {Theses}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Digital pathology, Multiple instance learning, Mixed supervision, Deep learning, Survival analysis, Lung cancer, Immunotherapy, Histopathologie numérique, Apprentissage multi-instance, Supervision mélangée, Apprentissage profond, Analyse de survie, Cancer du poumon, Immunothérapie}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-04189450v2/file/2023COAZ4041.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-04189450}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{dadoun:tel-03984539, OPTADDRESS = {}, AUTHOR = {Hind Dadoun}, MONTH = {December}, OPTNOTE = {}, NUMBER = {2022COAZ4071}, SCHOOL = {Université Côte d'Azur}, TITLE = {AI-based analysis of abdominal ultrasound images to support medical diagnosis}, TYPE = {Theses}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Ultrasound imaging, Bayesian learning, Object detection, Self-supervised learning, Semi-supervised learning, Natural language processing, Imagerie ultrasonore, Apprentissage bayésien, Détection d'objets, Apprentissage auto-supervisé, Apprentissage semi-supervisé, Traitement du langage naturel}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/tel-03984539v2/file/2022COAZ4071.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/tel-03984539}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{jousse:tel-03890672, OPTADDRESS = {}, AUTHOR = {Florent Jousse}, MONTH = {September}, OPTNOTE = {}, NUMBER = {2022COAZ4052}, SCHOOL = {Université Côte d'Azur}, TITLE = {Statistical modeling of face morphology for dermatology and plastic surgery}, TYPE = {Theses}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Statistical shape modeling, Shape registration, Face modeling, Geodesic kernel, Disentangled learning, Partial least squares, Modélisation statistique de forme, Recalage de formes, Modélisation du visage, Noyau géodésique, Démêlage de représentations, Moindres carrés partiels}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-03890672/file/2022COAZ4052.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-03890672}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{ly:tel-04088542, OPTADDRESS = {}, AUTHOR = {Buntheng Ly}, MONTH = {December}, OPTNOTE = {}, NUMBER = {2022COAZ4105}, SCHOOL = {Université Côte d'Azur}, TITLE = {Deep learning on large clinical databases for image-based predictions of cardiac arrhythmias}, TYPE = {Theses}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac arrhythmia, Artificial intelligence, Explainable learning, Cardiac imaging, Multi-modality, Arythmie cardiaque, Intelligence artificielle, Modèle explicable, Imagerie cardiaque, Multi-modalité}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-04088542/file/2022COAZ4105.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-04088542}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{thanwerdas:tel-03698752, OPTADDRESS = {}, AUTHOR = {Yann Thanwerdas}, MONTH = {May}, OPTNOTE = {}, NUMBER = {2022COAZ4024}, SCHOOL = {Université Côte d'Azur}, TITLE = {Riemannian and stratified geometries on covariance and correlation matrices}, TYPE = {Theses}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Riemannian geometry, Covariance matrices, Correlation matrices, Families of metrics, Geodesics, Stratified spaces, Géométrie riemannienne, Matrices de covariance, Matrices de corrélation, Familles de métriques, Géodésiques, Espaces stratifiés}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/tel-03698752v2/file/2022COAZ4024.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/tel-03698752}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{abinader:tel-03377153, OPTADDRESS = {}, AUTHOR = {Abi Nader, Clément}, MONTH = {June}, OPTNOTE = {}, NUMBER = {2021COAZ4033}, SCHOOL = {Université Côte d'Azur}, TITLE = {Modelling and simulating the progression of Alzheimer's disease through the analysis of multi-modal neuroimages and clinical data}, TYPE = {Theses}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Alzheimer's disease, Clinical trials, Magnetic resonance imaging, Positron emission tomography, Machine learning, Gaussian processes, Variational autoencoder, Dynamical systems, Maladie d'Alzheimer, Essais cliniques, Imagerie par résonance magnétique, Tomographie par émission de positons, Apprentissage automatique, Processus gaussiens, Auto-encodeur variationnel, Systèmes dynamiques}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-03377153v2/file/2021COAZ4033.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-03377153}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{antelmi:tel-03474169, OPTADDRESS = {}, AUTHOR = {Luigi Antelmi}, MONTH = {July}, OPTNOTE = {}, NUMBER = {2021COAZ4050}, SCHOOL = {Université Côte d'Azur}, TITLE = {Statistical learning on heterogeneous medical data with bayesian latent variable models : application to neuroimaging dementia studies}, TYPE = {Theses}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Alzheimer's disease, Neuro-imaging, Magnetic resonance imaging, Positron emission tomography, Variational autoencoder, Multi-task learning, High dimensional data, Maladie d'Alzheimer, Neuro-imagerie, Imagerie par résonnance magnétique, Tomographie par émission de positrons, Auto-encodeur variationnel, Apprentissage multi-tâche, Données de haute dimension, Données multimodales}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-03474169v2/file/2021COAZ4050.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-03474169}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{audelan:tel-03406789, OPTADDRESS = {}, AUTHOR = {Benoît Audelan}, MONTH = {July}, OPTNOTE = {}, NUMBER = {2021COAZ4054}, SCHOOL = {Université Côte d'Azur}, TITLE = {Probabilistic segmentation modelling and deep learning-based lung cancer screening}, TYPE = {Theses}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Medical imaging, Image segmentation, Artificial intelligence, Machine learning, Deep learning, Lung cancer, Imagerie médicale, Segmentation d'images, Intelligence artificielle, Apprentissage artificiel, Apprentissage profond, Cancer du poumon}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-03406789/file/2021COAZ4054.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-03406789}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{bacoyannis:tel-03621337, OPTADDRESS = {}, AUTHOR = {Tania Bacoyannis}, MONTH = {December}, OPTNOTE = {}, NUMBER = {2021COAZ4111}, SCHOOL = {Université Côte d'Azur}, TITLE = {Deep probabilistic generative model for the inverse problem of electrocardiography}, TYPE = {Theses}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac activation, Computational modelling, Data processing, Deep learning, Electrocardiography, Generative model, Inverse problem, Activation cardiaque, Apprentissage profond, Électrocardiographique, Modélisation numérique, Modèle génératif, Problème inverse, Traitement de données}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-03621337/file/2021COAZ4111.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-03621337}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{banus:tel-03242796, OPTADDRESS = {}, AUTHOR = {Jaume Banus}, MONTH = {May}, OPTNOTE = {}, NUMBER = {2021COAZ4030}, SCHOOL = {Université Côte d'Azur}, TITLE = {Heart & Brain. Linking cardiovascular pathologies and neurodegeneration with a combined biophysical and statistical methodology}, TYPE = {Theses}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Medical imaging, Cardiovascular modelling, Neurodegeneration, Lumped models, Machine learning, Variational autoencoder, Gaussian process, Personalisation, Imagerie médicale, Modélisation cardiovasculaire, Neurodégénérescence, Modèles regroupés, Apprentissage automatique, Autoencodeur variationnel, Processus Gaussien, Personnalisation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/tel-03242796v2/file/thesis.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/tel-03242796}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{guigui:tel-03563980, OPTADDRESS = {}, AUTHOR = {Nicolas Guigui}, MONTH = {November}, OPTNOTE = {}, NUMBER = {2021COAZ4081}, SCHOOL = {Université Côte d'Azur}, TITLE = {Computational methods for statistical estimation on Riemannian manifolds and application to the study of the cardiac deformations}, TYPE = {Theses}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Differential geometry, Computational anatomy, Geometric statistics, Géométrie différentielle, Anatomie computationnelle, Statistiques géométriques}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-03563980v2/file/2021COAZ4081.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-03563980}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{wang:tel-03827231, OPTADDRESS = {}, AUTHOR = {Zihao Wang}, MONTH = {September}, OPTNOTE = {}, NUMBER = {2021COAZ4120}, SCHOOL = {Université Côte d'Azur}, TITLE = {Deep generative learning for medical data processing, analysis and modeling : application to cochlea CT imaging}, TYPE = {Theses}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Generative learning, Bayesian learning, Stochastic flow, Deep learing, Generative learning, Apprentissage génératif, Apprentissage bayésien, Flux stochastique, Apprentissage profond, Apprentissage génératif}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-03827231v2/file/2021COAZ4120.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-03827231}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{cedilnik:tel-03147908, OPTADDRESS = {}, AUTHOR = {Nicolas Cedilnik}, MONTH = {December}, OPTNOTE = {}, NUMBER = {2020COAZ4097}, SCHOOL = {Université Côte d'Azur}, TITLE = {Image-based Personalised Models of Cardiac Electrophysiology for Ventricular Tachycardia Therapy Planning}, TYPE = {Theses}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Ventricular tachycardia, Model personalisation, Cardiac electrophysiology, Computed tomography, Tachycardie ventriculaire, Personnalisation de modèles, Électrophysiologie cardiaque, Imagerie tomodensitométrique}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/tel-03147908v2/file/2020COAZ4097.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/tel-03147908}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{krebs:tel-02954033, OPTADDRESS = {}, AUTHOR = {Julian Krebs}, MONTH = {June}, OPTNOTE = {}, NUMBER = {2020COAZ4032}, SCHOOL = {Université Côte d'Azur}, TITLE = {Robust medical image registration and motion modeling based on machine learning}, TYPE = {Theses}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Medical Image Registration, Motion Modeling, Machine Learning, Varitiaonal Autoencoder, Sudden Cardiac Death Risk, Recalage d'images médicales, Modélisation du mouvement, Apprentissage profond}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/tel-02954033v2/file/2020COAZ4032.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/tel-02954033}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{lorenzi:tel-03150585, OPTADDRESS = {}, AUTHOR = {Marco Lorenzi}, MONTH = {January}, OPTNOTE = {}, SCHOOL = {UCA}, TITLE = {Modelling pathological processes from heterogeneous and high-dimensional biomedical data}, TYPE = {Habilitation à diriger des recherches}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {statistical learning, medical imaging, brain, machine learning, Alzheimer's disease, federated learning, genetics, apprentissage statistique, imageie medicale, cerveau, apprentissage par ordinateurs, maladie d'Alzheimer, apprentissge féderé genetics}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/tel-03150585/file/hdr_2.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/tel-03150585}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{wei:tel-02862395, OPTADDRESS = {}, AUTHOR = {Wen Wei}, MONTH = {June}, OPTNOTE = {}, NUMBER = {2020COAZ4021}, SCHOOL = {Université Côte d'Azur}, TITLE = {Learning brain alterations in multiple sclerosis from multimodal neuroimaging data}, TYPE = {Theses}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Multiple Sclerosis, PET Imaging, MR Imaging, Brain Alterations, Deep Learning, Convolutional Neural Networks (CNN), Generative Adversarial Network (GAN), Image Synthesis, Missing MRI Sequences, Missing Modalities, Sclérose en Plaques, TEP, IRM, Altérations cérébrales, Apprentissage en profondeur, Réseau de Neurones Convolutifs (CNN), Réseaux Antagonistes Génératifs (GAN), Synthèse d'images, Séquences IRM Manquantes, Modalités Manquantes}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-02862395v2/file/2020COAZ4021.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-02862395}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{jia:tel-02428638, OPTADDRESS = {}, AUTHOR = {Shuman Jia}, MONTH = {December}, OPTNOTE = {}, NUMBER = {2019AZUR4105}, SCHOOL = {COMUE Université Côte d'Azur (2015 - 2019)}, TITLE = {Population-based models of shape, structure, and deformation in atrial fibrillation}, TYPE = {Theses}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac image analysis, Atrial fibrillation, Segmentation, Fat, Statistical shape analysis, Parallel transport, Analyse d'images cardiaques, Fibrillation auriculaire, Segmentation, Graisse, Analyse statistique des formes, Transport parallèle}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/tel-02428638v2/file/2019AZUR4105.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/tel-02428638}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{mlynarski:tel-02358374, OPTADDRESS = {}, AUTHOR = {Pawel Mlynarski}, MONTH = {November}, OPTNOTE = {}, NUMBER = {2019AZUR4084}, SCHOOL = {COMUE Université Côte d'Azur (2015 - 2019)}, TITLE = {Deep learning for segmentation of brain tumors and organs at risk in radiotherapy planning}, TYPE = {Theses}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Convolutional Neural Networks, Semi-supervised learning, MRI, Radiotherapy, Brain tumor, Organs at risk, Réseau neuronal convolutif, Apprentissage semi-supervisé, IRM, Radiothérapie, Tumeur cérébrale, Organes à risque}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/tel-02358374v2/file/2019AZUR4084.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/tel-02358374}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{sivera:tel-02389924, OPTADDRESS = {}, AUTHOR = {Raphaël Sivera}, MONTH = {November}, OPTNOTE = {}, NUMBER = {2019AZUR4082}, SCHOOL = {COMUE Université Côte d'Azur (2015 - 2019)}, TITLE = {Modeling and measuring the brain morphological evolution using structural MRI in the context of neurodegenerative diseases}, TYPE = {Theses}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Multivariate statistical analysis, Longitudinal models, Morphometry, Aging, Alzheimer's disease, MRI, Vieillissement, Maladie d'Alzheimer, IRM, Modèles longitudinaux, Statistiques multivariées, Morphométrie}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-02389924v2/file/2019AZUR4082.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-02389924}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{zheng:tel-02083415, OPTADDRESS = {}, AUTHOR = {Qiao Zheng}, MONTH = {March}, OPTNOTE = {}, NUMBER = {2019AZUR4013}, SCHOOL = {COMUE Université Côte d'Azur (2015 - 2019)}, TITLE = {Deep learning for robust segmentation and explainable analysis of 3d and dynamic cardiac images}, TYPE = {Theses}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cine MRI, Cardiac analysis, Cardiac segmentation, Deep learning, Apprentissage profond, Segmentation cardiaque, Analyse cardiaque, Ciné-IRM}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-02083415v2/file/2019AZUR4013.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-02083415}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{moceri:tel-01781331, OPTADDRESS = {}, AUTHOR = {Pamela Moceri}, MONTH = {January}, OPTNOTE = {}, NUMBER = {2018AZUR4003}, SCHOOL = {Université Côte d'Azur}, TITLE = {From normal right ventricle to pathology : shape and function analysis with different loading conditions using imaging and modelling}, TYPE = {Theses}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Medical imaging, Echocardiography, Strain imaging, Right ventricle, Modélisation, Échocardiographie, Imagerie médicale, Fonction ventriculaire droite}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01781331/file/2018AZUR4003.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01781331}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{demarcy:tel-01609910, OPTADDRESS = {}, AUTHOR = {Thomas Demarcy}, MONTH = {July}, OPTNOTE = {}, NUMBER = {2017AZUR4052}, SCHOOL = {Université Côte d'Azur}, TITLE = {Segmentation and study of anatomical variability of the cochlea from medical images}, TYPE = {Theses}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Shape model, Shape variability, Segmentation, Cochlea, Cochlée, Segmentation, Modèle de forme, Variabilité anatomique}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01609910/file/2017AZUR4052.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01609910}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{devilliers:tel-01683607, OPTADDRESS = {}, AUTHOR = {Loïc Devilliers}, MONTH = {November}, OPTNOTE = {}, NUMBER = {2017AZUR4103}, SCHOOL = {Université Côte d'Azur}, TITLE = {Consistency of statistics in infinite dimensional quotient spaces}, TYPE = {Theses}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Quotient space, Template estimation, Frechet mean, Espace quotient, Estimation de template, Moyenne de Fréchet}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/tel-01683607v2/file/2017AZUR4103.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/tel-01683607}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{giffardroisin:tel-01771476, OPTADDRESS = {}, AUTHOR = {Sophie Giffard-Roisin}, MONTH = {December}, OPTNOTE = {}, SCHOOL = {Université côte d'azur}, TITLE = {Non-invasive Personalisation of Cardiac Electrophysiological Models from Surface Electrograms}, TYPE = {Theses}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {ECG Imaging, Personalisation, Cardiac Electrophysiology Model, Machine learning, Simulated database, Inverse problem, Imagerie ECG, Personnalisation, Modèle electrophysiologique cardique, Apprentissage machine, Base de données simulée, Problème inverse}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/tel-01771476v2/file/Thesis_english.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/tel-01771476}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{mollero:tel-01737200, OPTADDRESS = {}, AUTHOR = {Roch Molléro}, MONTH = {December}, OPTNOTE = {}, NUMBER = {2017AZUR4106}, SCHOOL = {COMUE Université Côte d'Azur (2015 - 2019)}, TITLE = {Robust personalisation of 3D electromechanical cardiac models. Application to heterogeneous and longitudinal clinical databases}, TYPE = {Theses}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiax modelling, Parameter estimation, Multifidelity methods, Prior probabilities, Modélisation cardiaque, Estimation de paramètres, Méthodes multi-échelles, Probabilités a priori}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01737200/file/2017AZUR4106.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01737200}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{rohe:tel-01575292, OPTADDRESS = {}, AUTHOR = {Marc-Michel Rohé}, MONTH = {July}, OPTNOTE = {}, NUMBER = {2017AZUR4051}, SCHOOL = {Université Côte d'Azur}, TITLE = {Reduced representation of segmentation and tracking in cardiac images for group-wise longitudinal analysis}, TYPE = {Theses}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Medical image analysis, Non-rigid registration, Deep learning, Statistical model reduction, Longitudinal analysis, Analyse d'images médicales, Analyse longitudinale, Réduction statistique de modèle, Apprentissage profond, Recalage non-rigide}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/tel-01575292v2/file/2017AZUR4051.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/tel-01575292}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{hadjhamou:tel-01416569, OPTADDRESS = {}, AUTHOR = {Mehdi Hadj-Hamou}, MONTH = {December}, OPTNOTE = {}, NUMBER = {2016AZUR4141}, SCHOOL = {Université Côte d'Azur}, TITLE = {Beyond volumetry in longitudinal deformation-based morphometry : application to sexual dimorphism during adolescence}, TYPE = {Theses}, YEAR = {2016}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Longitudinal images, Evaluation, Volumetric methods, Processing pipeline, Non-rigid registration, Sexual dimorphism, Group comparison, Multivariate statistics, Images longitudinales, Évaluation, Statistiques multivariées, Comparaison de groupe, Dimorphisme sexuel, Chaîne de traitement, Recalage non-linéaire, Méthodes pour la volumétrie}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01416569v2/file/2016AZUR4141.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01416569}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{khanal:tel-01384678, OPTADDRESS = {}, AUTHOR = {Bishesh Khanal}, MONTH = {July}, OPTNOTE = {}, NUMBER = {2016NICE4046}, SCHOOL = {Université Nice Sophia Antipolis}, TITLE = {Modeling and simulation of realistic longitudinal structural brain MRIs with atrophy in Alzheimer's disease}, TYPE = {Theses}, YEAR = {2016}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Neurodegeneration, Alzheimer's disease, Biophysical modelling, Simulation of atrophy, Longitudinal MRIs simulation, Biomechanical simulation, Synthetic longitudinal images, Neurodégénérescence, Maladie d'Alzheimer, Modélisation biophysique, Simulation de l'atrophie, Simulation d'IRM longitudinale, Simulation biomécanique, Images longitudinales synthétiques}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01384678/file/2016NICE4046.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01384678}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{le:tel-01376688, OPTADDRESS = {}, AUTHOR = {Matthieu Lê}, MONTH = {June}, OPTNOTE = {}, NUMBER = {2016NICE4034}, SCHOOL = {Université Nice Sophia Antipolis}, TITLE = {Brain tumor growth modeling : application to radiotherapy}, TYPE = {Theses}, YEAR = {2016}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Medical imaging, Biophysical model, Personalization, Radiotherapy, Segmentation, Uncertainty, Imagerie médicale, Modèle biophysique, Personnalisation, Radiothérapie, Segmentation, Incertitude}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01376688v2/file/Thesis_Matthieu_Le.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01376688}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{miolane:tel-01411886, OPTADDRESS = {}, AUTHOR = {Nina Miolane}, MONTH = {December}, OPTNOTE = {}, NUMBER = {2016AZUR4146}, SCHOOL = {Université Côte d'Azur}, TITLE = {Geometric statistics for computational anatomy}, TYPE = {Theses}, YEAR = {2016}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Anatomy, Statistics, Geometry, Medical imaging, Imagerie médicale, Anatomie, Géométrie, Statistiques}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01411886v2/file/2016AZUR4146.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01411886}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{sermesant:tel-01337145, OPTADDRESS = {}, AUTHOR = {Maxime Sermesant}, MONTH = {June}, OPTNOTE = {}, SCHOOL = {Université de Nice - Sophia Antipolis}, TITLE = {When Cardiac Biophysics Meets Groupwise Statistics: Complementary Modelling Approaches for Patient-Specific Medicine}, TYPE = {Habilitation à diriger des recherches}, YEAR = {2016}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {cardiac modelling, biophysics, statistics, machine learning, modélisation cardiaque}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/tel-01337145/file/HDR.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/tel-01337145}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{vemuri:tel-01310047, OPTADDRESS = {}, AUTHOR = {Anant Suraj Vemuri}, MONTH = {April}, OPTNOTE = {}, NUMBER = {2016NICE4018}, SCHOOL = {Université Nice Sophia Antipolis}, TITLE = {Inter-operative biopsy site relocalization in gastroscopy : application to oesophagus}, TYPE = {Theses}, YEAR = {2016}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Gastro-intestinal endoscopy, Inter-operative relocalization, Electromagnetic tracking, Endoscopie gastro-intestinale, Relocalisation préopératoire, Suivi électromagnétique}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01310047v3/file/2016NICE4018.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01310047}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{audigier:tel-01256010, OPTADDRESS = {}, AUTHOR = {Chloé Audigier}, MONTH = {October}, OPTNOTE = {}, NUMBER = {2015NICE4071}, SCHOOL = {Université Nice Sophia Antipolis}, TITLE = {Computational modeling of radiofrequency ablation for the planning and guidance of abdominal tumor treatment}, TYPE = {Theses}, YEAR = {2015}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {RFA Modeling, Liver, Patient-Specific, Heat transfer, Cellular necrosis, Computational fluid dynamics, Computer model, Lattice Boltzmann method, Parameter estimation, Pre-clinical study, Medical imaging, Modélisation d'ARF, Foie, Personnalisation, Diffusion de la chaleur, Nécrose cellulaire, Mécanique des fluides, Modèle informatique, Méthode de Lattice Boltzmann, Estimation de paramètres, Étude préclinique, Imagerie médicale}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01256010/file/2015NICE4071.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01256010}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{benseghir:tel-01235141, OPTADDRESS = {}, AUTHOR = {Thomas Benseghir}, MONTH = {July}, OPTNOTE = {}, SCHOOL = {Université de Nice-Sophia Antipolis}, TITLE = {Topology Preserving Vascular Registration: Application to Percutaneous Coronary Intervention}, TYPE = {Theses}, YEAR = {2015}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {3D/2D Registration, Coronary Arteries, Recalage 3D/2D, Artères Coronaires}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/tel-01235141/file/ThesisManuscript_ThomasBenseghir.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/tel-01235141}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{cabreralozoya:tel-01206478, OPTADDRESS = {}, AUTHOR = {Cabrera Lozoya, Rocìo}, MONTH = {September}, OPTNOTE = {}, NUMBER = {2015NICE4059}, SCHOOL = {Université Nice Sophia Antipolis}, TITLE = {Radiofrequency ablation planning for cardiac arrhythmia treatment using modeling and machine learning approaches}, TYPE = {Theses}, YEAR = {2015}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac electrophysiology modeling, Intracardiac electrogram modeling, Machine learning, Radiofrequency ablation planning, Electroanatomical mapping, Local abnormal ventricular activities (LAVA), Modélisation de l'électrophysiologie cardiaque, Modélisation d'électrogrammes intracardiaques, Apprentissage automatique, Planification d'ablation par radiofréquence, Activités ventriculaires anormales locales LAVA}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01206478v2/file/2015NICE4059.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01206478}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{cordier:tel-01237853, OPTADDRESS = {}, AUTHOR = {Nicolas Cordier}, MONTH = {December}, OPTNOTE = {}, NUMBER = {2015NICE4111}, SCHOOL = {Université Nice Sophia Antipolis}, TITLE = {Multi-atlas patch-based segmentation and synthesis of brain tumor MR images}, TYPE = {Theses}, YEAR = {2015}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Patch-based, Multi-atlas, Glioma, Segmentation, Probabilistic generative model, Medical image simulation, Modality synthesis, Appariement de blocs de voxels, Multi-atlas, Gliome, Segmentation, Modèle génératif probabiliste, Simulation d'image médicale, Synthèse de modalité}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01237853v2/file/2015NICE4111.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01237853}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{gupta:tel-01159964, OPTADDRESS = {}, AUTHOR = {Vikash Gupta}, MONTH = {March}, OPTNOTE = {}, NUMBER = {2015NICE4007}, SCHOOL = {Université Nice Sophia Antipolis}, TITLE = {Diffusion tensor imaging of the brain : towards quantitative clinical tools}, TYPE = {Theses}, YEAR = {2015}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Clinical DTI, Multimodal brain atlas, Population based statistical analysis, HIV, DTI clinique, Super-résolution, Multimodales atlas du cerveau, Analyse statistique basée sur la population, VIH}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01159964/file/2015NICE4007.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01159964}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{lefolgoc:tel-01316449, OPTADDRESS = {}, AUTHOR = {Le Folgoc, Loïc}, MONTH = {November}, OPTNOTE = {}, NUMBER = {2015NICE4098}, SCHOOL = {Université Nice Sophia Antipolis}, TITLE = {Statistical learning for image-based personalization of cardiac models}, TYPE = {Theses}, YEAR = {2015}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Inverse problem, Cardiac motion tracking, Non-rigid registration, Structured sparse bayesian learning, Automatic relevance determination, Suivi de mouvement cardiaque, Problème inverse, Modélisation bayésienne parcimonieuse structurée, Recalage non-rigide, Détermination automatique, MCMC}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-01316449/file/2015NICE4098.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-01316449}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{margeta:tel-01243340, OPTADDRESS = {}, AUTHOR = {Jan Margeta}, MONTH = {December}, OPTNOTE = {}, NUMBER = {2015ENMP0055}, SCHOOL = {Ecole Nationale Supérieure des Mines de Paris}, TITLE = {Machine Learning for Simplifying the Use of Cardiac Image Databases}, TYPE = {Theses}, YEAR = {2015}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://pastel.archives-ouvertes.fr/tel-01243340v2/document}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://pastel.archives-ouvertes.fr/tel-01243340}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{stretton:tel-01144425, OPTADDRESS = {}, AUTHOR = {Erin Stretton}, MONTH = {November}, OPTNOTE = {}, NUMBER = {2014ENMP0064}, SCHOOL = {Ecole Nationale Supérieure des Mines de Paris}, TITLE = {Simulation of patient-specific glioma models for therapy planning}, TYPE = {Theses}, YEAR = {2014}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Brain Tumor Modeling, Glioma Modeling, Computer Model, Medical Imaging, Patient-Specific, Ficher Kolmogorov Model, Modélisation de Tumeur Cérébrale, Patient-Spécifique, Imagerie Médicale, Modèle de Fisher Kolmogorov, Modèlisation numérique, Modélisation de Gliome}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://pastel.hal.science/tel-01144425/file/2014ENMP0064.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://pastel.hal.science/tel-01144425}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{talbot:tel-01097201, OPTADDRESS = {}, AUTHOR = {Hugo Talbot}, MONTH = {July}, OPTNOTE = {}, SCHOOL = {Université des Sciences et Technologies de Lille}, TITLE = {Interactive Patient-Specific Simulation of Cardiac Electrophysiology}, TYPE = {Theses}, YEAR = {2014}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac Electrophysiology Modeling, Real-Time Simulation, Arrhythmia Modeling, Cardiac Electromechanics, Nonlinear Optimisation, Model Personalization, Endovascular Navigation, Training Simulation, Radio- Frequency Ablation Planning, SOFA Framework, Modélisation de l'Électrophysiologie Cardiaque, Simulation Temps-Réel, Modélisation d'Arythmie, Électromécanique Cardiaque, Optimisation Non-linéaire, Personnalisation de Modèle, Navigation Endovasculaire, Simulation d'Entrainement, Ablation Radio-Fréquence, Planning d'Ablation, Framework de Simulation SOFA}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/tel-01097201/file/Thesis.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/tel-01097201}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{breuilly:tel-00908962, OPTADDRESS = {}, AUTHOR = {Marine Breuilly}, MONTH = {November}, OPTNOTE = {}, NUMBER = {2013NICE4100}, SCHOOL = {Université Nice Sophia Antipolis}, TITLE = {Small animal 4D SPECT imaging : assessment of respiratory motion and iodide biodistribution}, TYPE = {Theses}, YEAR = {2013}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Compartmental analysis, Small animal, Dynamic images, Respiratory motion, Respiratory gating, 99mTc-pertechnetate biodistribution, SPECT, Analyse compartimentale, Biodistribution du 99mTc-pertechnétate, Synchronisation respiratoire, Mouvement respiratoire, Images dynamiques, Petit animal, TEMP}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-00908962v3/file/2013NICE4100.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-00908962}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{geremia:tel-00838795, OPTADDRESS = {}, AUTHOR = {Ezequiel Geremia}, MONTH = {January}, OPTNOTE = {}, NUMBER = {2013NICE4007}, SCHOOL = {Université Nice Sophia Antipolis}, TITLE = {Spatial random forests for brain lesions segmentation in MRIs and model-based tumor cell extrapolation}, TYPE = {Theses}, YEAR = {2013}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {MRI, Segmentation, Regression, Random forests, Multiple sclerosis, Gliomas, Cell density, IRM, Forêts aléatoires, Sclérose en plaques, Gliomes, Densité cellulaire}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-00838795/file/2013NICE4007.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-00838795}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{marchesseau:pastel-00820082, OPTADDRESS = {}, AUTHOR = {Stephanie Marchesseau}, MONTH = {January}, OPTNOTE = {}, NUMBER = {2012ENMP0082}, SCHOOL = {Ecole Nationale Supérieure des Mines de Paris}, TITLE = {Simulation de modèles personnalisés du coeur pour la prédiction de thérapies cardiaques}, TYPE = {Theses}, YEAR = {2013}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac modeling, Cardiac mechanics, Computer model, Medical imaging, Patient-specific, Specificity analysis, Modélisation Cardiaque, Mécanique Cardiaque, Modèle Informatique, Imagerie Médicale, Personnalisation, Etude de Spécificité}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://pastel.hal.science/pastel-00820082/file/2012ENMP0082.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://pastel.hal.science/pastel-00820082}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{mcleod:tel-00942556, OPTADDRESS = {}, AUTHOR = {Kristin Mcleod}, MONTH = {November}, OPTNOTE = {}, NUMBER = {2013NICE4091}, SCHOOL = {Université Nice Sophia Antipolis}, TITLE = {Reduced-order statistical models of cardiac growth, motion and blood flow : application to the tetralogy of Fallot heart}, TYPE = {Theses}, YEAR = {2013}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Tetralogy of Fallot, Statistical model reduction, Non-rigid registration, Medical image analysis, Analyse d'images médicales, Recalage, Modèles statistiques réduits, Tétralogie de Fallot}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-00942556/file/2013NICE4091.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-00942556}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{prakosa:tel-00837857, OPTADDRESS = {}, AUTHOR = {Adityo Prakosa}, MONTH = {January}, OPTNOTE = {}, NUMBER = {2013NICE4003}, SCHOOL = {Université Nice Sophia Antipolis}, TITLE = {Analysis and simulation of multimodal cardiac images to study the heart function}, TYPE = {Theses}, YEAR = {2013}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac motion tracking, Synthetic cardiac sequences, Cardiac inverse electro-kinematic learning, Suivi de mouvement cardiaque, Simulation de séquences synthétiques d'images cardiaque, Problème inverse du couplage électro-cinématique}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://theses.hal.science/tel-00837857/file/2013NICE4003.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://theses.hal.science/tel-00837857}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Lorenzi:PhD:12, OPTADDRESS = {}, AUTHOR = {Marco Lorenzi}, MONTH = {December}, OPTNOTE = {}, SCHOOL = {University of Nice Sophia Antipolis}, TITLE = {Deformation-based morphometry of the brain for the development of surrogate markers in Alzheimer's disease}, TYPE = {Ph.D. Thesis}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Marco.Lorenzi/PhDThesis.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://tel.archives-ouvertes.fr/tel-00844577}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Relan:PhD:12, OPTADDRESS = {}, AUTHOR = {Jatin Relan}, MONTH = {June}, OPTNOTE = {}, SCHOOL = {Ecole Nationale Supérieure des Mines de Paris}, TITLE = {Personalised Electrophysiological Models of Ventricular Tachycardia for Radio Frequency Ablation Therapy Planning}, TYPE = {Ph.D. Thesis}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Jatin.Relan/JatinRELAN-Thesis-Manuscript_compressed_final.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://pastel.archives-ouvertes.fr/pastel-00794165}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Seiler:PhD:12, OPTADDRESS = {}, AUTHOR = {Christof Seiler}, MONTH = {September}, OPTNOTE = {}, SCHOOL = {University of Nice Sophia Antipolis and University of Bern}, TITLE = {Trees on Geometrical Deformations to Model the Statistical Variability of Organs in Medical Images}, TYPE = {Ph.D. Thesis}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Christof.Seiler/Seiler_PhDThesis.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://tel.archives-ouvertes.fr/tel-00844610}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Toussaint:PhD:12, OPTADDRESS = {}, AUTHOR = {Nicolas Toussaint}, MONTH = {July}, OPTNOTE = {}, SCHOOL = {King's College London}, TITLE = {Curvilinear Analysis and Approximation of Cardiac DTI In-Vivo}, TYPE = {PhD Thesis}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/PhDThesis-NicolasToussaint.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://tel.archives-ouvertes.fr/tel-00846248}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Andre:PhD:11, OPTADDRESS = {}, AUTHOR = {Barbara André}, MONTH = {October}, OPTNOTE = {}, SCHOOL = {Ecole Nationale Supérieure des Mines de Paris}, TITLE = {Smart Atlas for Endomicroscopy Diagnosis Support: A Clinical Application of Content-Based Image Retrieval}, TYPE = {Ph.D. Thesis}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Barbara.Andre/PhD-Thesis-Barbara-ANDRE.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Chung:PhD:11, OPTADDRESS = {}, AUTHOR = {François Chung}, MONTH = {January}, OPTNOTE = {}, SCHOOL = {Ecole Nationale Supérieure des Mines de Paris}, TITLE = {Regional appearance modeling for deformable model-based image segmentation}, TYPE = {Ph.D. Thesis}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Francois.Chung/Phd-Thesis_Francois-Chung.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://pastel.archives-ouvertes.fr/pastel-00575796/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Ramus:PhD:11, OPTADDRESS = {}, AUTHOR = {Liliane Ramus}, MONTH = {Juillet}, OPTNOTE = {}, SCHOOL = {Université de Nice Sophia Antipolis}, TITLE = {Conception et utilisation d'atlas anatomiques pour la segmentation automatique : application à la radiothérapie des cancers ORL}, TYPE = {Thèse de sciences}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Liliane.Ramus/These_Liliane_Ramus.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {no}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Billet:PhD:10, OPTADDRESS = {}, AUTHOR = {Florence Billet}, MONTH = {July}, OPTNOTE = {}, SCHOOL = {Université Nice Sophia-Antipolis}, TITLE = {Assimilation de données images pour la personnalisation d'un modèle électromécanique du coeur}, TYPE = {Thèse de sciences (PhD Thesis)}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/billetThese.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Durrleman:PhD:10, OPTADDRESS = {}, AUTHOR = {Stanley Durrleman}, MONTH = {March}, OPTNOTE = {}, SCHOOL = {Université de Nice-Sophia Antipolis}, TITLE = {Statistical models of currents for measuring the variability of anatomical curves, surfaces and their evolution}, TYPE = {Thèse de sciences (PhD Thesis)}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Stanley.Durrleman/Durrleman_thesis.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://tel.archives-ouvertes.fr/tel-00631382}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{fernandez:phd:2010, OPTADDRESS = {}, AUTHOR = {Romain Fernandez}, MONTH = {November}, OPTNOTE = {}, SCHOOL = {Université Montpellier 2}, TITLE = {Reconstruction tridimensionnelle et suivi de lignées cellulaires à partir d'images de microscopie laser : application à des tissus végétaux}, TYPE = {Thèse de sciences}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/fernandez-phd-2010.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Hufnagel:PhD:2010, OPTADDRESS = {}, AUTHOR = {Heike Hufnagel}, MONTH = {July}, OPTNOTE = {}, SCHOOL = {University of Lübeck}, TITLE = {A probabilistic framework for point-based shape modeling in medical image analysis}, TYPE = {PhD Thesis}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Heike.Hufnagel/Hufnagel_PhD.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://tel.archives-ouvertes.fr/tel-00844717}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Mansi:PhD:10, OPTADDRESS = {}, AUTHOR = {Tommaso Mansi}, MONTH = {September}, OPTNOTE = {}, SCHOOL = {Ecole Nationale Supérieure des Mines de Paris}, TITLE = {Image-Based Physiological and Statistical Models of the Heart, Application to Tetralogy of Fallot}, TYPE = {Thèse de sciences (PhD Thesis)}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Tommaso.Mansi/mansi_thesis.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/tel-00530956/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Konukoglu:PhD:2009, OPTADDRESS = {}, AUTHOR = {Ender Konukoglu}, MONTH = {February}, OPTNOTE = {}, SCHOOL = {Université Nice Sophia-Antipolis}, TITLE = {Modeling Glioma Growth and Personalizing Growth Models in Medical Images}, TYPE = {PhD Thesis}, YEAR = {2009}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Ender.Konukoglu/konukoglu_thesis.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://tel.archives-ouvertes.fr/tel-00633697}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Peyrat:PhD:2009, OPTADDRESS = {}, AUTHOR = {Jean-Marc Peyrat}, MONTH = {November}, OPTNOTE = {}, SCHOOL = {Nice Sophia Antipolis University}, TITLE = {Comparison of Cardiac Anatomy and Function: Statistics on Fibre Architecture from DT-MRI and Registration of 4D CT Images}, TYPE = {PhD Thesis}, YEAR = {2009}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Jean-Marc.Peyrat/Peyrat_2009_PhDThesis.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://tel.archives-ouvertes.fr/tel-00633206}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Souplet:PhD:09, OPTADDRESS = {}, AUTHOR = {Jean-Christophe Souplet}, MONTH = {January}, OPTNOTE = {}, SCHOOL = {Université de Nice -- Sophia-Antipolis}, TITLE = {Évaluation de l'atrophie et de la charge lésionnelle sur des séquences IRM de patients atteints de sclérose en plaques}, TYPE = {Thèse de sciences (PhD Thesis)}, YEAR = {2009}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Jean-Christophe.Souplet/Souplet_PhDThesis.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Boisvert:PhD:2008, OPTADDRESS = {}, AUTHOR = {Jonathan Boisvert}, MONTH = {March}, OPTNOTE = {}, SCHOOL = {Université de Nice-Sophia Antipolis (France) and École Polytechnique de Montréal (Canada)}, TITLE = {Modèles de la variabilité géométrique du rachis scoliotique}, TYPE = {PhD thesis}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Jonathan.Boisvert/PhD_Boisvert.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {CA}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Costa:PhD:08, OPTADDRESS = {}, AUTHOR = {Jimena Costa}, MONTH = {March}, OPTNOTE = {}, SCHOOL = {École Nationale Supérieure des Mines de Paris}, TITLE = {Segmentation of Anatomical Structures of the Lower Abdomen using 3D Deformable Models}, TYPE = {PhD Thesis}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Costa/These.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Fillard:PhD:08, OPTADDRESS = {}, AUTHOR = {Pierre Fillard}, MONTH = {February}, OPTNOTE = {}, SCHOOL = {University of Nice-Sophia Antipolis}, TITLE = {Riemannian Processing of Tensors for Diffusion MRI and Computational Anatomy of the Brain}, TYPE = {PhD Thesis}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Pierre.Fillard/ThesisPFillard.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Vercauteren:PhD:08, OPTADDRESS = {}, AUTHOR = {Tom Vercauteren}, MONTH = {January}, OPTNOTE = {}, SCHOOL = {École Nationale Supérieure des Mines de Paris}, TITLE = {Image Registration and Mosaicing for Dynamic In Vivo Fibered Confocal Microscopy}, TYPE = {PhD Thesis}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Tom.Vercauteren/PhDThesis-TomVercauteren.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{charnoz:phd:2007, ADDRESS = {Strasbourg}, AUTHOR = {Arnaud Charnoz}, OPTMONTH = {}, OPTNOTE = {}, SCHOOL = {Université Louis Pasteur}, TITLE = {Recalage d'organes intra-patient à partir de l'étude de leur réseau vasculaire : application au foie}, OPTTYPE = {}, YEAR = {2007}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Commowick:PhD:07, OPTADDRESS = {}, AUTHOR = {Olivier Commowick}, MONTH = {February}, OPTNOTE = {}, SCHOOL = {Université de Nice -- Sophia-Antipolis}, TITLE = {Création et Utilisation d'Atlas Anatomiques Numériques pour la Radiothérapie (Design and Use of Anatomical Atlases for Radiotherapy)}, TYPE = {Thèse de sciences (PhD Thesis)}, YEAR = {2007}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Olivier.Commowick/These.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Glatard:PhD:07, OPTADDRESS = {}, AUTHOR = {Tristan Glatard}, MONTH = {November}, OPTNOTE = {}, SCHOOL = {Université de Nice -- Sophia-Antipolis}, TITLE = {Description, deployment and optimization of medical image analysis workflows on production grids}, TYPE = {Thèse de sciences (PhD Thesis)}, YEAR = {2007}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://rainbow.polytech.unice.fr/publis/glatard:2007.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Arsigny:PhD:2006, OPTADDRESS = {}, AUTHOR = {Vincent Arsigny}, MONTH = {November}, OPTNOTE = {}, SCHOOL = {École polytechnique}, TITLE = {Processing Data in Lie Groups: An Algebraic Approach. Application to Non-Linear Registration and Diffusion Tensor MRI}, TYPE = {Thèse de sciences (PhD Thesis)}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics, Polyaffine transformations, Diffeomorphisms, Non-rigid registration, Multi-affine registration, Magnetic Resonance Imaging, Bi-invariant means, Fréchet means, Statistics}, URL = {https://www-sop.inria.fr/asclepios/Publications/Arsigny/arsigny_phd.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://pastel.archives-ouvertes.fr/tel-00121162}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Clatz:these:2006, OPTADDRESS = {}, AUTHOR = {Olivier Clatz}, MONTH = {February}, OPTNOTE = {}, SCHOOL = {École des Mines de Paris}, TITLE = {Modèles biomécaniques et physio-pathologiques pour l'analyse d'images cérébrales}, TYPE = {Thèse de sciences}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Clatz/These_clatz.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/pastel-00003951/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Delingette:HDR:2006, OPTADDRESS = {}, AUTHOR = {Hervé Delingette}, MONTH = {March}, OPTNOTE = {}, SCHOOL = {Université Nice Sophia-Antipolis}, TITLE = {Modélisation de structures déformables}, TYPE = {Habilitation à diriger des recherches}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/hdr.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{dugas:these:2006, OPTADDRESS = {}, AUTHOR = {Guillaume Dugas-Phocion}, MONTH = {March}, OPTNOTE = {}, SCHOOL = {École des Mines de Paris}, TITLE = {Segmentation d'IRM Cérébrales Multi-Séquences et Application à la Sclérose en Plaques}, TYPE = {Thèse de sciences}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Misc/dugas-phd.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{malandain:hdr:2006, OPTADDRESS = {}, AUTHOR = {Grégoire Malandain}, MONTH = {March}, OPTNOTE = {}, SCHOOL = {Université Nice Sophia-Antipolis}, TITLE = {Les mesures de similarité pour le recalage des images médicales}, TYPE = {Habilitation à diriger des recherches}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/malandain-hdr-2006.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Pennec:HDR:2006, OPTADDRESS = {}, AUTHOR = {Xavier Pennec}, MONTH = {December}, OPTNOTE = {}, SCHOOL = {Université Nice Sophia-Antipolis}, TITLE = {Statistical Computing on Manifolds for Computational Anatomy}, TYPE = {Habilitation à diriger des recherches}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Tensors, regularization, PDE, geometry, Riemannian geometry, Registration, statistics, manifolds}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec_HDR.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://tel.archives-ouvertes.fr/tel-00633163}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{dauguet:thesis:2005, OPTADDRESS = {}, AUTHOR = {Julien Dauguet}, MONTH = {June}, OPTNOTE = {}, SCHOOL = {École Centrale de Paris}, TITLE = {L'imagerie post mortem tridimensionnelle cérébrale : constitution et apport pour l'analyse conjointe de données histologiques anatomo-fonctionnelles et la mise en correspondance avec l'imagerie in vivo}, OPTTYPE = {}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Dauguet/dauguet-phd-2005.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/tel-00339418/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{fouard:thesis:2005, OPTADDRESS = {}, AUTHOR = {Céline Fouard}, MONTH = {January}, OPTNOTE = {}, SCHOOL = {Université de Nice -- Sophia-Antipolis}, TITLE = {Extraction de paramètres morphométriques pour l'étude du réseau micro-vasculaire cérébral}, TYPE = {Thèse de sciences}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/dias/Theses/phd-124.pdf}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-1142.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/tel-00308884/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{moreau:thesis:2005, OPTADDRESS = {}, AUTHOR = {Valérie Moreau-Villéger}, OPTMONTH = {}, OPTNOTE = {}, SCHOOL = {Université de Nice Sophia-Antipolis}, TITLE = {Méthodes variationnelles et séquentielles pour l'étude de la contraction cardiaque}, TYPE = {Thèse de sciences}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Moreau/moreauThese2005.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{reyes:phd:2005, OPTADDRESS = {}, AUTHOR = {Mauricio A. Reyes}, MONTH = {December}, OPTNOTE = {}, SCHOOL = {Université de Nice Sophia-Antipolis}, TITLE = {Respiratory Motion Compensation in Emission Tomography}, TYPE = {Thèse de sciences}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Stefanescu:PhD:05, OPTADDRESS = {}, AUTHOR = {Radu Stefanescu}, MONTH = {March}, OPTNOTE = {}, SCHOOL = {Université de Nice -- Sophia-Antipolis}, TITLE = {Parallel nonlinear registration of medical images with a priori information on anatomy and pathology}, TYPE = {Thèse de sciences}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Stefanescu/thesis_stefanescu.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{blondel:thesis:2004, OPTADDRESS = {}, AUTHOR = {Christophe Blondel}, MONTH = {mars}, OPTNOTE = {}, SCHOOL = {Université de Nice Sophia Antipolis}, TITLE = {Modélisation 3D et 3D+t des artères coronaires à partir de séquences rotationnelles de projections rayons X}, TYPE = {Thèse de sciences}, YEAR = {2004}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {ftp://ftp.inria.fr/INRIA/publication/Theses/TU-0820.pdf}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0820.html}, POSTSCRIPT = {ftp://ftp.inria.fr/INRIA/publication/Theses/TU-0820.ps.gz}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/tel-00006067/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{bondiau:thesis:2004, OPTADDRESS = {}, AUTHOR = {Pierre-Yves Bondiau}, MONTH = {November}, OPTNOTE = {}, SCHOOL = {Université de Nice-Sophia Antipolis}, TITLE = {Mise en oeuvre et évaluation d'outils de fusion d'image en radiothérapie}, TYPE = {Thèse de sciences}, YEAR = {2004}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{flandin:thesis:2004, OPTADDRESS = {}, AUTHOR = {Guillaume Flandin}, MONTH = {April}, OPTNOTE = {}, SCHOOL = {Université de Nice-Sophia Antipolis}, TITLE = {Utilisation d'informations géométriques pour l'analyse statistique des données d'IRM fonctionnelle}, OPTTYPE = {}, YEAR = {2004}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/PhD_Flandin.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Nicolau:PhD:2004, OPTADDRESS = {}, AUTHOR = {Stéphane Nicolau}, MONTH = {November}, OPTNOTE = {}, SCHOOL = {Université de Nice-Sophia Antipolis}, TITLE = {Un système de réalité augmentée pour guider les opérations du foie en radiologie interventionnelle}, OPTTYPE = {}, YEAR = {2004}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/dias/Theses/phd-312.pdf}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-1136.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/tel-00000006/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Forest:Thesis:03, OPTADDRESS = {}, AUTHOR = {Clément Forest}, MONTH = {March}, OPTNOTE = {}, SCHOOL = {École Polytechnique}, TITLE = {Simulation de chirurgie par coelioscopie : contributions à l'étude de la découpe volumique, au retour d'effort et à la modélisation des vaisseaux sanguins}, OPTTYPE = {}, YEAR = {2003}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Forest/These_forest.pdf}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0776.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{granger:these:2003, OPTADDRESS = {}, AUTHOR = {Sébastien Granger}, MONTH = {April}, OPTNOTE = {}, SCHOOL = {Ecole des Mines de Paris}, TITLE = {Une approche statistique multi-échelle au recalage rigide de surfaces : Application à l'implantologie dentaire}, TYPE = {Thèse de sciences}, YEAR = {2003}, ABSTRACT = {The main subject of this work is the rigid registration of surfaces dedicated to VirtualScope, a per-operative guiding system designed for oral implants surgery. It is based on a purely statistical approach. We first show how to compute and maximize a likelihood, based on a model of the data noise, for the landmarks registration problem. This approach justifies the use of the ICP algorithm, and a new multi-scale variant named ICP/EM, which improves accuracy, speed and robustness. We introduce new noise models specifically designed for the registration of sampled and noised surfaces. We discuss about the theoretical prediction of the registration accuracy, and use it for guiding the data acquisition. We analyze in detail the experimental performances of the algorithm, and provide methods for setting optimally the parameters and ensuring the correctness of registration results. The resulting algorithm is perfectly suited to the VirtualScope application. The second part of this work deals with the more general problem of the statistical modelisation of sampled and noised curves and surfaces. Based on previous works on Saliency and Tensor Voting notions, it defines a vote field that represent the probability of a curve or surface element, knowing another element. We provide basic yet easy to implement examples of such a field, which can handle the surface shape, the sampling strategy and the measurement errors. We apply them successfully to the registration problem, and suggest to use them to derive Bayesian methods to virtually all other computer vision problems involving sampled and noised curves and surfaces. This work could lead to the design of a common statistical and multi-scale framework for these various methods.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {surface, registration, statistics, multi-scale, validation, ICP, EM, odontology, oriented points, saliency, tensor-voting, computer-guided surgery}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Granger_These.pdf}, OPTURL-PUBLISHER = {}, PS = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Granger_These.ps.gz}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Pitiot:PhD:2003, OPTADDRESS = {}, AUTHOR = {Alain Pitiot}, MONTH = {November}, OPTNOTE = {}, SCHOOL = {École des mines de Paris}, TITLE = {Segmentation automatique des structures cérébrales s'appuyant sur des connaissances explicites}, TYPE = {Thèse de sciences}, YEAR = {2003}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Pitiot/pitiot-thesis-2003.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/pastel-00001346/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Sermesant:Thesis:03, OPTADDRESS = {}, AUTHOR = {M. Sermesant}, MONTH = {May}, OPTNOTE = {}, SCHOOL = {Université de Nice Sophia Antipolis}, TITLE = {Modèle électromécanique du coeur pour l'analyse d'image et la simulation (Electromechanical Model of the Heart for Image Analysis and Simulation)}, OPTTYPE = {}, YEAR = {2003}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/theseMaximeSermesant.pdf}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0808.html}, POSTSCRIPT = {ftp://ftp.inria.fr/INRIA/publication/Theses/TU-0808.ps.gz}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{stoeckel:these:2003, OPTADDRESS = {}, AUTHOR = {Jonathan Stoeckel}, MONTH = {March}, OPTNOTE = {}, SCHOOL = {Ecole des Mines de Paris}, TITLE = {Outils de classification pour l'aide au diagnostic : application à la maladie d'Alzheimer et à d'autres pathologies cérébrales}, TYPE = {Thèse de sciences}, YEAR = {2003}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0773.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Cachier:These:02, OPTADDRESS = {}, AUTHOR = {Pascal Cachier}, MONTH = {January}, OPTNOTE = {}, SCHOOL = {École Centrale des Arts et Manufactures}, TITLE = {Recalage non rigide d'images médicales volumiques - contribution aux approches iconiques et géométriques}, TYPE = {Thèse de sciences}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, similarity measures, deformations}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0705.html}, POSTSCRIPT = {ftp://ftp.inria.fr/INRIA/publication/Theses/TU-0705.ps.gz}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Linguraru:PhD:02, OPTADDRESS = {}, AUTHOR = {M.G. Linguraru}, OPTMONTH = {}, OPTNOTE = {}, SCHOOL = {University of Oxford}, TITLE = {Feature Detection in Mammographic Image Analysis}, TYPE = {PhD Thesis}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Linguraru/Linguraru_PhD_2002.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Ourselin:These:02, OPTADDRESS = {}, AUTHOR = {Sébastien Ourselin}, MONTH = {January}, OPTNOTE = {}, SCHOOL = {Université de Nice Sophia-Antipolis}, TITLE = {Recalage d'images médicales par appariement de régions - Application à la construction d'atlas histologiques 3D}, TYPE = {Thèse de sciences}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, similarity measures, medical images, histology, autoradiography, robust estimation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Ourselin/These-ourselin.pdf}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0744.html}, POSTSCRIPT = {ftp://ftp.inria.fr/INRIA/publication/Theses/TU-0744.ps.gz}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Rey:These:02, OPTADDRESS = {}, AUTHOR = {David Rey}, MONTH = {October}, OPTNOTE = {}, SCHOOL = {Université de Nice Sophia-Antipolis}, TITLE = {Détection et quantification de processus évolutifs dans des images médicales tridimensionnelles : application à la sclérose en plaques}, TYPE = {Thèse de sciences}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {time analysis of images, magnetic resonance, multiple sclerosis, vector field, differential operators, statistical inference}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0748.html}, POSTSCRIPT = {ftp://ftp.inria.fr/INRIA/publication/Theses/TU-0748.ps.gz}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{migneco:thesis:2001, OPTADDRESS = {}, AUTHOR = {Octave Migneco}, MONTH = {December}, OPTNOTE = {}, SCHOOL = {Université de Nice Sophia-Antipolis}, TITLE = {Contribution à l'Analyse d'Images de la Perfusion Cérébrale : Recalage, Fusion et Traitement Statistique}, TYPE = {Thèse de sciences}, YEAR = {2001}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Picinbono:These:01, OPTADDRESS = {}, AUTHOR = {Guillaume Picinbono}, MONTH = {February}, OPTNOTE = {}, SCHOOL = {université de Nice Sophia-Antipolis}, TITLE = {Modèles géométriques et physiques pour la simulation d'interventions chirurgicales}, TYPE = {Thèse de sciences}, YEAR = {2001}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://hal.inria.fr/tel-00633965/document}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/tel-00633965/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Prima:These:01, OPTADDRESS = {}, AUTHOR = {Sylvain Prima}, MONTH = {mars}, OPTNOTE = {}, SCHOOL = {université Paris XI, Orsay}, TITLE = {Étude de la symétrie bilatérale en imagerie cérébrale volumique}, TYPE = {Thèse de sciences}, YEAR = {2001}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {statistics, medical images, symmetry}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-1051.html}, POSTSCRIPT = {ftp://ftp.inria.fr/INRIA/publication/Theses/TU-1051.ps.gz}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Roche:These:01, OPTADDRESS = {}, AUTHOR = {Alexis Roche}, MONTH = {February}, OPTNOTE = {}, SCHOOL = {Université de Nice Sophia-Antipolis}, TITLE = {Recalage d'images médicales par inférence statistique}, TYPE = {Thèse de sciences}, YEAR = {2001}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, similarity measures, medical images, statistics, optimization, correlation ratio, mutual information}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0665.html}, POSTSCRIPT = {ftp://ftp.inria.fr/INRIA/publication/Theses/TU-0665.ps.gz}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{phd-krissian, OPTADDRESS = {}, AUTHOR = {Karl Krissian}, MONTH = {janvier}, OPTNOTE = {}, SCHOOL = {université de Nice Sophia-Antipolis}, TITLE = {Traitement multi-échelle : Applications à l'imagerie médicale et à la détection tridimensionnelle de vaisseaux}, TYPE = {Thèse de sciences}, YEAR = {2000}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0616.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Gonzalez:PhD:99, OPTADDRESS = {}, AUTHOR = {González Ballester, M. A.}, OPTMONTH = {}, OPTNOTE = {}, SCHOOL = {University of Oxford}, TITLE = {Morphometric Analysis of Brain Structures in MRI}, OPTTYPE = {}, YEAR = {1999}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gonzalez/Gonzalez_PhD_1999.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{montagnat:these:19991, OPTADDRESS = {}, AUTHOR = {Johan Montagnat}, MONTH = {December}, OPTNOTE = {}, SCHOOL = {Université de Nice-Sophia Antipolis}, TITLE = {Modéles déformables pour la segmentation et la modélisation d'images médicales 3D et 4D}, TYPE = {Thèse de sciences}, YEAR = {1999}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {thesis, reconstruction}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/These-Montagnat.pdf}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0612.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Soler:these:1998, OPTADDRESS = {}, AUTHOR = {L. Soler}, MONTH = {November}, OPTNOTE = {}, SCHOOL = {université de Paris XI, Orsay}, TITLE = {Une nouvelle méthode de segmentation des structures anatomiques et pathologiques : application aux angioscanners 3D du foie pour la planification chirurgicale}, TYPE = {Thèse de sciences}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0566.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{cotin_these, OPTADDRESS = {}, AUTHOR = {S. Cotin}, MONTH = {November}, OPTNOTE = {}, SCHOOL = {Université de Nice Sophia-Antipolis}, TITLE = {Modèles anatomiques déformables en temps réel : Application à la simulation de chirurgie avec retour d'effort}, TYPE = {Thèse de sciences}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {thesis, simulation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/These.Cotin.pdf}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0595.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Declerck:these:1997, OPTADDRESS = {}, AUTHOR = {J. Declerck}, MONTH = {November}, OPTNOTE = {}, SCHOOL = {université Nice-Sophia Antipolis}, TITLE = {Étude de la dynamique cardiaque par analyse d'images tridimensionnelles}, TYPE = {Thèse de sciences}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/DECLERCK_THESE.pdf}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0495.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Fidrich:these:1997, OPTADDRESS = {}, AUTHOR = {Márta Fidrich}, OPTMONTH = {}, OPTNOTE = {}, SCHOOL = {université Paris XI, Orsay}, TITLE = {Analyse multiéchelle des invariants, Application à l'imagerie médicale volumique}, TYPE = {Thèse de sciences}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0497.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{thirion-habilitation, ADDRESS = {France}, AUTHOR = {J.-P. Thirion}, MONTH = {June}, OPTNOTE = {}, SCHOOL = {université de Nice, Sophia-Antipolis}, TITLE = {Mise en Correspondance Automatique d'Images Médicales Tri-Dimensionnelles}, TYPE = {Thèse d'Habilitation à Diriger des Recherches}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, deformations}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{bondiau:these:medecine:1996, OPTADDRESS = {}, AUTHOR = {Pierre-Yves Bondiau}, MONTH = {octobre}, OPTNOTE = {}, SCHOOL = {université de Nice Sophia-Antipolis}, TITLE = {L'oeil virtuel}, TYPE = {thèse de médecine}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{vidal:these:1996, OPTADDRESS = {}, AUTHOR = {S. Fernández-Vidal}, MONTH = {septembre}, OPTNOTE = {}, SCHOOL = {université de Nice Sophia-Antipolis}, TITLE = {Squelettes et outils de topologie discrète : application à l'imagerie médicale 3D}, TYPE = {Thèse de sciences}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0486.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Pennec:Phd:96, ADDRESS = {Palaiseau (France)}, AUTHOR = {Xavier Pennec}, MONTH = {December}, OPTNOTE = {}, SCHOOL = {Ecole Polytechnique}, TITLE = {L'incertitude dans les problèmes de reconnaissance et de recalage -- Applications en imagerie médicale et biologie moléculaire}, TYPE = {Thèse de sciences (PhD thesis)}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, statistics, validation, geometry, Riemannian geometry, medical images, protein structure}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec_PhD.pdf}, URL-PUBLISHER = {http://www.inria.fr/sophia/personnel/Xavier.Pennec/These.html}, POSTSCRIPT = {ftp://ftp.inria.fr/INRIA/publication/Theses/TU-0456}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{bardinet:these:1995, OPTADDRESS = {}, AUTHOR = {E. Bardinet}, MONTH = {December}, OPTNOTE = {}, SCHOOL = {université Paris IX Dauphine}, TITLE = {Modèles déformables contraints - applications à l'imagerie cardiaque}, TYPE = {Thèse de sciences}, YEAR = {1995}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0444.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{cohen_these, OPTADDRESS = {}, AUTHOR = {L. D. Cohen}, MONTH = {June}, OPTNOTE = {}, SCHOOL = {Ceremade-Université Paris IX Dauphine}, TITLE = {Méthodes Variationnelles en traitement d'images}, TYPE = {Habilitation à diriger des recherches}, YEAR = {1995}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Feldmar:these:1995, OPTADDRESS = {}, AUTHOR = {J. Feldmar}, MONTH = {December}, OPTNOTE = {}, SCHOOL = {École Polytechnique}, TITLE = {Recalage rigide, non-rigide et projectif d'images médicales tridimensionnelles}, TYPE = {Thèse de sciences}, YEAR = {1995}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, deformations}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0461.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{gourdon_these, OPTADDRESS = {}, AUTHOR = {A. Gourdon}, MONTH = {January}, OPTNOTE = {}, SCHOOL = {Université Paris XI-Orsay}, TITLE = {Applications de la Géométrie Différentielle à l'Imagerie Médicale Multidimensionelle}, TYPE = {Thèse de sciences}, YEAR = {1995}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{subsol:these:1995, OPTADDRESS = {}, AUTHOR = {Gérard Subsol}, MONTH = {December}, OPTNOTE = {}, SCHOOL = {École Centrale de Paris}, TITLE = {Construction automatique d'atlas anatomiques à partir d'images médicales tridimensionnelles : applications à un atlas du crâne et du cerveau}, TYPE = {Thèse de sciences}, YEAR = {1995}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0379.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{benayoun_these, OPTADDRESS = {}, AUTHOR = {S. Benayoun}, MONTH = {December}, OPTNOTE = {}, SCHOOL = {Université Paris IX Dauphine}, TITLE = {Calcul local du mouvement, applications à l'imagerie médicale multidimensionnelle}, TYPE = {Thèse de sciences}, YEAR = {1994}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{delingette_these, OPTADDRESS = {}, AUTHOR = {H. Delingette}, MONTH = {July}, OPTNOTE = {}, SCHOOL = {Ecole Centrale de Paris}, TITLE = {Modélisation, Déformation et Reconnaissance d'objets tridimensionnels a l'aide de maillages simplexes}, TYPE = {Thèse de sciences}, YEAR = {1994}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {thesis, reconstruction, recognition}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/These-Delingette.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{NastarPhD, OPTADDRESS = {}, AUTHOR = {Chahab Nastar}, MONTH = {Juillet}, OPTNOTE = {}, SCHOOL = {Ecole Nationale des Ponts et Chaussées}, TITLE = {Modèles physiques déformables et modes vibratoires pour l'analyse du mouvement non-rigide dans les images multidimensionnelles}, TYPE = {Thèse de sciences}, YEAR = {1994}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {motion tracking, deformations}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{GueziecAndre:These93, OPTADDRESS = {}, AUTHOR = {André Guéziec}, MONTH = {Février}, OPTNOTE = {}, SCHOOL = {Université de Paris XI ORSAY}, TITLE = {Reconnaissance Automatique de Surfaces et Courbes Gauches. Application à l'Analyse d'Images Volumiques}, TYPE = {Thèse de sciences}, YEAR = {1993}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0224.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{monga93, OPTADDRESS = {}, AUTHOR = {O. Monga}, MONTH = {Janvier}, OPTNOTE = {}, SCHOOL = {Université de Paris XI (Orsay)}, TITLE = {Des images à la géométrie des objets}, TYPE = {Mémoire d'habilitation à diriger des Recherches}, YEAR = {1993}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{Isaac:PhD, OPTADDRESS = {}, AUTHOR = {I. Cohen}, MONTH = {Juin}, OPTNOTE = {}, SCHOOL = {Université Paris-IX Dauphine}, TITLE = {Modèles déformables 2-D et 3-D: Application à la segmentation dimages médicales}, TYPE = {Thèse de sciences}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0182.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @PHDTHESIS{malandain92b, OPTADDRESS = {}, AUTHOR = {G. Malandain}, MONTH = {Septembre}, OPTNOTE = {}, SCHOOL = {Ecole Centrale de Paris}, TITLE = {Filtrage, topologie et mise en correspondance d'images médicales multidimensionnelles}, TYPE = {Thèse de sciences}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.inria.fr/rrrt/tu-0199.html}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{berenbaum:hal-04081046, AUTHOR = {Arnaud Berenbaum and Hervé Delingette and Aurélien Maire and Cécile Poret and Claire Hassen-Khodja and Stéphane Bréant and Christel Daniel and Patricia Martel and Lamiae Grimaldi and Marie Frank and Emmanuel Durand and Florent Besson}, JOURNAL = {Applied Sciences}, MONTH = {May}, OPTNOTE = {}, NUMBER = {9}, PAGES = {5281}, PUBLISHER = {Multidisciplinary digital publishing institute (MDPI)}, TITLE = {Performance of AI-Based Automated Classifications of Whole-Body FDG PET in Clinical Practice: The CLARITI Project}, VOLUME = {13}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.3390/app13095281}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {FDG PET, artificial intelligence, deep learning, convolutional neural network}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-04081046}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{brillatsavarin:hal-04162794, AUTHOR = {Nina Brillat-Savarin and Carine Wu and Laurène Aupin and Camille Thoumin and Dimitri Hamzaoui and Raphaële Renard-Penna}, JOURNAL = {European Journal of Radiology}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {110974}, PUBLISHER = {Elsevier}, TITLE = {3.0 T prostate MRI: Visual assessment of 2D and 3D T2-weighted imaging sequences using PI-QUAL score}, VOLUME = {166}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1016/j.ejrad.2023.110974}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-04162794}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cedilnik:hal-04255556, AUTHOR = {Nicolas Cedilnik and Mihaela Pop and Josselin Duchateau and Frédéric Sacher and Pierre Jaïs and Hubert Cochet and Maxime Sermesant}, JOURNAL = {JACC: Clinical Electrophysiology}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {Efficient Patient-Specific Simulations of Ventricular Tachycardia Based on Computed Tomography-Defined Wall Thickness Heterogeneity}, OPTVOLUME = {}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1016/j.jacep.2023.08.008}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac modeling, Electrophysiology modeling, CT, Ventricular tachycardia, Medical simulation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-04255556/file/cedilnik-jaccep-2023.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-04255556}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{clairon:hal-03335826, AUTHOR = {Quentin Clairon and Chloé Pasin and Irene Balelli and Rodolphe Thiébaut and Mélanie Prague}, JOURNAL = {Computational Statistics}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Springer Verlag}, TITLE = {Parameter estimation in nonlinear mixed effect models based on ordinary differential equations: An optimal control approach}, OPTVOLUME = {}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Dynamic population models, Ordinary differential equations, Optimal control theory, Mechanistic models, Nonlinear mixed effects models, Clinical trial analysis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03335826v2/file/Manuscript_Estimation_NLMEODE_via_OCA_CompStat%20%281%29.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03335826}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{dadoun:hal-03773082, AUTHOR = {Hind Dadoun and Hervé Delingette and Anne-Laure Rousseau and de Kerviler, Eric and Nicholas Ayache}, JOURNAL = {Journal of Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {034502}, PUBLISHER = {SPIE Digital Library}, TITLE = {Deep Clustering for Abdominal Organ Classification in US imaging}, VOLUME = {10}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1117/1.JMI.10.3.034502}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {ultrasound imaging, representation learning, deep clustering, semi-supervised learning}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03773082v3/file/soumission_jmi_dadoun_vf.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03773082}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{guigui:hal-03766900, AUTHOR = {Nicolas Guigui and Nina Miolane and Xavier Pennec}, JOURNAL = {Foundations and Trends in Machine Learning}, MONTH = {February}, OPTNOTE = {}, NUMBER = {3}, PAGES = {329-493}, PUBLISHER = {Now Publishers}, TITLE = {Introduction to Riemannian Geometry and Geometric Statistics: from basic theory to implementation with Geomstats}, VOLUME = {16}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1561/2200000098}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Riemannian Geometry, Geometric Statistics, Python Library}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03766900v2/file/main-now.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03766900}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{hamzaoui:hal-04208018, AUTHOR = {Dimitri Hamzaoui and Sarah Montagne and Raphaële Renard-Penna and Nicholas Ayache and Hervé Delingette}, JOURNAL = {Journal of Machine Learning for Biomedical Imaging}, MONTH = {September}, OPTNOTE = {}, NUMBER = {UNSURE 2022 Special Issue}, PAGES = {361-389}, PUBLISHER = {Melba editors}, TITLE = {Morphologically-Aware Consensus Computation via Heuristics-based IterATive Optimization (MACCHIatO)}, VOLUME = {2}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.59275/j.melba.2023-219c}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Consensus, Distance, Heuristic, Optimization, STAPLE}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-04208018/file/MOJITO_MELBA.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-04208018}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{harms:hal-02972385, AUTHOR = {Philipp Harms and Peter W. Michor and Xavier Pennec and Stefan Sommer}, JOURNAL = {Differential Geometry and its Applications}, MONTH = {October}, NOTE = {29 pages, 1 figure}, OPTNUMBER = {}, PAGES = {102029}, PUBLISHER = {Elsevier}, TITLE = {Geometry of Sample Spaces}, VOLUME = {90}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1016/j.difgeo.2023.102029}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02972385}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{moliere:hal-04185065, AUTHOR = {Sébastien Molière and Dimitri Hamzaoui and Anna Luzurier and Benjamin Granger and Sarah Montagne and Alexandre Allera and Malek Ezziane and Raphaële Quint and Mehdi Kalai and Nicholas Ayache and Hervé Delingette and Raphaële Renard-Penna}, JOURNAL = {Diagnostic and Interventional Imaging}, MONTH = {August}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {Reference standard for the evaluation of automatic segmentation algorithms: Quantification of inter observer variability of manual delineation of prostate contour on MRI}, OPTVOLUME = {}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1016/j.diii.2023.08.001}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = { Artificial intelligence Inter-reader variability Magnetic resonance imaging Prostate Segmentation}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-04185065}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{soulier:hal-04227434, AUTHOR = {Théodore Soulier and Olivier Colliot and Nicholas Ayache and Benjamin Rohaut}, JOURNAL = {Anaesthesia Critical Care & Pain Medicine}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {101301}, PUBLISHER = {Elsevier Masson}, TITLE = {How will tomorrow's algorithms fuse multimodal data? The example of the neuroprognosis in Intensive Care}, OPTVOLUME = {}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1016/j.accpm.2023.101301}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Disorders of Consciousness, Neurological Prognosis, Multimodal Data, Artificial Intelligence, Disorders of Consciousness Neurological Prognosis Multimodal Data Artificial Intelligence}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.sorbonne-universite.fr/hal-04227434/file/manuscript4hal.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.sorbonne-universite.fr/hal-04227434}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{thanwerdas:hal-03647321, AUTHOR = {Yann Thanwerdas and Xavier Pennec}, JOURNAL = {SIAM Journal on Matrix Analysis and Applications}, MONTH = {September}, OPTNOTE = {}, NUMBER = {3}, PAGES = {1447-1476}, PUBLISHER = {Society for Industrial and Applied Mathematics}, TITLE = {Bures-Wasserstein minimizing geodesics between covariance matrices of different ranks}, VOLUME = {44}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1137/22M149168X}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Covariance matrices, PSD matrices, Bures-Wasserstein, Orbit space, Geodesics, Injection domain, 15B48, 15A63, 53B20, 53C22, 58D17, 53-08, 53A04, 54E50, 58A35}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03647321/file/main.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03647321}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{thanwerdas:hal-03338601, AUTHOR = {Yann Thanwerdas and Xavier Pennec}, JOURNAL = {Linear Algebra and its Applications}, MONTH = {March}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {163-201}, PUBLISHER = {Elsevier}, TITLE = {O(n)-invariant Riemannian metrics on SPD matrices}, VOLUME = {661}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1016/j.laa.2022.12.009}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {53B20, Symmetric Positive Definite matrices, Riemannian geometry, Invariance under orthogonal transformations, Families of metrics, Log-Euclidean metric, Affine-invariant metric, Bures-Wasserstein metric, Kernel metrics}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03338601v3/file/LAA_YT_XP_O_n_invariant_metrics_v3%20%282%29.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03338601}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{tourniaire:hal-03972289, AUTHOR = {Paul Tourniaire and Marius Ilie and Paul Hofman and Nicholas Ayache and Hervé Delingette}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {102763}, PUBLISHER = {Elsevier}, TITLE = {MS-CLAM: Mixed Supervision for the classification and localization of tumors in Whole Slide Images}, VOLUME = {85}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2023.102763}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Digital Pathology, Mixed Supervision, Deep Learning, Camelyon16, DigestPath2019}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03972289/file/article_MedIA_hal_version.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03972289}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{wang:hal-04042921, AUTHOR = {Zihao Wang and Zhifei Xu and Jiayi He and Herve Delingette and Jun Fan}, JOURNAL = {IEEE Transactions on Signal and Power Integrity}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {13-22}, TITLE = {Long Short-Term Memory Neural Equalizer}, VOLUME = {2}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1109/TSIPI.2023.3242855}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-04042921}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{lorenzi:hal-04239814, OPTADDRESS = {}, AUTHOR = {Marco Lorenzi and Marie Deprez and Irene Balelli and Ana L Aguila and Andre Altmann}, BOOKTITLE = {Machine Learning for Brain Disorders}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Olivier Colliot}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {573 - 597}, PUBLISHER = {Springer}, SERIES = {Neuromethods}, TITLE = {Integration of Multimodal Data}, OPTTYPE = {}, VOLUME = {NM197}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1007/978-1-0716-3195-9_19}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Multivariate analysis, Latent variable models, Multimodal imaging, -Omics, Imaginggenetics, Partial least squares, Canonical correlation analysis, Variational autoencoders, Sparsity, Interpretability}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-04239814/file/Chapter19.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-04239814}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{ly:hal-04212068, OPTADDRESS = {}, AUTHOR = {Buntheng Ly and Mihaela Pop and Hubert Cochet and Nicolas Duchateau and Declan O'regan and Maxime Sermesant}, BOOKTITLE = {AI and Big Data in Cardiology : A Practical Guide}, OPTCHAPTER = {}, OPTEDITION = {}, OPTEDITOR = {}, MONTH = {May}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {105-133}, PUBLISHER = {Springer International Publishing}, OPTSERIES = {}, TITLE = {Outcome Prediction}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1007/978-3-031-05071-8_6}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-04212068}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{abinader:hal-03514292, AUTHOR = {Abi Nader, Clément and Federica Ribaldi and Giovanni B Frisoni and Valentina Garibotto and Philippe Robert and Nicholas Ayache and Marco Lorenzi}, JOURNAL = {Neurobiology of Aging}, MONTH = {May}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {73-83}, PUBLISHER = {Elsevier}, TITLE = {SimulAD: A dynamical model for personalized simulation and disease staging in Alzheimer's disease}, VOLUME = {113}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1016/j.neurobiolaging.2021.12.015}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Alzheimer's disease, Disease progression models, Clinical trials, Biomarkers}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03514292/file/nboa_2021_final.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03514292}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{albors:hal-03863600, AUTHOR = {Carlos Albors and Èric Lluch and Juan Francisco Gomez and Nicolas Cedilnik and Konstantinos Mountris and Tommaso Mansi and Svyatoslav Khamzin and Arsenii Dokuchaev and Olga Solovyova and Esther Pueyo and Maxime Sermesant and Rafael Sebastian and Hernán Morales and Oscar Camara}, JOURNAL = {Applied Sciences}, MONTH = {July}, OPTNOTE = {}, NUMBER = {13}, PAGES = {6438}, PUBLISHER = {Multidisciplinary digital publishing institute (MDPI)}, TITLE = {Meshless Electrophysiological Modeling of Cardiac Resynchronization Therapy-Benchmark Analysis with Finite-Element Methods in Experimental Data}, VOLUME = {12}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.3390/app12136438}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03863600}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{audelan:hal-03594219, AUTHOR = {Benoît Audelan and Dimitri Hamzaoui and Sarah Montagne and Raphaële Renard-Penna and Hervé Delingette}, JOURNAL = {Medical Image Analysis}, MONTH = {May}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {102398}, PUBLISHER = {Elsevier}, TITLE = {Robust Bayesian fusion of continuous segmentation maps}, VOLUME = {78}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2022.102398}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Image segmentation, Data fusion, Consensus, Mixture}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03594219/file/manuscript.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03594219}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache:hal-03689197, AUTHOR = {Nicholas Ayache}, JOURNAL = {Pour la Science. Dossier}, MONTH = {May}, NOTE = {The article is available at the following address: https://www.pourlascience.fr/sd/medecine/la-fee-ia-au-chevet-des-malades-23684.php}, NUMBER = {hors série 115}, PAGES = {18-23}, PUBLISHER = {Belin}, SERIES = {Hors série ''Jusqu'où ira l'intelligence artificielle ?''}, TITLE = {La fée IA au chevet des malades}, OPTVOLUME = {}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03689197}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bacoyannis:hal-03739242, AUTHOR = {Tania Marina Bacoyannis and Buntheng Ly and H Cochet and Maxime Sermesant}, JOURNAL = {EP-Europace}, MONTH = {May}, OPTNOTE = {}, NUMBER = {Supplement_1}, OPTPAGES = {}, PUBLISHER = {Oxford University Press (OUP)}, TITLE = {Deep learning formulation of ECGI evaluated on clinical data}, VOLUME = {24}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1093/europace/euac053.566}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Electrocardiography, Inverse Problem, Deep learning, Computational Modelling, Generative Model, Data Processing, Clinical Evaluation}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03739242}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{balelli:hal-03644819, AUTHOR = {Irene Balelli and Santiago Silva and Marco Lorenzi}, JOURNAL = {Journal of Machine Learning for Biomedical Imaging}, MONTH = {April}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Melba editors}, TITLE = {A Differentially Private Probabilistic Framework for Modeling the Variability Across Federated Datasets of Heterogeneous Multi-View Observations}, OPTVOLUME = {}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03644819}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{benn:hal-03556752, AUTHOR = {James Benn and Stephen Marsland}, JOURNAL = {Annals of Global Analysis and Geometry}, MONTH = {April}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {47-70}, PUBLISHER = {Springer Verlag}, TITLE = {The Measurement and Analysis of Shapes}, VOLUME = {62}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1007/s10455-022-09839-z}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Shape, Currents, Hodge theory, Sobolev diffeomorphisms, Euler Equations, Probability densities}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03556752/file/Revision3F.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03556752}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{blanken:hal-03942375, AUTHOR = {Nathan Blanken and Jelmer Wolterink and Herve Delingette and Christoph Brune and Michel Versluis and Guillaume Lajoinie}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {September}, OPTNOTE = {}, NUMBER = {9}, PAGES = {2532-2542}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Super-Resolved Microbubble Localization in Single-Channel Ultrasound RF Signals Using Deep Learning}, VOLUME = {41}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2022.3166443}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03942375}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{dadoun:hal-03583297, AUTHOR = {Hind Dadoun and Anne-Laure Rousseau and de Kerviler, Eric and Jean Michel Correas and Anne-Marie Tissier and Fanny Joujou and Sylvain Bodard and Kemel Khezzane and de Margerie-Mellon, Constance and Hervé Delingette and Nicholas Ayache}, JOURNAL = {Radiology: Artificial Intelligence}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, OPTPAGES = {}, PUBLISHER = {RSNA}, TITLE = {Detection, Localization, and Characterization of Focal Liver Lesions in Abdominal US with Deep Learning}, VOLUME = {4}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1148/ryai.210110}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03583297}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{guigui:hal-02894783, AUTHOR = {Nicolas Guigui and Xavier Pennec}, JOURNAL = {Foundations of Computational Mathematics}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {757-790}, PUBLISHER = {Springer Verlag}, TITLE = {Numerical Accuracy of Ladder Schemes for Parallel Transport on Manifolds}, VOLUME = {22}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1007/s10208-021-09515-x}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02894783v3/file/Guigui_et_al-2021-Foundations_of_Computational_Mathematics.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02894783}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{hamzaoui:hal-03888145, AUTHOR = {Dimitri Hamzaoui and Sarah Montagne and Benjamin Granger and Alexandre Allera and Malek Ezziane and Anna Luzurier and Raphaëlle Quint and Mehdi Kalai and Nicholas Ayache and Hervé Delingette and Raphaële Renard-Penna}, JOURNAL = {European Radiology}, OPTMONTH = {}, NOTE = {Correction about the name of the author Raphaële Renard-Penna}, NUMBER = {7}, PAGES = {5035--5035}, PUBLISHER = {Springer Verlag}, TITLE = {Correction to: Prostate Volume Prediction on MRI: Tools, Accuracy and Variability}, VOLUME = {32}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1007/s00330-022-08688-5}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.sorbonne-universite.fr/hal-03888145}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{hamzaoui:hal-03409262, AUTHOR = {Dimitri Hamzaoui and Sarah Montagne and Benjamin Granger and Alexandre Allera and Malek Ezziane and Anna Luzurier and Raphaële Quint and Mehdi Kalai and Nicholas Ayache and Hervé Delingette and Raphaele Renard-Penna}, JOURNAL = {European Radiology}, MONTH = {February}, NOTE = {The original publication is available at www.springerlink.com: https://link.springer.com/article/10.1007/s00330-022-08554-4}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Springer Verlag}, TITLE = {Prostate volume prediction on MRI: tools, accuracy and variability}, OPTVOLUME = {}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1007/s00330-022-08554-4}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Prostate, Magnetic Resonance Imaging, Volume, PSA density, Segmentation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03409262/file/EURA-D-21-03295_R1-16-47.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03409262}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{hamzaoui:hal-03587074, AUTHOR = {Dimitri Hamzaoui and Sarah Montagne and Raphaele Renard-Penna and Nicholas Ayache and Hervé Delingette}, JOURNAL = {Journal of Medical Imaging}, MONTH = {March}, OPTNOTE = {}, NUMBER = {2}, PAGES = {024001}, PUBLISHER = {SPIE Digital Library}, TITLE = {Automatic Zonal Segmentation of the Prostate from 2D and 3D T2-weighted MRI and Evaluation for Clinical Use}, VOLUME = {9}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1117/1.JMI.9.2.024001}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Prostate, Segmentation, Deep Learning, Lesion, Magnetic Resonance Imaging, Inter-rater Variability}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03587074v2/file/JMI-21261R_online.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03587074}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ilie:hal-03621585, AUTHOR = {Marius Ilie and Jonathan Benzaquen and Paul Tourniaire and Simon Heeke and Nicholas Ayache and Hervé Delingette and Elodie Long-Mira and Sandra Lassalle and Marame Hamila and Julien Fayada and Josiane Otto and Charlotte Cohen and Gomez Caro, Abel and Jean Philippe Berthet and Charles Hugo Marquette and Véronique Hofman and Christophe Bontoux and Paul Hofman}, JOURNAL = {Cancers}, MONTH = {March}, OPTNOTE = {}, NUMBER = {7}, PAGES = {1740}, PUBLISHER = {MDPI}, TITLE = {Deep learning facilitates distinguishing histologic subtypes of pulmonary neuroendocrine tumors on digital whole-slide images}, VOLUME = {14}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.3390/cancers14071740}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {lung, neuroendocrine carcinoma, deep learning, CNN, HALO-AI}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03621585}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lareyre:hal-03846183, AUTHOR = {Fabien Lareyre and Christian-Alexander Behrendt and Arindam Chaudhuri and Nicholas Ayache and Juliette Raffort and Hervé Delingette}, JOURNAL = {Angiology}, MONTH = {September}, OPTNOTE = {}, NUMBER = {8}, PAGES = {697-700}, PUBLISHER = {SAGE Publications}, TITLE = {Big Data and Artificial Intelligence in Vascular Surgery: Time for Multidisciplinary Cross-Border Collaboration}, VOLUME = {73}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1177/00033197221113146}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03846183}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{margeta:hal-03846584, AUTHOR = {Jan Margeta and Raabid Hussain and López Diez, Paula and Anika Morgenstern and Thomas Demarcy and Zihao Wang and Dan Gnansia and Martinez Manzanera, Octavio and Clair Vandersteen and Hervé Delingette and Andreas Buechner and Thomas Lenarz and François Patou and Nicolas Guevara}, JOURNAL = {Journal of Clinical Medicine}, MONTH = {November}, OPTNOTE = {}, NUMBER = {22}, PAGES = {6640}, PUBLISHER = {MDPI}, TITLE = {A Web-Based Automated Image Processing Research Platform for Cochlear Implantation-Related Studies}, VOLUME = {11}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.3390/jcm11226640}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {cochlear implant, image analysis, computed tomography, machine learning, deep learning, image segmentation, 3D model, tonotopic mapping, visualization}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03846584/file/jcm-11-06640.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03846584}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{merle:hal-03934424, AUTHOR = {Mathilde Merle and Florent Collot and Julien Castelneau and Pauline Migerditichan and Mehdi Juhoor and Buntheng Ly and Valery Ozenne and Bruno Quesson and Nejib Zemzemi and Yves Coudière and Pierre Jaïs and Hubert Cochet and Maxime Sermesant}, JOURNAL = {Applied Sciences}, MONTH = {June}, OPTNOTE = {}, NUMBER = {12}, PAGES = {6145}, PUBLISHER = {Multidisciplinary digital publishing institute (MDPI)}, TITLE = {MUSIC: Cardiac Imaging, Modelling and Visualisation Software for Diagnosis and Therapy}, VOLUME = {12}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.3390/app12126145}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {cardiac imaging, multimodal, electrophysiology, deep learning, biophysical modelling, inverse problems}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03934424}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{myers:hal-03903044, AUTHOR = {Adele Myers and Saiteja Utpala and Shubham Talbar and Sophia Sanborn and Christian Shewmake and Claire Donnat and Johan Mathe and Umberto Lupo and Rishi Sonthalia and Xinyue Cui and Tom Szwagier and Arthur Pignet and Andri Bergsson and Soren Hauberg and Dmitriy Nielsen and Stefan Sommer and David Klindt and Erik Hermansen and Melvin Vaupel and Benjamin Dunn and Jeffrey Xiong and Noga Aharony and Itsik Pe'Er and Felix Ambellan and Martin Hanik and Esfandiar Nava-Yazdani and von Tycowicz, Christoph and Nina Miolane}, JOURNAL = {Proceedings of Machine Learning Research}, MONTH = {November}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {269-276}, PUBLISHER = {PMLR}, SERIES = {Topological, Algebraic and Geometric Learning Workshops 2022}, TITLE = {ICLR 2022 Challenge for Computational Geometry & Topology: Design and Results}, VOLUME = {196}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.5281/zenodo.6554616}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03903044/file/myers22a%20%281%29.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03903044}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{nunezgarcia:hal-03909887, AUTHOR = {M Nuñez-Garcia and S Finsterbach and Buntheng Ly and Marco Lorenzi and H Cochet and Maxime Sermesant}, JOURNAL = {EP-Europace}, MONTH = {May}, OPTNOTE = {}, NUMBER = {Supplement_1}, OPTPAGES = {}, PUBLISHER = {Oxford University Press (OUP)}, TITLE = {Long-term remodelling and arrhythmogenicity after myocardial infarction using a novel image-based estimator: the Scar Maturation Score}, VOLUME = {24}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1093/europace/euac053.042}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03909887}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{rodriguezpadilla:hal-03902767, AUTHOR = {Jairo Rodrìguez-Padilla and Argyrios Petras and Julie Magat and Jason Bayer and Yann Bihan-Poudec and El Hamrani, Dounia and Girish Ramlugun and Aurel Neic and Christoph Augustin and Fanny Vaillant and Marion Constantin and David Benoist and Line Pourtau and Virginie Dubes and Julien Rogier and Louis Labrousse and Olivier Bernus and Bruno Quesson and Michel Haïssaguerre and Matthias Gsell and Gernot Plank and Valéry Ozenne and Edward Vigmond}, JOURNAL = {AJP - Heart and Circulatory Physiology}, MONTH = {June}, OPTNOTE = {}, NUMBER = {6}, PAGES = {H936-H952}, PUBLISHER = {American Physiological Society}, TITLE = {Impact of intraventricular septal fiber orientation on cardiac electromechanical function}, VOLUME = {322}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1152/ajpheart.00050.2022}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {diffusion tensor imaging, electromechanical models, fiber orientation, intraventricular septum, normal structural discontinuities}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03902767}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{schmidtmengin:hal-03836922, AUTHOR = {Schmidt- Mengin, Marius and Théodore Soulier and Mariem Hamzaoui and Arya Yazdan-Panah and Benedetta Bodini and Nicholas Ayache and Bruno Stankoff and Olivier Colliot}, JOURNAL = {Frontiers in Neuroscience}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {100405}, PUBLISHER = {Frontiers}, TITLE = {Online hard example mining vs. fixed oversampling strategy for segmentation of new multiple sclerosis lesions from longitudinal FLAIR MRI}, VOLUME = {16}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.3389/fnins.2022.1004050}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {New lesions segmentation, Deep learning, Hard example mining, Multiple sclerosis, MRI}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03836922/file/fnins-16-1004050.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03836922}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{thanwerdas:hal-03414887, AUTHOR = {Yann Thanwerdas and Xavier Pennec}, JOURNAL = {Differential Geometry and its Applications}, MONTH = {April}, OPTNOTE = {}, NUMBER = {101867}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {The geometry of mixed-Euclidean metrics on symmetric positive definite matrices}, VOLUME = {81}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1016/j.difgeo.2022.101867}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Symmetric Positive Definite matrices, Riemannian geometry, information geometry, families of metrics, kernel metrics, alpha-Procrustes, mixed-power-Euclidean, mixed-Euclidean, (u, v)-divergence, ($\alpha$, $\beta$)-divergence, 15B48, 53B12, 15A63, 53B20}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03414887/file/main.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03414887}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{thanwerdas:hal-03527072, AUTHOR = {Yann Thanwerdas and Xavier Pennec}, JOURNAL = {SIAM Journal on Matrix Analysis and Applications}, MONTH = {December}, OPTNOTE = {}, NUMBER = {4}, PAGES = {1851-1872}, PUBLISHER = {Society for Industrial and Applied Mathematics}, TITLE = {Theoretically and computationally convenient geometries on full-rank correlation matrices}, VOLUME = {43}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1137/22M1471729}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {SPD matrices, Correlation matrices, Lie group, Lie group actions, Quotient-affine metric, Lie-Cholesky metrics, Poly-hyperbolic-Cholesky metrics, Euclidean-Cholesky metrics, Log-Euclidean-Cholesky metrics}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03527072v2/file/SIMAX_YT_XP_Convenient_geometries_correlation_HAL.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03527072}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{wu:hal-03923997, AUTHOR = {Carine Wu and Sarah Montagne and Dimitri Hamzaoui and Nicholas Ayache and Hervé Delingette and Raphaële Renard-Penna}, JOURNAL = {Insights into Imaging}, MONTH = {December}, OPTNOTE = {}, NUMBER = {1}, PAGES = {202}, PUBLISHER = {Springer}, TITLE = {Automatic segmentation of prostate zonal anatomy on MRI: a systematic review of the literature}, VOLUME = {13}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1186/s13244-022-01340-2}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Artificial intelligence, Deep learning, Magnetic resonance imaging, Prostate cancer}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03923997}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{guigui:hal-03684811, OPTADDRESS = {}, AUTHOR = {Nicolas Guigui and Xavier Pennec}, BOOKTITLE = {Geometry and Statistics}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Frank Nielsen and Arni S.R. Srinivasa Rao and C.R. Rao}, MONTH = {May}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {285-326}, PUBLISHER = {Elsevier}, SERIES = {Handbook of Statistics}, TITLE = {Parallel transport, a central tool in geometric statistics for computational anatomy: Application to cardiac motion modeling}, OPTTYPE = {}, VOLUME = {46}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1016/bs.host.2022.03.006}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Parallel transport, longitudinal studies, mean trajectory, cardiac motion analysis, Schild's ladder, pole ladder, Riemannian manifolds}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03684811/file/H0S_ParallelTransport.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03684811}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{abinader:hal-02968724, AUTHOR = {Abi Nader, Clément and Nicholas Ayache and Giovanni B Frisoni and Philippe Robert and Marco Lorenzi}, JOURNAL = {Brain Communications}, MONTH = {February}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Oxford University Press on behalf of the Guarantors of Brain}, TITLE = {Simulating the outcome of amyloid treatments in Alzheimer's Disease from multi-modal imaging and clinical data}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1093/braincomms/fcab091}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Alzheimer's Disease, Clinical trials, Disease progression, Amyloid hypothesis, Mental State Examination, FAQ = Functional Assessment Questionnaire, RAVLT = Rey Auditory Verbal Learning Test, CDRSB = Clinical Dementia Rating Scale Sum of Boxes}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02968724v4/file/revised_manuscript.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02968724}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bacoyannis:hal-03268015, AUTHOR = {Tania Bacoyannis and Buntheng Ly and Nicolas Cedilnik and Hubert Cochet and Maxime Sermesant}, JOURNAL = {EP-Europace}, MONTH = {March}, OPTNOTE = {}, NUMBER = {Supplement_1}, PAGES = {i55-i62}, PUBLISHER = {Oxford University Press (OUP)}, TITLE = {Deep Learning Formulation of ECGI Integrating Image & Signal Information with Data-driven Regularisation}, VOLUME = {23}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1093/europace/euaa391}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Electrocardiographic Imaging, Inverse Problem, Deep learning, Computational Modelling, Generative Model}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03268015/file/europace_2021.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03268015}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{banus:hal-03231513, AUTHOR = {Jaume Banus and Marco Lorenzi and Oscar Camara and Maxime Sermesant}, JOURNAL = {Medical Image Analysis}, MONTH = {August}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {Biophysics-based statistical learning: Application to heart and brain interactions}, VOLUME = {72}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2021.102089}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Lumped model, Cardiovascular modelling, Personalisation, White matter damage, Atrial fibrillation, Heart-Brain interaction}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03231513/file/main.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03231513}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{blancdurand:inserm-03006852, AUTHOR = {Paul Blanc-Durand and Simon Jégou and Salim Kanoun and Alina Berriolo-Riedinger and Caroline M Bodet-Milin and Françoise Kraeber-Bodéré and Thomas Carlier and Le Gouill, Steven and René-Olivier Casasnovas and Michel Meignan and Emmanuel Itti}, JOURNAL = {European Journal of Nuclear Medicine and Molecular Imaging}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1362-1370}, PUBLISHER = {Springer Verlag (Germany)}, SERIES = {48}, TITLE = {Fully automatic segmentation of diffuse large B cell lymphoma lesions on 3D FDG-PET/CT for total metabolic tumour volume prediction using a convolutional neural network}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/s00259-020-05080-7}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Convolutional neural network, Deep learning, Lymphoma, Positron emission tomography, Segmentation, Total metabolic tumour volume, U-net}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inserm.hal.science/inserm-03006852/file/Blanc-Durand2020Eq13.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inserm.hal.science/inserm-03006852}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{casamitjana:hal-03374516, AUTHOR = {Adrià Casamitjana and Marco Lorenzi and Sebastiano Ferraris and Loïc Peter and Marc Modat and Allison Stevens and Bruce Fischl and Tom Vercauteren and Juan Eugenio Iglesias}, JOURNAL = {Medical Image Analysis}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2021.102265}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {nonlinear registration, 3D reconstruction, linear programming, ex vivo MRI, histology}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03374516/file/2104.14873.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03374516}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{deprez:hal-03477486, AUTHOR = {Marie Deprez and Julien Moreira and Maxime Sermesant and Marco Lorenzi}, JOURNAL = {Frontiers in Molecular Medicine}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Frontiers Media}, TITLE = {Decoding genetic markers of multiple phenotypic layers through biologically constrained Genome-to-Phenome Bayesian Sparse Regression}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.3389/fmmed.2022.830956}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Bayesian, Variational Dropout, Genome, Phenome, Regression, Biological constraint}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03477486/file/G2PSR_hal.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03477486}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{duboc:hal-03477359, AUTHOR = {Véronique Duboc and David Pratella and Marco Milanesio and John Boudjarane and Stéphane Descombes and Véronique Paquis-Flucklinger and Silvia Bottini}, JOURNAL = {Briefings in Bioinformatics}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Oxford University Press (OUP)}, TITLE = {NiPTUNE: an automated pipeline for noninvasive prenatal testing in an accurate, integrative and flexible framework}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1093/bib/bbab380}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03477359}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{duchateau:hal-03538132, AUTHOR = {Nicolas Duchateau and Pamela Moceri and Maxime Sermesant}, JOURNAL = {Journal of The American Society of Echocardiography}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {201-203}, PUBLISHER = {Elsevier}, TITLE = {Direction-dependent decomposition of 3D right ventricular motion: beware of approximations}, VOLUME = {34}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1016/j.echo.2020.08.023}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03538132/file/Duchateau_JASE_2020.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03538132}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{garbarino:hal-03374531, AUTHOR = {Sara Garbarino and Marco Lorenzi}, JOURNAL = {NeuroImage}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {117980}, PUBLISHER = {Elsevier}, TITLE = {Investigating hypotheses of neurodegeneration by learning dynamical systems of protein propagation in the brain}, VOLUME = {235}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2021.117980}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Neurodegeneration, Causal model, Dynamical systems, Protein propagation, Gaussian process, Brain connectivity}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03374531/file/S1053811921002573.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03374531}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{jia:hal-03650289, AUTHOR = {Shuman Jia and Hubert Nivet and Josquin Harrison and Xavier Pennec and Claudia Camaioni and Pierre Jaïs and Hubert Cochet and Maxime Sermesant}, JOURNAL = {Heart Rhythm O2}, MONTH = {December}, OPTNOTE = {}, NUMBER = {6}, PAGES = {622-632}, PUBLISHER = {Elsevier}, TITLE = {Left atrial shape is independent predictor of arrhythmia recurrence after catheter ablation for atrial fibrillation: A shape statistics study}, VOLUME = {2}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1016/j.hroo.2021.10.013}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Atrial fibrillation, Catheter ablation, CT, Left atrial shape, Recurrence, Statistical shape modeling}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03650289/file/HRO2Paper.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03650289}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{krebs:hal-03126419, AUTHOR = {Julian Krebs and Hervé Delingette and Nicholas Ayache and Tommaso Mansi}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {February}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Learning a Generative Motion Model from Image Sequences based on a Latent Motion Matrix}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2021.3056531}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {motion model, deformable registration, conditional variational autoencoder, gaussian process, latent variable model, motion interpolation, motion simulation, tracking}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03126419/file/krebs_final.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03126419}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{krebs:hal-03444134, AUTHOR = {Julian Krebs and Tommaso Mansi and Hervé Delingette and Bin Lou and Joao Lima and Susumu Tao and Luisa Ciuffo and Sanaz Norgard and Barbara Butcher and Wei Lee and Ela Chamera and Timm-Michael Dickfeld and Michael Stillabower and Joseph Marine and Robert Weiss and Gordon Tomaselli and Henry Halperin and Katherine Wu and Hiroshi Ashikaga}, JOURNAL = {Scientific Reports}, MONTH = {November}, OPTNOTE = {}, NUMBER = {1}, PAGES = {22683}, PUBLISHER = {Nature Publishing Group}, TITLE = {CinE caRdiac magneTic resonAnce to predIct veNTricular arrhYthmia (CERTAINTY)}, VOLUME = {11}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1038/s41598-021-02111-7}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac device therapy, Ventricular fibrillation, Ventricular tachycardia}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03444134}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lazaridis:hal-03374545, AUTHOR = {Georgios Lazaridis and Marco Lorenzi and Jibran Mohamed-Noriega and Soledad Aguilar-Munoa and Katsuyoshi Suzuki and Hiroki Nomoto and Sebastien Ourselin and David Garway-Heath and David Crabb and Catey Bunce and Francesca Amalfitano and Nitin Anand and Augusto Azuara-Blanco and Rupert Bourne and David Broadway and Ian Cunliffe and Jeremy Diamond and Scott Fraser and Tuan Ho and Keith Martin and Andrew Mcnaught and Anil Negi and Ameet Shah and Paul Spry and Edward White and Richard Wormald and Wen Xing and Thierry Zeyen}, JOURNAL = {Ophthalmology Glaucoma}, MONTH = {May}, OPTNOTE = {}, NUMBER = {3}, PAGES = {295-304}, PUBLISHER = {Elsevier}, TITLE = {OCT Signal Enhancement with Deep Learning}, VOLUME = {4}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1016/j.ogla.2020.10.008}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Deep learning, Glaucoma, Image analysis, OCT, Visual fields}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03374545}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lazaridis:hal-03374539, AUTHOR = {Georgios Lazaridis and Marco Lorenzi and Sebastien Ourselin and David Garway-Heath}, JOURNAL = {Medical Image Analysis}, MONTH = {February}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {101906}, PUBLISHER = {Elsevier}, TITLE = {Improving statistical power of glaucoma clinical trials using an ensemble of cyclical generative adversarial networks}, VOLUME = {68}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2020.101906}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Optical coherence tomography, Deep learning, Perceptual loss, GAN, Label fusion, Statistical power, Clinical trials, Glaucoma}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03374539}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lebrigant:hal-02671122, AUTHOR = {Le Brigant, Alice and Nicolas Guigui and Sana Rebbah and Stéphane Puechmorel}, JOURNAL = {IFAC-PapersOnLine}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {Classifying histograms of medical data using information geometry of beta distributions}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1016/j.ifacol.2021.06.110}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {histogram analysis, clustering, medical imaging, Information geometry, classification}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02671122v2/file/info-geom-beta.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02671122}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{moceri:hal-03544765, AUTHOR = {Pamela Moceri and Nicolas Duchateau and Delphine Baudouy and Fabien Squara and Sok Sithikun Bun and Emile Ferrari and Maxime Sermesant}, JOURNAL = {European Heart Journal - Cardiovascular Imaging}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Oxford UP}, TITLE = {Additional prognostic value of echocardiographic follow-up in pulmonary hypertension - role of 3D right ventricular area strain}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1093/ehjci/jeab240}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Pulmonary hypertension, right ventricular function, 3D echocardiography, myocardial deformation imaging}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03544765/file/Moceri_EHJCI_2021.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03544765}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{moceri:hal-03544761, AUTHOR = {Pamela Moceri and Nicolas Duchateau and Benjamin Sartre and Delphine Baudouy and Fabien Squara and Maxime Sermesant and Emile Ferrari}, JOURNAL = {Echocardiography}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Wiley}, TITLE = {Value of 3D right ventricular function over 2D assessment in acute pulmonary embolism}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1111/echo.15167}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {pulmonary embolism, right ventricular function, 3D echocardiography, speckle-tracking}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03544761/file/Moceri_ECHO_2021.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03544761}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{montagne:hal-03221227, AUTHOR = {Sarah Montagne and Dimitri Hamzaoui and Alexandre Allera and Malek Ezziane and Anna Luzurier and Raphaële Quint and Mehdi Kalai and Nicholas Ayache and Hervé Delingette and Renard Penna, Raphaele}, JOURNAL = {Insights into Imaging}, MONTH = {June}, OPTNOTE = {}, NUMBER = {1}, OPTPAGES = {}, PUBLISHER = {Springer}, TITLE = {Challenge of prostate MRI segmentation on T2-weighted images: inter-observer variability and impact of prostate morphology}, VOLUME = {12}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1186/s13244-021-01010-9}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Prostate, MRI, Segmentation, Zones, Atlas}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03221227/file/s13244-021-01010-9.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03221227}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{nir:hal-03241929, AUTHOR = {Talia M Nir and Jean-Paul Fouche and Jintanat Ananworanich and Beau M Ances and Jasmina Boban and Bruce J Brew and Joga R Chaganti and Linda Chang and Christopher R K Ching and Lucette A Cysique and Thomas Ernst and Joshua Faskowitz and Vikash Gupta and Jaroslaw Harezlak and Jodi M Heaps-Woodruff and Charles H Hinkin and Jacqueline Hoare and John A Joska and Kalpana J Kallianpur and Taylor Kuhn and Hei y Lam and Meng Law and Christine Lebrun-Frénay and Andrew J Levine and Lydiane Mondot and Beau K Nakamoto and Bradford A Navia and Xavier Pennec and Eric C Porges and Lauren E Salminen and Cecilia M Shikuma and Wesley Surento and April D Thames and Victor Valcour and Matteo Vassallo and Adam J Woods and Paul M Thompson and Ronald A Cohen and Robert Paul and Dan J Stein and Neda Jahanshad}, JOURNAL = {JAMA Network Open}, MONTH = {January}, OPTNOTE = {}, NUMBER = {1}, PAGES = {e2031190}, PUBLISHER = {American Medical Association}, TITLE = {Association of Immunosuppression and Viral Load With Subcortical Brain Volume in an International Sample of People Living With HIV}, VOLUME = {4}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1001/jamanetworkopen.2020.31190}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03241929/file/nir_2021_oi_200975_1610549581.70404%282%29.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03241929}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{sermesant:hal-03171141, AUTHOR = {Maxime Sermesant and Hervé Delingette and Hubert Cochet and Pierre Jaïs and Nicholas Ayache}, JOURNAL = {Nature Reviews Cardiology}, MONTH = {March}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {600-609}, PUBLISHER = {Nature Publishing Group}, TITLE = {Applications of artificial intelligence in cardiovascular imaging}, VOLUME = {18}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1038/s41569-021-00527-2}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiology, Machine learning, Medical imaging}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03171141}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{stolyarchuk:hal-03042382, AUTHOR = {Maxim Stolyarchuk and Julie Ledoux and Elodie Maignant and Alain Trouvé and Luba Tchertanov}, JOURNAL = {International Journal of Molecular Sciences}, MONTH = {January}, OPTNOTE = {}, NUMBER = {2}, PAGES = {802}, PUBLISHER = {MDPI}, TITLE = {Identification of the Primary Factors Determining the Specificity of the human VKORC1 Recognition by Thioredoxin-fold Proteins}, VOLUME = {22}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.3390/ijms22020802}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Trx-fold proteins, protein folding, dynamics, molecular recognition, thioldisulphide exchange, protein-protein interactions, PDI-hVKORC1 complex, 3D modelling, molecular dynamics simulation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03042382v2/file/Tchertanov_ijms-2021.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03042382}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{wang:hal-03372777, AUTHOR = {Zihao Wang and Thomas Demarcy and Clair Vandersteen and Dan Gnansia and Charles Raffaelli and Nicolas Guevara and Hervé Delingette}, JOURNAL = {Medical Image Analysis}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {102268}, PUBLISHER = {Elsevier}, TITLE = {Bayesian Logistic Shape Model Inference: application to cochlear image segmentation}, VOLUME = {75}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2021.102268}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Bayesian Inference, Image Segmentation, Shape Modeling}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03372777/file/2105.02045.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03372777}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{wang:hal-03351225, AUTHOR = {Zihao Wang and Clair Vandersteen and Thomas Demarcy and Dan Gnansia and Charles Raffaelli and Nicolas Guevara and Hervé Delingette}, JOURNAL = {Computerized Medical Imaging and Graphics}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {101990}, PUBLISHER = {Elsevier}, TITLE = {Inner-ear Augmented Metal Artifact Reduction with Simulation-based 3D Generative Adversarial Networks}, VOLUME = {93}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1016/j.compmedimag.2021.101990}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Artifact Reduction, Deep Learning, GAN}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03351225/file/Margan_Clean_Latex%20%281%29.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03351225}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{xu:hal-03219748, AUTHOR = {Zhifei Xu and Zihao Wang and Yin Sun and Chulsoon Hwang and Hervé Delingette and Jun Fan}, JOURNAL = {IEEE Transactions on Microwave Theory and Techniques}, MONTH = {June}, NOTE = {Corresponding authors: Zihao Wang; Chulsoon Hwang.}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Jitter Aware Economic PDN Optimization with a Genetic Algorithm}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1109/TMTT.2021.3087188}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {PDN, Jitter, PSIJ, Decoupling capacitor, Genetic algorithm, Power integrity}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03219748/file/IEEE_Journal_Submission_JItter_aware_PDN_study%20%283%29.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03219748}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{zhou:hal-03375000, AUTHOR = {Kevin Zhou and Hoang Ngan Le and Khoa Luu and van Nguyen, Hien and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {102193}, PUBLISHER = {Elsevier}, TITLE = {Deep reinforcement learning in medical imaging: A literature review}, VOLUME = {73}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2021.102193}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03375000}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{ayache:hal-03374760, OPTADDRESS = {}, AUTHOR = {Nicholas Ayache}, BOOKTITLE = {Digital Anatomy - Applications of Virtual, Mixed and Augmented Reality}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Jean-François Uhl and Joaquim Jorge and Daniel Simoes Lopes and Pedro F Campos}, MONTH = {May}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Springer Nature}, SERIES = {Human--Computer Interaction Series}, TITLE = {Foreword}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-61905-3}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03374760/file/Foreword%20-%20Digital%20Anatomy.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03374760}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{pennec:hal-02925156, OPTADDRESS = {}, AUTHOR = {Xavier Pennec}, BOOKTITLE = {Digital Anatomy - Applications of Virtual, Mixed and Augmented Reality}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Jean-François Uhl and Joaquim Jorge and Daniel Simoes Lopes and Pedro F Campos}, MONTH = {May}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Springer Nature}, SERIES = {Human--Computer Interaction Series}, TITLE = {Statistical analysis of organs' shapes and deformations: the Riemannian and the affine settings in computational anatomy}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-61905-3_9}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02925156/file/2020_CompAnat_Pennec.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02925156}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{audelan:hal-03044140, AUTHOR = {Benoît Audelan and Hervé Delingette}, JOURNAL = {Medical Image Analysis}, MONTH = {November}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {101895}, PUBLISHER = {Elsevier}, TITLE = {Unsupervised quality control of segmentations based on a smoothness and intensity probabilistic model}, VOLUME = {68}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2020.101895}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Unsupervised quality control, Image segmentation, Bayesian learning, Unsupervised quality control}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03044140/file/revised_manuscript.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03044140}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{blancdurand:hal-03138538, AUTHOR = {Paul Blanc-Durand and Jean-Baptiste. Schiratti and Kathryn Schutte and Paul Jehanno and Paul Herent and Frédéric Pigneur and Olivier Lucidarme and Y. Benaceur and Alexandre Sadate and Alain Luciani and Olivier Ernst and A. Rouchaud and Maud Creze and Alex Dallongeville and Nathan Banaste and Mehdi Cadi and Imad Bousaid and Nathalie Lassau and Simon Jégou}, JOURNAL = {Diagnostic and Interventional Imaging}, MONTH = {December}, OPTNOTE = {}, NUMBER = {12}, PAGES = {789-794}, PUBLISHER = {Elsevier}, TITLE = {Abdominal musculature segmentation and surface prediction from CT using deep learning for sarcopenia assessment}, VOLUME = {101}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1016/j.diii.2020.04.011}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Convolutional neural networks (CNN), Deep learning, Muscular body bass, Sarcopenia, Tomography, X-ray computed}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03138538/file/S2211568420301224.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03138538}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{chevallier:hal-02568245, AUTHOR = {Emmanuel Chevallier and Nicolas Guigui}, JOURNAL = {Entropy}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {432}, PUBLISHER = {MDPI}, TITLE = {A Bi-Invariant Statistical Model Parametrized by Mean and Covariance on Rigid Motions}, VOLUME = {22}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.3390/e22040432}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {moment-matching estimator, Euclidean groups, density estimation, wrapped distributions, rigid motions, sampling, differential of the exponential}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02568245/file/SEnHAL_Chevallier_Guigui.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02568245}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{duncan:hal-02395429, AUTHOR = {James S Duncan and Michel F Insana and Nicholas Ayache}, JOURNAL = {Proceedings of the IEEE}, MONTH = {January}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {3-10}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Biomedical Imaging and Analysis In the Age of Big Data and Deep Learning}, VOLUME = {14}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02395429v2/file/Proceedings_of_IEEE_Editors_Overview_Article-10.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02395429}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{heeke:hal-02972033, AUTHOR = {Simon Heeke and Jonathan Benzaquen and Véronique Hofman and Elodie Long-Mira and Virginie Lespinet and Olivier Bordone and Charles-Hugo Marquette and Hervé Delingette and Marius Ilié and Paul Hofman}, JOURNAL = {Journal of Thoracic Oncology}, MONTH = {September}, OPTNOTE = {}, NUMBER = {9}, PAGES = {1535-1540}, PUBLISHER = {Lippincott, Williams & Wilkins}, TITLE = {Comparison of Three Sequencing Panels Used for the Assessment of Tumor Mutational Burden in NSCLC Reveals Low Comparability}, VOLUME = {15}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1016/j.jtho.2020.05.013}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02972033}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{miolane:hal-02536154, AUTHOR = {Nina Miolane and Nicolas Guigui and Le Brigant, Alice and Johan Mathe and Benjamin Hou and Yann Thanwerdas and Stefan Heyder and Olivier Peltre and Niklas Koep and Hadi Zaatiti and Hatem Hajri and Yann Cabanes and Thomas Gerald and Paul Chauchat and Christian Shewmake and Daniel Brooks and Bernhard Kainz and Claire Donnat and Susan Holmes and Xavier Pennec}, JOURNAL = {Journal of Machine Learning Research}, MONTH = {December}, OPTNOTE = {}, NUMBER = {223}, PAGES = {1-9}, PUBLISHER = {Microtome Publishing}, TITLE = {Geomstats: A Python Package for Riemannian Geometry in Machine Learning}, VOLUME = {21}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {differential geometry, Riemannian geometry, statistics, machine learning, manifold}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02536154v2/file/19-027.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02536154}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{mlynarski:hal-02181181, AUTHOR = {Pawel Mlynarski and Hervé Delingette and Hamza A Alghamdi and Pierre-Yves Bondiau and Nicholas Ayache}, JOURNAL = {Journal of Medical Imaging}, MONTH = {February}, OPTNOTE = {}, NUMBER = {1}, PAGES = {1--21}, PUBLISHER = {SPIE Digital Library}, TITLE = {Anatomically consistent CNN-based segmentation of organs-at-risk in cranial radiotherapy}, VOLUME = {7}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1117/1.JMI.7.1.014502}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {segmentation, organs at risk, Convolutional Neural Networks, radiotherapy, MRI}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02181181v2/file/article.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02181181}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{moceri:hal-02913107, AUTHOR = {Pamela Moceri and Nicolas Duchateau and Stephane Gillon and Lolita Jaunay and Delphine Baudouy and Fabien Squara and Emile Ferrari and Maxime Sermesant}, JOURNAL = {European Heart Journal - Cardiovascular Imaging}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Oxford UP}, TITLE = {3D right ventricular shape and strain in congenital heart disease patients with right ventricular chronic volume loading}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02913107/file/Moceri_EHJCI_2020.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02913107}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{orlhac:hal-02945627, AUTHOR = {Fanny Orlhac and Augustin Lecler and Julien Savatovski and Jessica Goya-Outi and Christophe Nioche and Frédérique Charbonneau and Nicholas Ayache and Frédérique Frouin and Loïc Duron and Irène Buvat}, JOURNAL = {European Radiology}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Springer Verlag}, TITLE = {How can we combat multicenter variability in MR radiomics? Validation of a correction procedure}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02945627/file/Manuscrit_HAL.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02945627}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{sivera:hal-02166357, AUTHOR = {Raphaël Sivera and Nicolas Capet and Valeria Manera and Roxane Fabre and Marco Lorenzi and Hervé Delingette and Xavier Pennec and Nicholas Ayache and Philippe Robert}, JOURNAL = {Neurobiology of Aging}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {50-59}, PUBLISHER = {Elsevier}, TITLE = {Voxel-based assessments of treatment effects on longitudinal brain changes in the Multidomain Alzheimer Preventive Trial cohort}, VOLUME = {94}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1016/j.neurobiolaging.2019.11.020}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Multidomain intervention, Clinical trial, Subjective memory complaint, Deformation-based morphometry}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02166357v2/file/paper-mapt-final.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02166357}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{wei:hal-02922534, AUTHOR = {Wen Wei and Emilie Poirion and Benedetta Bodini and Matteo Tonietto and Stanley Durrleman and Olivier Colliot and Bruno Stankoff and Nicholas Ayache}, JOURNAL = {NeuroImage}, MONTH = {December}, OPTNOTE = {}, NUMBER = {117308}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {Predicting PET-derived Myelin Content from Multisequence MRI for Individual Longitudinal Analysis in Multiple Sclerosis}, VOLUME = {223C}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2020.117308}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Conditional GANs, Attention Mechanism, PET Imaging, Multisequence MRI, Demyelination and Remyelination, Deep Learning, Multiple Sclerosis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02922534/file/elsarticle-template.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02922534}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{zheng:hal-02043380, AUTHOR = {Qiao Zheng and Hervé Delingette and Kenneth Fung and Steffen E Petersen and Nicholas Ayache}, JOURNAL = {Frontiers in Cardiovascular Medicine}, MONTH = {November}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {164}, PUBLISHER = {Frontiers Media}, TITLE = {Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs}, VOLUME = {7}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.3389/fcvm.2020.539788}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cluster analysis, Gaussian mixture model, Cine MRI, Cardiac pathology, Feature extraction, UK Biobank, Cardiac motion}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02043380/file/1902.05811.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02043380}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{ayache:hal-02522507, OPTADDRESS = {}, AUTHOR = {Nicholas Ayache}, BOOKTITLE = {Healthcare and Artificial Intelligence}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Nordlinger B. and Villani C. and Rus D.}, MONTH = {March}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {89-91}, PUBLISHER = {Springer International Publishing}, OPTSERIES = {}, TITLE = {Medical Imaging in the Age of Artificial Intelligence}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-32161-1_13}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02522507/file/Ayache-Nordlinger2020-AuthorVersion.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02522507}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{miolane:hal-02342155, OPTADDRESS = {}, AUTHOR = {Nina Miolane and Loïc Devilliers and Xavier Pennec}, BOOKTITLE = {Riemannian Geometric Statistics in Medical Image Analysis}, OPTCHAPTER = {}, OPTEDITION = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {Chap. 9}, PAGES = {343-376}, PUBLISHER = {Elsevier}, OPTSERIES = {}, TITLE = {Bias on estimation in quotient space and correction methods: Applications to statistics on organ shapes}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1016/B978-0-12-814725-2.00017-0}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02342155/file/chapterQuotient.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02342155}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{pennec:hal-02560938, OPTADDRESS = {}, AUTHOR = {Xavier Pennec}, BOOKTITLE = {Handbook of Variational Methods for Nonlinear Geometric Data}, OPTCHAPTER = {}, OPTEDITION = {}, OPTEDITOR = {}, MONTH = {April}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {339-359}, PUBLISHER = {Springer International Publishing}, OPTSERIES = {}, TITLE = {Advances in Geometric Statistics for Manifold Dimension Reduction}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-31351-7_11}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02560938/file/XP_GeomStats_ManifoldReductionPCA.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02560938}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{pennec:hal-02341958, OPTADDRESS = {}, AUTHOR = {Xavier Pennec}, BOOKTITLE = {Riemannian Geometric Statistics in Medical Image Analysis}, OPTCHAPTER = {}, OPTEDITION = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {Chap. 3}, PAGES = {75-134}, PUBLISHER = {Elsevier}, OPTSERIES = {}, TITLE = {Manifold-valued image processing with SPD matrices}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1016/B978-0-12-814725-2.00010-8}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02341958/file/chapter3.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02341958}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{pennec:hal-02342137, OPTADDRESS = {}, AUTHOR = {Xavier Pennec and Marco Lorenzi}, BOOKTITLE = {Riemannian Geometric Statistics in Medical Image Analysis}, OPTCHAPTER = {}, OPTEDITION = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {Chap. 5}, PAGES = {169-229}, PUBLISHER = {Elsevier}, OPTSERIES = {}, TITLE = {Beyond Riemannian geometry: The affine connection setting for transformation groups}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1016/B978-0-12-814725-2.00012-1}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02342137/file/chapter5.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02342137}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{sommer:hal-02341901, OPTADDRESS = {}, AUTHOR = {Stefan Sommer and Tom Fletcher and Xavier Pennec}, BOOKTITLE = {Riemannian Geometric Statistics in Medical Image Analysis}, OPTCHAPTER = {}, OPTEDITION = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {Chap. 1}, PAGES = {3-37}, PUBLISHER = {Elsevier}, OPTSERIES = {}, TITLE = {Introduction to differential and Riemannian geometry}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1016/b978-0-12-814725-2.00008-x}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02341901/file/chapter1.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02341901}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{abinader:hal-02051843, AUTHOR = {Abi Nader, Clement and Nicholas Ayache and Philippe Robert and Marco Lorenzi}, JOURNAL = {NeuroImage}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {Monotonic Gaussian Process for Spatio-Temporal Disease Progression Modeling in Brain Imaging Data}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Stochastic variational inference, Clinical trials, Bayesian modeling, Alzheimer's disease, Disease progression modeling, Gaussian Process}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02051843v3/file/revised_manuscript.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02051843}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{antelmi:hal-02395747, AUTHOR = {Luigi Antelmi and Nicholas Ayache and Philippe Robert and Marco Lorenzi}, JOURNAL = {Proceedings of Machine Learning Research}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {97}, PAGES = {302--311}, PUBLISHER = {PMLR}, SERIES = {Proceedings of ICML 2019}, TITLE = {Sparse Multi-Channel Variational Autoencoder for the Joint Analysis of Heterogeneous Data}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02395747/file/antelmi19.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02395747}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache:hal-02404520, AUTHOR = {Nicholas Ayache and Sara Colantonio}, JOURNAL = {ERCIM News}, MONTH = {July}, OPTNOTE = {}, NUMBER = {118}, PAGES = {4-5}, PUBLISHER = {ERCIM}, TITLE = {The Digital Health Revolution - Introduction to the Special Theme}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02404520}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{berge:hal-01835074, AUTHOR = {Laurent Bergé and Charles Bouveyron and Marco Corneli and Pierre Latouche}, JOURNAL = {Computational Statistics and Data Analysis}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {247-270}, PUBLISHER = {Elsevier}, TITLE = {The Latent Topic Block Model for the Co-Clustering of Textual Interaction Data}, VOLUME = {137}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01835074/file/LTBMpaper.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01835074}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{callegari:hal-03477646, AUTHOR = {Christian Callegari and Marco Milanesio and Pietro Michiardi}, JOURNAL = {International Journal of Communication Systems}, MONTH = {April}, OPTNOTE = {}, NUMBER = {6}, PAGES = {e3908}, PUBLISHER = {Wiley}, TITLE = {Network level perspective in web sessions troubleshooting}, VOLUME = {32}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1002/dac.3908}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03477646}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{compes:hal-02076599, AUTHOR = {Paloma Compes and Emeline Tabouret and Amandine Etcheverry and Carole Colin and Romain Appay and Nicolas Cordier and Jean Mosser and Olivier Chinot and Hervé Delingette and Nadine Girard and Henry Dufour and Philippe Metellus and Dominique Figarella-Branger}, JOURNAL = {Journal of Neuro-Oncology}, MONTH = {May}, OPTNOTE = {}, NUMBER = {3}, PAGES = {511-520}, PUBLISHER = {Springer Verlag}, TITLE = {Neuro-radiological characteristics of adult diffuse grade II and III insular gliomas classified according to WHO 2016}, VOLUME = {142}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1007/s11060-019-03122-1}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Molecular, Glioma, Neuro-radiology, Insula, Perfusion}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://univ-rennes.hal.science/hal-02076599}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cury:inserm-01958916, AUTHOR = {Claire Cury and Stanley Durrleman and David Cash and Marco Lorenzi and Jennifer M Nicholas and Martina Bocchetta and van Swieten, John C. and Barbara Borroni and Daniela Galimberti and Mario Masellis and Maria Carmela Tartaglia and James Rowe and Caroline Graff and Fabrizio Tagliavini and Giovanni B. Frisoni and Robert Laforce and Elizabeth Finger and de Mendonça, Alexandre and Sandro Sorbi and Sébastien Ourselin and Jonathan Rohrer and Marc Modat and Christin Andersson and Silvana Archetti and Andrea Arighi and Luisa Benussi and Sandra Black and Maura Cosseddu and Marie Fallstrm and Carlos G. Ferreira and Chiara Fenoglio and Nick Fox and Morris Freedman and Giorgio Fumagalli and Stefano Gazzina and Robert Ghidoni and Marina Grisoli and Vesna Jelic and Lize Jiskoot and Ron Keren and Gemma Lombardi and Carolina Maruta and Lieke Meeter and van Minkelen, Rick and Benedetta Nacmias and Linn Ijerstedt and Alessandro Padovani and Jessica Panman and Michela Pievani and Cristina Polito and Enrico Premi and Sara Prioni and Rosa Rademakers and Veronica Redaelli and Ekaterina Rogaeva and Giacomina Rossi and Martin Rossor and Elio Scarpini and David Tang-Wai and Hakan Thonberg and Pietro Tiraboschi and Ana Verdelho and Jason Warren}, JOURNAL = {NeuroImage}, MONTH = {March}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {282-290}, PUBLISHER = {Elsevier}, TITLE = {Spatiotemporal analysis for detection of pre-symptomatic shape changes in neurodegenerative diseases: Initial application to the GENFI cohort}, VOLUME = {188}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2018.11.063}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Clustering, Thalamus, Spatiotemporal geodesic regression, Parallel transport, Computational anatomy, Shape analysis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inserm.hal.science/inserm-01958916/file/Spatio_temporal_analysis_GENFI_lastSub_black.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inserm.hal.science/inserm-01958916}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{demarcy:hal-02270604, AUTHOR = {Thomas Demarcy and Isabelle Pélisson and Dan Gnansia and Hervé Delingette and Nicholas Ayache and Charles Raffaelli and Clair Vandersteen and Nicolas Guevara}, JOURNAL = {Cahiers de l'audition}, MONTH = {July}, OPTNOTE = {}, NUMBER = {4}, PAGES = {36-40}, PUBLISHER = {Elsevier}, TITLE = {Un modèle de reconstruction tridimensionnelle de la cochlée au service de l'implantation cochléaire}, VOLUME = {32}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02270604}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{doste:hal-02128531, AUTHOR = {Rubén Doste and David Soto-iglesias and Gabriel Bernardino and Alejandro Alcaine and Rafael Sebastian and Sophie Giffard-Roisin and Maxime Sermesant and Antonio Berruezo and Damian Sanchez-quintana and Oscar Camara}, JOURNAL = {International Journal for Numerical Methods in Biomedical Engineering}, MONTH = {March}, OPTNOTE = {}, NUMBER = {4}, OPTPAGES = {}, PUBLISHER = {John Wiley and Sons}, SERIES = {International Journal for Numerical Methods in Biomedical Engineering}, TITLE = {A rule-based method to model myocardial fiber orientation in cardiac biventricular geometries with outflow tracts}, VOLUME = {35}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1002/cnm.3185}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Rule-based method, Fiber orientation, Outflow tract, Septum, Electrophysiological simulations, Outflow tract ventricular arrhythmia}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02128531}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{heeke:hal-02381188, AUTHOR = {Simon Heeke and Jonathan Benzaquen and Elodie Long-Mira and Benoît Audelan and Virginie Lespinet and Olivier Bordone and Salomé Lalvée and Katia Zahaf and Michel Poudenx and Olivier Humbert and Henri Montaudié and Pierre-Michel Dugourd and Madleen Chassang and Thierry Passeron and Hervé Delingette and Charles-Hugo Marquette and Véronique Hofman and Albrecht Stenzinger and Marius Ilié and Paul Hofman}, JOURNAL = {Cancers}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {MDPI}, TITLE = {In-House Implementation of Tumor Mutational Burden Testing to Predict Durable Clinical Benefit in Non-Small Cell Lung Cancer and Melanoma Patients}, VOLUME = {11}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.3390/cancers11091271}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {tumor mutational burden, FoundationOne assay, Oncomine TML assay, lung cancer, melanoma, immunotherapy}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02381188/file/cancers-11-01271-v2%281%29.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02381188}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{heeke:hal-02446712, AUTHOR = {Simon Heeke and Hervé Delingette and Youta Fanjat and Elodie Long-Mira and Sandra Lassalle and Véronique Hofman and Jonathan Benzaquen and Charles-Hugo Marquette and Paul Hofman and Marius Ilié}, JOURNAL = {Annales de Pathologie}, MONTH = {April}, OPTNOTE = {}, NUMBER = {2}, PAGES = {130-136}, PUBLISHER = {Elsevier Masson}, TITLE = {La pathologie cancéreuse pulmonaire à l'heure de l'intelligence artificielle : entre espoir, désespoir et perspectives}, VOLUME = {39}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1016/j.annpat.2019.01.003}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Pathology, Histology, Lung cancer, Artificial intelligence, Convolutional neural networks, Deep learning, Pathologie Apprentissage profond, Histologie, Cancer broncho-pulmonair, Intelligence artificielle, Réseaux de neurones convolutifs, Apprentissage profond}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02446712/file/S0242649819300197.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02446712}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{hofman:hal-02045442, AUTHOR = {Paul Hofman and Nicholas Ayache and Pascal Barbry and Michel Barlaud and Audrey Bel and Philippe Blancou and Frédéric Checler and Sylvie Chevillard and Gael Cristofari and Mathilde Demory and Vincent Esnault and Claire Falandry and Eric Gilson and Olivier Guerin and Nicolas Glaichenhaus and Joël Guigay and Marius I. Ilie and Bernard Mari and Charles-Hugo Marquette and Véronique Paquis-Flucklinger and Frédéric Prate and Pierre Saintigny and Barbara Seitz-Polsky and Taycir Skhiri and van Obberghen-Schilling, Ellen and Emmanuel Van Obberghen and Laurent Yvan-Charvet}, JOURNAL = {Cancers}, MONTH = {February}, OPTNOTE = {}, NUMBER = {2}, PAGES = {1-11}, PUBLISHER = {MDPI}, TITLE = {The OncoAge Consortium: Linking Aging and Oncology from Bench to Bedside and Back Again}, VOLUME = {11}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.3390/cancers11020250}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {education, elderly, optimization, research, well-being, aging, cancer}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02045442/file/cancers-11-00250.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02045442}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{krebs:hal-01978339, AUTHOR = {Julian Krebs and Hervé Delingette and Boris Mailhé and Nicholas Ayache and Tommaso Mansi}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {February}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {2165-2176}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Learning a Probabilistic Model for Diffeomorphic Registration}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2019.2897112}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {deformable registration, deformation transport, latent variable model, probabilistic encoding, conditional variational autoencoder, deep learning}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01978339/file/author_files.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01978339}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{mlynarski:hal-01883716, AUTHOR = {Pawel Mlynarski and Hervé Delingette and Antonio Criminisi and Nicholas Ayache}, JOURNAL = {Computerized Medical Imaging and Graphics}, MONTH = {February}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {60-72}, PUBLISHER = {Elsevier}, TITLE = {3D Convolutional Neural Networks for Tumor Segmentation using Long-range 2D Context}, VOLUME = {73}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1016/j.compmedimag.2019.02.001}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Brain tumor, Multisequence MRI, Segmentation, 3D Convolutional Neural Networks, Ensembles of models}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01883716v2/file/Pawel_Mlynarski_segmentation.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01883716}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{mlynarski:hal-01952458, AUTHOR = {Pawel Mlynarski and Hervé Delingette and Antonio Criminisi and Nicholas Ayache}, JOURNAL = {Journal of Medical Imaging}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {SPIE Digital Library}, TITLE = {Deep Learning with Mixed Supervision for Brain Tumor Segmentation}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1117/1.JMI.6.3.034002}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Semi-supervised learning, tumor, segmentation, Convolutional Neural Networks, Convolutional N..., Semi-supervised..., MRI}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01952458/file/Pawel_Mlynarski_Mixed_Supervision_ArXiv.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01952458}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{mollero:hal-01922719, AUTHOR = {Roch Molléro and Xavier Pennec and Hervé Delingette and Nicholas Ayache and Maxime Sermesant}, JOURNAL = {International Journal for Numerical Methods in Biomedical Engineering}, MONTH = {February}, OPTNOTE = {}, NUMBER = {2}, PAGES = {e3158}, PUBLISHER = {John Wiley and Sons}, TITLE = {Population-based priors in cardiac model personalisation for consistent parameter estimation in heterogeneous databases}, VOLUME = {35}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1002/cnm.3158}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac Electromechanical Modeling, Parameter Estimation, Personalised modeling, Parameter Selection}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01922719/file/Special_Issue___Longitudinal_with_Priors_Refactoring-3.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01922719}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{orlhac:hal-02404530, AUTHOR = {Fanny Orlhac and Charles Bouveyron and Nicholas Ayache}, JOURNAL = {ERCIM News}, MONTH = {July}, OPTNOTE = {}, NUMBER = {118}, PAGES = {7-8}, PUBLISHER = {ERCIM}, TITLE = {Radiomics: How to Make Medical Images Speak?}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02404530}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{orlhac:hal-02401340, AUTHOR = {Fanny Orlhac and Frédérique Frouin and Christophe Nioche and Nicholas Ayache and Irène Buvat}, JOURNAL = {Radiology}, MONTH = {April}, OPTNOTE = {}, NUMBER = {1}, PAGES = {53-59}, PUBLISHER = {Radiological Society of North America}, TITLE = {Validation of A Method to Compensate Multicenter Effects Affecting CT Radiomics}, VOLUME = {291}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1148/radiol.2019182023}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02401340/file/radiol.2019182023.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02401340}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{sermesant:hal-02404534, AUTHOR = {Maxime Sermesant}, JOURNAL = {ERCIM News}, MONTH = {July}, OPTNOTE = {}, NUMBER = {118}, PAGES = {10-11}, PUBLISHER = {ERCIM}, TITLE = {Improving Cardiac Arrhythmia Therapy with Medical Imaging}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02404534}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{sivera:hal-01948174, AUTHOR = {Raphaël Sivera and Hervé Delingette and Marco Lorenzi and Xavier Pennec and Nicholas Ayache}, JOURNAL = {NeuroImage}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {255-270}, PUBLISHER = {Elsevier}, TITLE = {A model of brain morphological changes related to aging and Alzheimer's disease from cross-sectional assessments}, VOLUME = {198}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2019.05.040}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Imaging biomarkers, Aging, Spatio-temporal model, Brain morphology, Deformations, Alzheimer's disease}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01948174v3/file/paper-stripped.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01948174}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{takigawa:hal-02181776, AUTHOR = {Masateru Takigawa and Josselin Duchateau and Frederic Sacher and Ruairidh Martin and Konstantinos Vlachos and Takeshi Kitamura and Maxime Sermesant and Nicolas Cedilnik and Ghassen Cheniti and Antonio Frontera and Nathaniel Thompson and Calire Martin and Grégoire Massoullié and Felix Bourier and Anna Lam and Michael Wolf and William Escande and Clémentine André and Thomas Pambrun and Arnaud Denis and Nicolas Derval and Mélèze Hocini and Michel Haïssaguerre and Hubert Cochet and Pierre Jaïs}, JOURNAL = {Heart Rhythm}, MONTH = {June}, OPTNOTE = {}, NUMBER = {11}, PAGES = {1661-1668}, PUBLISHER = {Elsevier}, SERIES = {Heart Rhythm}, TITLE = {Are wall thickness channels defined by computed tomography predictive of isthmuses of postinfarction ventricular tachycardia?}, VOLUME = {16}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1016/j.hrthm.2019.06.012}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Wall thickness, Isthmus, High-resolution mapping, Contrart-enhanced multidetector computed tomography, MUSIC, Myocardial infarction, Ventricular tachycardia}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02181776/file/S1547527119305570.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02181776}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{wei:hal-02276634, AUTHOR = {Wen Wei and Emilie Poirion and Benedetta Bodini and Stanley Durrleman and Nicholas Ayache and Bruno Stankoff and Olivier Colliot}, JOURNAL = {Medical Image Analysis}, MONTH = {December}, OPTNOTE = {}, NUMBER = {101546}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {Predicting PET-derived Demyelination from Multimodal MRI using Sketcher-Refiner Adversarial Training for Multiple Sclerosis}, VOLUME = {58}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2019.101546}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Multimodal MRI, PET Imaging, Adversarial Training, Multiple Sclerosis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02276634/file/medima-hal_version.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02276634}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{wei:hal-02042526, AUTHOR = {Wen Wei and Emilie Poirion and Benedetta Bodini and Stanley Durrleman and Olivier Colliot and Bruno Stankoff and Nicholas Ayache}, JOURNAL = {Journal of Medical Imaging}, MONTH = {February}, OPTNOTE = {}, NUMBER = {01}, OPTPAGES = {}, PUBLISHER = {SPIE Digital Library}, TITLE = {Fluid-attenuated inversion recovery MRI synthesis from multisequence MRI using three-dimensional fully convolutional networks for multiple sclerosis}, VOLUME = {6}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1117/1.JMI.6.1.014005}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {MR Images, FLAIR Synthesis, 3D Fully Convolutional Networks, Multiple Sclerosis, Deep Learning}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02042526v2/file/article.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02042526}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{wimmer:hal-02402404, AUTHOR = {Wilhelm Wimmer and Lukas Anschuetz and Stefan Weder and Franca Wagner and Hervé Delingette and Marco Caversaccio}, JOURNAL = {Data in Brief}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {104782}, PUBLISHER = {Elsevier}, TITLE = {Human bony labyrinth dataset: Co-registered CT and micro-CT images, surface models and anatomical landmarks}, VOLUME = {27}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1016/j.dib.2019.104782}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Anatomy, Cochlea, Inner ear, Morphology, Semicircular canals, Vestibule}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02402404}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{zheng:hal-01975880, AUTHOR = {Qiao Zheng and Hervé Delingette and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {80-95}, PUBLISHER = {Elsevier}, TITLE = {Explainable cardiac pathology classification on cine MRI with motion characterization by semi-supervised learning of apparent flow}, VOLUME = {56}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2019.06.001}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Deep learn- ing, Cine MRI, Classifi-cation, Motion, Semi-supervised learning, Deep learn-ing, Cardiac pathology, Neural network, Apparent flow, Classifi- cation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01975880v2/file/1811.03433.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01975880}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{alessandrini:hal-02059841, AUTHOR = {Martino Alessandrini and Bidisha Chakraborty and Brecht Heyde and Olivier Bernard and de Craene, Mathieu and Maxime Sermesant and Jan d'Hooge}, JOURNAL = {IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control}, MONTH = {March}, OPTNOTE = {}, NUMBER = {3}, PAGES = {411-422}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Realistic Vendor-Specific Synthetic Ultrasound Data for Quality Assurance of 2-D Speckle Tracking Echocardiography: Simulation Pipeline and Open Access Database}, VOLUME = {65}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1109/TUFFC.2017.2786300}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02059841}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{almairac:hal-01984498, AUTHOR = {Fabien Almairac and Denys Fontaine and Thomas Demarcy and Hervé Delingette and Stephanie Beuil and Charles Raffaelli}, JOURNAL = {Journal of Neurosurgery}, MONTH = {November}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1-7}, PUBLISHER = {American Association of Neurological Surgeons}, TITLE = {Motor cortex neurovascular coupling: inputs from ultra--high-frequency ultrasound imaging in humans}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.3171/2018.5.jns18754}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Motor cortex, Ultrasound, Imaging methodology, Clinical neurophysiology, Diagnostic technique, Cerebral blood flow, Neurovascular coupling}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01984498}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{benzaquen:hal-02045478, AUTHOR = {Jonathan Benzaquen and Jacques Boutros and Charles Marquette and Hervé Delingette and Paul Hofman}, JOURNAL = {Cancers}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {MDPI}, TITLE = {Lung Cancer Screening, Towards a Multidimensional Approach: Why and How?}, VOLUME = {10}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {screening, lung cancer, artificial intelligence}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02045478/file/Benzaquen%20et%20al.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02045478}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bernard:hal-01803621, AUTHOR = {Olivier Bernard and Alain Lalande and Clement Zotti and Frederic Cervenansky and Xin Yang and Pheng-Ann Heng and Irem Cetin and Karim Lekadir and Oscar Camara and Miguel Angel Gonzalez Ballester and Gerard Sanroma and Sandy Napel and Steffen Petersen and Georgios Tziritas and Elias Grinias and Mahendra Khened and Varghese Alex Kollerathu and Ganapathy Krishnamurthi and Marc-Michel Rohé and Xavier Pennec and Maxime Sermesant and Fabian Isensee and Paul Jager and Klaus H Maier-Hein and Peter M. Full and Ivo Wolf and Sandy Engelhardt and Chrisitan Baumgartner and Lisa Koch and Jelmer Wolterink and Ivana Isgum and Yeonggul Jang and Yoonmi Hong and Jay Patravali and Shubham Jain and Olivier Humbert and Pierre-Marc Jodoin}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {May}, OPTNOTE = {}, NUMBER = {11}, PAGES = {2514-2525}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Deep Learning Techniques for Automatic MRI Cardiac Multi-structures Segmentation and Diagnosis: Is the Problem Solved?}, VOLUME = {37}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2018.2837502}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {MRI, Lleft and right ventricles, Cardiac segmentation and diagnosis, Myocardium, Deep learning}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01803621}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cabreralozoya:hal-01744142, AUTHOR = {Cabrera Lozoya, Rocio and Benjamin Berte and Hubert Cochet and Pierre Jaïs and Nicholas Ayache and Maxime Sermesant}, JOURNAL = {IEEE Transactions on Biomedical Engineering}, MONTH = {March}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Model-based Feature Augmentation for Cardiac Ablation Target Learning from Images}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1109/TBME.2018.2818300}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {intracardiac electrogram modelling, cardiac elec-, Index Terms-radio-frequency ablation planning, trophysiology modelling, electroanatomical mapping}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01744142/file/TBME2818300.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01744142}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cedilnik:hal-01875533, AUTHOR = {Nicolas Cedilnik and Josselin Duchateau and Rémi Dubois and Frédéric Sacher and Pierre Jaïs and Hubert Cochet and Maxime Sermesant}, JOURNAL = {EP-Europace}, MONTH = {November}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Oxford University Press (OUP)}, TITLE = {Fast Personalized Electrophysiological Models from CT Images for Ventricular Tachycardia Ablation Planning}, VOLUME = {20}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Computed Tomography, Computational Modelling, Catheter Ablation, Myocardial Infarction, Sudden Cardiac Death, Electrophysiology}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01875533v3/file/europace2018.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01875533}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{corneli:hal-01621757, AUTHOR = {Marco Corneli and Charles Bouveyron and Pierre Latouche and Fabrice Rossi}, JOURNAL = {Statistics and Computing}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Springer Verlag (Germany)}, TITLE = {The dynamic stochastic topic block model for dynamic networks with textual edges}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1007/s11222-018-9832-4}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Dynamic random graph, model based clustering, non homogeneous Poisson process, stochastic block model, topic modeling, latent Dirichlet allocation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01621757/file/Dstbm_paper.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01621757}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{duchateau:hal-01533788, AUTHOR = {Nicolas Duchateau and Maxime Sermesant and Hervé Delingette and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {755-766}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Model-based generation of large databases of cardiac images: synthesis of pathological cine MR sequences from real healthy cases}, VOLUME = {37}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2017.2714343}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {validation, magnetic resonance., biomechanical modeling, Image synthesis and simulation, myocardial infarct, large database for machine learning}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01533788/file/jDuchateau_TMI_2017_FINAL.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01533788}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{feng:hal-01826055, AUTHOR = {Leman Feng and Pierre Alliez and Laurent Busé and Hervé Delingette and Mathieu Desbrun}, JOURNAL = {ACM Transactions on Graphics}, MONTH = {August}, OPTNOTE = {}, NUMBER = {4}, PAGES = {16}, PUBLISHER = {Association for Computing Machinery}, SERIES = {Proceedings of SIGGRAPH 2018}, TITLE = {Curved Optimal Delaunay Triangulation}, VOLUME = {37}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1145/3197517.3201358}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Bézier elements ACM Reference Format:, Mesh generation, Bézier elements, Additional Key Words and Phrases: Higher-order meshing, Optimal Delau-nay Triangulations, CCS Concepts: $\bullet$ Mathematics of computing $\rightarrow$ Mesh generation, higher order finite elements, Optimal Delaunay Triangulations, Higher-order meshing}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01826055/file/CODT-preprint-final.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01826055}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ferraris:hal-01843151, AUTHOR = {Sebastiano Ferraris and van Der Merwe, Johannes and van Der Veeken, Lennart and Ferran Prados and Juan Eugenio Iglesias and Marco Lorenzi and Andrew Melbourne and Marc M Modat and Willy Gsell and Jan Deprest and Tom Vercauteren}, JOURNAL = {NeuroImage}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {187 - 198}, PUBLISHER = {Elsevier}, TITLE = {A magnetic resonance multi-atlas for the neonatal rabbit brain}, VOLUME = {179}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2018.06.029}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01843151/file/hal-01843151.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01843151}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{giffardroisin:hal-01796483, AUTHOR = {Sophie Giffard-Roisin and Hervé Delingette and Thomas Jackson and Jessica Webb and Lauren Fovargue and Jack Lee and Christopher A Rinaldi and Reza Razavi and Nicholas Ayache and Maxime Sermesant}, JOURNAL = {IEEE Transactions on Biomedical Engineering}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Transfer Learning from Simulations on a Reference Anatomy for ECGI in Personalised Cardiac Resynchronization Therapy}, VOLUME = {20}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1109/TBME.2018.2839713}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac Electrophysiology, Inverse Problem of ECG, Personalisation, ECG Imaging, Index Terms-Cardiac Electrophysiology, In- verse Problem of ECG}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01796483v2/file/FINAL_VERSION_CORR.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01796483}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{gori:hal-01709847, AUTHOR = {Pietro Gori and Olivier Colliot and Linda Marrakchi Kacem and Yulia Worbe and Alexandre Routier and Cyril Poupon and Andreas Hartmann and Nicholas Ayache and Stanley Durrleman}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {September}, OPTNOTE = {}, NUMBER = {9}, PAGES = {2033-2043}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Double diffeomorphism: combining morphometry and structural connectivity analysis}, VOLUME = {37}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2018.2813062}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Neural circuits, Structural connectivity, Diffeomorphisms, Multi-object, Atlas, Shape, Morphometry, Complex, Tourette}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01709847v2/file/Double_Diffeo_paper_Review2_Clean%20modified.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01709847}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{karim:hal-01926935, AUTHOR = {Rashed Karim and Lauren-Emma Blake and Jiro Inoue and Qian Tao and Shuman Jia and R. James James Housden and Pranav Bhagirath and Jean-Luc Duval and Marta Varela and Jonathan Behar and Loïc Cadour and van Der Geest, Rob J and Hubert Cochet and Maria Drangova and Maxime Sermesant and Reza Razavi and Oleg Aslanidi and Ronak Rajani and Kawal S. Rhode}, JOURNAL = {Medical Image Analysis}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {36 - 53}, PUBLISHER = {Elsevier}, TITLE = {Algorithms for left atrial wall segmentation and thickness -- Evaluation on an open-source CT and MRI image database}, VOLUME = {50}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2018.08.004}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Myocardium, Left atrial wall thickness, Left atrium, Atrial fibrillation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01926935/file/1-s2.0-S1361841518306431-main.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01926935}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lorenzi:hal-01756811, AUTHOR = {Marco Lorenzi and Andre Altmann and Boris Gutman and Selina Wray and Charles Arber and Derrek D Hibar and Neda J Jahanshad and Jonathan Schott and Daniel Alexander and Paul M. Thompson and Sébastien Ourselin}, JOURNAL = {Proceedings of the National Academy of Sciences of the United States of America}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {12}, PAGES = {3162-3167}, PUBLISHER = {National Academy of Sciences}, TITLE = {Susceptibility of brain atrophy to TRIB3 in Alzheimer's disease, evidence from functional prioritization in imaging genetics}, VOLUME = {115}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1073/pnas.1706100115}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {bioinformatics, phenotype, imaging-genetics, Alzheimer's disease, genotype, GWA}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01756811/file/Brain_genes-UCL_USC-review_V3.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01756811}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{mcleod:hal-01736454, AUTHOR = {Kristin Mcleod and Kristin Tondel and Lilian Calvet and M Sermesant and Xavier Pennec}, JOURNAL = {IEEE Transactions on Biomedical Engineering}, MONTH = {December}, OPTNOTE = {}, NUMBER = {12}, PAGES = {2769 - 2780}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Cardiac Motion Evolution Model for Analysis of Functional Changes Using Tensor Decomposition and Cross-Sectional Data}, VOLUME = {65}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1109/TBME.2018.2816519}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {tensor decomposition, evolution modelling, Cardiac motion tracking, non-rigid image registration, spatio-temporal alignment, N-way PLS, atlas, population statistics, Tetralogy of Fallot}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01736454/file/TBME2816519.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01736454}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{miolane:hal-01655366, AUTHOR = {Nina Miolane and Susan Holmes and Xavier Pennec}, JOURNAL = {SIAM Journal on Applied Algebra and Geometry}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {348-375}, PUBLISHER = {Society for Industrial and Applied Mathematics}, TITLE = {Topologically constrained template estimation via Morse-Smale complexes controls its statistical consistency}, VOLUME = {2}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1137/17M1129222}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01655366/file/siaga_article.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01655366}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{moceri:hal-01533793, AUTHOR = {Pamela Moceri and Nicolas Duchateau and Delphine Baudouy and Elie-Dan Schouver and Sylvie Leroy and Fabien Squara and Emile Ferrari and Maxime Sermesant}, JOURNAL = {European Heart Journal - Cardiovascular Imaging}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {450-458}, PUBLISHER = {Oxford UP}, TITLE = {Three-dimensional right-ventricular regional deformation and survival in pulmonary hypertension}, VOLUME = {19}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1093/ehjci/jex163}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {pulmonary hypertension, speckle-tracking imaging, three-dimensional echocardiography}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01533793/file/jMoceri_EHJCI_2017_FINAL.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01533793}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{moceri:hal-01926967, AUTHOR = {Pamela Moceri and Maxime Sermesant and Delphine Baudouy and Emile Ferrari and Nicolas Duchateau}, JOURNAL = {Canadian Journal of Cardiology}, MONTH = {October}, OPTNOTE = {}, NUMBER = {10}, PAGES = {1369.e9 - 1369.e11}, PUBLISHER = {Elsevier}, TITLE = {Right Ventricular Function Evolution With Pregnancy in Repaired Tetralogy of Fallot}, VOLUME = {34}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1016/j.cjca.2018.06.010}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Pregnancy, Echocardiography, Right Ventricular Function, 3D speckle-tracking imaging, Key-words: Tetralogy of Fallot}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01926967/file/jMoceri_CJC_2018_FINALok.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01926967}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{nioche:hal-01938545, AUTHOR = {Christophe Nioche and Fanny Orlhac and Sarah Boughdad and Sylvain Reuzé and Jessica Goya-Outi and Charlotte Robert and Claire Pellot-Barakat and Michael Soussan and Frédérique Frouin and Irene Buvat}, JOURNAL = {Cancer Research}, MONTH = {August}, OPTNOTE = {}, NUMBER = {16}, PAGES = {4786 - 4789}, PUBLISHER = {American Association for Cancer Research}, TITLE = {LIFEx: A Freeware for Radiomic Feature Calculation in Multimodality Imaging to Accelerate Advances in the Characterization of Tumor Heterogeneity}, VOLUME = {78}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1158/0008-5472.CAN-18-0125}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01938545}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{orlhac:hal-01953538, AUTHOR = {Fanny Orlhac and Frédérique Frouin and Christophe Nioche and Nicholas Ayache and Irene Buvat}, JOURNAL = {Radiology}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Radiological Society of North America}, TITLE = {Validation of a method to compensate multicenter effects affecting CT radiomic features}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01953538/file/Version_HAL.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01953538}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{orlhac:hal-01811514, AUTHOR = {F Orlhac and P.-A Mattei and C. Bouveyron and N Ayache}, JOURNAL = {Journal of Chemometrics}, MONTH = {November}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {e3097}, PUBLISHER = {Wiley}, TITLE = {Class-specific Variable Selection in High-Dimensional Discriminant Analysis through Bayesian Sparsity}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1002/cem.3097}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01811514/file/sparseHDDA_v1.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01811514}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{pennec:hal-01343881, AUTHOR = {Xavier Pennec}, JOURNAL = {Annals of Statistics}, MONTH = {July}, OPTNOTE = {}, NUMBER = {6A}, PAGES = {2711-2746}, PUBLISHER = {Institute of Mathematical Statistics}, TITLE = {Barycentric Subspace Analysis on Manifolds}, VOLUME = {46}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1214/17-AOS1636}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Manifold, Flag of subspaces, Frechet mean, Barycenter, Subspaces, Pricipal Component Analysis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01343881v2/file/AOS1636-WithSupplements.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01343881}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{rohe:hal-01677685, AUTHOR = {Marc-Michel Rohé and Maxime Sermesant and Xavier Pennec}, JOURNAL = {Medical Image Analysis}, MONTH = {April}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1-12}, PUBLISHER = {Elsevier}, TITLE = {Low-Dimensional Representation of Cardiac Motion Using Barycentric Subspaces: a New Group-Wise Paradigm for Estimation, Analysis, and Reconstruction}, VOLUME = {45}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2017.12.008}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac motion, Low-dimensional analysis, Registration, Image synthesis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01677685/file/barycentric_article.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01677685}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{sanchezmartinez:hal-02282401, AUTHOR = {Sergio Sanchez-Martinez and Nicolas Duchateau and Tamas Erdei and Gabor Kunszt and Svend Aakhus and Anna Degiovanni and Paolo Marino and Erberto Carluccio and Gemma Piella and Alan Fraser and Bart Bijnens}, JOURNAL = {Circulation: Cardiovascular Imaging}, MONTH = {April}, OPTNOTE = {}, NUMBER = {4}, OPTPAGES = {}, PUBLISHER = {American Heart Association}, TITLE = {Machine learning analysis of left ventricular function to characterize heart failure with preserved ejection fraction}, VOLUME = {11}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1161/CIRCIMAGING.117.007138}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Excercise echocardiography, Heart failure with preservec ejection fraction, Myocardial velocity, Machine learning, Non-invasive diagnostic heart failure}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02282401/file/jsanchez_circim_2018_finalok.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02282401}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{scelzi:hal-01843380, AUTHOR = {Marzia A Scelzi and Raiyan R Khan and Marco Lorenzi and Christopher Leigh and Michael D Greicius and Jonathan M. Schott and Sébastien Ourselin and Andre Altmann}, JOURNAL = {Brain - A Journal of Neurology}, MONTH = {July}, OPTNOTE = {}, NUMBER = {7}, PAGES = {2167 - 2180}, PUBLISHER = {Oxford University Press (OUP)}, TITLE = {Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci}, VOLUME = {141}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1093/brain/awy141}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01843380/file/awy141.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01843380}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{suinesiaputra:hal-01533805, AUTHOR = {Avan A Suinesiaputra and Pierre A Ablin and Xènia A Albà and Martino Alessandrini and Jack A Allen and Wenjia Bai and Serkan Cimen and Peter Claes and Brett R Cowan and Jan d'Hooge and Nicolas Duchateau and Jan Ehrhardt and Alejandro F. Frangi and Ali A Gooya and Vicente Grau and Karim Lekadir and Allen A Lu and Anirban A Mukhopadhyay and Ilkay Oksuz and Nripesh Parajuli and Xavier Pennec and Marco Pereañez and Catarina Pinto and Paolo Piras and Marc-Michel Rohé and Daniel R Rueckert and Dennis Säring and Maxime Sermesant and Kaleem Siddiqi and Mahdi Tabassian and Luciano Teresi and Sotirios A Tsaftaris and Matthias Wilms and Alistair A Young and Xingyu Zhang and Pau Medrano-Gracia}, JOURNAL = {IEEE Journal of Biomedical and Health Informatics}, MONTH = {March}, OPTNOTE = {}, NUMBER = {3}, PAGES = {503-515}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Statistical shape modeling of the left ventricle: myocardial infarct classification challenge}, VOLUME = {22}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1109/JBHI.2017.2652449}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {statistical shape analysis, classification, myocardial infarct, Cardiac modeling}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01533805/file/jSuinesiaputra_JBHI_2017_FINAL.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01533805}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{zheng:hal-01753086, AUTHOR = {Qiao Zheng and Hervé Delingette and Nicolas Duchateau and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {April}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {2137-2148}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {3D Consistent & Robust Segmentation of Cardiac Images by Deep Learning with Spatial Propagation}, VOLUME = {37}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {deep learning, spatial propagation, Cardiac segmentation, 3D consistency, neural network}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01753086/file/FINAL%20VERSION.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01753086}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{zhou:hal-01533366, AUTHOR = {Yitian Zhou and Sophie Giffard-Roisin and de Craene, Mathieu and Sorina Camarasu-Pop and Jan d'Hooge and Martino Alessandrini and Denis Friboulet and Maxime Sermesant and Olivier Bernard}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {741-754}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {A Framework for the Generation of Realistic Synthetic Cardiac Ultrasound and Magnetic Resonance Imaging Sequences from the same Virtual Patients}, VOLUME = {37}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2017.2708159}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {cardiac strain, Multimodal cardiac imaging, synthetic sequences, electromechanical model, motion estimation, numerical simulation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01533366/file/TMI2708159.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01533366}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{ayache:hal-01882558, OPTADDRESS = {}, AUTHOR = {Nicholas Ayache}, BOOKTITLE = {Santé et intelligence artificielle}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Cédric Villani and Bernard Nordlinger}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {151-154}, PUBLISHER = {CNRS Editions}, OPTSERIES = {}, TITLE = {L'imagerie médicale à l'heure de l'intelligence artificielle}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01882558/file/Ayache-Livre-IA-Sante%CC%81-Imagerie-vf.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01882558}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{bouveyron:hal-01884468, OPTADDRESS = {}, AUTHOR = {Charles Bouveyron}, BOOKTITLE = {Santé et intelligence artificielle}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Cédric Villani and Bernard Nordlinger}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {179-189}, PUBLISHER = {CNRS Editions}, OPTSERIES = {}, TITLE = {Apprentissage statistique en grande dimension et application au diagnostic oncologique par radiomique}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01884468/file/Article-ANM.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01884468}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bruse:hal-01880221, AUTHOR = {Jan L. Bruse and Elena Cervi and Kristin Mcleod and Giovanni Biglino and Maxime Sermesant and Xavier Pennec and Andrew Taylor and Silvia Schievano and Tain-Yen Hsia}, JOURNAL = {Annals of Thoracic Surgery}, MONTH = {February}, OPTNOTE = {}, NUMBER = {2}, PAGES = {645 - 654}, PUBLISHER = {Elsevier}, TITLE = {Looks Do Matter! Aortic Arch Shape After Hypoplastic Left Heart Syndrome Palliation Correlates With Cavopulmonary Outcomes}, VOLUME = {103}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1016/j.athoracsur.2016.06.041}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01880221}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bruse:hal-01387297, AUTHOR = {Jan L. Bruse and Abbas Khushnood and Kristin Mcleod and Giovanni Biglino and Maxime Sermesant and Xavier Pennec and Andrew M. Taylor and Tain-Yen Hsia and Silvia Schievano}, JOURNAL = {Journal of Thoracic and Cardiovascular Surgery}, MONTH = {February}, OPTNOTE = {}, NUMBER = {2}, PAGES = {418 - 427}, PUBLISHER = {Elsevier}, TITLE = {How successful is successful? Aortic arch shape after successful aortic coarctation repair correlates with left ventricular function}, VOLUME = {153}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1016/j.jtcvs.2016.09.018}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01387297}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bruse:hal-01421202, AUTHOR = {Jan L. Bruse and Maria A. Zuluaga and Abbas Khushnood and Kristin Mcleod and Hopewell N. Ntsinjana and Tain-Yen Hsia and Maxime Sermesant and Xavier Pennec and Andrew M. Taylor and Silvia Schievano}, JOURNAL = {IEEE Transactions on Biomedical Engineering}, MONTH = {February}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1 - 13}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Detecting clinically meaningful shape clusters in medical image data: metrics analysis for hierarchical clustering applied to healthy and pathological aortic arches}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1109/TBME.2017.2655364}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01421202v2/file/07857751.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01421202}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{demarcy:hal-01528489, AUTHOR = {Thomas Demarcy and Clair Vandersteen and Nicolas Guevara and Charles Raffaelli and Dan Gnansia and Nicholas Ayache and Hervé Delingette}, JOURNAL = {Computerized Medical Imaging and Graphics}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {July 2017}, PAGES = {1 - 12}, PUBLISHER = {Elsevier}, TITLE = {Automated analysis of human cochlea shape variability from segmented $\mu$CT images}, VOLUME = {59}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1016/j.compmedimag.2017.04.002}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {cochlear implant, human cochlea, anatomy, shape variability, modiolar axis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01528489/file/DemarcyCMIG_1503.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01528489}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{devilliers:hal-01543616, AUTHOR = {Loïc Devilliers and Stéphanie Allassonnière and Alain Trouvé and Xavier Pennec}, JOURNAL = {Entropy}, MONTH = {June}, OPTNOTE = {}, NUMBER = {6}, PAGES = {article 288}, PUBLISHER = {MDPI}, TITLE = {Inconsistency of template estimation by minimizing of the variance/pre-variance in the quotient space}, VOLUME = {19}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.3390/e19060288}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {quotient space, Fréchet mean, Hilbert space, deformable model, regularization, template estimation, inconsistency}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01543616/file/entropyHal.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01543616}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{devilliers:hal-01352707, AUTHOR = {Loïc Devilliers and Stéphanie Allassonnière and Alain Trouvé and Xavier Pennec}, JOURNAL = {SIAM Journal on Imaging Sciences}, MONTH = {August}, OPTNOTE = {}, NUMBER = {3}, PAGES = {1139-1169}, PUBLISHER = {Society for Industrial and Applied Mathematics}, TITLE = {Template estimation in computational anatomy: Fréchet means in top and quotient spaces are not consistent}, VOLUME = {10}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1137/16M1083931}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Fréchet mean, Hilbert space, quotient space, Template, manifold, empirical Fréchet mean, inconsistency, group action, consistency bias}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01352707v4/file/InconsistencySIIMSDevilliers.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01352707}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{giffardroisin:hal-01397393, AUTHOR = {Sophie Giffard-Roisin and Thomas Jackson and Lauren Fovargue and Jack Lee and Hervé Delingette and Reza Razavi and Nicholas Ayache and Maxime Sermesant}, JOURNAL = {IEEE Transactions on Biomedical Engineering}, MONTH = {September}, NOTE = {Selected for the TBME highlights, sept. 2017rlhttps://tbme.embs.org/2017/08/24/non-invasive-personalisation-cardiac-electrophysiology-model-body-surface-potential-mapping/}, NUMBER = {9}, PAGES = {2206 - 2218}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, SERIES = {IEEE Transactions on Biomedical Engineering}, TITLE = {Non-Invasive Personalisation of a Cardiac Electrophysiology Model from Body Surface Potential Mapping}, VOLUME = {64}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1109/TBME.2016.2629849}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {ECG Imaging, Parameter estimation, In- verse Problem of ECG, Cardiac Electrophysiology, Personalisation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01397393/file/TBME_acceptedversion.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01397393}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{gori:hal-01359423, AUTHOR = {Pietro Gori and Olivier Colliot and Linda Marrakchi-Kacem and Yulia Worbe and Cyril Poupon and Andreas Hartmann and Nicholas Ayache and Stanley Durrleman}, JOURNAL = {Medical Image Analysis}, MONTH = {January}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {458-474}, PUBLISHER = {Elsevier}, TITLE = {A Bayesian Framework for Joint Morphometry of Surface and Curve meshes in Multi-Object Complexes}, VOLUME = {35}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2016.08.011}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {complex, fiber bundle, morphometry, shape, Bayesian, varifolds, atlas, multi - object}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01359423/file/Articolo_Bayesian_LAST.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01359423}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{khanal:hal-01348959, AUTHOR = {Bishesh Khanal and Nicholas Ayache and Xavier Pennec}, JOURNAL = {Frontiers in Neuroscience}, MONTH = {February}, OPTNOTE = {}, NUMBER = {Article 132}, PAGES = {18}, PUBLISHER = {Frontiers}, TITLE = {Simulating Longitudinal Brain MRIs with known Volume Changes and Realistic Variations in Image Intensity}, VOLUME = {11}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.3389/fnins.2017.00132}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {simulated database, biomechanical simulation, Neurodegeneration, biophysical modelling, synthetic images, synthetic}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01348959v3/file/fnins-11-00132.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01348959}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lefolgoc:hal-01149544, AUTHOR = {Le Folgoc, Loïc and Hervé Delingette and Antonio Criminisi and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {February}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {79 - 97}, PUBLISHER = {Elsevier}, TITLE = {Sparse Bayesian registration of medical images for self-tuning of parameters and spatially adaptive parametrization of displacements}, VOLUME = {36}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2016.09.008}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac Imaging, Automatic Relevance Determination, Bayesian modelling, Sparse, Registration}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01149544v2/file/lefolgoc2016MedIA-accepted-HAL-version.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01149544}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lorenzi:hal-01617750, AUTHOR = {Marco Lorenzi and Maurizio Filippone and Giovanni Frisoni and Daniel C Alexander and Sébastien Ourselin}, JOURNAL = {NeuroImage}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {Probabilistic disease progression modeling to characterize diagnostic uncertainty: application to staging and prediction in Alzheimer's disease}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01617750/file/time_series_journal.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01617750}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{mendelson:hal-01843390, AUTHOR = {Alex F. Mendelson and Maria A. Zuluaga and Marco Lorenzi and Brian F. Hutton and Sébastien Ourselin}, JOURNAL = {Neuroimage-Clinical}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {400 - 416}, PUBLISHER = {Elsevier}, TITLE = {Selection bias in the reported performances of AD classification pipelines}, VOLUME = {14}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1016/j.nicl.2016.12.018}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Alzheimer's disease, Classification, Cross validation, Selection bias, Overfitting, ADNI}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01843390/file/1-s2.0-S221315821630256X-main.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01843390}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{miolane:hal-01503822, AUTHOR = {Nina Miolane}, JOURNAL = {Interstices}, MONTH = {February}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {INRIA}, TITLE = {Les maths de l'espace-temps qui décrivent et dépassent le cerveau}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {anatomie cérébrale, anatomie numérique, modélisation mathématique, géométrie riemannienne, cortex visuel, neuroimagerie, image 3D, perception visuelle}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01503822}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{miolane:hal-01350508, AUTHOR = {Nina Miolane and Susan Holmes and Xavier Pennec}, JOURNAL = {SIAM Journal on Imaging Sciences}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {808 - 844}, PUBLISHER = {Society for Industrial and Applied Mathematics}, TITLE = {Template Shape Estimation: Correcting an Asymptotic Bias}, VOLUME = {10}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1137/16M1084493}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {geometry, quotient space, manifold, template, bias, shape, consistency}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01350508v2/file/siims_article_black.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01350508}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{mollero:hal-01656008, AUTHOR = {Roch Molléro and Xavier Pennec and Hervé Delingette and Alan Garny and Nicholas Ayache and Maxime Sermesant}, JOURNAL = {Biomechanics and Modeling in Mechanobiology}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1-16}, PUBLISHER = {Springer Verlag}, TITLE = {Multifidelity-CMA: a multifidelity approach for efficient personalisation of 3D cardiac electromechanical models}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1007/s10237-017-0960-0}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Finite Element Mechanical modeling, Parameter Estimation, Reduced Model, Cardiac Electromechanical Modeling, Multi-fidelity Modeling}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01656008/file/BMMB_Paper___Multifidelity_CMA___Camera_Ready.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01656008}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{rodriguezflorez:hal-01540631, AUTHOR = {Naiara Rodriguez-Florez and Jan L. Bruse and Alessandro Borghi and Herman Vercruysse and Juling Ong and Greg James and Xavier Pennec and David J. Dunaway and Owase Jeelani and Silvia Schievano}, JOURNAL = {International Journal of Computer Assisted Radiology and Surgery}, MONTH = {May}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1-11}, PUBLISHER = {Springer Verlag}, TITLE = {Statistical shape modelling to aid surgical planning: associations between surgical parameters and head shapes following spring-assisted cranioplasty}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1007/s11548-017-1614-5}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01540631/file/Rodriguez-Florez_et_al-2017-International_Journal_of_Computer_Assisted_Radiology_and_Surgery.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01540631}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{sanchezmartinez:hal-01331550, AUTHOR = {Sergio Sanchez-Martinez and Nicolas Duchateau and Tamas Erdei and Alan Fraser and Bart Bijnens and Gemma Piella}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {70--82}, PUBLISHER = {Elsevier}, TITLE = {Characterization of myocardial motion patterns by unsupervised multiple kernel learning}, VOLUME = {35}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2016.06.007}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {echocardiography, pattern analysis, multiple kernel learning, Myocardial motion}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01331550/file/jsanchezmartinez_media_2016_finalok.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01331550}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{schulze:hal-01598299, AUTHOR = {Walther Schulze and Zhong Chen and Jatin Relan and Danila Potyagaylo and Martin W. Krueger and Rashed Karim and Manav Sohal and Anoop Shetty and Yingliang Ma and Nicholas Ayache and Maxime Sermesant and Hervé Delingette and Julian Bostock and Reza Razavi and Kawal S. Rhode and Christopher A. Rinaldi}, JOURNAL = {Medical and Biological Engineering and Computing}, MONTH = {June}, OPTNOTE = {}, NUMBER = {6}, PAGES = {979 - 990}, PUBLISHER = {Springer Verlag}, TITLE = {ECG imaging of ventricular tachycardia: evaluation against simultaneous non-contact mapping and CMR-derived grey zone}, VOLUME = {55}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1007/s11517-016-1566-x}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Clinical validation, Non-contact mapping, ECG imaging, Ventricular tachycardia, Inverse problem of ECG}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01598299/file/10.1007-s11517-016-1566-x.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01598299}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{sotoiglesias:hal-01398828, AUTHOR = {David Soto-Iglesias and Nicolas Duchateau and Constantine Butakoff and David Andreu and Juan Fernández-Armenta and Bart Bijnens and Antonio Berruezo and Marta Sitges and Oscar Camara}, JOURNAL = {IEEE Journal of Translational Engineering in Health and Medicine}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1900215}, PUBLISHER = {IEEE}, TITLE = {Quantitative analysis of electro-anatomical maps: application to an experimental model of LBBB/CRT}, VOLUME = {5}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1109/JTEHM.2016.2634006}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {electro - anatomical mapping system, quantitative pattern analysis, left bundle branch block, subject - specific 2D and 3D data representation, Cardiac resynchronization therapy, lead placement}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01398828/file/jSoto_JTEHM_2017_FINAL.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01398828}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{tian:hal-01975531, AUTHOR = {Zhiyu Tian and Chenyang Xu}, JOURNAL = {Compositio Mathematica}, MONTH = {February}, OPTNOTE = {}, NUMBER = {02}, PAGES = {257-273}, PUBLISHER = {Foundation Compositio Mathematica}, TITLE = {Finiteness of fundamental groups}, VOLUME = {153}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01975531}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{marchesseau:hal-01536406, OPTADDRESS = {}, AUTHOR = {Stéphanie Marchesseau and Simon Chatelin and Hervé Delingette}, BOOKTITLE = {Biomechanics of Living Organs}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Yohan Payan and Jacques Ohayon}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {602}, PUBLISHER = {Elsevier}, OPTSERIES = {}, TITLE = {Non linear Biomechanical Model of the Liver}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Liver, Biomechanics, Rheology, Finite element method}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01536406/file/LiverHyperElasticity.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01536406}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{marchesseau:hal-03040194, OPTADDRESS = {}, AUTHOR = {Stéphanie Marchesseau and Simon Chatelin and Hervé Delingette}, BOOKTITLE = {Biomechanics of Living Organs. Hyperelastic Constitutive Laws for Finite Element Modeling}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Yohan Payan and Jacques Ohayon}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {243 - 265}, PUBLISHER = {Elsevier}, OPTSERIES = {}, TITLE = {Nonlinear Biomechanical Model of the Liver}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1016/b978-0-12-804009-6.00011-0}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03040194/file/LiverHyperElasticity%20Submitted.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03040194}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{alessandrini:hal-01373083, AUTHOR = {Martino Alessandrini and Brecht Heyde and Sandro Queirós and Szymon Cygan and Maria Zontak and Oudom Somphone and Olivier Bernard and Maxime Sermesant and Hervé Delingette and Daniel Barbosa and de Craene, Mathieu and Matthew O'Donnell and Jan d'Hooge}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {8}, PAGES = {1915-1926}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Detailed Evaluation of Five 3D Speckle Tracking Algorithms Using Synthetic Echocardiographic Recordings}, VOLUME = {35}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2016.2537848}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01373083/file/main.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01373083}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{audigier:hal-01423321, AUTHOR = {Chloé Audigier and Tommaso Mansi and Hervé Delingette and Saikiran Rapaka and Tiziano Passerini and Viorel Mihalef and Marie-Pierre Jolly and Raoul Pop and Michele Diana and Luc Soler and Ali Kamen and Dorin Comaniciu and Nicholas Ayache}, JOURNAL = {International Journal of Computer Assisted Radiology and Surgery}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Springer Verlag}, TITLE = {Comprehensive Pre-Clinical Evaluation of a Multi-physics Model of Liver Tumor Radiofrequency Ablation}, OPTVOLUME = {}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1007/s11548-016-1517-x}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01423321/file/IJCARS_Audigier_2016.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01423321}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache:hal-01320985, AUTHOR = {Nicholas Ayache}, JOURNAL = {IMIA Yearbook of Medical Informatics}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {Suppl. 1}, PAGES = {S8-S9}, PUBLISHER = {Schattauer}, TITLE = {Medical Imaging Informatics: Towards a Personalized Computational Patient}, VOLUME = {25}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.15265/IYS-2016-s002}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01320985/file/Ayache-IMIA-Yearbook-2016-v6-preprint.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01320985}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache:hal-01353697, AUTHOR = {Nicholas Ayache and James Duncan}, JOURNAL = {Medical Image Analysis}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1-3}, PUBLISHER = {Elsevier}, TITLE = {20th anniversary of the medical image analysis journal (MedIA)}, VOLUME = {33}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2016.07.004}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01353697/file/Edito_Ayache.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01353697}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bruse:hal-01335147, AUTHOR = {Jan L. Bruse and Kristin Mcleod and Giovanni Biglino and Hopewell N. Ntsinjana and Claudio Capelli and Tain-Yen Hsia and Maxime Sermesant and Xavier Pennec and Andrew M. Taylor and Silvia Schievano}, JOURNAL = {BMC Medical Imaging}, MONTH = {May}, OPTNOTE = {}, NUMBER = {1}, OPTPAGES = {}, PUBLISHER = {BioMed Central}, TITLE = {A statistical shape modelling framework to extract 3D shape biomarkers from medical imaging data: assessing arch morphology of repaired coarctation of the aorta}, VOLUME = {16}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1186/s12880-016-0142-z}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01335147/file/art3A10_1186_s12880-016-0142.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01335147}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bruse:hal-03063907, AUTHOR = {Jan Bruse and Hopewell Ntsinjana and Claudio Capelli and Giovanni Biglino and Kristin Mcleod and Maxime Sermesant and Xavier Pennec and Tain-Yen Hsia and Silvia Schievano and Andrew Taylor}, JOURNAL = {Journal of Cardiovascular Magnetic Resonance}, MONTH = {December}, OPTNOTE = {}, NUMBER = {S1}, OPTPAGES = {}, PUBLISHER = {BioMed Central}, TITLE = {CMR-based 3D statistical shape modelling reveals left ventricular morphological differences between healthy controls and arterial switch operation survivors}, VOLUME = {18}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1186/1532-429X-18-S1-Q2}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03063907}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cabreralozoya:hal-01313615, AUTHOR = {Rocìo Cabrera-Lozoya and Benjamin Berte and Hubert Cochet and Pierre Jaïs and Nicholas Ayache and Maxime Sermesant}, JOURNAL = {IEEE Transactions on Biomedical Engineering}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {99}, OPTPAGES = {}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Image-based Biophysical Simulation of Intracardiac Abnormal Ventricular Electrograms}, VOLUME = {PP}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1109/TBME.2016.2562918}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {electroanatomical mapping, intracar-diac electrogram modelling, radiofrequency ablation planning, cardiac electrophysiology modelling}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01313615/file/HALfile.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01313615}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{chabiniok:hal-01277684, AUTHOR = {Radomir Chabiniok and Vicky Y. Wang and Myrianthi Hadjicharalambous and Liya Asner and Jack Lee and Maxime Sermesant and Ellen Kuhl and Alistair A. Young and Philippe Moireau and Martyn P. Nash and Dominique Chapelle and David Nordsletten}, JOURNAL = {Interface Focus}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, OPTPAGES = {}, PUBLISHER = {Royal Society publishing}, TITLE = {Multiphysics and multiscale modelling, data-model fusion and integration of organ physiology in the clinic: ventricular cardiac mechanics}, VOLUME = {6}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1098/rsfs.2015.0083}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {translational cardiac modelling, patient-specific modelling, heart mechanics, cardiac mechanics, data-model fusion}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01277684/file/20150083.full.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01277684}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{chen:hal-01301426, AUTHOR = {Zhong Chen and Rocìo Cabrera-Lozoya and Jatin Relan and Manav Sohal and Anoop Shetty and Rashed Karim and Hervé Delingette and Jaswinder Gill and Kawal Rhode and Nicholas Ayache and Peter Taggart and Christopher Aldo Rinaldi and Maxime Sermesant and Reza Razavi}, JOURNAL = {Journal of Cardiovascular Electrophysiology}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {7}, PAGES = {851-860}, PUBLISHER = {Wiley}, TITLE = {Biophysical modelling predicts ventricular tachycardia inducibility and circuit morphology: A combined clinical validation and computer modelling approach}, VOLUME = {27}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1111/jce.12991}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {cardiac magnetic resonance imaging, conductivity, APD restitution, computer modelling, Ventricular tachycardia}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01301426/file/Biophysical%20modelling%20to%20predict%20VT%20Manuscript%20JCE%20Revised%20%2010042016.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01301426}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cordier:hal-01343233, AUTHOR = {Nicolas Cordier and Hervé Delingette and Matthieu Lê and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {July}, OPTNOTE = {}, NUMBER = {99}, OPTPAGES = {}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Extended Modality Propagation: Image Synthesis of Pathological Cases}, VOLUME = {PP}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2016.2589760}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {patch-based, multi-atlas, glioma, generative model, medical image simulation, modality synthesis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01343233/file/Cordier-TMI-2016-preprint.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01343233}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{duchateau:hal-01314767, AUTHOR = {Nicolas Duchateau and de Craene, Mathieu and Pascal Allain and Eric Saloux and Maxime Sermesant}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {10}, PAGES = {2340-2352}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Infarct localization from myocardial deformation: Prediction and uncertainty quantification by regression from a low-dimensional space}, VOLUME = {35}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2016.2562181}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {biomechanical modeling, delayed-enhancement, pattern recognition & classification, Index Terms-Myocardial infarct, dimensionality reduction, computer-aided diagnosis, ultrasound}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01314767/file/jDuchateau_TMI_2016_FINALok1.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01314767}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{gnansia:hal-01326507, AUTHOR = {Dan Gnansia and Thomas Demarcy and Clair Vandersteen and Charles Raffaelli and Nicolas Guevara and Hervé Delingette and Nicholas Ayache}, JOURNAL = {European Annals of Otorhinolaryngology, Head and Neck Diseases}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {S66-S67}, PUBLISHER = {Elsevier Masson}, TITLE = {Optimal electrode diameter in relation to volume of the cochlea}, VOLUME = {133, Supplement 1}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1016/j.anorl.2016.04.013}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cochlear implant, Electrode-array, Hearing preservation, Soft surgery, Electrode-array design, Image processing, Computed tomography, Inner ear, Anatomy}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01326507/file/ANORL.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01326507}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{gori:hal-01346067, AUTHOR = {Pietro Gori and Olivier Colliot and Linda Marrakchi-Kacem and Yulia Worbe and de Vico Fallani, Fabrizio and Mario Chavez and Cyril Poupon and Andreas Hartmann and Nicholas Ayache and Stanley Durrleman}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {99}, OPTPAGES = {}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Parsimonious Approximation of Streamline Trajectories in White Matter Fiber Bundles}, VOLUME = {PP}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2016.2591080}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Index Terms-Diffusion weighted imaging, Brain, Connectivity analysis, Dimensionality reduction, Registration, Tractography, Visualization}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01346067/file/Prototype_Paper_Final_PrePrint.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01346067}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{hadjhamou:hal-01329989, AUTHOR = {Mehdi Hadj-Hamou and Marco Lorenzi and Nicholas Ayache and Xavier Pennec}, JOURNAL = {Frontiers in Neuroscience}, MONTH = {June}, OPTNOTE = {}, NUMBER = {236}, PAGES = {18}, PUBLISHER = {Frontiers}, TITLE = {Longitudinal Analysis of Image Time Series with Diffeomorphic Deformations: A Computational Framework Based on Stationary Velocity Fields}, VOLUME = {10}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.3389/fnins.2016.00236}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {non-linear registration, deformation-based morphometry, longitudinal study, diffeomorphism parametrized by stationary velocity fields, statistical analysis, reproducible research}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01329989/file/fnins-10-00236.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01329989}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{khanal:hal-01305755, AUTHOR = {Bishesh Khanal and Marco Lorenzi and Nicholas Ayache and Xavier Pennec}, JOURNAL = {NeuroImage}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {35-52}, PUBLISHER = {Elsevier}, TITLE = {A biophysical model of brain deformation to simulate and analyze longitudinal MRIs of patients with Alzheimer's disease}, VOLUME = {134}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2016.03.061}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {longitudinal modeling, simulation of atrophy, longitudinal MRIs simulation, biophysical model, Alzheimer's disease}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01305755/file/Khanal_2016_NeuroImage_acceptedVersionPreprint.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01305755}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lefolgoc:hal-01378844, AUTHOR = {Le Folgoc, Loïc and Hervé Delingette and Antonio Criminisi and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {December}, OPTNOTE = {}, NUMBER = {99}, OPTPAGES = {}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Quantifying Registration Uncertainty with Sparse Bayesian Modelling}, VOLUME = {PP}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2016.2623608}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {MCMC, Uncertainty Quantification, Registration, Sparse Bayesian Learning, Reversible Jump, Automatic Relevance Determination}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01378844/file/lefolgoc2016quantifying-HAL-manuscript.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01378844}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{le:hal-01324849, AUTHOR = {Matthieu Lê and Hervé Delingette and Jayashree Kalpathy-Cramer and Elizabeth R Gerstner and Tracy Batchelor and Jan Unkelbach and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {April}, OPTNOTE = {}, NUMBER = {10}, PAGES = {2329-2339}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {MRI Based Bayesian Personalization of a Tumor Growth Model}, VOLUME = {35}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2016.2561098}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {bayesian, personalization, Index Terms-tumor growth, glioblastoma, reaction-diffusion, LBM, Monte Carlo}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01324849/file/preprint.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01324849}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{le:hal-01403847, AUTHOR = {Matthieu Lê and Hervé Delingette and Jayashree Kalpathy-Cramer and Elizabeth R Gerstner and Tracy Batchelor and Jan Unkelbach and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {11}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Personalized Radiotherapy Planning Based on a Computational Tumor Growth Model}, OPTVOLUME = {}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2016.2626443}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Index Terms-Radiotherapy planning, computational tu-, mor growth model, personalization, uncertainty, segmentation, glioblastoma}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01403847/file/FINAL%20VERSION.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01403847}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{le:hal-01304646, AUTHOR = {Matthieu Lê and Jan Unkelbach and Nicholas Ayache and Hervé Delingette}, JOURNAL = {Medical Image Analysis}, MONTH = {December}, NOTE = {Accepted for publication to the journal Elsevier Medical Image Analysis}, OPTNUMBER = {}, PAGES = {42-51}, PUBLISHER = {Elsevier}, TITLE = {Sampling Image Segmentations for Uncertainty Quantification}, VOLUME = {34}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2016.04.005}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Gaussian process, brain tumor, uncertainty, radiotherapy planning, Segmentation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01304646/file/mle_preprint.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01304646}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{mangado:hal-01314765, AUTHOR = {Nerea Mangado and Mario Ceresa and Nicolas Duchateau and Hans Martin Kjer and Sergio Vera and Dejea Velardo, Hector and Pavel Mistrik and Rasmus R. Paulsen and Jens Fagertun and Jérôme Noailly and Gemma Piella and Ángel González Ballester, Miguel}, JOURNAL = {Annals of Biomedical Engineering}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {8}, PAGES = {2453-2463}, PUBLISHER = {Springer Verlag}, TITLE = {Automatic model generation framework for computational simulation of cochlear implantation}, VOLUME = {44}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1007/s10439-015-1541-y}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01314765/file/jMangado_ABE_2016_FINALok.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01314765}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{talbot:hal-01338346, AUTHOR = {Hugo Talbot and Federico Spadoni and Christian Duriez and Maxime Sermesant and Stéphane Cotin and Hervé Delingette}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {11-19}, PUBLISHER = {Elsevier}, TITLE = {Interactive Training System for Interventional Electrocardiology Procedures}, VOLUME = {8789}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-12057-7_2}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Endovascular Navigation, Training Simulator, Interactive Simulation, Real-Time Electrophysiology}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01338346/file/Talbot_H.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01338346}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{vemuri:hal-01230752, AUTHOR = {Anant S. Vemuri and Stéphane Nicolau and Adrien Sportes and Jacques Marescaux and Luc Soler and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Biomedical Engineering}, MONTH = {September}, OPTNOTE = {}, NUMBER = {9}, PAGES = {1862-1873}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Inter-Operative Biopsy Site Relocalization in Endoluminal Surgery}, VOLUME = {63}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1109/TBME.2015.2503981}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {video synchronization, Computer assisted intervention, gastro-intestinal (GI) endoscopy, biopsy relocalization, Barrett's Oesophagus, electromagnetic tracking}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01230752/file/TBEDraft_postCorrections_compressed.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01230752}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{verger:hal-01419250, AUTHOR = {Antoine Verger and Yalcin Yagdigul and Axel van Der Gucht and Sylvain Poussier and Eric Guedj and Louis Maillard and Grégoire Malandain and Gabriela Hossu and Renaud Fay and Gilles Karcher and Pierre-Yves Marie}, JOURNAL = {Annals of Nuclear Medicine}, MONTH = {May}, OPTNOTE = {}, NUMBER = {4}, PAGES = {272--278}, PUBLISHER = {Springer Verlag}, TITLE = {Temporal epilepsy lesions may be detected by the voxel-based quantitative analysis of brain FDG-PET images using an original block-matching normalization software}, VOLUME = {30}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1007/s12149-016-1060-4}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Block-matching algorithm, FDG-PET, Mesial temporal lobe epilepsy, Spatial normalization, Statistical parametric mapping}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01419250}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{yamashita:hal-01353372, AUTHOR = {Seigo Yamashita and Hubert Cochet and Frédéric Sacher and Saagar Mahida and Benjamin Berte and Darren Hooks and Jean-Marc Sellal and Al Jefairi, Nora and Antonio Frontera and Yuki Komatsu and Han S Lim and Sana Amraoui and Arnaud Denis and Nicolas Derval and Maxime Sermesant and François Laurent and Mélèze Hocini and Michel Haïssaguerre and Michel Montaudon and Pierre Jais}, JOURNAL = {Circulation. Arrhythmia and electrophysiology}, MONTH = {July}, OPTNOTE = {}, NUMBER = {7}, OPTPAGES = {}, PUBLISHER = {Lippincott Williams & Wilkins}, TITLE = {Impact of New Technologies and Approaches for Post--Myocardial Infarction Ventricular Tachycardia Ablation During Long-Term Follow-Up}, VOLUME = {9}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1161/CIRCEP.116.003901}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Myocardial infarction, Infarction, Heart failure, Catheter ablation, Ventricular tachycardia}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01353372/file/CIRCEP.116.003901.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01353372}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{yamashita:hal-01936715, AUTHOR = {Seigo Yamashita and Frédéric Sacher and Saagar Mahida and Benjamin Berte and Han S Lim and Yuki Komatsu and Sana Amraoui and Arnaud Denis and Nicolas Derval and François Laurent and Maxime Sermesant and Michel Montaudon and Mélèze Hocini and Michel Haïssaguerre and Pierre Jais and Hubert Cochet}, JOURNAL = {Journal of Cardiovascular Electrophysiology}, MONTH = {June}, OPTNOTE = {}, NUMBER = {6}, PAGES = {699 - 708}, PUBLISHER = {Wiley}, TITLE = {Image Integration to Guide Catheter Ablation in Scar-Related Ventricular Tachycardia}, VOLUME = {27}, YEAR = {2016}, OPTABSTRACT = {}, DOI = {10.1111/jce.12963}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Scar-related ventricular tachycardia, Ablation, CMR, MDCT, Imaging}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01936715/file/YAMASHITA_et_al-2016-Journal_of_Cardiovascular_Electrophysiology.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01936715}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{duchateau:hal-01352464, OPTADDRESS = {}, AUTHOR = {Nicolas Duchateau and Gemma Piella and Alejandro Frangi and de Craene, Mathieu}, BOOKTITLE = {Machine learning and medical imaging, 1st Edition}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Guorong Wu and Dinggang Shen and Mert Sabuncu}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {365-382}, PUBLISHER = {Elsevier}, OPTSERIES = {}, TITLE = {Learning pathological deviations from a normal pattern of myocardial motion: Added value for CRT studies?}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2016}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01352464/file/bDuchateau_BookChapter_2016%C2%AD.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01352464}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{alessandrini:hal-01117490, AUTHOR = {Martino Alessandrini and de Craene, Mathieu and Olivier Bernard and Sophie Giffard-Roisin and Pascal Allain and Juergen Weese and Eric Saloux and Hervé Delingette and Maxime Sermesant and Jan d'Hooge}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {7}, PAGES = {1436-1451}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {A Pipeline for the Generation of Realistic 3D Synthetic Echocardiographic Sequences: Methodology and Open-access Database.}, VOLUME = {34}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2015.2396632}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01117490}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{amelot:hal-01081410, AUTHOR = {A Amelot and E Stretton and Hervé Delingette and Nicholas Ayache and S Froelich and E Mandonnet}, JOURNAL = {Journal of Neuro-Oncology}, MONTH = {January}, OPTNOTE = {}, NUMBER = {2}, PAGES = {381-387}, PUBLISHER = {Springer Verlag}, TITLE = {Expert-validated CSF segmentation of MNI atlas enhances accuracy of virtual glioma growth patterns}, VOLUME = {121}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1007/s11060-014-1645-5}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01081410/file/BrainMask_Aymeric_figuresBack6%281%29.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01081410}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{audigier:hal-01146319, AUTHOR = {Chloé Audigier and Tommaso Mansi and Hervé Delingette and Saikiran Rapaka and Viorel Mihalef and Daniel Carnegie and Emad Boctor and Michael Choti and Ali Kamen and Nicholas Ayache and Dorin Comaniciu}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {issue 7}, PAGES = {p 1576-1589}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Efficient Lattice Boltzmann Solver for Patient-Specific Radiofrequency Ablation of Hepatic Tumors}, VOLUME = {34}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2015.2406575}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Radio Frequency ablation, Patient-Specific Simulation, Lattice Boltzmann Method, Heat Transfer, Computational Fluid Dynamics, Therapy Planning}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01146319/file/2013-journal-paper.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01146319}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{benabdallah:hal-02112266, AUTHOR = {Ben Abdallah, Mariem and Jihene Malek and Ahmad Taher Azar and Philippe Montesinos and Hafedh Belmabrouk and Esclarìn Monreal, Julio and Karl Krissian}, JOURNAL = {International Journal of Biomedical Imaging}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1-16}, PUBLISHER = {Hindawi Publishing Corporation}, TITLE = {Automatic Extraction of Blood Vessels in the Retinal Vascular Tree Using Multiscale Medialness}, VOLUME = {2015}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1155/2015/519024}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Distance transform, similarity measures, contours}, URL = {https://hal.archives-ouvertes.fr/hal-02112266}, OPTURL-PUBLISHER = {}, PDF = {https://hal.archives-ouvertes.fr/hal-02112266/file/519024.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{benseghir:hal-01183573, AUTHOR = {Thomas Benseghir and Grégoire Malandain and Régis Vaillant}, JOURNAL = {International Journal of Computer Assisted Radiology and Surgery}, OPTMONTH = {}, NOTE = {Information Processing in Computer-Assisted Interventions (IPCAI) 2015 Special Issue}, NUMBER = {6}, PAGES = {913-923}, PUBLISHER = {Springer Verlag}, TITLE = {A tree-topology preserving pairing for 3D/2D registration}, VOLUME = {10}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1007/s11548-015-1207-0}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Registration, Tree, Coronary Arteries, X-ray, Navigation, Iterative Closest Curve}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01183573/file/Article.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01183573}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cash:hal-01203573, AUTHOR = {David M. Cash and Chris Frost and Leonardo O. Iheme and Devrim Ünay and Melek Kandemir and Jurgen Fripp and Olivier Salvado and Pierrick Bourgeat and Martin Reuter and Bruce Fischl and Marco Lorenzi and Giovanni B. Frisoni and Xavier Pennec and Ronald K. Pierson and Jeffrey L. Gunter and Matthew L. Senjem and Clifford R. Jack and Nicolas Guizard and Vladimir S. Fonov and D. Louis Collins and Marc Modat and Jorge M. Cardoso and Kelvin K. Leung and Hongzhi Wang and Sandhitsu R. Das and Paul A. Yushkevich and Ian B. Malone and Nick C. Fox and Jonathan M. Schott and Sebastien Ourselin}, JOURNAL = {NeuroImage}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {149--164}, PUBLISHER = {Elsevier}, TITLE = {Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge}, VOLUME = {123}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2015.07.087}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01203573/file/NIMG_Challenge_Final.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01203573}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cochet:hal-01244219, AUTHOR = {Hubert Cochet and Arnaud Denis and Yuki Komatsu and Amir S. Jadidi and Aït Ali, Tassadit and Frédéric Sacher and Nicolas Derval and Jatin Relan and Maxime Sermesant and Olivier Corneloup and Mélèze Hocini and Michel Haïssaguerre and François Laurent and Michel Montaudon and Pierre Jaïs}, JOURNAL = {Radiology}, MONTH = {June}, OPTNOTE = {}, NUMBER = {3}, PAGES = {683-91}, PUBLISHER = {Radiological Society of North America}, TITLE = {Automated Quantification of Right Ventricular Fat at Contrast-enhanced Cardiac Multidetector CT in Arrhythmogenic Right Ventricular Cardiomyopathy}, VOLUME = {275}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1148/radiol.14141140}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01244219/file/radiol.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01244219}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cordier:hal-01241480, AUTHOR = {Nicolas Cordier and Hervé Delingette and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {December}, OPTNOTE = {}, NUMBER = {4}, PAGES = {11}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {A patch-based approach for the segmentation of pathologies: Application to glioma labelling}, VOLUME = {35}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2015.2508150}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {patch-based, multi-atlas, glioma, segmentation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01241480/file/Cordier-TMI-2015-preprint.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01241480}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lorenzi:hal-01145728, AUTHOR = {Marco Lorenzi and Nicholas Ayache and Xavier Pennec}, JOURNAL = {NeuroImage}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {224--234}, PUBLISHER = {Elsevier}, TITLE = {Regional flux analysis for discovering and quantifying anatomical changes: An application to the brain morphometry in Alzheimer's disease}, VOLUME = {115}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2015.04.051}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01145728/file/Paper_flux_2nd_version.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01145728}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lorenzi:hal-01061017, AUTHOR = {Marco Lorenzi and Xavier Pennec and Giovanni B. Frisoni and Nicholas Ayache}, JOURNAL = {Neurobiology of Aging}, MONTH = {January}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {S42-S52}, PUBLISHER = {Elsevier}, TITLE = {Disentangling normal aging from Alzheimer's disease in structural magnetic resonance images}, VOLUME = {36}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1016/j.neurobiolaging.2014.07.046}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01061017/file/Lorenzi-LongProjection-NBOA-Third.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01061017}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{margeta:hal-01162880, AUTHOR = {Jan Margeta and Antonio Criminisi and Cabrera Lozoya, Rocio and Daniel C. Lee and Nicholas Ayache}, JOURNAL = {Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization}, MONTH = {August}, NOTE = {This is an electronic version of an article published inComputer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualizationon 13 August 2015, by Taylor & Francis, DOI: 10.1080/21681163.2015.1061448.Available online at: http://www.tandfonline.com/10.1080/21681163.2015.1061448.}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Taylor & Francis}, TITLE = {Fine-tuned convolutional neural nets for cardiac MRI acquisition plane recognition}, OPTVOLUME = {}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1080/21681163.2015.1061448}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Transfer learning, Fine-tuning, SSFP, Planes of acquisition, Machine learning, Cardiac magnetic resonance, Convolutional neural networks, Magnetic resonance, Cardiac imaging, Deep learning}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01162880v2/file/author_version.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01162880}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{mcleod:hal-01205342, AUTHOR = {Kristin Mcleod and Maxime Sermesant and Philipp Beerbaum and Xavier Pennec}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {July}, OPTNOTE = {}, NUMBER = {7}, PAGES = {1562--1675}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Spatio-Temporal Tensor Decomposition of a Polyaffine Motion Model for a Better Analysis of Pathological Left Ventricular Dynamics}, VOLUME = {34}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2015.2405579}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {cardiac modelling, atlas, non-rigid image registration, motion tracking, population statistics, tensor decomposition, spatio-temporal alignment, Tetralogy of Fallot}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01205342/file/McLeod_PolyaffineHeartMeanMotion.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01205342}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{menze:hal-01230846, AUTHOR = {Bjoern H Menze and van Leemput, Koen and Danial Lashkari and Tammy Riklin-Raviv and Ezequiel Geremia and Esther Alberts and Philipp Gruber and Susanne Wegener and Marc-André Weber and Gabor Szekely and Nicholas Ayache and Polina Golland}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {November}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {A generative probabilistic model and discriminative extensions for brain lesion segmentation -- with application to tumor and stroke}, OPTVOLUME = {}, YEAR = {2015}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01230846/file/manuscript.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01230846}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{miolane:hal-01133922, AUTHOR = {Nina Miolane and Xavier Pennec}, JOURNAL = {Entropy}, MONTH = {April}, OPTNOTE = {}, NUMBER = {4}, PAGES = {1850-1881}, PUBLISHER = {MDPI}, TITLE = {Computing Bi-Invariant Pseudo-Metrics on Lie Groups for Consistent Statistics}, VOLUME = {17}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.3390/e17041850}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01133922/file/entropy-17-01850.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01133922}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{tobongomez:hal-01260607, AUTHOR = {Catalina Tobon-Gomez and Arjan J. Geers and Jochen Peters and Jürgen Weese and Karen Pinto and Rashed Karim and Mohammed Ammar and Abdelaziz Daoudi and Jan Margeta and Zulma Sandoval and Birgit Stender and Yefeng Zheng and Maria A Zuluaga and Julian Betancur and Nicholas Ayache and Amine Chikh, Mohammed and Jean-Louis Dillenseger and Michael B. Kelm and Saïd Mahmoudi and Sébastien Ourselin and Alexander Schlaefer and Tobias Schaeffter and Reza Razavi and Kawal S. Rhode}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {July}, OPTNOTE = {}, NUMBER = {7}, PAGES = {1460--1473}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Benchmark for Algorithms Segmenting the Left Atrium From 3D CT and MRI Datasets}, VOLUME = {34}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2015.2398818}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Benchmark testing, automatic segmentations, atrial fibrillation ablation guidance, anatomical regions, 3D CT datasets, Left Atrial Segmentation Challenge, left atrial surface, ground truth, image segmentation, LA appendage trunk, LASC, LA segmentation, left atrial anatomy, left atrium, Magnetic Resonance Imaging, Measurement, medical image processing, MRI datasets, multiple input data, physiological models, pulmonary vein proximal sections, region growing approach, Shape, standardisation framework, statistical analysis, statistical models, biomedical MRI, biophysical modelling, blood vessels, cardiovascular disease, cardiovascular system, Computed Tomography, computerised tomography, diseases, Educational institutions, electroanatomical mapping systems, evaluation code, fibrosis quantification}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://univ-rennes.hal.science/hal-01260607/file/2015_tobongomez_lasc.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://univ-rennes.hal.science/hal-01260607}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{vandersteen:hal-01238195, AUTHOR = {Clair Vandersteen and Thomas Demarcy and Coralie Roger and Eric Fontas and Charles Raffaelli and Nicholas Ayache and Hervé Delingette and Nicolas Guevara}, JOURNAL = {European Archives of Oto-Rhino-Laryngology}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1-7}, PUBLISHER = {Springer Verlag}, TITLE = {Impact of the surgical experience on cochleostomy location: a comparative temporal bone study between endaural and posterior tympanotomy approaches for cochlear implantation}, OPTVOLUME = {}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1007/s00405-015-3792-5}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cochlear implantation, Cochleostomy, Minimally invasive surgery, Endaural approach, Learning skills, Surgery resident, Compétences d'apprentissage, Voie endaurale, Chirurgie mini-invasive, Cochléostomie, Implantation cochléaire, Interne en chirurgie}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01238195/file/PROOF.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01238195}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{wong:hal-01095725, AUTHOR = {Ken C.L. Wong and Maxime Sermesant and Kawal Rhode and Matthew Ginks and Aldo Rinaldi, C. and Reza Razavi and Hervé Delingette and Nicholas Ayache}, JOURNAL = {Journal of the mechanical behavior of biomedical materials}, MONTH = {March}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {35-52}, PUBLISHER = {Elsevier}, TITLE = {Velocity-based cardiac contractility personalization from images using derivative-free optimization}, VOLUME = {43}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1016/j.jmbbm.2014.12.002}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {parameter estimation, model personalization, derivative-free optimization, Cardiac contractility, cardiac electromechanical model}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01095725/file/ActiveSubplex_final.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01095725}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{delingette:hal-01250442, OPTADDRESS = {}, AUTHOR = {Hervé Delingette and Nicholas Ayache}, BOOKTITLE = {Handbook of Biomedical Imaging: Methodologies and Clinical Research}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = { Paragios and Nikos and Duncan and Jim and Ayache and Nicholas}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {169-182}, PUBLISHER = {Springer US}, OPTSERIES = {}, TITLE = {Building Patient-Specific Physical and Physiological Computational Models from Medical Images}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1007/978-0-387-09749-7_9}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01250442}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{pennec:inria-00616201, OPTADDRESS = {}, AUTHOR = {Xavier Pennec and Pierre Fillard}, BOOKTITLE = {Handbook of Biomedical Imaging: Methodologies and Clinical Research}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = { Paragios and Nikos and Duncan and Jim and Ayache and Nicholas}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {147-168}, PUBLISHER = {Springer}, OPTSERIES = {}, TITLE = {Statistical Computing on Non-Linear Spaces for Computational Anatomy}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2015}, OPTABSTRACT = {}, DOI = {10.1007/978-0-387-09749-7_8}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/inria-00616201/file/ComputationalAnatomy.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/inria-00616201}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{guibert:hal-00874545, AUTHOR = {Romain Guibert and Kristin Mcleod and Alfonso Caiazzo and Tommaso Mansi and Miguel Angel Fernández and Maxime Sermesant and Xavier Pennec and Irene Vignon-Clementel and Younes Boudjemline and Jean-Frédéric Gerbeau}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {63-82}, PUBLISHER = {Elsevier}, TITLE = {Group-wise Construction of Reduced Models for Understanding and Characterization of Pulmonary Blood Flows from Medical Images}, VOLUME = {18}, YEAR = {2014}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2013.09.003}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Computational fluid dynamics, Pulmonary artery, Tetralogy of Fallot, Atlas construction, Proper orthogonal decomposition}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00874545/file/MEDIA_Guibert_McLeod_2013.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00874545}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{iannessi:hal-01364012, AUTHOR = {Antoine Iannessi and Pierre Yves Marcy and Olivier Clatz and Nicholas Ayache and Pierre Fillard}, JOURNAL = {Radiographics}, MONTH = {July}, OPTNOTE = {}, NUMBER = {4}, OPTPAGES = {}, PUBLISHER = {Radiological Society of North America (RSNA)}, TITLE = {Touchless User Interface for Intraoperative Image Control: Almost There}, VOLUME = {34}, YEAR = {2014}, OPTABSTRACT = {}, DOI = {10.1148/rg.344135158}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01364012}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{iannessi:hal-01364021, AUTHOR = {A Iannessi and P.-y Marcy and O Clatz and P Fillard and N Ayache}, JOURNAL = {Diagnostic and Interventional Imaging}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {Touchless intra-operative display for interventional radiologist}, OPTVOLUME = {}, YEAR = {2014}, OPTABSTRACT = {}, DOI = {10.1016/j.diii.2013.09.007}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {User-computer interface, Gesture, CT-scan, Interventional radiology, Sterility}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01364021/file/1-s2.0-S2211568413003045-main.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01364021}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{komatsu:hal-01095772, AUTHOR = {Y. Komatsu and A. Jadidi and F. Sacher and A. Denis and M. Daly and N. Derval and A. Shah and H. Lehrmann and C.-I. Park and R. Weber and T. Arentz and G. Pache and Maxime Sermesant and Nicholas Ayache and J. Relan and M. Montaudon and F. Laurent and M. Hocini and M. Haissaguerre and P. Jais and Hubert Cochet}, JOURNAL = {Journal of the American Heart Association}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {10}, PUBLISHER = {Wiley-Blackwell}, TITLE = {Relationship Between MDCT-Imaged Myocardial Fat and Ventricular Tachycardia Substrate in Arrhythmogenic Right Ventricular Cardiomyopathy}, VOLUME = {3}, YEAR = {2014}, OPTABSTRACT = {}, DOI = {10.1161/JAHA.114.000935}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01095772/file/vkIwAd-J%20Am%20Heart%20Assoc-2014-Komatsu-.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01095772}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lombaert:hal-00979616, AUTHOR = {Herve Lombaert and Leo Grady and Xavier Pennec and Nicholas Ayache and Farida Cheriet}, JOURNAL = {International Journal of Computer Vision}, MONTH = {May}, OPTNOTE = {}, NUMBER = {3}, PAGES = {254-271}, PUBLISHER = {Springer Verlag}, TITLE = {Spectral Log-Demons: Diffeomorphic Image Registration with Very Large Deformations}, VOLUME = {107}, YEAR = {2014}, OPTABSTRACT = {}, DOI = {10.1007/s11263-013-0681-5}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00979616/file/SpectralDemons-IJCV2013.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00979616}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{menze:hal-00935640, AUTHOR = {Bjoern Menze and Andras Jakab and Stefan Bauer and Jayashree Kalpathy-Cramer and Keyvan Farahani and Justin Kirby and Yuliya Burren and Nicole Porz and Johannes Slotboom and Roland Wiest and Levente Lanczi and Elisabeth Gerstner and Marc-Andre Weber and Tal Arbel and Brian Avants and Nicholas Ayache and Patricia Buendia and Louis Collins and Nicolas Cordier and Jason Corso and Antonio Criminisi and Tilak Das and Hervé Delingette and Cagatay Demiralp and Christopher Durst and Michel Dojat and Senan Doyle and Joana Festa and Florence Forbes and Ezequiel Geremia and Ben Glocker and Polina Golland and Xiaotao Guo and Andac Hamamci and Khan Iftekharuddin and Raj Jena and Nigel John and Ender Konukoglu and Danial Lashkari and Antonio Mariz, Jose and Raphael Meier and Sergio Pereira and Doina Precup and S. J. Price and Tammy Riklin-Raviv and Syed Reza and Michael Ryan and Lawrence Schwartz and Hoo-Chang Shin and Jamie Shotton and Carlos Silva and Nuno Sousa and Nagesh Subbanna and Gabor Szekely and Thomas Taylor and Owen Thomas and Nicholas Tustison and Gozde Unal and Flor Vasseur and Max Wintermark and Hye Ye, Dong and Liang Zhao and Binsheng Zhao and Darko Zikic and Marcel Prastawa and Mauricio Reyes and van Leemput, Koen}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {October}, OPTNOTE = {}, NUMBER = {10}, PAGES = {1993-2024}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)}, VOLUME = {34}, YEAR = {2014}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2014.2377694}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00935640v2/file/menze_brats.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00935640}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{porras:hal-01095151, AUTHOR = {Antonio Porras and Martino Alessandrini and de Craene, Mathieu and Nicolas Duchateau and Marta Sitges and Bart Bijnens and Hervé Delingette and Maxime Sermesant and Jan d'Hooge and Alejandro Frangi and Gemma Piella}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {June}, OPTNOTE = {}, NUMBER = {11}, PAGES = {2098 - 2106}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Improved Myocardial Motion Estimation Combining Tissue Doppler and B-Mode Echocardiographic Images}, VOLUME = {33}, YEAR = {2014}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2014.2331392}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Echocardiography, free form deformation (FFD), image registration, motion estimation}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01095151}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{prakosa:hal-00858891, AUTHOR = {Adityo Prakosa and Maxime Sermesant and Pascal Allain and Nicolas Villain and Christopher Aldo Rinaldi and Kawal Rhode and Reza Razavi and Hervé Delingette and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Biomedical Engineering}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {235 - 245}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Cardiac Electrophysiological Activation Pattern Estimation from Images using a Patient-Specific Database of Synthetic Image Sequences}, VOLUME = {61}, YEAR = {2014}, OPTABSTRACT = {}, DOI = {10.1109/TBME.2013.2281619}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00858891/file/Journal_2_Adityo_Revision_Final_6.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00858891}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{suinesiaputra:hal-00857223, AUTHOR = {Avan Suinesiaputra and Brett Cowan and Ahmed O. Al-Agamy and Mustafa A. Alattar and Nicholas Ayache and Ahmed S. Fahmy and Ayman M. Khalifa and Pau Medrano-Gracia and Marie-Pierre Jolly and Alan H. Kadish and Daniel C. Lee and Jan Margeta and Simon K. Warfield and Alistair Young}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {50-62}, PUBLISHER = {Elsevier}, TITLE = {A Collaborative Resource to Build Consensus for Automated Left Ventricular Segmentation of Cardiac MR Images}, VOLUME = {18}, YEAR = {2014}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2013.09.001}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00857223}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{tarabalka:hal-01052543, AUTHOR = {Yuliya Tarabalka and Guillaume Charpiat and Ludovic Brucker and Bjoern Menze}, JOURNAL = {IEEE Transactions on Image Processing}, MONTH = {September}, OPTNOTE = {}, NUMBER = {9}, PAGES = {3829-3840}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Spatio-Temporal Video Segmentation with Shape Growth or Shrinkage Constraint}, VOLUME = {23}, YEAR = {2014}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01052543/file/2014_IEEETIP_Tarabalka.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01052543}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{frangi:hal-01016455, OPTADDRESS = {}, AUTHOR = {A. Frangi and Denis Friboulet and Nicholas Ayache and H. Delingette and T. Glatard and C. Hoogendoorn and L. Humbert and K. Lekadir and I. Larrabide and Y. Martelli and F. Peyrin and X. Planes and Maxime Sermesant and M.C. Villa-Uriol and T. Whitmarsh and D. Atkinson}, BOOKTITLE = {Computational Biomedicine}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Peter Coveney and Vanessa Diaz and Peter Hunter and Marco Viceconti}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {59 - 82}, PUBLISHER = {Oxford University Press}, OPTSERIES = {}, TITLE = {Image Based Modelling}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2014}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01016455}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{lorenzi:hal-00933229, OPTADDRESS = {}, AUTHOR = {Marco Lorenzi and Xavier Pennec}, BOOKTITLE = {Geometric Theory of Information}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Frank Nielsen}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {243-271}, PUBLISHER = {Springer}, SERIES = {Signals and Communication Technology}, TITLE = {Discrete Ladders for Parallel Transport in Transformation Groups with an Affine Connection Structure}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2014}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-05317-2_9}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00933229/file/GSI-BookChapter.pdf}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00933229}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{breuilly:hal-00799381, AUTHOR = {Marine Breuilly and Grégoire Malandain and Julien Guglielmi and Robert Marsault and Thierry Pourcher and Philippe R. Franken and Jacques Darcourt}, JOURNAL = {Physics in Medicine and Biology}, MONTH = {April}, OPTNOTE = {}, NUMBER = {8}, PAGES = {2657-2674}, PUBLISHER = {IOP Publishing}, TITLE = {Amplitude-based data selection for optimal retrospective reconstruction in micro-SPECT}, VOLUME = {58}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1088/0031-9155/58/8/2657}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00799381/file/BREUILLY_PMB_2013.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00799381}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{chung:hal-00813880, AUTHOR = {François Chung and Hervé Delingette}, JOURNAL = {Computer Vision and Image Understanding}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {6}, PAGES = {705-717}, PUBLISHER = {Elsevier}, TITLE = {Regional Appearance Modeling based on the Clustering of Intensity Profiles}, VOLUME = {117}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1016/j.cviu.2013.01.011}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00813880/file/Chung-CVIU-2013.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00813880}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cochet:hal-00813820, AUTHOR = {Hubert Cochet and Y. Komatsu and F. Sacher and A. Jadidi and D. Scherr and M. Riffaud and N. Derval and A. Shah and L. Roten and P. Pascale and Jatin Relan and Maxime Sermesant and Nicholas Ayache and M. Montaudon and F. Laurent and M. Hocini and M. Haïssaguerre and Pierre Jaïs}, JOURNAL = {Journal of Cardiovascular Electrophysiology}, MONTH = {April}, OPTNOTE = {}, NUMBER = {4}, PAGES = {419-426}, PUBLISHER = {Wiley}, TITLE = {Integration of Merged Delayed-Enhanced Magnetic Resonance Imaging and Multi-Detector Computed Tomography for the Guidance of Ventricular Tachycardia Ablation: A Pilot Study}, VOLUME = {24}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1111/jce.12052}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00813820}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{durrleman:hal-00813825, AUTHOR = {Stanley Durrleman and Xavier Pennec and Alain Trouvé and José Braga and Guido Gerig and Nicholas Ayache}, JOURNAL = {International Journal of Computer Vision}, MONTH = {May}, OPTNOTE = {}, NUMBER = {1}, PAGES = {22-59}, PUBLISHER = {Springer Verlag}, TITLE = {Toward a Comprehensive Framework for the Spatiotemporal Statistical Analysis of Longitudinal Shape Data}, VOLUME = {103}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1007/s11263-012-0592-x}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00813825/file/Durrleman_IJCV_2012_Longitudinal.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00813825}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{frangi:hal-01355239, AUTHOR = {Alejandro F. Frangi and D. Rod Hose and Peter J. Hunter and Nicholas Ayache and Dana Brooks}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {January}, OPTNOTE = {}, NUMBER = {1}, PAGES = {1-7}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Guest Editorial Special Issue on Medical Imaging and Image Computing in Computational Physiology}, VOLUME = {32}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2012.2234320}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01355239/file/IEEE_TMI_MIinCP_v7.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01355239}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{jadidi:hal-00855926, AUTHOR = {Amir S. Jadidi and Hubert Cochet and Ashok J. Shah and Steven J. Kim and Edward Duncan and Shinsuke Miyazaki and Maxime Sermesant and Heiko Lehrmann and Matthieu Lederlin and Nick Linton and Andrei Forclaz and Isabelle Nault and Lena Rivard and Matthew Wright and Xingpeng Liu and Daniel Scherr and Stephen B. Wilton and Laurent Roten and Patrizio Pascale and Nicolas Derval and Frédéric Sacher and Sebastian Knecht and Cornelius Keyl and Mélèze Hocini and Michel Montaudon and François Laurent and Michel Haïssaguerre and Pierre Jaïs}, JOURNAL = {Journal of the American College of Cardiology}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {9}, PAGES = {802-812}, PUBLISHER = {Elsevier}, TITLE = {Inverse relationship between fractionated electrograms and atrial fibrosis in persistent atrial fibrillation: combined magnetic resonance imaging and high-density mapping}, VOLUME = {62}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1016/j.jacc.2013.03.081}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00855926/file/93795_1_merged_1363700367.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00855926}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{komatsu:hal-00855932, AUTHOR = {Yuki Komatsu and Hubert Cochet and Amir Jadidi and Frédéric Sacher and Ashok Shah and Nicolas Derval and Daniel Scherr and Patrizio Pascale and Laurent Roten and Arnaud Denis and Khaled Ramoul and Shinsuke Miyazaki and Matthew Daly and Matthieu Riffaud and Maxime Sermesant and Jatin Relan and Nicholas Ayache and Steven Kim and Michel Montaudon and François Laurent and Mélèze Hocini and Michel Haïssaguerre and Pierre Jaïs}, JOURNAL = {Circulation. Arrhythmia and electrophysiology}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {342-350}, PUBLISHER = {Lippincott Williams & Wilkins}, TITLE = {Regional myocardial wall thinning at multidetector computed tomography correlates to arrhythmogenic substrate in postinfarction ventricular tachycardia: assessment of structural and electrical substrate}, VOLUME = {6}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1161/CIRCEP.112.000191}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00855932}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{leonardi:hal-00813831, AUTHOR = {Benedetta Leonardi and Andrew Taylor and Tommaso Mansi and Ingmar Voigt and Maxime Sermesant and Xavier Pennec and Nicholas Ayache and Younes Boudjemline and Giacomo Pongiglione}, JOURNAL = {European Heart Journal - Cardiovascular Imaging}, MONTH = {April}, OPTNOTE = {}, NUMBER = {4}, PAGES = {381-6}, PUBLISHER = {Oxford UP}, TITLE = {Computational modelling of the right ventricle in repaired tetralogy of Fallot: can it provide insight into patient treatment?}, VOLUME = {14}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1093/ehjci/jes239}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00813831/file/EHJCI-2013.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00813831}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lorenzi:hal-00819895, AUTHOR = {Marco Lorenzi and Nicholas Ayache and Giovanni B. Frisoni and Xavier Pennec}, JOURNAL = {NeuroImage}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {470-483}, PUBLISHER = {Elsevier}, TITLE = {LCC-Demons: a robust and accurate symmetric diffeomorphic registration algorithm}, VOLUME = {81}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2013.04.114}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00819895v2/file/Lorenzi-LCC2012.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00819895}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lorenzi:hal-00870489, AUTHOR = {Marco Lorenzi and Xavier Pennec}, JOURNAL = {Journal of Mathematical Imaging and Vision}, MONTH = {October}, OPTNOTE = {}, NUMBER = {1-2}, PAGES = {5-17}, PUBLISHER = {Springer Verlag}, TITLE = {Efficient Parallel Transport of Deformations in Time Series of Images: from Schild's to Pole Ladder}, VOLUME = {50}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1007/s10851-013-0470-3}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00870489/file/Lorenzi-PoleLadder2013.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00870489}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lorenzi:hal-00813835, AUTHOR = {Marco Lorenzi and Xavier Pennec}, JOURNAL = {International Journal of Computer Vision}, MONTH = {November}, OPTNOTE = {}, NUMBER = {2}, PAGES = {111-127}, PUBLISHER = {Springer Verlag}, TITLE = {Geodesics, Parallel Transport & One-parameter Subgroups for Diffeomorphic Image Registration}, VOLUME = {105}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1007/s11263-012-0598-4}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00813835/file/Lorenzi-IJCV2012.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00813835}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{marchesseau:hal-00819806, AUTHOR = {Stéphanie Marchesseau and Hervé Delingette and Maxime Sermesant and Cabrera Lozoya, Rocio and Catalina Tobon-Gomez and Philippe Moireau and Figueras I Ventura, Rosa Maria and Karim Lekadir and Alfredo Hernandez and Mireille Garreau and Erwan Donal and Christophe Leclercq and Simon G. Duckett and Kawal Rhode and Christopher Aldo Rinaldi and Alejandro F. Frangi and Reza Razavi and Dominique Chapelle and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {May}, OPTNOTE = {}, NUMBER = {7}, PAGES = {816-829}, PUBLISHER = {Elsevier}, TITLE = {Personalization of a Cardiac Electromechanical Model using Reduced Order Unscented Kalman Filtering from Regional Volumes}, VOLUME = {17}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2013.04.012}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00819806/file/Finalmanuscript.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00819806}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{marchesseau:hal-00813849, AUTHOR = {Stéphanie Marchesseau and Hervé Delingette and Maxime Sermesant and Michel Sorine and Kawal Rhode and Simon G. Duckett and Christopher Aldo Rinaldi and Reza Razavi and Nicholas Ayache}, JOURNAL = {Journal of the mechanical behavior of biomedical materials}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {259-271}, PUBLISHER = {Elsevier}, TITLE = {Preliminary Specificity Study of the Bestel-Clément-Sorine Electromechanical Model of the Heart using Parameter Calibration from Medical Images}, VOLUME = {20}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1016/j.jmbbm.2012.11.021}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00813849/file/mbioMarchesseau2012.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00813849}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{menze:hal-00917886, AUTHOR = {Bjoern Menze and Georg Langs and Zhuowen Tu and Antonio Criminisi}, JOURNAL = {Medical Image Analysis}, MONTH = {December}, OPTNOTE = {}, NUMBER = {8}, PAGES = {1282}, PUBLISHER = {Elsevier}, TITLE = {Whole-body anatomy localization via classification and regression forests}, VOLUME = {17}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2013.09.005}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00917886}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{odening:hal-00855929, AUTHOR = {Katja E. Odening and Bernd A. Jung and Corinna N. Lang and Cabrera Lozoya, Rocio and David Ziupa and Marius Menza and Jatin Relan and Gerlind Franke and Perez Feliz, Stefanie and Gideon Koren and Manfred Zehender and Christoph Bode and Michael Brunner and Maxime Sermesant and Daniela Föll}, JOURNAL = {Heart Rhythm}, OPTMONTH = {}, NOTE = {Focus Issue: Sudden Cardiac Death}, NUMBER = {10}, PAGES = {1533-1541}, PUBLISHER = {Elsevier}, TITLE = {Spatial Correlation of Action Potential Duration and Diastolic Dysfunction in Transgenic and Drug-induced LQT2 Rabbits}, VOLUME = {10}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1016/j.hrthm.2013.07.038}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00855929}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{pennec:hal-00858908, AUTHOR = {Xavier Pennec and Sarang Joshi and Mads Nielsen}, JOURNAL = {International Journal of Computer Vision}, MONTH = {August}, OPTNOTE = {}, NUMBER = {2}, PAGES = {109-110}, PUBLISHER = {Springer Verlag}, TITLE = {Mathematical Methods for Medical Imaging}, VOLUME = {105}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1007/s11263-013-0650-z}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00858908}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{prakosa:hal-00813861, AUTHOR = {A. Prakosa and Maxime Sermesant and H. Delingette and S. Marchesseau and E. Saloux and Pascal Allain and N. Villain and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {January}, OPTNOTE = {}, NUMBER = {1}, PAGES = {99-109}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {Generation of Synthetic but Visually Realistic Time Series of Cardiac Images Combining a Biophysical Model and Clinical Images}, VOLUME = {32}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2012.2220375}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00813861/file/PrakosaTMI2012.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00813861}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{rekik:hal-00813881, AUTHOR = {Islem Rekik and Stéphanie Allassonnière and Olivier Clatz and Ezequiel Geremia and Erin Stretton and Hervé Delingette and Nicholas Ayache}, JOURNAL = {Computer Vision and Image Understanding}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {238--249}, PUBLISHER = {Elsevier}, TITLE = {Tumor Growth Parameters Estimation and Source Localization From a Unique Time Point: Application to Low-grade Gliomas}, VOLUME = {117}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1016/j.cviu.2012.11.001}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00813881/file/Rekik-CVIU-2013.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00813881}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{sommer:hal-00813868, AUTHOR = {Stefan Sommer and François Lauze and Mads Nielsen and Xavier Pennec}, JOURNAL = {Journal of Mathematical Imaging and Vision}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {292-308}, PUBLISHER = {Springer Verlag}, TITLE = {Sparse Multi-Scale Diffeomorphic Registration: the Kernel Bundle Framework}, VOLUME = {46}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1007/s10851-012-0409-0}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00813868/file/Sommer_JMIV2013.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00813868}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{sommer:hal-00813869, AUTHOR = {Stefan Sommer and Mads Nielsen and Sune Darkner and Xavier Pennec}, JOURNAL = {SIAM Journal on Imaging Sciences}, MONTH = {February}, OPTNOTE = {}, NUMBER = {1}, PAGES = {341-367}, PUBLISHER = {Society for Industrial and Applied Mathematics}, TITLE = {Higher-order momentum distributions and locally affine LDDMM registration}, VOLUME = {6}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1137/110859002}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00813869}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{talbot:hal-00797354, AUTHOR = {Hugo Talbot and Stéphanie Marchesseau and Christian Duriez and Maxime Sermesant and Stéphane Cotin and Hervé Delingette}, JOURNAL = {Interface Focus}, MONTH = {April}, OPTNOTE = {}, NUMBER = {2}, PAGES = {4}, PUBLISHER = {Royal Society publishing}, SERIES = {The Virtual Physiological Human: Integrative Approaches to Computational Biomedicine}, TITLE = {Towards an Interactive Electromechanical Model of the Heart}, VOLUME = {3}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1098/rsfs.2012.0091}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = { electrophysiology cardiac mechanics training simulation interactive SOFA framework}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00797354/file/Interface_Focus-2013-Talbot.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00797354}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{tobongomez:hal-00840037, AUTHOR = {Catalina Tobon-Gomez and Nicolas Duchateau and Rafael Sebastian and Stéphanie Marchesseau and Oscar Camara and Erwan Donal and de Craene, Mathieu and Ali Pashaei and Jatin Relan and Martin Steghofer and Pablo Lamata and Hervé Delingette and Simon G. Duckett and Mireille Garreau and Alfredo Hernandez and Kawal S. Rhode and Maxime Sermesant and Nicholas Ayache and Christophe Leclercq and Reza Razavi and Nicolas P. Smith and Alejandro F. Frangi}, JOURNAL = {Medical and Biological Engineering and Computing}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1--16}, PUBLISHER = {Springer Verlag}, TITLE = {Understanding the mechanisms amenable to CRT response: from pre-operative multimodal image data to patient-specific computational models}, OPTVOLUME = {}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1007/s11517-013-1044-7}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00840037}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{tobongomez:hal-00855928, AUTHOR = {Catalina Tobon-Gomez and de Craene, Mathieu and Kristin Mcleod and Lennart Tautz and Wenzhe Shi and Anja Hennemuth and Adityo Prakosa and Hengui Wang and Gerald Carr-White and Sergio Kapetanakis and Albert Lutz and Vernon Rasche and Tobias Schaeffter and Constantin Butakoff and Oskar Friman and Tommaso Mansi and Maxime Sermesant and Xiahai Zhuang and Sébastien Ourselin and Hans Otto Peitgen and Xavier Pennec and Reza Razavi and Daniel Rueckert and Alejandro F. Frangi and Kawal Rhode}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {6}, PAGES = {632-648}, PUBLISHER = {Elsevier}, TITLE = {Benchmarking framework for myocardial tracking and deformation algorithms: an open access database}, VOLUME = {17}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2013.03.008}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00855928/file/tobon-gomez12a_v2.0.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00855928}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{toussaint:hal-00845062, AUTHOR = {Nicolas Toussaint and Christian T. Stoeck and Tobias Schaeffter and Sebastian Kozerke and Maxime Sermesant and Philip G. Batchelor}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, NOTE = {In press}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {In vivo human cardiac fibre architecture estimation using shape-based diffusion tensor processing}, OPTVOLUME = {}, YEAR = {2013}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Diffusion tensor imaging}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00845062}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{unkelbach:hal-00917846, AUTHOR = {Jan Unkelbach and Bjoern Menze and Ender Konukoglu and Florian Dittmann and Nicholas Ayache and Helen Shi}, JOURNAL = {Physics in Medicine and Biology}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {IOP Publishing}, TITLE = {Radiotherapy planning for glioblastoma based on a tumor growth model: implications for spatial dose redistribution}, OPTVOLUME = {}, YEAR = {2013}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00917846/file/unkelbach_13_dose.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00917846}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{unkelbach:hal-00917869, AUTHOR = {Jan Unkelbach and Bjoern Menze and Ender Konukoglu and Florian Dittmann and Matthieu Le and Nicholas Ayache and Helen Shi}, JOURNAL = {Physics in Medicine and Biology}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {IOP Publishing}, TITLE = {Radiotherapy planning for glioblastoma based on a tumor growth model: improving target volume delineation}, OPTVOLUME = {}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1088/0031-9155/59/3/747}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00917869v2/file/Unkelbach-Physics-v2.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00917869}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{vidalmigallon:inserm-00855958, AUTHOR = {Irina Vidal-Migallón and Olivier Commowick and Xavier Pennec and Julien Dauguet and Tom Vercauteren}, JOURNAL = {Insight Journal}, MONTH = {July}, NOTE = {Open peer-review journal. Open code / open data.}, OPTNUMBER = {}, PAGES = {16}, PUBLISHER = {Insight Software Consortium}, TITLE = {GPU & CPU implementation of Young - Van Vliet's Recursive Gaussian Smoothing Filter}, OPTVOLUME = {}, YEAR = {2013}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {GPU, OpenCL, Recursive Gaussian Smoothing}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inserm.hal.science/inserm-00855958/file/IJ_896_3_InsightJournal_YVV.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inserm.hal.science/inserm-00855958}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{weese:hal-00851239, AUTHOR = {Jürgen Weese and Nicholas Ayache and Nicolas P. Smith}, JOURNAL = {Medical and Biological Engineering and Computing}, OPTMONTH = {}, NOTE = {Editorial}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Springer Verlag}, TITLE = {Personalized Cardiac Modeling and Simulations in euHeart}, OPTVOLUME = {}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1007/s11517-013-1103-0}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00851239}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{decraene:hal-00840039, AUTHOR = {de Craene, Mathieu and Stéphanie Marchesseau and Brecht Heyde and Hang Gao and M. Alessandrini and Olivier Bernard and Gemma Piella and Antonio Porras and Lennart Tautz and Anja Hennemuth and Adityo Prakosa and Hervé Liebgott and Oudom Somphone and Pascal Allain and S. Makram Ebeid and Hervé Delingette and Maxime Sermesant and Jan d'Hooge and Eric Saloux}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {9}, PAGES = {1632 - 1646}, PUBLISHER = {Institute of Electrical and Electronics Engineers}, TITLE = {3D strain assessment in ultrasound (straus): A synthetic comparison of five tracking methodologies}, VOLUME = {32}, YEAR = {2013}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2013.2261823}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-00840039/file/TMI-2013-0246.pdf}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-00840039}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{geremia:hal-00931809, OPTADDRESS = {}, AUTHOR = {Ezequiel Geremia and Darko Zikic and Olivier Clatz and Bjoern H. 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Buchner and Murli Krishna and Nicholas Ayache and Michael B. Wallace}, JOURNAL = {World Journal of Gastroenterology}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, TITLE = {Software for Automated Classification of probe-based Confocal Laser Endomicroscopy Videos of Colorectal Polyps}, OPTVOLUME = {}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Barbara.Andre/ANDRE-WGJ-2012-Submitted.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00813813}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{andre:tmi:2012, AUTHOR = {Barbara André and Tom Vercauteren and Anna M. Buchner and Michael B. Wallace and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {June}, OPTNOTE = {}, NUMBER = {6}, PAGES = {1276-1288}, TITLE = {Learning Semantic and Visual Similarity for Endomicroscopy Video Retrieval}, VOLUME = {31}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Barbara.Andre/ANDRE-TMI12-Manuscript.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00618057}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{BlancSeiler:MEDIA:2012, AUTHOR = {R. Blanc and Christof Seiler and G. Székely and L. 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Aldo Rinaldi and Reza Razavi and Nicholas Ayache}, JOURNAL = {Biomedical Engineering, IEEE Transactions on}, MONTH = {jan.}, OPTNOTE = {}, NUMBER = {1}, PAGES = {20 -24}, TITLE = {Personalization of Cardiac Motion and Contractility From Images Using Variational Data Assimilation}, VOLUME = {59}, YEAR = {2012}, OPTABSTRACT = {}, DOI = {10.1109/TBME.2011.2160347}, OPTISBN = {}, ISSN = {0018-9294}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/Delingette-TBME-2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616183}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Durrleman:JHE:12, AUTHOR = {Stanley Durrleman and Xavier Pennec and Alain Trouvé and Nicholas Ayache and José Braga}, JOURNAL = {Journal of Human Evolution}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {74 - 88}, TITLE = {Comparison of the endocranial ontogenies between chimpanzees and bonobos via temporal regression and spatiotemporal registration}, VOLUME = {62}, YEAR = {2012}, OPTABSTRACT = {}, DOI = {10.1016/j.jhevol.2011.10.004}, OPTISBN = {}, ISSN = {0047-2484}, KEYWORDS = {Endocranium}, URL = {https://www-sop.inria.fr/asclepios/Publications/Stanley.Durrleman/Durrleman_JHE_2012.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00816048}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{kelm:inria-00616193, AUTHOR = {B. Michael Kelm and Frederik O. Kaster and A. Henning and Marc-André Weber and P. Bachert and P. Boesiger and Fred A. Hamprecht and Bjoern H. Menze}, JOURNAL = {NMR in Biomedicine}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {1-13}, PUBLISHER = {Wiley}, TITLE = {Using spatial prior knowledge in the spectral fitting of MRS images}, VOLUME = {25}, YEAR = {2012}, OPTABSTRACT = {}, DOI = {10.1002/nbm.1704}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00616193}, X-ID-HAL = {inria-00616193}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Lombaert:TMI:12, AUTHOR = {Hervé Lombaert and Jean-Marc Peyrat and Pierre Croisille and Stanislas Rapacchi and Laurent Fanton and Farida Cheriet and Patrick Clarysse and Isabelle Magnin and Hervé Delingette and Nicholas Ayache}, JOURNAL = {IEEE Trans. on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {7}, PAGES = {1436--1447}, TITLE = {Human Atlas of the Cardiac Fiber Architecture: Study on a Healthy Population}, VOLUME = {31}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/TMI-HumanAtlas-CardiacFibers.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.archives-ouvertes.fr/hal-00797755}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Marchesseau:BMMB:2012, AUTHOR = {Stéphanie Marchesseau and Hervé Delingette and Maxime Sermesant and Nicholas Ayache}, JOURNAL = {Biomechanics and Modeling in Mechanobiology}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, TITLE = {Fast Parameter Calibration of a Cardiac Electromechanical Model from Medical Images based on the Unscented Transform}, OPTVOLUME = {}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Stephanie.Marchesseau/BMMB-Marchesseau2012.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00813847}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{person:hal-00651731, AUTHOR = {Christophe Person and Valérie Louis-Dorr and Sylvain Poussier and Olivier Commowick and Grégoire Malandain and Louis Maillard and Didier Wolf and Nicolas Gilet and Véronique Roch and Gilles Karcher and Pierre-Yves Marie}, JOURNAL = {Clinical Nuclear Medicine}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {268-273}, TITLE = {Voxel-based quantitative analysis of brain images from F-18 Fluorodeoxyglucose Positron Emission Tomography with a Block-Matching algorithm for spatial normalization}, VOLUME = {37}, YEAR = {2012}, OPTABSTRACT = {}, DOI = {10.1097/RLU.0b013e3182443b2d}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/hal-00651731}, X-ID-HAL = {hal-00651731}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pop:2012:MedIA, AUTHOR = {M. Pop and Maxime Sermesant and G. Liu and Jatin Relan and Tommaso Mansi and A. Soong and Jean-Marc Peyrat and M.V. Truong and P. Fefer and Elliot R. McVeigh and Hervé Delingette and A.J. Dick and Nicholas Ayache and G.A Wright}, JOURNAL = {Medical Image Analysis}, MONTH = {February}, OPTNOTE = {}, NUMBER = {2}, PAGES = {505-523}, TITLE = {Construction of 3D MR image-based computer models of pathologic hearts, augmented with histology and optical fluorescence imaging to characterize action potential propagation}, VOLUME = {16}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/MedIA_Mihaela2012.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00813859}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{RitaccoSeiler:CTB:2012, AUTHOR = {L. Ritacco and Christof Seiler and G. Farfalli and L. Nolte and Mauricio Reyes and D. Muscolo and L. Tinao}, JOURNAL = {Cell and Tissue Banking}, OPTMONTH = {}, NOTE = {to appear}, OPTNUMBER = {}, OPTPAGES = {}, TITLE = {Validity of an Automatic Measure Protocol in Distal Femur for Allograft Selection from a Three-Dimensional Virtual Bone Bank System}, OPTVOLUME = {}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Christof.Seiler/RitaccoSeilerCTB2012.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Lorenzi:PSY:2012, AUTHOR = {Roberta Rossi and Michela Pievani and Marco Lorenzi and Marina Boccardi and Rossella Beneduce and Stefano Bignotti and Genoveffa Borsci and Maria Cotelli and Panteleimon Giannakopoulos and Laura R. Magni and Luciana Rillosi and Sandra Rosini and Giuseppe Rossi and Giovanni B. Frisoni}, JOURNAL = {Psychiatry Research: Neuroimaging}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {S0925-4927}, TITLE = {Structural brain features of borderline personality and bipolar disorders}, VOLUME = {12}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Marco.Lorenzi/Lorenzi-PSY-2012.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {IT}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00809081}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Seiler:TERM:2012, AUTHOR = {Christof Seiler and A. Gazdhar and Mauricio Reyes and L.M. Benneker and T. Geiser and K.A. Siebenrock and B. Gantenbein-Ritter}, JOURNAL = {Journal of Tissue Engineering and Regenerative Medicine}, OPTMONTH = {}, NOTE = {to appear}, OPTNUMBER = {}, OPTPAGES = {}, TITLE = {Time-Lapse Microscopy and Classification of 2D Human Mesenchymal Stem Cells Based on Cell Shape Picks Up Myogenic from Osteogenic and Adipogenic Differentiation}, OPTVOLUME = {}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Christof.Seiler/SeilerTERM2012.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Seiler:MEDIA:2012, AUTHOR = {Christof Seiler and Xavier Pennec and Mauricio Reyes}, JOURNAL = {Medical Image Analysis (MedIA)}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {7}, PAGES = {1371-1384}, TITLE = {Capturing the Multiscale Anatomical Shape Variability with Polyaffine Transformation Trees}, VOLUME = {16}, YEAR = {2012}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2012.05.011}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Christof.Seiler/SeilerPolyaffineTransformationTreesMedIA2012.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {CH}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00813866}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Sermesant:MEDIA:2012, AUTHOR = {Maxime Sermesant and R. Chabiniok and P. Chinchapatnam and Tommaso Mansi and F. Billet and P. Moireau and Jean-Marc Peyrat and Ken C. L. Wong and Jatin Relan and Kawal Rhode and M. Ginks and P. Lambiase and Hervé Delingette and M. Sorine and C. Aldo Rinaldi and D. Chapelle and Reza Razavi and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {201-215}, TITLE = {Patient-specific electromechanical models of the heart for the prediction of pacing acute effects in CRT: A preliminary clinical validation}, VOLUME = {16}, YEAR = {2012}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/MedIAsermesant2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00616191/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{thariat:DII:2012, AUTHOR = {Juliette Thariat and Pierre-Yves Marcy and A. Lacout and Liliane Ramus and T. Girinsky and Y. Pointreau and Grégoire Malandain}, JOURNAL = {Diagn Interv Imaging}, MONTH = {May}, OPTNOTE = {}, NUMBER = {5}, PAGES = {342-50}, TITLE = {Radiotherapy and radiology: joint efforts for modern radiation planning and practice}, VOLUME = {93}, YEAR = {2012}, ABSTRACT = {With new irradiation techniques, the dose can be better matched to the contours of the tumour. The corollary is that greater precision is required. Recent intercomparison studies of treatment plans have emphasized the need to harmonise contouring practices. More of a consensus approach is based on using adaptive imaging modalities, expert group recommendations and automatic segmentation atlases, on harmonisation of dosimetric decisions through employing exhaustive nomograms for organs at risk, and on indexes for choosing optimal treatment plans. On another level, quality assurance and data pooling programmes have been set up, making use of DICOM-RT data transfer (image networks). The combination of several irradiation techniques (for example, intensity-modulated conformal radiation therapy plus CyberKnife((R)) boost and re-irradiation), making it possible to irradiate tumours better, requires the cumulative doses to be recorded by dose summation software. Real awareness has been achieved in recent years as regards improving the quality of treatment, pooling data and harmonising practices.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00813871}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{thariat-ramus:ijrobp:2012, AUTHOR = {Juliette Thariat and Liliane Ramus and Philippe Maingon and Guillaume Odin and Vincent Gregoire and Vincent Darcourt and Nicolas Guevara and Marie-Helene Orlanducci and Serge Marcie and Gilles Poissonnet and Pierre-Yves Marcy and Alex Bozec and Olivier Dassonville and Laurent Castillo and Francois Demard and Jose Santini and Grégoire Malandain}, JOURNAL = {Int J Radiat Oncol Biol Phys}, MONTH = {April}, OPTNOTE = {}, NUMBER = {5}, PAGES = {1858-65}, TITLE = {DENTALMAPS: Automatic Dental Delineation for Radiotherapy Planning in Head-and-neck Cancer}, VOLUME = {82}, YEAR = {2012}, ABSTRACT = {PURPOSE: To propose an automatic atlas-based segmentation framework of the dental structures, called Dentalmaps, and to assess its accuracy and relevance to guide dental care in the context of intensity-modulated radiotherapy. METHODS AND MATERIALS: A multi-atlas-based segmentation, less sensitive to artifacts than previously published head-and-neck segmentation methods, was used. The manual segmentations of a 21-patient database were first deformed onto the query using nonlinear registrations with the training images and then fused to estimate the consensus segmentation of the query. RESULTS: The framework was evaluated with a leave-one-out protocol. The maximum doses estimated using manual contours were considered as ground truth and compared with the maximum doses estimated using automatic contours. The dose estimation error was within 2-Gy accuracy in 75\% of cases (with a median of 0.9 Gy), whereas it was within 2-Gy accuracy in 30\% of cases only with the visual estimation method without any contour, which is the routine practice procedure. CONCLUSIONS: Dose estimates using this framework were more accurate than visual estimates without dental contour. Dentalmaps represents a useful documentation and communication tool between radiation oncologists and dentists in routine practice. Prospective multicenter assessment is underway on patients extrinsic to the database.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Liliane.Ramus/thariat-ramus_IJROBP_2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00616186/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Vichot2012, AUTHOR = {Florian Vichot and H. Cochet and Benoit Bleuzé and Nicolas Toussaint and P. Jaïs and Maxime Sermesant}, HOWPUBLISHED = {rlhttp://hdl.handle.net/10380/3361}, INSTITUTION = {INRIA}, JOURNAL = {Midas Journal}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, TITLE = {Cardiac Interventional Guidance using Multimodal Data Processing and Visualisation: medInria as an Interoperability Platform}, OPTVOLUME = {}, YEAR = {2012}, ABSTRACT = {medInria is a free medical imaging software developed at Inria, which aims at providing clinicians with state-of-the-art algorithms dedicated to medical image processing and visualization. Efforts have been made to simplify the user interface, while keeping high-level algorithms. In this particular article, we will concentrate on its use in preoperative preparation for cardiac interventions, and how we handle the difficulties arising from the lack of standard format for data types such as meshes or fibers, the absence of a common programming interface for data processing algorithms, notably registration, and the issues of visualisation where display conventions would be beneficial.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Standards, Data Formats, Registration, Visualisation}, URL = {http://www.midasjournal.org/download/pdf/19873/IJ_863_2_medInriaInteroperabilityPlatform.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {yes}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00813873}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{faure2012sofa, OPTADDRESS = {}, AUTHOR = {François Faure and Christian Duriez and Hervé Delingette and Jérémie Allard and Benjamin Gilles and Stéphanie Marchesseau and Hugo Talbot and Hadrien Courtecuisse and Guillaume Bousquet and Igor Peterlik and Stéphane Cotin}, BOOKTITLE = {Soft Tissue Biomechanical Modeling for Computer Assisted Surgery}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Yohan Payan}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Springer}, OPTSERIES = {}, TITLE = {SOFA: A Multi-Model Framework for Interactive Physical Simulation}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2012}, OPTABSTRACT = {}, DOI = {10.1007/8415_2012_125}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/hal-00681539}, X-ID-HAL = {hal-00681539}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{pennec:MIG:2012, OPTADDRESS = {}, AUTHOR = {Xavier Pennec and Vincent Arsigny}, BOOKTITLE = {Matrix Information Geometry}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Frederic Barbaresco and Amit Mishra and Frank Nielsen}, MONTH = {May}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {123-166}, PUBLISHER = {Springer}, OPTSERIES = {}, TITLE = {Exponential Barycenters of the Canonical Cartan Connection and Invariant Means on Lie Groups}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2012}, ABSTRACT = {When performing statistics on elements of sets that possess a particular geometric structure, it is desirable to respect this structure. For instance in a Lie group, it would be judicious to have a notion of a mean which is stable by the group operations (composition and inversion). Such a property is ensured for Riemannian center of mass in Lie groups endowed with a bi-invariant Riemannian metric, like compact Lie groups (e.g. rotations). However, bi-invariant Riemannian metrics do not exist for most non compact and non-commutative Lie groups. This is the case in particular for rigid-body transformations in any dimension greater than one, which form the most simple Lie group involved in biomedical image registration. In this paper, we propose to replace the Riemannian metric by an affine connection structure on the group. We show that the canonical Cartan connections of a connected Lie group provides group geodesics which are completely consistent with the composition and inversion. With such a non-metric structure, the mean cannot be defined by minimizing the variance as in Riemannian Manifolds. However, the characterization of the mean as an exponential barycenter gives us an implicit definition of the mean using a general barycentric equation. Thanks to the properties of the canonical Cartan connection, this mean is naturally bi-invariant. We show the local existence and uniqueness of the invariant mean when the dispersion of the data is small enough. We also propose an iterative fixed point algorithm and demonstrate that the convergence to the invariant mean is at least linear. In the case of rigid-body transformations, we give a simple criterion for the global existence and uniqueness of the bi-invariant mean, which happens to be the same as for rotations. We also give closed forms for the bi-invariant mean in a number of simple but instructive cases, including 2D rigid transformations. For general linear transformations, we show that the bi-invariant mean is a generalization of the (scalar) geometric mean, since the determinant of the bi-invariant mean is the geometric mean of the determinants of the data. Finally, we extend the theory to higher order moments, in particular with the covariance which can be used to define a local bi-invariant Mahalanobis distance.}, DOI = {10.1007/978-3-642-30232-9_7}, ISBN = {978-3-642-30231-2}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://hal.inria.fr/hal-00699361/PDF/Bi-Invar-Means.pdf}, OPTURL-PUBLISHER = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {no}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00699361}, X-ID-HAL = {hal-00699361}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Andre:MEDIA:11, AUTHOR = {Barbara André and Tom Vercauteren and Anna M. Buchner and Michael B. Wallace and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {August}, OPTNOTE = {}, NUMBER = {4}, PAGES = {460--476}, TITLE = {A Smart Atlas for Endomicroscopy using Automated Video Retrieval}, VOLUME = {15}, YEAR = {2011}, ABSTRACT = {To support the challenging task of early epithelial cancer diagnosis from in vivo endomicroscopy, we propose a content-based video retrieval method that uses an expert-annotated database. Motivated by the recent successes of non-medical content-based image retrieval, we first adjust the standard Bag-of-Visual-Words method to handle single endomicroscopic images. A local dense multi-scale description is proposed to keep the proper level of invariance, in our case to translations, in-plane rotations and affine transformations of the intensities. Since single images may have an insufficient field-of-view to make a robust diagnosis, we introduce a video-mosaicing technique that provides large field-of-view mosaic images. To remove outliers, retrieval is followed by a geometrical approach that captures a statistical description of the spatial relationships between the local features. Building on image retrieval, we then focus on efficient video retrieval. Our approach avoids the time-consuming parts of the video-mosaicing by relying on coarse registration results only to account for spatial overlap between images taken at different times. To evaluate the retrieval, we perform a simple nearest neighbors classification with leave-one-patient-out cross-validation. From the results of binary and multi-class classification, we show that our approach outperforms, with statistical significance, several state-of-the art methods. We obtain a binary classification accuracy of 94.2%, which is quite close to clinical expectations.}, DOI = {10.1016/j.media.2011.02.003}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Content-Based Video Retrieval (CBVR), Endomicroscopy, Bag-of-Visual-Words (BoW), Video-mosaicing}, URL = {https://www-sop.inria.fr/asclepios/Publications/Barbara.Andre/ANDRE-MedIA2011-published.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616190}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Ayache:MedScience:11, AUTHOR = {Nicholas Ayache and Olivier Clatz and Hervé Delingette and Grégoire Malandain and Xavier Pennec and Maxime Sermesant}, JOURNAL = {Médecine / Sciences}, MONTH = {March}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {208--213}, PUBLISHER = {EDK France}, TITLE = {Vers un patient numérique personnalisé pour le diagnostic et la thérapie guidés par l'image}, VOLUME = {27}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/Asclepios-Medecine-sciences2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {no}, X-INTERNATIONAL-AUDIENCE = {no}, X-INVITED-CONFERENCE = {yes}, X-PAYS = {}, X-SCIENTIFIC-POPULARIZATION = {yes}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00616192/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{BANMayache2011, AUTHOR = {N. Ayache and H. Delingette and M. Sermesant}, JOURNAL = {Bulletin de l'Académie Nationale de Médecine}, MONTH = {November}, OPTNOTE = {}, NUMBER = {8}, OPTPAGES = {}, TITLE = {Le coeur numérique personnalisé}, VOLUME = {195}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/Ayache-et-al-Academie-Medecine-24Oct2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Brun:TMI:2011, AUTHOR = {Caroline Brun and Natasha Leporé and Xavier Pennec and Yi-Yu Chou and Agatha Lee and De Zubicaray, Greig and Katie Mcmahon and Margaret Wright and James C. Gee and Paul Thompson}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {February}, NOTE = {PMID: 20813636}, NUMBER = {2}, PAGES = {184-202}, PUBLISHER = {IEEE}, TITLE = {A nonconservative Lagrangian framework for statistical fluid registration-SAFIRA.}, VOLUME = {30}, YEAR = {2011}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2010.2067451}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Brun_TMI09.pdf}, OPTURL-PUBLISHER = {}, PMID = {20813636}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616099}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Camara:PBMB:2011, AUTHOR = {O. Camara and M. Sermesant and P. Lamata and L. Wang and M. Pop and J. Relan and M. De Craene and H. Delingette and H. Liu and S. Niederer and A. Pashaei and G. Plank and D. Romero and R. Sebastian and K.C.L. Wong and H. Zhang and N. Ayache and A.F. Frangi and P. Shi and N.P. Smith and G.A. Wright}, JOURNAL = {Progress in Biophysics and Molecular Biology}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {122-133}, TITLE = {Inter-Model Consistency and Complementarity: Learning from ex-vivo Imaging and Electrophysiological Data towards an Integrated Understanding of Cardiac Physiology}, VOLUME = {107}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/PBMBcamara2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616197}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Chung:TVCJ:2011, AUTHOR = {François Chung and Jérôme Schmid and Nadia Magnenat-Thalmann and Hervé Delingette}, JOURNAL = {The Visual Computer}, MONTH = {February}, NOTE = {10.1007/s00371-010-0536-9}, NUMBER = {2}, PAGES = {141-151}, TITLE = {Comparison of statistical models performance in case of segmentation using a small amount of training datasets}, VOLUME = {27}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Francois.Chung/comparison_of_statistical_models_performance_in_case_of_segmentation_using_a_small_amount_of_training_datasets.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {CH}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616199}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{delingette:inria-00616183, AUTHOR = {Hervé Delingette and Florence Billet and Ken C.L. Wong and Maxime Sermesant and Rhode, Kawal, S. and Matt Ginks and C.A. Rinaldi and Reza Razavi and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Biomedical Engineering}, OPTMONTH = {}, NOTE = {In Press}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {undefined or unknown publisher}, TITLE = {Personalization of Cardiac Motion and Contractility from Images using Variational Data Assimilation}, OPTVOLUME = {}, YEAR = {2011}, ABSTRACT = {Personalization is a key aspect of biophysical models in order to impact clinical practice. In this paper, we propose a personalization method of electromechanical models of the heart from cine-MR images based on the adjoint method. After estimation of electrophysiological parameters, the cardiac motion is estimated based on a proactive electromechanical model. Then cardiac contractilities on two or three regions are estimated by minimizing the discrepancy between measured and simulation motion. Evaluation of the method on three patients with infarcted or dilated myocardium is provided.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00616183}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Durrleman:NImg:11, AUTHOR = {Stanley Durrleman and Pierre Fillard and Xavier Pennec and Alain Trouvé and Nicholas Ayache}, JOURNAL = {NeuroImage}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {1073-1090}, TITLE = {Registration, Atlas Estimation and Variability Analysis of White Matter Fiber Bundles Modeled as Currents}, VOLUME = {55}, YEAR = {2011}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2010.11.056}, OPTISBN = {}, ISSN = {1053-8119}, KEYWORDS = {Computational Anatomy}, URL = {https://www-sop.inria.fr/asclepios/Publications/Stanley.Durrleman/Durrleman_NImg10.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00541930/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Geremia:NeuroImage:11, AUTHOR = {Ezequiel Geremia and Olivier Clatz and Bjoern H. Menze and Ender Konukoglu and Antonio Criminisi and Nicholas Ayache}, JOURNAL = {NeuroImage}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {378-90}, TITLE = {Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel Magnetic Resonance Images}, VOLUME = {57(2)}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Ezequiel.Geremia/Geremia-MS-NeuroImage-2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616194}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{kelm:NBM:11, AUTHOR = {BM Kelm and FO Kaster and A Henning and MA Weber and P Bachert and P Boesiger and FA Hamprecht and BH Menze}, JOURNAL = {NMR in Biomedicine}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, TITLE = {Using spatial prior knowledge in the spectral fitting of MRS images}, VOLUME = {[Epub ahead of print]}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://people.csail.mit.edu/menze/papers/kelm_10_using.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616193}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Konukoglu:PBMB:2011, AUTHOR = {E. Konukoglu and J. Relan and U. Cilingir and B. Menze and P. Chinchapatnam and A. Jadidi and H. Cochet and M. Hocini and H. Delingette and P. Jaïs and M. Haïssaguerre and N. Ayache and M. Sermesant}, JOURNAL = {Progress in Biophysics and Molecular Biology}, MONTH = {October}, OPTNOTE = {}, NUMBER = {1}, PAGES = {134-146}, TITLE = {Efficient Probabilistic Model Personalization Integrating Uncertainty on Data and Parameters: Application to Eikonal-Diffusion Models in Cardiac Electrophysiology}, VOLUME = {107}, YEAR = {2011}, OPTABSTRACT = {}, DOI = {10.1016/j.pbiomolbio.2011.07.002}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/KonukogluPBMB2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616198}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Langs:Neuroimage:2011, AUTHOR = {Georg Langs and Bjoern H. Menze and Danial Lashkari and Polina Golland}, JOURNAL = {NeuroImage}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {497-507}, TITLE = {Detecting stable distributed patterns of brain activation using Gini contrast}, VOLUME = {56}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://people.csail.mit.edu/langs/Georg_Langs/index_files/rf_rev.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {US}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616195}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Lorenzi:DaA10:11, AUTHOR = {Marco Lorenzi and Alberto Beltramello and Nicola Mercuri and Elisa Canu and Giada Zoccatelli and Francesca Pizzini and Franco Alessandrini and Maria Cotelli and Sandra Rosini and Daniela Costardi and Carlo Caltagirone and Giovanni Frisoni}, JOURNAL = {Drugs and Aging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {205--217}, TITLE = {Effect of memantine on resting state default mode network activity in Alzheimer's disease}, VOLUME = {28}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {IT}, X-PROCEEDINGS = {yes}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616182}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Mansi:IJCV:11, AUTHOR = {Tommaso Mansi and Xavier Pennec and Maxime Sermesant and Hervé Delingette and Nicholas Ayache}, JOURNAL = {International Journal of Computer Vision}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {92--111}, TITLE = {iLogDemons: A Demons-Based Registration Algorithm for Tracking Incompressible Elastic Biological Tissues}, VOLUME = {92}, YEAR = {2011}, OPTABSTRACT = {}, DOI = {10.1007/s11263-010-0405-z}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Tommaso.Mansi/mansi10IJCV.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616187}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Mansi:TMI:11, AUTHOR = {Tommaso Mansi and Ingmar Voigt and Benedetta Leonardi and Xavier Pennec and Stanley Durrleman and Maxime Sermesant and Hervé Delingette and Andrew M. Taylor and Younes Boudjemline and Giacomo Pongiglione and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {September}, OPTNOTE = {}, NUMBER = {30}, PAGES = {1605--1616}, TITLE = {A Statistical Model for Quantification and Prediction of Cardiac Remodelling: Application to Tetralogy of Fallot}, VOLUME = {9}, YEAR = {2011}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2011.2135375}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Tommaso.Mansi/MansiTMI2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616185}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{murphy:itmi:2011, AUTHOR = {Keelin Murphy and van Ginneken, Bram and Joseph M. Reinhardt and Sven Kabus and Kai Ding and Xiang Deng and Kunlin Cao and Kaifang Du and Gary E. Christensen and Vincent Garcia and Tom Vercauteren and Nicholas Ayache and Olivier Commowick and Gregoire Malandain and Ben Glocker and Nikos Paragios and Nassir Navab and Vladlena Gorbunova and Jon Sporring and de Bruijne, Marleen and Xiao Han and Mattias P. Heinrich and Julia A. Schnabel and Mark Jenkinson and Cristian Lorenz and Marc Modat and Jamie R. McClelland and Sebastien Ourselin and Sascha E.A. Muenzing and Max A. Viergever and Dante De Nigris and D. Louis Collins and Tal Arbel and Marta Peroni and Rui Li and Gregory C. Sharp and Alexander Schmidt-Richberg and Jan Ehrhardt and Rene Werner and Dirk Smeets and Dirk Loeckx and Gang Song and Nicholas Tustison and Brian Avants and James C. Gee and Marius Staring and Stefan Klein and Berend C. Stoel and Martin Urschler and Manuel Werlberger and Jef Vandemeulebroucke and Simon Rit and David Sarrut and Josien P.W. Pluim}, JOURNAL = {IEEE Trans Med Imaging}, MONTH = {November}, OPTNOTE = {}, NUMBER = {11}, PAGES = {1901-20}, TITLE = {Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge}, VOLUME = {30}, YEAR = {2011}, ABSTRACT = {EMPIRE10 (Evaluation of Methods for Pulmonary Image REgistration 2010) is a public platform for fair and meaningful comparison of registration algorithms which are applied to a database of intrapatient thoracic CT image pairs. Evaluation of nonrigid registration techniques is a nontrivial task. This is compounded by the fact that researchers typically test only on their own data, which varies widely. For this reason, reliable assessment and comparison of different registration algorithms has been virtually impossible in the past. In this work we present the results of the launch phase of EMPIRE10, which comprised the comprehensive evaluation and comparison of 20 individual algorithms from leading academic and industrial research groups. All algorithms are applied to the same set of 30 thoracic CT pairs. Algorithm settings and parameters are chosen by researchers expert in the configuration of their own method and the evaluation is independent, using the same criteria for all participants. All results are published on the EMPIRE10 website (http://empire10.isi.uu.nl). The challenge remains ongoing and open to new participants. Full results from 24 algorithms have been published at the time of writing. This paper details the organization of the challenge, the data and evaluation methods and the outcome of the initial launch with 20 algorithms. The gain in knowledge and future work are discussed.}, DOI = {10.1109/TMI.2011.2158349}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PMID = {21632295}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://www.hal.inserm.fr/inserm-00607794}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pernod:CG:2011, AUTHOR = {E. Pernod and M. Sermesant and E. Konukoglu and J. Relan and H. Delingette and N. Ayache}, JOURNAL = {Computers and Graphics}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {431--440}, TITLE = {A Multi-Front Eikonal Model of Cardiac Electrophysiology for Interactive Simulation of Radio-Frequency Ablation}, VOLUME = {35}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/CG-VCBM-2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616180}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pohl:Neurosurgery:11, AUTHOR = {K.M Pohl and E. Konukoglu and S. Novellas and N. Ayache and A. Fedorov and I.-F. Talos and A. Golby and W.M. Wells and R. Kikinis and P.M. Black}, JOURNAL = {Neurosurgery}, MONTH = {March}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {225-33}, PUBLISHER = {EDK France}, TITLE = {A New Metric for Detecting Change in Slowly Evolving Brain Tumors: Validation in Meningioma Patients}, VOLUME = {68(1 Suppl Operative)}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Kilian.Pohl/pohl-Neurosurgery-2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616196}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pop:TBME:2011, AUTHOR = {M. Pop and M. Sermesant and T. Mansi and E. Crystal and S. Ghate and J. Peyrat and I. Lashevsky and Beiping Qiang and E. McVeigh and N. Ayache and G.A. Wright}, JOURNAL = {Biomedical Engineering, IEEE Transactions on}, MONTH = {dec.}, OPTNOTE = {}, NUMBER = {12}, PAGES = {3483-3486}, TITLE = {Correspondence Between Simple 3-D MRI-Based Computer Models and In-Vivo EP Measurements in Swine With Chronic Infarctions}, VOLUME = {58}, YEAR = {2011}, OPTABSTRACT = {}, DOI = {10.1109/TBME.2011.2168395}, OPTISBN = {}, ISSN = {0018-9294}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/IEEE_TBME_Mihaela2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00813802}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Relan:IF:2011, AUTHOR = {Jatin Relan and Phani Chinchapatnam and Maxime Sermesant and Kawal Rhode and Matt Ginks and Hervé Delingette and C. Aldo Rinaldi and Reza Razavi and Nicholas Ayache}, JOURNAL = {Journal of the Royal Society Interface Focus}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {396--407}, TITLE = {Coupled Personalization of Cardiac Electrophysiology Models for Prediction of Ischaemic Ventricular Tachycardia}, VOLUME = {1}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Jatin.Relan/RSFS-2010-0041_Manuscript.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616188}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Relan:TBME:11, AUTHOR = {Jatin Relan and Mihaela Pop and Hervé Delingette and Graham Wright and Nicholas Ayache and Maxime Sermesant}, JOURNAL = {IEEE Transactions on Bio-Medical Engineering}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {12}, PAGES = {3339--3349}, TITLE = {Personalisation of a Cardiac Electrophysiology Model using Optical Mapping and MRI for Prediction of Changes with Pacing}, VOLUME = {58}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Jatin.Relan/TBME-00761-2010-R2-preprint.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {yes}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616184}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {English} } @ARTICLE{Sermesant:CCIR:11, AUTHOR = {Kawal Rhode and Maxime Sermesant}, JOURNAL = {Current Cardiovascular Imaging Reports}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {116-126}, TITLE = {Modeling and Registration for Electrophysiology Procedures Based on Three-Dimensional Imaging}, VOLUME = {4}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/ModelRegistrationEP.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616181}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Smith:IF:2011, AUTHOR = {N. Smith and de Vecchi, A. and M. McCormick and D. Nordsletten and O. Camara and A.F. Frangi and H. Delingette and M. Sermesant and J. Relan and N. Ayache and M. W. Krueger and W. Schulze and R. Hose and I. Valverde and P. Beerbaum and C. Staicu and M. Siebes and J. Spaan and P. Hunter and J. Weese and H. Lehmann and D. Chapelle and R. Razavi}, JOURNAL = {Journal of the Royal Society Interface Focus}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {349--364}, PUBLISHER = {The Royal Society}, TITLE = {euHeart: Personalized and integrated cardiac care using patient-specific cardiovascular modelling}, VOLUME = {1}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, ISSN = {2042-8898}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/FOCUSsmith2011.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616189}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Ohman:VisualComputer:11, AUTHOR = {C. Öhman and D. M. Espino and T. Heimann and M. Baleani and H. Delingette and M. Viceconti}, JOURNAL = {The Visual Computer}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {153--159}, TITLE = {Subject-specific knee joint model: Design of an experiment to validate a multi-body finite element model}, VOLUME = {27}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/Ohman_et_al_Vis_comput_11.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {IT}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616200}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Delingette:RABIPA:10, OPTADDRESS = {}, AUTHOR = {T. Heimann and Hervé Delingette}, BOOKTITLE = {Biomedical Image Processing}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Thomas Martin Deserno}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Springer}, OPTSERIES = {}, TITLE = {Model-based segmentation}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, ISBN = {978-3-642-15815-5}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/members/Herve.Delingette/Publications/Delingette-RABIPA-2010.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {DE}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616063}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{menze_11_image-based, OPTADDRESS = {}, AUTHOR = {B H Menze and E Stretton and E Konukoglu and N. Ayache}, BOOKTITLE = {Optimal control in image processing}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {C S Garbe and R Rannacher and U Platt and T Wagner}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Springer, Heidelberg/Germany}, OPTSERIES = {}, TITLE = {Image-based modeling of tumor growth in patients with glioma.}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2011}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://people.csail.mit.edu/menze/papers/menze_11_image-based.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00825866}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cohen:rn:2010, AUTHOR = {M Cohen and C Lebrun and D Aufauvre and S Chanalet and C Filleau-Bertogliatti and W Camu and P Thomas and G Malandain and P Clavelou}, JOURNAL = {Rev Neurol (Paris)}, MONTH = {November}, NOTE = {[In French]}, NUMBER = {11}, PAGES = {894-900}, TITLE = {[Longitudinal study of health related quality of life in multiple sclerosis: correlation with MRI parameters]}, VOLUME = {166}, YEAR = {2010}, ABSTRACT = {INTRODUCTION: Health related quality of life (HRQOL) is often affected in multiple sclerosis (MS). Nevertheless, to our knowledge, there is no longitudinal study in the literature about the correlation between MRI parameters and HRQOL in MS patients. METHODS: We included 28 patients with clinically definite relapsing remitting MS. All patients initiated subcutaneous interferon beta-1a therapy. To assess HRQOL, we used the SEP-59 scale, the French validated translation of MSQOL-54, and the MusiQoL scale. Conventional MRI was performed every year. Lesion load (LL) and brain atrophy were automatically measured using SepINRIA, a free software developed by INRIA in Sophia Antipolis. RESULTS: The mean EDSS score was 1.7 and disease duration was 2.5 years. Our results revealed that HRQOL was significantly correlated to T1 and T2-LL with both SEP-59 and MusiQoL scales. T1-LL was better correlated with physical dimensions and T2-LL was better correlated with mental components. At 1-year follow-up, patients whose MRI showed either an increase of T1 LL or at least one gadolinium enhancing lesion had a worse HRQOL at the end of the study. Initial brain parenchymal fraction (BPF) measure was also correlated with the long-term follow-up HRQOL. EDSS scored at the end of the study had not significantly changed (1.3; P>0.05). CONCLUSION: Our study revealed pertinent clinicoradiological correlations between HRQOL and MRI parameters in our cohort.}, DOI = {10.1016/j.neurol.2010.06.002}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Adolescent, Adult, Atrophy, Brain, pathology, Cognition, physiology, Contrast Media, Disease Progression, Female, Gadolinium, Humans, Image Processing Computer-Assisted, Interferon Type I, therapeutic use, Longitudinal Studies, Magnetic Resonance Imaging, Male, Middle Aged, Multiple Sclerosis Chronic Progressive, pathology, Neuropsychological Tests, Quality of Life, Recombinant Proteins, Young Adult}, OPTURL = {}, OPTURL-PUBLISHER = {}, PMID = {20728910}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00813767}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Delingette:DocSciences:2010, AUTHOR = {Hervé Delingette and Maxime Sermesant}, JOURNAL = {Doc Sciences}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {26-33}, TITLE = {Le coeur numérique}, VOLUME = {13}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {no}, X-INTERNATIONAL-AUDIENCE = {no}, X-PAYS = {}, X-SCIENTIFIC-POPULARIZATION = {yes}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{fernandez:nm:2010, AUTHOR = {Romain Fernandez and Pradeep Das and Vincent Mirabet and Eric Moscardi and Jan Traas and Jean-Luc Verdeil and Grégoire Malandain and Christophe Godin}, JOURNAL = {Nature Methods}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {7}, PAGES = {547-553}, TITLE = {Imaging plant growth in 4-D: robust tissue reconstruction and lineaging at cell resolution}, VOLUME = {7}, YEAR = {2010}, ABSTRACT = {Acquiring quantitative information on growing organs is an absolute requirement for a better understanding of morphogenesis in both plants and animals. However, detailed analyses of growth patterns at cellular resolution have remained elusive. To address this, we have designed a novel protocol where we image whole organs from multiple angles, and then computationally merge and segment these images to provide accurate cell identification within high-resolution 3-D reconstructions. We then extend this protocol to study growing organs in 4-D by using a temporal series of such reconstructions to automatically track cell lineages through multiple rounds of cell division during organ development. Using these methods, we carry out quantitative analyses of Arabidopsis flower development at cell resolution, and reveal differential growth patterns of key regions during the early stages of floral morphogenesis that were previously inaccessible. Lastly, using rice roots, we demonstrate that our approach is both generic and scalable.}, DOI = {10.1038/nmeth.1472}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/fernandez-nm-2010.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.archives-ouvertes.fr/hal-00521491}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{galanaud:ajnr:2010, AUTHOR = {Damien Galanaud and Stéphane Haik and Marius George Linguraru and Jean-Philippe Ranjeva and Baptiste Faucheux and Elsa Kaphan and Nicholas Ayache and Jacques Chiras and Patrick Cozzone and Didier Dormont and Jean-Philippe Brandel}, JOURNAL = {AJNR. American journal of neuroradiology}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {7}, PAGES = {1311-8}, TITLE = {Combined diffusion imaging and MR Spectroscopy in Human Prion Diseases}, VOLUME = {31}, YEAR = {2010}, ABSTRACT = {BACKGROUND AND PURPOSE: The physiopathologic bases underlying the signal intensity changes and reduced diffusibility observed in prion diseases (TSEs) are still poorly understood. We evaluated the interest of MRS combined with DWI both as a diagnostic tool and a way to understand the mechanism underlying signal intensity and ADC changes in this setting. MATERIALS AND METHODS: We designed a prospective study of multimodal MR imaging in patients with suspected TSEs. Forty-five patients with a suspicion of TSE and 11 age-matched healthy volunteers were included. The MR imaging protocol included T1, FLAIR, and DWI sequences. MRS was performed on the cerebellum, pulvinar, right lenticular nucleus, and frontal cortex. MR images were assessed visually, and ADC values were calculated. RESULTS: Among the 45 suspected cases, 31 fulfilled the criteria for probable or definite TSEs (19 sCJDs, 3 iCJDs, 2 vCJDs, and 7 genetic TSEs); and 14 were classified as AltDs. High signals in the cortex and/or basal ganglia were observed in 26/31 patients with TSEs on FLAIR and 29/31 patients on DWI. In the basal ganglia, high DWI signals corresponded to a decreased ADC. Metabolic alterations, increased mIns, and decreased NAA were observed in all patients with TSEs. ADC values and metabolic changes were not correlated; this finding suggests that neuronal stress (vacuolization), neuronal loss, and astrogliosis do not alone explain the decrease of ADC. CONCLUSIONS: MRS combined with other MR imaging is of interest in the diagnosis of TSE and provides useful information for understanding physiopathologic processes underlying prion diseases.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Linguraru/Galanaud-et-al-AJNR2010.pdf}, URL-PUBLISHER = {http://www.ajnr.org/content/31/7/1311.abstract}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Gianni:PTAMPES:10, AUTHOR = {D. Gianni and S. McKeever and T. Yu and R. Britten and Hervé Delingette and A. Frangi and P. Hunter and Nic Smith}, JOURNAL = {Philos Transact of the Royal Society A Mathematical Physical Engineering Sciences}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {3039--3056}, TITLE = {Sharing and reusing cardiovascular anatomical models over the Web: a step towards the implementation of the virtual physiological human project}, VOLUME = {368}, YEAR = {2010}, OPTABSTRACT = {}, DOI = {10.1098/rsta.2010.0025}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/members/Herve.Delingette/Publications/CardiacModelsDatabase.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {GB,ES}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616110}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Konukoglu:MEDIA:09, AUTHOR = {Ender Konukoglu and Olivier Clatz and Pierre-Yves Bondiau and Hervé Delingette and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {111-125}, TITLE = {Extrapolating Glioma Invasion Margin in Brain Magnetic Resonance Images: Suggesting New Irradiation Margins}, VOLUME = {14}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Ender.Konukoglu/MEDIA2009_konukoglu_extrapolation.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616107}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Konukoglu:TMI:09, AUTHOR = {Ender Konukoglu and Olivier Clatz and Bjoern H. Menze and Marc-André Weber and Bram Stieltjes and Emmanuel Mandonnet and Hervé Delingette and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {77-95}, TITLE = {Image Guided Personalization of Reaction-Diffusion Type Tumor Growth Models Using Modified Anisotropic Eikonal Equations}, VOLUME = {29}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Ender.Konukoglu/TMI2009_konukoglu_InverseProblem.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {DE,US}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616100}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Lorenzi:NBoA:10, AUTHOR = {Marco Lorenzi and Michael Donohue and Donata Paternico and Cristina Scarpazza and Susanne Ostrowitzki and Olivier Blin and Elaine Irving and G. Frisoni}, JOURNAL = {Neurobiology of Aging}, MONTH = {August}, NOTE = {Special Issue on ADNI}, OPTNUMBER = {}, PAGES = {1443-51}, TITLE = {Enrichment through biomarkers in clinical trials of Alzheimer's drugs in patients with mild cognitive impairment}, OPTVOLUME = {}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Marco.Lorenzi/Lorenzi_NBoA_2010.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {IT}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00813773}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Marchesseau:PBMB:10, AUTHOR = {Stéphanie Marchesseau and T. Heimann and Simon Chatelin and Rémy Willinger and Hervé Delingette}, JOURNAL = {Progress in Biophysics and Molecular Biology}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2-3}, PAGES = {185-196}, TITLE = {Fast porous visco-hyperelastic soft tissue model for surgery simulation: application to liver surgery}, VOLUME = {103}, YEAR = {2010}, OPTABSTRACT = {}, DOI = {10.1016/j.pbiomolbio.2010.09.005}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Stephanie.Marchesseau/PBMB-Marchesseau-2010.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.archives-ouvertes.fr/hal-00593223}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Toussaint:MAGMA:10, AUTHOR = {Markand D. Patel and Nicolas Toussaint and Geoffrey D. Charles-Edwards and Jean-Pierre Lin and Philip G. Batchelor}, JOURNAL = {Magnetic Resonance Materials in Physics, Biology and Medicine}, MONTH = {February}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, TITLE = {Distribution and Fibre Field Similarity Mapping of the Human Anterior Commissure Fibres by Diffusion Tensor Imaging}, OPTVOLUME = {}, YEAR = {2010}, OPTABSTRACT = {}, DOI = {10.1007/s10334-010-0201-3}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicolas.Toussaint/Toussaint.MAGMA.10.pdf}, OPTURL-PUBLISHER = {}, PMID = {20229087}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {GB}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Peyrat:TMI:2010, AUTHOR = {Jean-Marc Peyrat and Hervé Delingette and Maxime Sermesant and Chenyang Xu and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {July}, OPTNOTE = {}, NUMBER = {7}, PAGES = {1351-1368}, TITLE = {Registration of 4D Cardiac CT Sequences Under Trajectory Constraints With Multichannel Diffeomorphic Demons}, VOLUME = {29}, YEAR = {2010}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2009.2038908}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Jean-Marc.Peyrat/Peyrat_2010_TMI.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {US}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616101}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Ramus:CancerRadiother:2010, AUTHOR = {Liliane Ramus and Juliette Thariat and Pierre-Yves Marcy and Yoann Pointreau and Guillaume Bera and Olivier Commowick and Grégoire Malandain}, JOURNAL = {Cancer radiothérapie}, OPTMONTH = {}, NOTE = {In French}, NUMBER = {3}, PAGES = {206-12}, TITLE = {Outils de contourage, utilisation et construction d'atlas anatomiques : exemples des cancers de la tete et du cou}, VOLUME = {14}, YEAR = {2010}, ABSTRACT = {Highly conformal irradiation techniques are associated with steep gradient doses. Accuracy and reproducibility of delineation are required to avoid geometric misses and to properly report dose-volume effects on organs at risk. Guidelines of the International Commission on Radiation Units have largely contributed to high quality treatments. The ICRU endeavors to collect and evaluate the latest data and information pertinent to the problems of radiation measurement and dosimetry. There remains a need for delineation guidelines and automatic segmentation tools in routine practice. Among these tools, atlas-based segmentation has been shown to provide promising results. The methodology used for head and neck cancer patients is illustrated.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Liliane.Ramus/cancerRadiotherapie10_lramus.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {no}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616098}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Riklin-Raviv:MedIA:2010, AUTHOR = {Tammy Riklin-Raviv and Van Leemput, Koen and Bjoern H. Menze and William M. Wells and Polina Golland}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {5}, PAGES = {654-65}, TITLE = {Segmentation of image ensembles via latent atlases}, VOLUME = {14}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://people.csail.mit.edu/polina/papers/RiklinRaviv-MedIA-2010.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {US}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Yeo:TMI:10, AUTHOR = {Boon Thye Thomas Yeo and Mert Sabuncu and Tom Vercauteren and Nicholas Ayache and Bruce Fischl and Polina Golland}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {March}, NOTE = {PMID:19709963}, NUMBER = {3}, PAGES = {650--668}, TITLE = {Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration}, VOLUME = {29}, YEAR = {2010}, ABSTRACT = {We present the Spherical Demons algorithm for registering two spherical images. By exploiting spherical vector spline interpolation theory, we show that a large class of regularizors for the modified Demons objective function can be efficiently approximated on the sphere using iterative smoothing. Based on one parameter subgroups of diffeomorphisms, the resulting registration is diffeomorphic and fast. The Spherical Demons algorithm can also be modified to register a given spherical image to a probabilistic atlas. We demonstrate two variants of the algorithm corresponding to warping the atlas or warping the subject. Registration of a cortical surface mesh to an atlas mesh, both with more than 160k nodes requires less than 5 minutes when warping the atlas and less than 3 minutes when warping the subject on a Xeon 3.2GHz single processor machine. This is comparable to the fastest non-diffeomorphic landmarkfree surface registration algorithms. Furthermore, the accuracy of our method compares favorably to the popular FreeSurfer registration algorithm. We validate the technique in two different applications that use registration to transfer segmentation labels onto a new image: (1) parcellation of in-vivo cortical surfaces and (2) Brodmann area localization in ex-vivo cortical surfaces.}, DOI = {10.1109/TMI.2009.2030797}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://people.csail.mit.edu/ythomas/publications/2010SphericalDemons-TMI.pdf}, URL-PUBLISHER = {http://sites.google.com/site/yeoyeo02/software/sphericaldemonsrelease}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {US}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616102}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Konukoglu:MCM:2010, OPTADDRESS = {}, AUTHOR = {Ender Konukoglu and Olivier Clatz and Hervé Delingette and Nicholas Ayache}, BOOKTITLE = {Multiscale Cancer Modeling}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Thomas S. Deisboeck and Georgios Stamatakos}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {CRC Press}, SERIES = {Chapman & Hall/CRC Mathematical & Computational Biology}, TITLE = {Personalization of Reaction-Diffusion Tumor Growth Models in MR Images: Application to Brain Gliomas Characterization and Radiotherapy Planning}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2010}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Ender.Konukoglu/nih-cvit-chapter.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616111}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Sermesant:CRTbook:2010, OPTADDRESS = {}, AUTHOR = {Maxime Sermesant and Reza Razavi}, BOOKTITLE = {Patient-Specific Modeling of the Cardiovascular System}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Roy C.P. Kerckhoffs}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {167-182}, PUBLISHER = {Springer New York}, OPTSERIES = {}, TITLE = {Personalized Computational Models of the Heart for Cardiac Resynchronization Therapy}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2010}, OPTABSTRACT = {}, DOI = {10.1007/978-1-4419-6691-9_10}, ISBN = {978-1-4419-6691-9}, OPTISSN = {}, KEYWORDS = {Life Sciences}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {GB}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616112}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Arsigny:JMIV:09, AUTHOR = {Vincent Arsigny and Olivier Commowick and Nicholas Ayache and Xavier Pennec}, JOURNAL = {Journal of Mathematical Imaging and Vision}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {222-238}, TITLE = {A Fast and Log-Euclidean Polyaffine Framework for Locally Linear Registration}, VOLUME = {33}, YEAR = {2009}, OPTABSTRACT = {}, DOI = {10.1007/s10851-008-0135-9}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Arsigny_JMIV_polyaffine.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616084}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bardinet:jn:2009, AUTHOR = {Éric Bardinet and Manik Bhattacharjee and Didier Dormont and Bernard Pidoux and Grégoire Malandain and Michael Schupbach and Nicholas Ayache and Philippe Cornu and Yves Agid and Jerome Yelnik}, JOURNAL = {Journal of Neurosurgery}, MONTH = {February}, OPTNOTE = {}, NUMBER = {2}, PAGES = {208-19}, TITLE = {A three-dimensional histological atlas of the human basal ganglia. II. Atlas deformation strategy and evaluation in deep brain stimulation for Parkinson disease.}, VOLUME = {110}, YEAR = {2009}, ABSTRACT = {OBJECT: The localization of any given target in the brain has become a challenging issue because of the increased use of deep brain stimulation to treat Parkinson disease, dystonia, and nonmotor diseases (for example, Tourette syndrome, obsessive compulsive disorders, and depression). The aim of this study was to develop an automated method of adapting an atlas of the human basal ganglia to the brains of individual patients. METHODS: Magnetic resonance images of the brain specimen were obtained before extraction from the skull and histological processing. Adaptation of the atlas to individual patient anatomy was performed by reshaping the atlas MR images to the images obtained in the individual patient using a hierarchical registration applied to a region of interest centered on the basal ganglia, and then applying the reshaping matrix to the atlas surfaces. RESULTS: Results were evaluated by direct visual inspection of the structures visible on MR images and atlas anatomy, by comparison with electrophysiological intraoperative data, and with previous atlas studies in patients with Parkinson disease. The method was both robust and accurate, never failing to provide an anatomically reliable atlas to patient registration. The registration obtained did not exceed a 1-mm mismatch with the electrophysiological signatures in the region of the subthalamic nucleus. CONCLUSIONS: This registration method applied to the basal ganglia atlas forms a powerful and reliable method for determining deep brain stimulation targets within the basal ganglia of individual patients. }, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Basal Ganglia, pathology, Brain Mapping, methods, Deep Brain Stimulation, methods, Humans, Image Interpretation Computer-Assisted, methods, Imaging Three-Dimensional, methods, Magnetic Resonance Imaging, methods, Medical Illustration, Microelectrodes, Microscopy, Parkinson Disease, pathology, Red Nucleus, pathology, Sensitivity and Specificity, Substantia Nigra, pathology, Subthalamic Nucleus, pathology}, URL = {https://www-sop.inria.fr/asclepios/Publications/Bardinet/bardinet-jn-2008.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616085}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Brun:NeuroImage:09, AUTHOR = {Caroline Brun and Natasha Leporé and Xavier Pennec and Agatha D Lee and Marina Barysheva and Sarah K Madsen and Christina Avedissian and Yi-Yu Chou and de Zubicaray, Greig I. and Katie McMahon and Margaret Wright and Arthur W. Toga and Paul M. Thompson}, JOURNAL = {NeuroImage}, MONTH = {October}, OPTNOTE = {}, NUMBER = {1}, PAGES = {37-49}, TITLE = {Mapping the Regional Influence of Genetics on Brain Structure Variability - A Tensor-Based Morphometry Study}, VOLUME = {48}, YEAR = {2009}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2009.05.022}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2859973/pdf/nihms126680.pdf}, OPTURL-PUBLISHER = {}, PMID = {19446645}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {US,AU}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{desai:ijrr:2009, AUTHOR = {Jaydev P. Desai and Nicholas Ayache}, JOURNAL = {International Journal of Robotics Research}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {9}, PAGES = {1099-1100}, TITLE = {Editorial: Special Issue on Medical Robotics}, VOLUME = {28}, YEAR = {2009}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications-tracked/Nicholas.Ayache/AyacheRobotics.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616092}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Durrleman:Media:09, AUTHOR = {Stanley Durrleman and Xavier Pennec and Alain Trouvé and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {October}, OPTNOTE = {}, NUMBER = {5}, PAGES = {793-808}, TITLE = {Statistical Models on Sets of Curves and Surfaces based on Currents}, VOLUME = {13}, YEAR = {2009}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2009.07.007}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Stanley.Durrleman/Durrleman_MedIA_09.pdf}, OPTURL-PUBLISHER = {}, PMID = {19679507}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Hufnagel:MIM:09, AUTHOR = {Heike Hufnagel and Jan Ehrhardt and Xavier Pennec and Nicholas Ayache and Heinz Handels}, JOURNAL = {Methods of Information in Medicine}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {314-319}, TITLE = {Computation of a Probabilistic Statistical Shape Model in a Maximum-a-posteriori Framework}, VOLUME = {48}, YEAR = {2009}, OPTABSTRACT = {}, DOI = {10.3414/ME9228}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Heike.Hufnagel/Hufnagel_MIM09.pdf}, OPTURL-PUBLISHER = {}, PMID = {19562228}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {DE}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Klein:NeuroImage:09, AUTHOR = {Arno Klein and Jesper Andersson and Babak A. Ardekani and John Ashburner and Brian Avants and Ming-Chang Chiang and Gary E. Christensen and D. Louis Collins and Pierre Hellier and Joo Hyun Song and Mark Jenkinson and Claude Lepage and Daniel Rueckert and Paul M. Thompson and Tom Vercauteren and Roger P. Woods and J. John Mann and Ramin V. Parsey}, JOURNAL = {NeuroImage}, MONTH = {July}, OPTNOTE = {}, NUMBER = {3}, PAGES = {786--802}, TITLE = {Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration}, VOLUME = {46}, YEAR = {2009}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2008.12.037}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Tom.Vercauteren/Eval14NonlinearRegistration-Klein-NeuroImage09.pdf}, URL-PUBLISHER = {http://www.mindboggle.info/papers/}, PMID = {19195496}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {US,GB,CA}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://www.hal.inserm.fr/inserm-00360790}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Nicolau:Media:09, AUTHOR = {S. Nicolau and Xavier Pennec and Luc Soler and X. Buy and A. Gangi and Nicholas Ayache and J. Marescaux}, JOURNAL = {Medical Image Analysis}, MONTH = {June}, OPTNOTE = {}, NUMBER = {3}, PAGES = {494--506}, TITLE = {An Augmented Reality System for Liver Thermal Ablation: Design and Evaluation on Clinical Cases}, VOLUME = {13}, YEAR = {2009}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2009.02.003}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Nicolau_MEDIA_09.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pop:2009:MedIA, AUTHOR = {Mihaela Pop and Maxime Sermesant and D Lepiller and M V Truong and Elliot McVeigh and Eugene Crystal and Alexander Dick and Hervé Delingette and Nicholas Ayache and Graham Wright}, JOURNAL = {Medical Image Analysis}, MONTH = {April}, OPTNOTE = {}, NUMBER = {2}, PAGES = {370-80}, TITLE = {Fusion of optical imaging and MRI for the evaluation and adjustment of macroscopic models of cardiac electrophysiology: A feasibility study}, VOLUME = {13}, YEAR = {2009}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/MEDIA2008Pop.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {GB,US,CA}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616087}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{sims:ro:2009, AUTHOR = {R Sims and A Isambert and V Gregoire and F Bidault and L Fresco and J Sage and J Mills and J Bourhis and D Lefkopoulos and Olivier Commowick and M Benkebil and Grégoire Malandain}, JOURNAL = {Radiotherapy Oncology}, MONTH = {December}, OPTNOTE = {}, NUMBER = {3}, PAGES = {474-8}, TITLE = {A pre-clinical assessment of an atlas-based automatic segmentation tool for the head and neck}, VOLUME = {93}, YEAR = {2009}, ABSTRACT = {BACKGROUND AND PURPOSE: Accurate conformal radiotherapy treatment requires manual delineation of target volumes and organs at risk (OAR) that is both time-consuming and subject to large inter-user variability. One solution is atlas-based automatic segmentation (ABAS) where a priori information is used to delineate various organs of interest. The aim of the present study is to establish the accuracy of one such tool for the head and neck (H&N) using two different evaluation methods. MATERIALS AND METHODS: Two radiotherapy centres were provided with an ABAS tool that was used to outline the brainstem, parotids and mandible on several patients. The results were compared to manual delineations for the first centre (EM1) and reviewed/edited for the second centre (EM2), both of which were deemed as equally valid gold standards. The contours were compared in terms of their volume, sensitivity and specificity with the results being interpreted using the Dice similarity coefficient and a receiver operator characteristic (ROC) curve. RESULTS: Automatic segmentation took typically approximately 7min for each patient on a standard PC. The results indicated that the atlas contour volume was generally within +/-1SD of each gold standard apart from the parotids for EM1 and brainstem for EM2 that were over- and under-estimated, respectively (within +/-2SD). The similarity of the atlas contours with their respective gold standard was satisfactory with an average Dice coefficient for all OAR of 0.68+/-0.25 for EM1 and 0.82+/-0.13 for EM2. All data had satisfactory sensitivity and specificity resulting in a favourable position in ROC space. CONCLUSIONS: These tests have shown that the ABAS tool exhibits satisfactory sensitivity and specificity for the OAR investigated. There is, however, a systematic over-segmentation of the parotids (EM1) and under-segmentation of the brainstem (EM2) that require careful review and editing in the majority of cases. Such issues have been discussed with the software manufacturer and a revised version is due for release.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/sims-ro-2009.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {GB,BE,CA}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616090}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Souplet:RevNeurol:09, AUTHOR = {Jean-Christophe Souplet and Christine Lebrun and Stéphane Chanalet and Nicholas Ayache and Grégoire Malandain}, JOURNAL = {Revue Neurologique}, OPTMONTH = {}, NOTE = {In french}, NUMBER = {1}, PAGES = {7--14}, TITLE = {Revue des approches de segmentation des lésions de sclérose en plaques dans les séquences conventionnelles IRM}, VOLUME = {165}, YEAR = {2009}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Jean-Christophe.Souplet/souplet-rn-2009.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {no}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Vercauteren:NeuroImage:09, AUTHOR = {Tom Vercauteren and Xavier Pennec and Aymeric Perchant and Nicholas Ayache}, JOURNAL = {NeuroImage}, MONTH = {March}, OPTNOTE = {}, NUMBER = {1, Supp.1}, PAGES = {S61--S72}, TITLE = {Diffeomorphic Demons: Efficient Non-parametric Image Registration}, VOLUME = {45}, YEAR = {2009}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2008.10.040}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Tom.Vercauteren/DiffeoDemons-NeuroImage08-Vercauteren.pdf}, OPTURL-PUBLISHER = {}, PMID = {19041946}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inserm-00349600/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Yeo:TMI:09, AUTHOR = {Boon Thye Thomas Yeo and Tom Vercauteren and Pierre Fillard and Jean-Marc Peyrat and Xavier Pennec and Polina Golland and Nicholas Ayache and Olivier Clatz}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {December}, NOTE = {PMID:19556193}, NUMBER = {12}, PAGES = {1914--1928}, TITLE = {DT-REFinD: Diffusion Tensor Registration with Exact Finite-Strain Differential}, VOLUME = {28}, YEAR = {2009}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2009.2025654}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://people.csail.mit.edu/ythomas/publications/2009DTI-TMI.pdf}, URL-PUBLISHER = {http://sites.google.com/site/yeoyeo02/software/dt-refindcode}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {US}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00502720/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{ayache:kahn:2009, OPTADDRESS = {}, AUTHOR = {Nicholas Ayache and Olivier Clatz and Hervé Delingette and Grégoire Malandain and Xavier Pennec and Maxime Sermesant}, BOOKTITLE = {From semantics to computer science: essays in honor of Gilles Kahn}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Y. Bertot and G. Huet and J.-J. Lévy and G. Plotkin}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {415-436}, PUBLISHER = {Cambridge University Press}, OPTSERIES = {}, TITLE = {Asclepios: a Research Project-Team at INRIA for the Analysis and Simulation of Biomedical Images}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2009}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/Colloquium-Gilles-Kahn-NA-2007-v5.pdf}, URL-PUBLISHER = {http://www.cambridge.org/catalogue/catalogue.asp?isbn=9780521518253}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616094}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Germain:HRCG:09, OPTADDRESS = {}, AUTHOR = {C. Germain-Renaud and V. Breton and P. Clarysse and B. Delhay and Y. Gaudeau and T. Glatard and E. Jannot and Y. Legré and Johan Montagnat and J.-M. Moureau and A. Osorio and Xavier Pennec and J. Schaerer and R. Texier}, BOOKTITLE = {Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine, and Healthcare}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Mario Cannataro}, OPTMONTH = {}, NOTE = {IGI-Global Medical Information Science Discoveries Research Award 2009}, OPTNUMBER = {}, PAGES = {363-391}, PUBLISHER = {IGI Global}, OPTSERIES = {}, TITLE = {Grid Analysis of Radiological Data}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2009}, OPTABSTRACT = {}, DOI = {10.4018/978-1-60566-374-6.ch019}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.igi-global.com/Bookstore/Chapter.aspx?TitleId=35703}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.archives-ouvertes.fr/hal-00683992}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Mansi:3DPH:08, OPTADDRESS = {}, AUTHOR = {Tommaso Mansi and Barbara André and Michael Lynch and Maxime Sermesant and Hervé Delingette and Younes Boudjemline and Nicholas Ayache}, BOOKTITLE = {Recent Advances in the 3D Physiological Human}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Nadia Magnenat-Thalmann and Jian J. Zhang and David D. Feng}, MONTH = {November}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {201-210}, PUBLISHER = {Springer}, OPTSERIES = {}, TITLE = {Virtual Pulmonary Valve Replacement Interventions with a Personalised Cardiac Electromechanical Model}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2009}, OPTABSTRACT = {}, OPTDOI = {}, ISBN = {978-1-84882-564-2}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Tommaso.Mansi/mansi093DPH.pdf}, OPTURL-PUBLISHER = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {yes}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616095}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Schmid:3DPH:08, OPTADDRESS = {}, AUTHOR = {Jérôme Schmid and Anders Sandholm and François Chung and Daniel Thalmann and Hervé Delingette and Nadia Magnenat-Thalmann}, BOOKTITLE = {Recent Advances in the 3D Physiological Human}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Nadia Magnenat-Thalmann and Jian J. Zhang and David D. Feng}, MONTH = {February}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {3-19}, PUBLISHER = {Springer}, OPTSERIES = {}, TITLE = {Musculoskeletal simulation model generation from MRI datasets and motion capture data}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2009}, OPTABSTRACT = {}, OPTDOI = {}, ISBN = {978-1-84882-564-2}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Francois.Chung/musculoskeletal_simulation_model_generation_from_mri_datasets_and_motion_capture_data.pdf}, OPTURL-PUBLISHER = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {CH}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616096}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Seiler:3DPH:09, OPTADDRESS = {}, AUTHOR = {Christof Seiler and P. Büchler and L.-P. Nolte and R. Paulsen and Mauricio Reyes}, BOOKTITLE = {Recent Advances in the 3D Physiological Human}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {N. Magnenat-Thalmann, J. J. Zhang and D. D. Feng}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {133-148}, PUBLISHER = {Springer}, OPTSERIES = {}, TITLE = {Hierarchical Markov Random Fields Applied to Model Soft Tissue Deformations on Graphics Hardware}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2009}, OPTABSTRACT = {}, OPTDOI = {}, ISBN = {978-1-84882-564-2}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-PROCEEDINGS = {yes}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00813746}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Archip:Neurosurgery:08, AUTHOR = {Neculai Archip and Olivier Clatz and Stephen Whalen and Simon Dimaio and Peter Black and Alexandra Golby and Ferenc Jolesz and Simon Warfield}, JOURNAL = {Neurosurgery}, MONTH = {March}, OPTNOTE = {}, NUMBER = {3 supl. 1}, PAGES = {209-15}, TITLE = {Compensation of geometric distortion effects on intraoperative magnetic resonance imaging for enhanced visualization in image-guided neurosurgery}, VOLUME = {62}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616076}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Boisvert:TBME:08, AUTHOR = {Jonathan Boisvert and Farida Cheriet and Xavier Pennec and Hubert Labelle and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Bio-Medical Engineering}, MONTH = {November}, OPTNOTE = {}, NUMBER = {11}, PAGES = {2565--2574}, TITLE = {Articulated Spine Models for 3D Reconstruction from Partial Radiographic Data}, VOLUME = {55}, YEAR = {2008}, OPTABSTRACT = {}, DOI = {10.1109/TBME.2008.2001125}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Boisvert-TBME08.pdf}, OPTURL-PUBLISHER = {}, PMID = {18990626}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {CA}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616069}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Boisvert:TMI:08, AUTHOR = {Jonathan Boisvert and Farida Cheriet and Xavier Pennec and Hubert Labelle and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {557--568}, TITLE = {Geometric Variability of the Scoliotic Spine using Statistics on Articulated Shape Models}, VOLUME = {27}, YEAR = {2008}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2007.911474}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Boisvert.TMI08.pdf}, OPTURL-PUBLISHER = {}, PMID = {18390352}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {CA}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616070}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Boisvert:ELCVIA:08, AUTHOR = {Jonathan Boisvert and Farida Cheriet and Xavier Pennec and Hubert Labelle and Nicholas Ayache}, JOURNAL = {Electronic Letters on Computer Vision and Image Analysis}, MONTH = {December}, OPTNOTE = {}, NUMBER = {4}, PAGES = {13--31}, TITLE = {Principal Deformations Modes of Articulated Models for the Analysis of 3D Spine Deformities}, VOLUME = {7}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Jonathan.Boisvert/Boisvert_ELCVIA08.pdf}, URL-PUBLISHER = {http://elcvia.cvc.uab.es/index.php/elcvia/article/view/165/202}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {CA}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616067}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bondiau:pmb:08, AUTHOR = {Pierre-Yves Bondiau and Olivier Clatz and Maxime Sermesant and Pierre-Yves Marcy and Hervé Delingette and Marc Frenay and Nicholas Ayache}, JOURNAL = {Physics in Medicine and Biology}, MONTH = {February}, OPTNOTE = {}, NUMBER = {4}, PAGES = {879-93}, TITLE = {Biocomputing: numerical simulation of glioblastoma growth using diffusion tensor imaging}, VOLUME = {53}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/PMB2008Bondiau.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616078}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{TMI2008Phani, AUTHOR = {P. Chinchapatnam and K.S. Rhode and M. Ginks and C.A. Rinaldi and P. Lambiase and R. Razavi and S. Arridge and M. Sermesant}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {11}, PAGES = {1631-1642}, TITLE = {Model-Based Imaging of Cardiac Apparent Conductivity and Local Conduction Velocity for Diagnosis and Planning of Therapy}, VOLUME = {27}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/TMI2008Phani.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616071}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{commowick:mia:2008, AUTHOR = {Olivier Commowick and Vincent Arsigny and Aurélie Isambert and Jimena Costa and Frédéric Dhermain and François Bidault and Pierre-Yves Bondiau and Nicholas Ayache and Grégoire Malandain}, JOURNAL = {Medical Image Analysis}, MONTH = {August}, OPTNOTE = {}, NUMBER = {4}, PAGES = {427-41}, TITLE = {An efficient locally affine framework for the smooth registration of anatomical structures}, VOLUME = {12}, YEAR = {2008}, ABSTRACT = {Intra-subject and inter-subject nonlinear registration based on dense transformations requires the setting of many parameters, mainly for regularization. This task is a major issue, as the global quality of the registration will depend on it. Setting these parameters is, however, very hard, and they may have to be tuned for each patient when processing data acquired by different centers or using different protocols. Thus, we present in this article a method to introduce more coherence in the registration by using fewer degrees of freedom than with a dense registration. This is done by registering the images only on user-defined areas, using a set of affine transformations, which are optimized together in a very efficient manner. Our framework also ensures a smooth and coherent transformation thanks to a new regularization of the affine components. Finally, we ensure an invertible transformation thanks to the Log-Euclidean polyaffine framework. This allows us to get a more robust and very efficient registration method, while obtaining good results as explained below. We performed a qualitative and quantitative evaluation of the obtained results on two applications: first on atlas-based brain segmentation, comparing our results with a dense registration algorithm. Then the second application for which our framework is particularly well suited concerns bone registration in the lower-abdomen area. We obtain in this case a better positioning of the femoral heads than with a dense registration. For both applications, we show a significant improvement in computation time, which is crucial for clinical applications.}, DOI = {10.1016/j.media.2008.01.002}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Algorithms, Brain, anatomy & histology, Diagnostic Imaging, methods, Humans, Image Processing Computer-Assisted, Radiotherapy Planning Computer-Assisted, methods, Sensitivity and Specificity}, URL = {https://www-sop.inria.fr/asclepios/Publications/Olivier.Commowick/CommowickMedia2008.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616074}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Commowick_RO_2008, AUTHOR = {Olivier Commowick and Vincent Grégoire and Grégoire Malandain}, JOURNAL = {Radiotherapy Oncology}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {281-289}, TITLE = {Atlas-Based Delineation of Lymph Node Levels in Head and Neck Computed Tomography Images}, VOLUME = {87}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Olivier.Commowick/CommowickRO2008.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616080}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{delingette:tvcg:2008, AUTHOR = {H. Delingette}, JOURNAL = {IEEE Transactions on Visualization and Computer Graphics}, MONTH = {March/April}, OPTNOTE = {}, NUMBER = {2}, OPTPAGES = {}, TITLE = {Triangular Springs for Modeling Nonlinear Membranes}, VOLUME = {14}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/tvcg-membrane.pdf}, URL-PUBLISHER = {http://doi.ieeecomputersociety.org/10.1109/TVCG.2007.70431}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616072}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Durrleman:Media:08, AUTHOR = {Stanley Durrleman and Xavier Pennec and Alain Trouvé and Paul Thompson and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {5}, PAGES = {626--637}, TITLE = {Inferring brain variability from diffeomorphic deformations of currents: an integrative approach}, VOLUME = {12}, YEAR = {2008}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2008.06.010}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Stanley.Durrleman/Durrleman_Media08.pdf}, OPTURL-PUBLISHER = {}, PMID = {18658005}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {US}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/hal-00816052}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{glatard-montagnat-etal:2007b, AUTHOR = {Tristan Glatard and Johan Montagnat and David Emsellem and Diane Lingrand}, JOURNAL = {Future Generation Computer Systems}, MONTH = {July}, OPTNOTE = {}, NUMBER = {24}, PAGES = {720--730}, TITLE = {A Service-Oriented Architecture enabling dynamic services grouping for optimizing distributed workflows execution}, VOLUME = {7}, YEAR = {2008}, OPTABSTRACT = {}, DOI = {10.1016/j.future.2008.02.011}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.archives-ouvertes.fr/hal-00459808}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Glatard:IJHPCA:08, AUTHOR = {Tristan Glatard and Johan Montagnat and Diane Lingrand and Xavier Pennec}, JOURNAL = {International Journal of High Performance Computing Applications}, MONTH = {August}, NOTE = {Special issue on Workflow Systems in Grid Environments}, NUMBER = {22}, PAGES = {347--360}, TITLE = {Flexible and efficient workflow deployment of data-intensive applications on GRIDS with MOTEUR}, VOLUME = {3}, YEAR = {2008}, OPTABSTRACT = {}, DOI = {10.1177/1094342008096067}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://rainbow.polytech.unice.fr/publis/glatard-montagnat-etal:2008.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{haik:an:2008, AUTHOR = {S Haik and D Galanaud and MG Linguraru and K Peoc'h and N Privat and BA Faucheux and N Ayache and JJ Hauw and D Dormont and JP Brandel}, JOURNAL = {Archives of Neurology}, MONTH = {April}, OPTNOTE = {}, NUMBER = {4}, PAGES = {545-549}, TITLE = {In Vivo Detection of Thalamic Gliosis: A Pathoradiologic Demonstration in Familial Fatal Insomnia}, VOLUME = {65}, YEAR = {2008}, ABSTRACT = {BACKGROUND: Increasing evidence supports the usefulness of brain magnetic resonance imaging (MRI) for the diagnosis of human prion diseases. From the neuroradiological point of view, fatal familial insomnia is probably the most challenging to diagnose because brain lesions are mostly confined to the thalamus. OBJECTIVE: To determine whether multisequence MRI of the brain can show thalamic alterations and establish pathoradiologic correlations in a patient with familial fatal insomnia. DESIGN: Radioclinical prospective study. We describe a patient with fatal familial insomnia and normal MRI images. Because the MRI study was performed only 4 days before the patient's death, we were able to compare radiological data with the lesions observed at the neuropathologic level. Patient A 55-year-old man with familial fatal insomnia. Main Outcome Measure Magnetic resonance spectroscopy combined with the measurement of apparent diffusion coefficient of water in different brain areas. RESULTS: The neuroradiological study showed, in the thalamus but not in the other brain regions studied, an increase of apparent diffusion coefficient of water and a metabolic pattern indicating gliosis. These alterations closely correlated with neuropathologic data showing an almost pure gliosis that was restricted to the thalami. CONCLUSION: Considering fatal familial insomnia as a model of thalamic-restricted gliosis, this case demonstrates that multisequences of magnetic resonance can detect prion-induced gliosis in vivo, as confirmed by a neuropathologic examination performed only a few days after radiological examination.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/HaikAN2008.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616065}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Hufnagel:ijcars:2008, AUTHOR = {H. Hufnagel and X. Pennec and J. Ehrhardt and N. Ayache and H. Handels}, JOURNAL = {International Journal for Computer Assisted Radiology and Surgery}, MONTH = {March}, OPTNOTE = {}, NUMBER = {5}, PAGES = {265--273}, TITLE = {Generation of a Statistical Shape Model with Probabilistic Point Correspondences and EM-ICP}, VOLUME = {2}, YEAR = {2008}, OPTABSTRACT = {}, DOI = {10.1007/s11548-007-0138-9}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Heike.Hufnagel/hufnagel_IJCARS.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {DE}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616073}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{isambert:cr:2008, AUTHOR = {A Isambert and G Bonniaud and F Lavielle and G Malandain and D Lefkopoulos}, JOURNAL = {Cancer radiothérapie}, MONTH = {December}, OPTNOTE = {}, NUMBER = {8}, PAGES = {800-8}, TITLE = {A phantom study of the accuracy of CT, MR and PET image registrations with a block matching-based algorithm}, VOLUME = {12}, YEAR = {2008}, ABSTRACT = {PURPOSE: The aim of the present study was to quantitatively assess the performance of a block matching-based automatic registration algorithm integrated within the commercial treatment planning system designated ISOgray from Dosisoft. The accuracy of the process was evaluated by a phantom study on computed tomography (CT), magnetic resonance (MR) and positron emission tomography (PET) images. MATERIALS AND METHODS: Two phantoms were used to carry out this study: the cylindrical Jaszczak phantom and the anthropomorphic Liqui-Phil Head Phantom (the Phantom Laboratory), containing fillable spheres. External fiducial markers were used to quantify the accuracy of 41 CT/CT, MR/CT and PET/CT automatic registrations with images of the rotated and tilted phantoms. RESULTS: The study first showed that a cylindrical phantom was not adapted for the evaluation of the performance of a block matching-based registration software. Secondly, the Liqui-Phil Head Phantom study showed that the algorithm was able to perform automatic registrations of CT/CT and MR/CT images with differences of up to 40 degrees in phantom rotation and of up to 20-30 degrees for PET/CT with accuracy below the image voxel size. CONCLUSION: The study showed that the block matching-based automatic registration software under investigation was robust, reliable and yielded very satisfactory results. This phantom-based test can be integrated into a periodical quality assurance process and used for any commissioning of image registration software for radiation therapy.}, DOI = {10.1016/j.canrad.2008.04.009}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Algorithms, Automation, Brain, pathology, Head, Humans, Magnetic Resonance Imaging, methods, Phantoms Imaging, Positron-Emission Tomography, methods, Radiotherapy Planning Computer-Assisted, methods, Software, Tomography X-Ray Computed, methods}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/isambert-cr-2008.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616066}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{isambert:ro:2008, AUTHOR = {Aurélie Isambert and Frédéric Dhermain and François Bidault and Olivier Commowick and Pierre-Yves Bondiau and Grégoire Malandain and Dimitri Lefkopoulos}, JOURNAL = {Radiotherapy Oncology}, MONTH = {April}, OPTNOTE = {}, NUMBER = {1}, PAGES = {93-9}, TITLE = {Evaluation of an atlas-based automatic segmentation software for the delineation of brain organs at risk in a radiation therapy clinical context}, VOLUME = {87}, YEAR = {2008}, ABSTRACT = {BACKGROUND AND PURPOSE: Conformal radiation therapy techniques require the delineation of volumes of interest, a time-consuming and operator-dependent task. In this work, we aimed to evaluate the potential interest of an atlas-based automatic segmentation software (ABAS) of brain organs at risk (OAR), when used under our clinical conditions. MATERIALS AND METHODS: Automatic and manual segmentations of the eyes, optic nerves, optic chiasm, pituitary gland, brain stem and cerebellum of 11 patients on T1-weighted magnetic resonance, 3-mm thick slice images were compared using the Dice similarity coefficient (DSC). The sensitivity and specificity of the ABAS were also computed and analysed from a radiotherapy point of view by splitting the ROC (Receiver Operating Characteristic) space into four sub-regions. RESULTS: Automatic segmentation of OAR was achieved in 7-8 min. Excellent agreement was obtained between automatic and manual delineations for organs exceeding 7 cm3: the DSC was greater than 0.8. For smaller structures, the DSC was lower than 0.41. CONCLUSIONS: These tests demonstrated that this ABAS is a robust and reliable tool for automatic delineation of large structures under clinical conditions in our daily practice, even though the small structures must continue to be delineated manually by an expert.}, DOI = {10.1016/j.radonc.2007.11.030}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Algorithms, Brain Neoplasms, pathology, Female, Humans, Image Interpretation Computer-Assisted, methods, Magnetic Resonance Imaging, Male, Middle Aged, ROC Curve, Retrospective Studies, Software, Tomography X-Ray Computed}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/isambert-ro-2008.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616079}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Mandonnet:NSR:08, AUTHOR = {Emmanuel Mandonnet and Johan Pallud and Olivier Clatz and Hugues Duffau and Laurent Capelle}, JOURNAL = {Neurosurgical Review}, MONTH = {July}, OPTNOTE = {}, NUMBER = {3}, PAGES = {263-9}, TITLE = {Computational Modelling of the WHO Grade II Glioma Dynamics: Principles and Applications to Surgical Strategy}, VOLUME = {31}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616077}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Montagnat:JGC:2008, AUTHOR = {Johan Montagnat and Tristan Glatard and Campos Plasencia, Isabel and Francisco Castejon and Xavier Pennec and Giuliano Taffoni and Vladimir Voznesensky and Claudio Vuerli}, JOURNAL = {Journal of Grid Computing}, MONTH = {December}, OPTNOTE = {}, NUMBER = {4}, PAGES = {369-383}, TITLE = {Workflow-based data parallel applications on the EGEE production grid infrastructure}, VOLUME = {6}, YEAR = {2008}, OPTABSTRACT = {}, DOI = {10.1007/s10723-008-9108-x}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {ES,IT,RU}, X-SCIENTIFIC-POPULARIZATION = {no}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.archives-ouvertes.fr/hal-00683983}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{rutgers:aajn:2008, AUTHOR = {D R Rutgers and P Fillard and G Paradot and M Tadie and P Lasjaunias and D Ducreux}, JOURNAL = {AJNR. American journal of neuroradiology}, MONTH = {October}, OPTNOTE = {}, NUMBER = {9}, PAGES = {1730-5}, TITLE = {Diffusion tensor imaging characteristics of the corpus callosum in mild, moderate, and severe traumatic brain injury}, VOLUME = {29}, YEAR = {2008}, ABSTRACT = {BACKGROUND AND PURPOSE: The corpus callosum is an important predilection site for traumatic axonal injury but may be unevenly affected in head trauma. We hypothesized that there were local differences in axonal injury within the corpus callosum as investigated with diffusion tensor imaging (DTI), varying among patients with differing severity of traumatic brain injury (TBI). MATERIALS AND METHODS: Ethics committee approval and informed consent were obtained. Ten control subjects (7 men, 3 women; mean age, 37 +/- 9 years) and 39 patients with TBI (27 men, 12 women; 34 +/- 12 years) were investigated, of whom 24 had mild; 9, moderate; and 6, severe TBI. Regions of interest were selected in the callosal genu, body, and splenium to calculate fractional anisotropy (FA), apparent diffusion coefficient (ADC), and the number of fibers passing through. Statistical comparison was made through analysis of variance with the Scheffe post hoc analysis. RESULTS: Compared with controls, patients with mild TBI investigated <3 months posttrauma (n = 12) had reduced FA (P < .01) and increased ADC (P < .05) in the genu, whereas patients with mild TBI investigated > or =3 months posttrauma (n = 12) showed no significant differences. Patients with moderate and severe TBI, all investigated <3 months posttrauma, had reduced FA (P < .001) and increased ADC (P < .01) in the genu compared with controls and reduced FA in the splenium (P < .001) without significant ADC change. CONCLUSION: Mild TBI is associated with DTI abnormalities in the genu <3 months posttrauma. In more severe TBI, both the genu and splenium are affected. DTI suggests a larger contribution of vasogenic edema in the genu than in the splenium in TBI.}, DOI = {10.3174/ajnr.A1213}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Adult, Anisotropy, Brain Concussion, diagnosis, Brain Injuries, diagnosis, Corpus Callosum, injuries, Diffuse Axonal Injury, diagnosis, Diffusion Magnetic Resonance Imaging, Female, Follow-Up Studies, Humans, Image Processing Computer-Assisted, Male, Middle Aged, Nerve Fibers, pathology, Young Adult}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00502705}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{rutgers:aajn:2008:b, AUTHOR = {D R Rutgers and F Toulgoat and J Cazejust and P Fillard and P Lasjaunias and D Ducreux}, JOURNAL = {AJNR. American journal of neuroradiology}, MONTH = {March}, OPTNOTE = {}, NUMBER = {3}, PAGES = {514-9}, TITLE = {White matter abnormalities in mild traumatic brain injury: a diffusion tensor imaging study}, VOLUME = {29}, YEAR = {2008}, ABSTRACT = {BACKGROUND AND PURPOSE: Traumatic axonal injury is a primary brain abnormality in head trauma and is characterized by reduction of fractional anisotropy (FA) on diffusion tensor imaging (DTI). Our hypothesis was that patients with mild traumatic brain injury (TBI) have widespread brain white matter regions of reduced FA involving a variety of fiber bundles and show fiber disruption on fiber tracking in a minority of these regions. MATERIALS AND METHODS: Ethics committee approval and informed consent were obtained. Twenty-one patients with mild TBI were investigated (men:women, 12:9; mean age +/- SD, 32 +/- 9 years). In a voxel-based comparison with 11 control subjects (men:women, 8:3; mean age, 37 +/- 9 years) using z score analysis, patient regions with abnormally reduced FA were defined in brain white matter. MR imaging, DTI, and fiber tracking characteristics of these regions were described and analyzed using Pearson correlation, linear regression analysis, or the chi(2) test when appropriate. RESULTS: Patients had on average 9.1 regions with reduced FA, with a mean region volume of 525 mm(3), predominantly found in cerebral lobar white matter, cingulum, and corpus callosum. These regions mainly involved supratentorial projection fiber bundles, callosal fibers, and fronto-temporo-occipital association fiber bundles. Internal capsules and infratentorial white matter were relatively infrequently affected. Of all of the involved fiber bundles, 19.3% showed discontinuity on fiber tracking. CONCLUSION: Patients with mild TBI have multiple regions with reduced FA in various white matter locations and involving various fiber bundles. A minority of these fiber bundles show discontinuity on fiber tracking.}, DOI = {10.3174/ajnr.A0856}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Adult, Brain, pathology, Brain Injuries, pathology, Demyelinating Diseases, pathology, Diffusion Magnetic Resonance Imaging, methods, Female, Humans, Male, Nerve Fibers Myelinated, pathology, Reproducibility of Results, Sensitivity and Specificity}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00502701}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Sermesant:2008:Heart-Fail-Clin:18598981, AUTHOR = {M Sermesant and J M Peyrat and P Chinchapatnam and F Billet and T Mansi and K Rhode and H Delingette and R Razavi and N Ayache}, JOURNAL = {Heart Failure Clinics}, MONTH = {July}, OPTNOTE = {}, NUMBER = {3}, PAGES = {289-301}, TITLE = {Toward patient-specific myocardial models of the heart}, VOLUME = {4}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/HFC2008Sermesant.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {yes}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616068}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Konukoglu:HMIP:08, OPTADDRESS = {}, AUTHOR = {Ender Konukoglu and Xavier Pennec and Olivier Clatz and Nicholas Ayache}, BOOKTITLE = {Handbook of Medical Image Processing and Analysis - New edition}, CHAPTER = {18}, OPTEDITION = {}, EDITOR = {I. Bankman}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {297--307}, PUBLISHER = {Academic Press}, OPTSERIES = {}, TITLE = {Tumor Growth Modeling in Oncological Image Analysis}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, ISBN = {13: 978-0-12-373904-9}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Ender.Konukoglu/tumor_growth_in_image_analysis.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616081}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Pennec:ETCV:08, OPTADDRESS = {}, AUTHOR = {X. Pennec}, BOOKTITLE = {Emerging Trends in Visual Computing}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Frank Nielsen}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {347--386}, PUBLISHER = {Springer}, SERIES = {LNCS}, TITLE = {Statistical computing on manifolds: from Riemannian geometry to computational anatomy}, OPTTYPE = {}, VOLUME = {5416}, YEAR = {2008}, OPTABSTRACT = {}, DOI = {DOI: 10.1007/978-3-642-00826-9_16}, ISBN = {978-3-642-00825-2}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec_ETVC08.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616104}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Pennec:HMIP:08, OPTADDRESS = {}, AUTHOR = {Xavier Pennec and Nicholas Ayache and Jean-Philippe Thirion}, BOOKTITLE = {Handbook of Medical Image Processing and Analysis - New edition}, CHAPTER = {34}, OPTEDITION = {}, EDITOR = {I. Bankman}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {565--578}, PUBLISHER = {Academic Press}, OPTSERIES = {}, TITLE = {Landmark-based registration using features identified through differential geometry}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, ISBN = {13: 978-0-12-373904-9}, OPTISSN = {}, KEYWORDS = {registration, matching, validation, uncertainty}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.HMIP08.pdf}, OPTURL-PUBLISHER = {}, X-INTERNATIONAL-AUDIENCE = {yes}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616082}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Vercauteren:MIALSA:08, OPTADDRESS = {}, AUTHOR = {Tom Vercauteren and Nicholas Ayache and Nicolas Savoire and Grégoire Malandain and Aymeric Perchant}, BOOKTITLE = {Microscopic Image Analysis for Life Science Applications}, CHAPTER = {19}, OPTEDITION = {}, EDITOR = {Jens Rittscher and Raghu Machiraju and Stephen T. C. Wong}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {441--463}, PUBLISHER = {Artech House}, OPTSERIES = {}, TITLE = {Processing of In Vivo Fibered Confocal Microscopy Video Sequences}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2008}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Tom.Vercauteren/ProcessingInVivoFCM-Vercauteren-Chap19MIALSA08.pdf}, URL-PUBLISHER = {http://www.artechhouse.com/Detail.aspx?strIsbn=978-1-59693-236-4}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616083}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Angelini:CMIR:07, AUTHOR = {Elsa Angelini and Olivier Clatz and Emmanuel Mandonnet and Ender Konukoglu and Laurent Capelle and Hugues Duffau}, JOURNAL = {Current Medical Imaging Reviews}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {262-176}, TITLE = {Glioma Dynamics and Computational Models: A Review of Segmentation, Registration, and In Silico Growth Algorithms and their Clinical Applications}, VOLUME = {3}, YEAR = {2007}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Olivier.Clatz/Angelini_Clatz_CMIR_2007.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616021}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Archip:NI:06, AUTHOR = {Neculai Archip and Olivier Clatz and Stephen Whalen and Dan Kacher and Andriy Fedorov and Andriy Kot and Nikos Chrisochoides and Ferenc Jolesz and Alexandra Golby and Peter Black and Simon Warfield}, JOURNAL = {NeuroImage}, MONTH = {April}, OPTNOTE = {}, NUMBER = {2}, PAGES = {609-24}, TITLE = {Non-rigid alignment of preoperative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery}, VOLUME = {35}, YEAR = {2007}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Olivier.Clatz/Archip-Clatz-Neuroimage.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616028}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Arsigny:Siam:07, AUTHOR = {Vincent Arsigny and Pierre Fillard and Xavier Pennec and Nicholas Ayache}, JOURNAL = {SIAM Journal on Matrix Analysis and Applications}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {328--347}, TITLE = {Geometric Means in a Novel Vector Space Structure on Symmetric Positive-Definite Matrices}, VOLUME = {29}, YEAR = {2007}, OPTABSTRACT = {}, DOI = {10.1137/050637996}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics}, URL = {https://www-sop.inria.fr/asclepios/Publications/Vincent.Arsigny/Arsigny_SIAM_tensors_07.pdf}, URL-PUBLISHER = {http://www.siam.org/journals/simax/29-1/63799.html}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616031}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{audette:cas:2007, AUTHOR = {M. A. Audette and H. Delingette and A. Fuchs and O. Burgert and K. Chinzei}, JOURNAL = {Journal of Computer Aided Surgery}, MONTH = {January}, OPTNOTE = {}, NUMBER = {1}, PAGES = {43--52}, TITLE = {A topologically faithful, tissue-guided, spatially varying meshing strategy for computing patient-specific head models for endoscopic pituitary surgery simulation}, VOLUME = {12}, YEAR = {2007}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.informaworld.com/10.1080/10929080601167413}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615611}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Becker:GIE:07, AUTHOR = {Valentin Becker and Tom Vercauteren and von Weyern, Claus Hann and Christian Prinz and Roland M. Schmid and Alexander Meining}, JOURNAL = {Gastrointestinal Endoscopy}, MONTH = {November}, OPTNOTE = {}, NUMBER = {5}, PAGES = {1001--1007}, TITLE = {High Resolution Miniprobe-based Confocal Microscopy in Combination with Video-mosaicing}, VOLUME = {66}, YEAR = {2007}, OPTABSTRACT = {}, DOI = {10.1016/j.gie.2007.04.015}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PMID = {17767932}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616022}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Clatz:TBME:07, AUTHOR = {Olivier Clatz and Stéphane Litrico and Hervé Delingette and Philippe Paquis and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Bio-Medical Engineering}, MONTH = {April}, OPTNOTE = {}, NUMBER = {4}, PAGES = {755-758}, TITLE = {Dynamic Model of Communicating Hydrocephalus for Surgery Simulation}, VOLUME = {54}, YEAR = {2007}, OPTABSTRACT = {}, DOI = {10.1109/TBME.2006.890146}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Clatz/hydrocephalus_clatz.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00080553}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Dauguet:Neuroscience:2007, AUTHOR = {Julien Dauguet and Thierry Delzescaux and Françoise Condé and Jean-François Mangin and Nicholas Ayache and Philippe Hantraye and Vincent Frouin}, JOURNAL = {Journal of Neuroscience Methods}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {191-204}, TITLE = {Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain}, VOLUME = {164}, YEAR = {2007}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Julien.Dauguet/dauguet07.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616027}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Fillard:NCNAM:2007, AUTHOR = {D. Ducreux and P. Fillard and D. Facon and A. Ozanne and J.-F. Lepeintre and J. Renoux and M. Tadié and P. Lasjaunias}, JOURNAL = {Neuroimaging Clinics of North America}, MONTH = {February}, OPTNOTE = {}, NUMBER = {1}, PAGES = {137-147}, TITLE = {Diffusion Tensor Magnetic Resonance Imaging and Fiber Tracking in Spinal Cord Lesions: Current and Future Indications}, VOLUME = {17}, YEAR = {2007}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00502689/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Fillard:NeuroImage:06, AUTHOR = {Pierre Fillard and Vincent Arsigny and Xavier Pennec and Kiralee M. Hayashi and Paul M. Thompson and Nicholas Ayache}, JOURNAL = {NeuroImage}, MONTH = {January}, NOTE = {Also as INRIA Research Report 5887, April 2006. PMID: 17113311}, NUMBER = {2}, PAGES = {639--650}, TITLE = {Measuring Brain Variability by Extrapolating Sparse Tensor Fields Measured on Sulcal Lines}, VOLUME = {34}, YEAR = {2007}, OPTABSTRACT = {}, DOI = {10.1016/j.neuroimage.2006.09.027}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Pierre.Fillard/Fillard.Neuroimage.2006.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00071381}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Fillard:TMI:2007, AUTHOR = {Pierre Fillard and Xavier Pennec and Vincent Arsigny and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {November}, OPTNOTE = {}, NUMBER = {11}, PAGES = {1472--1482}, TITLE = {Clinical DT-MRI Estimation, Smoothing and Fiber Tracking with Log-Euclidean Metrics}, VOLUME = {26}, YEAR = {2007}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2007.899173}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Pierre.Fillard/Fillard.TMI.2007.pdf}, OPTURL-PUBLISHER = {}, PMID = {18041263}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00502645/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Linguraru:ijccc:07, AUTHOR = {Marius G. Linguraru and González Ballester, Miguel A. and Nicholas Ayache}, JOURNAL = {International Journal of Computers, Communication and Control}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {26--36}, TITLE = {Deformable Atlases for the Segmentation of Internal Brain Nuclei in Magnetic Resonance Imaging}, VOLUME = {2}, YEAR = {2007}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://mglinguraru.googlepages.com/IJCCC2007.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616025}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Linguraru:BRJ:07, AUTHOR = {Marius George Linguraru and Tom Vercauteren and Reyes Aguirre, Mauricio and González Ballester, Miguel Ángel and Nicholas Ayache}, JOURNAL = {Brain Research Journal}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {269--287}, PUBLISHER = {Nova Science Publishers}, TITLE = {Segmentation Propagation from Deformable Atlases for Brain Mapping and Analysis}, VOLUME = {1}, YEAR = {2007}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Tom.Vercauteren/SegPropDefAtlas-BRJ07-Linguraru.pdf}, URL-PUBLISHER = {https://www.novapublishers.com/catalog/product_info.php?products_id=7148}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616020}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Peyrat:TMI:2007, AUTHOR = {Jean-Marc Peyrat and Maxime Sermesant and Xavier Pennec and Hervé Delingette and Chenyang Xu and Eliot R. McVeigh and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {November}, OPTNOTE = {}, NUMBER = {11}, PAGES = {1500-1514}, TITLE = {A Computational Framework for the Statistical Analysis of Cardiac Diffusion Tensors: Application to a Small Database of Canine Hearts}, VOLUME = {26}, YEAR = {2007}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2007.907286}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Jean-Marc.Peyrat/Peyrat_2007_TMI.pdf}, OPTURL-PUBLISHER = {}, PMID = {18041265}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616023}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{pitiot:ijcv:2007, AUTHOR = {A. Pitiot and H. Delingette and P.M. Thompson}, JOURNAL = {International Journal of Computer Vision}, MONTH = {January}, OPTNOTE = {}, NUMBER = {1}, PAGES = {71-88}, TITLE = {Learning Shape Correspondence for n-D curves}, VOLUME = {71}, YEAR = {2007}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616024}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{reyes:pmb:2007, AUTHOR = {M Reyes and G Malandain and P M Koulibaly and M A Gonzalez-Ballester and J Darcourt}, JOURNAL = {Physics in Medicine and Biology}, MONTH = {June}, OPTNOTE = {}, NUMBER = {12}, PAGES = {3579-600}, TITLE = {Model-based respiratory motion compensation for emission tomography image reconstruction}, VOLUME = {52}, YEAR = {2007}, ABSTRACT = {In emission tomography imaging, respiratory motion causes artifacts in lungs and cardiac reconstructed images, which lead to misinterpretations, imprecise diagnosis, impairing of fusion with other modalities, etc. Solutions like respiratory gating, correlated dynamic PET techniques, list-mode data based techniques and others have been tested, which lead to improvements over the spatial activity distribution in lungs lesions, but which have the disadvantages of requiring additional instrumentation or the need of discarding part of the projection data used for reconstruction. The objective of this study is to incorporate respiratory motion compensation directly into the image reconstruction process, without any additional acquisition protocol consideration. To this end, we propose an extension to the maximum likelihood expectation maximization (MLEM) algorithm that includes a respiratory motion model, which takes into account the displacements and volume deformations produced by the respiratory motion during the data acquisition process. We present results from synthetic simulations incorporating real respiratory motion as well as from phantom and patient data.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/reyes-pmb-2007.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616030}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Thiberville:AJRCCM:06, AUTHOR = {Luc Thiberville and Sophie Moreno-Swirc and Tom Vercauteren and Eric Peltier and Charlotte Cavé and Bourg Heckly, Geneviève}, JOURNAL = {American journal of respiratory and critical care medicine}, MONTH = {January}, NOTE = {Chosen for the cover of the AJRCCM paper issue. PMID: 17023733}, NUMBER = {1}, PAGES = {22--31}, TITLE = {In Vivo Imaging of the Bronchial Wall Microstructure Using Fibered Confocal Fluorescence Microscopy}, VOLUME = {175}, YEAR = {2007}, OPTABSTRACT = {}, DOI = {10.1164/rccm.200605-684OC}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://ajrccm.atsjournals.org/cgi/reprint/175/1/22.pdf}, URL-PUBLISHER = {http://ajrccm.atsjournals.org/cgi/content/abstract/175/1/22}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inserm-00476448/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{yelnik:neuroimage:2007, AUTHOR = {Jérôme Yelnik and Eric Bardinet and Didier Dormont and Grégoire Malandain and Sébastien Ourselin and Dominique Tandé and Carine Karachi and Nicholas Ayache and Philippe Cornu and Yves Agid}, JOURNAL = {NeuroImage}, MONTH = {January}, OPTNOTE = {}, NUMBER = {2}, PAGES = {618-38}, TITLE = {A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data}, VOLUME = {34}, YEAR = {2007}, ABSTRACT = {This paper describes the construction of an atlas of the human basal ganglia. The successive steps of the construction were as follows. First a postmortem specimen was subjected to a MRI acquisition prior to extraction of the brain from the skull. The brain was then cryosectioned (70 mum thickness). One section out of ten (80 sections) was Nissl-stained with cresyl violet, another series of 80 sections was immunostained for the calcium binding protein calbindin. Contours of basal ganglia nuclei including their calbindin-stained functional subdivisions, fiber bundles and ventricles (n=80 structures) were traced from histological sections and digitized. A novelty of this atlas is the MRI acquisition, which represents the core data element of the study. MRI was used for the coregistration of the atlas data and permitted, through multimodal (Nissl, calbindin, images of cryosectioning, T1 and T2 MRI) and 3D optimization, the production of anatomically and geometrically consistent 3D surfaces, which can be sliced through any desired orientation. The atlas MRI is also used for its deformation to provide accurate conformation to the MRI of living patients, thus adding information at the histological level to the patient's MRI volume. This latter aspect will be presented in a forthcoming paper.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Bardinet/bardinet-ni-2007.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616029}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{malandain:geometry:2007, OPTADDRESS = {}, AUTHOR = {Grégoire Malandain}, BOOKTITLE = {Géométrie discrète et images numériques}, OPTCHAPTER = {}, OPTEDITION = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {371--379}, PUBLISHER = {Hermès}, SERIES = {Traités IC2}, TITLE = {Applications de la géométrie discrète en imagerie médicale}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2007}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Arsigny:MRM:06, AUTHOR = {Vincent Arsigny and Pierre Fillard and Xavier Pennec and Nicholas Ayache}, JOURNAL = {Magnetic Resonance in Medicine}, MONTH = {August}, OPTNOTE = {}, NUMBER = {2}, PAGES = {411-421}, TITLE = {Log-Euclidean Metrics for Fast and Simple Calculus on Diffusion Tensors}, VOLUME = {56}, YEAR = {2006}, OPTABSTRACT = {}, DOI = {10.1002/mrm.20965}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {DT-MRI, Tensors, Riemannian geometry, Lie groups, interpolation, Log-Euclidean metrics}, URL = {https://www-sop.inria.fr/asclepios/Publications/Arsigny/arsigny_mrm_2006.pdf}, OPTURL-PUBLISHER = {}, PMID = {16788917}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00502678/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bensa:rn:2006, AUTHOR = {C Bensa and C Bertogliati and S Chanalet and G Malandain and P Bedoucha and C Lebrun}, JOURNAL = {Revue Neurologique}, MONTH = {December}, NOTE = {[In French]}, NUMBER = {12}, PAGES = {1221-31}, TITLE = {Early detection of cognitive impairment in relapsing-remitting multiple sclerosis: functional-anatomical correlations and longitudinal follow-up}, VOLUME = {162}, YEAR = {2006}, ABSTRACT = {Introduction. Cognitive impairment is frequent in relapsing remitting Multiple Sclerosis and is often diagnosed after disruption of occupational and social relations. METHODS: We studied at baseline a homogeneous population of 32 RRMS patients, diagnosed for less than 5 years, with spontaneous memory complaints, and 20 controls. Sixteen patients were followed for 2 years, combining physical examination, neuropsychological tests, and brain MRI. Neuropsychological tests used evaluated memory capacities, attentional capacities, executive functions, language, and visuo-constructive praxis. Lesion load on brain MRI was measured with semi-automatic segmentation procedures and manual control. RESULTS: Eighty percent of patients presented cognitive impairment, and this proportion was higher than that found in the literature. These disorders were more marked for verbal episodic memory, attention, and executive functions. Patients with brain MRI that initially fulfilled the Barkhof criteria and those with callous lesions had more memory disorders. No link between global T1 and T2 lesion loads and neuropsychological scores was found. A statistical link between posterior fossa lesions and attentional disorders was shown. In the longitudinal follow-up, patients had better performances in memory and attentional domains, and a lower number of cognitive domains with dysfunction for each patient. This improvement on neuropsychological tests, whereas EDSS levels were stable, underlined a possible test-retest effect. CONCLUSION: During the initial phase of the disease, most of the relapsing remitting patients present a mild cognitive impairment. Early detection, therapeutic propositions, and recognition of disorders are necessary.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615002}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{blondel:tmi:2006, AUTHOR = {Christophe Blondel and Grégoire Malandain and Régis Vaillant and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {May}, OPTNOTE = {}, NUMBER = {5}, PAGES = {653--663}, TITLE = {Reconstruction of Coronary Arteries from a Single Rotational X-Ray Projection Sequence}, VOLUME = {25}, YEAR = {2006}, ABSTRACT = {Cardiovascular diseases remain the primary cause of death in developed countries. In most cases, exploration of possibly underlying coronary artery pathologies is performed using X-ray coronary angiography. Current clinical routine in coronary angiography is directly conducted in 2-D projection images from several static viewing angles. However, for diagnosis and treatment purposes, coronary artery reconstruction is highly suitable. The purpose of this study is to provide physicians with a 3-D model of coronary arteries, e.g. for absolute three-dimensional measures for lesion assessment, instead of direct projective measures deduced from the images, which are highly dependent on the viewing angle. In this article, we propose a novel method to reconstruct coronary arteries from one single rotational X-ray projection sequence. As a side result, we also obtain an estimation of the coronary artery motion. Our method consists of 3 main consecutive steps: (1) 3-D reconstruction of coronary artery centerlines, including respiratory motion compensation, (2) coronary artery 4-D motion computation, and (3) 3-D tomographic reconstruction of coronary arteries, involving compensation for respiratory and cardiac motions. We present some experiments on clinical datasets, and the feasibility of a true 3-D Quantitative Coronary Analysis is demonstrated.}, DOI = {10.1109/TMI.2006.873224}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Angiocardiography, Coronarography, Image Motion Analysis, Image Reconstruction, Tomography}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/blondel-tmi-2006.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00614993}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cassot:microcirculation:2006, AUTHOR = {Francis Cassot and Frederic Lauwers and Céline Fouard and Steffen Prohaska and Valerie Lauwers-Cances}, JOURNAL = {Microcirculation}, MONTH = {January}, OPTNOTE = {}, NUMBER = {1}, PAGES = {1-18}, TITLE = {A novel three-dimensional computer-assisted method for a quantitative study of microvascular networks of the human cerebral cortex}, VOLUME = {13}, YEAR = {2006}, ABSTRACT = {OBJECTIVE: Detailed information on microvascular network anatomy is a requirement for understanding several aspects of microcirculation, including oxygen transport, distributions of pressure, and wall shear stress in microvessels, regulation of blood flow, and interpretation of hemodynamically based functional imaging methods, but very few quantitative data on the human brain microcirculation are available. The main objective of this study is to propose a new method to analyze this microcirculation. METHODS: From thick sections of india ink-injected human brain, using confocal laser microscopy, the authors developed algorithms adapted to very large data sets to automatically extract and analyze center lines together with diameters of thousands of brain microvessels within a large cortex area. RESULTS: Direct comparison between the original data and the processed vascular skeletons demonstrated the high reliability of this method and its capability to manage a large amount of data, from which morphometry and topology of the cerebral microcirculation could be derived. CONCLUSIONS: Among the many parameters that can be analyzed by this method, the capillary size, the frequency distributions of diameters and lengths, the fractal nature of these networks, and the depth-related density of vessels are all vital features for an adequate model of cerebral microcirculation.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/hal-00308888/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{clatz:neurologies:06, AUTHOR = {Olivier Clatz and Emmanuel Mandonnet and Stéphane Chanalet and Christine Lebrun and Ender Konukoglu and Hervé Delingette and Nicholas Ayache and Pierre-Yves Bondiau}, JOURNAL = {Neurologies}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {93}, PAGES = {665-667}, TITLE = {Modèles Biomathématiques de Croissance Des Gliomes : Recherche en Informatique et Perspectives en Neuro-oncologie}, VOLUME = {9}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Clatz/clatz_neurologies.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00614999}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{colliot:2006:neuroimage, AUTHOR = {O. Colliot and T. Mansi and N. Bernasconi and V. Naessens and D. Klironomos and A. Bernasconi}, JOURNAL = {NeuroImage}, MONTH = {October}, OPTNOTE = {}, NUMBER = {4}, PAGES = {1621-1630}, TITLE = {Segmentation of focal cortical dysplasia lesions on MRI using level set evolution}, VOLUME = {32}, YEAR = {2006}, ABSTRACT = {Focal cortical dysplasia (FCD) is the most frequent malformation of cortical development in patients with medically intractable epilepsy. On MRI, FCD lesions are not easily differentiable from the normal cortex and defining their spatial extent is challenging. In this paper, we introduce a method to segment FCD lesions on T1-weighted MRI. It relies on two successive three-dimensional deformable models, whose evolutions are based on the level set framework. The first deformable model is driven by probability maps obtained from three MRI features: cortical thickness, relative intensity and gradient. These features correspond to the visual characteristics of FCD and allow discriminating lesions and normal tissues. In a second stage, the previous result is expanded towards the underlying and overlying cortical boundaries, throughout the whole cortical section. The method was quantitatively evaluated by comparison with manually traced labels in 18 patients with FCD. The automated segmentations achieved a strong agreement with the manuals labels, demonstrating the applicability of the method to assist the delineation of FCD lesions on MRI. This new approach may become a useful tool for the presurgical evaluation of patients with intractable epilepsy related to cortical dysplasia.}, DOI = {10.1016/j.neuroimage.2006.04.225}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Tommaso.Mansi/colliot06.pdf}, URL-PUBLISHER = {http://www.sciencedirect.com/science/article/B6WNP-4KJDWX2-1/2/5e566226c5ecf099e5aed67c4cdb7c16}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00614998}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Delingette:PLS:06, AUTHOR = {Hervé Delingette and Nicholas Ayache}, JOURNAL = {Pour la science}, MONTH = {July}, OPTNOTE = {}, NUMBER = {52}, PAGES = {106-109}, TITLE = {La simulation de Chirurgie Hépatique}, VOLUME = {52}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Simulation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/Simulation-Pour-La-Science.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Delingette:IEEEProc:06, AUTHOR = {Hervé Delingette and Xavier Pennec and Luc Soler and Jacques Marescaux and Nicholas Ayache}, JOURNAL = {Proceedings of the IEEE}, MONTH = {September}, OPTNOTE = {}, NUMBER = {9}, PAGES = {1678- 1688}, TITLE = {Computational Models for Image Guided, Robot-Assisted and Simulated Medical Interventions}, VOLUME = {94}, YEAR = {2006}, OPTABSTRACT = {}, DOI = {10.1109/JPROC.2006.880718}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/IEEE-proceedings-Robotics.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615001}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Ducreux:CancerRadiotherapy:06, AUTHOR = {Denis Ducreux and Frédéric Dhermain and Pierre Fillard}, JOURNAL = {Cancer radiothérapie}, MONTH = {November}, NOTE = {[In French]}, NUMBER = {6-7}, PAGES = {330-3}, TITLE = {[Functional MRI in brain tumours]}, VOLUME = {10}, YEAR = {2006}, ABSTRACT = {Functional MRI is a technique of imaging which is developing fast as it allows non-aggressive evaluation of brain functions. Diffusion, perfusion and activation are each used to study brain responsiveness to a given task. As a pretherapeutic routine investigation, in brain tumours, it can be helpful as an additional tool to morphological MRI in evaluating the prognosis of patients.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Brain, anatomy & histology, Brain Mapping, Brain Neoplasms, pathology, Humans, Magnetic Resonance Imaging, methods, Prognosis}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00502605}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Ducreux:AJNR:06, AUTHOR = {Denis Ducreux and Jean-Francois Lepeintre and Pierre Fillard and C. Loureiro and Marc Tadié and Pierre Lasjaunias}, JOURNAL = {AJNR. American journal of neuroradiology}, MONTH = {January}, OPTNOTE = {}, NUMBER = {1}, PAGES = {214-6}, TITLE = {MR diffusion tensor imaging and fiber tracking in 5 spinal cord astrocytomas}, VOLUME = {27}, YEAR = {2006}, ABSTRACT = {Spinal cord astrocytomas are rare neoplasms that can result in alteration of the spinal cord structural integrity, which can be assessed by using diffusion tensor imaging methods. Our objective was to visualize the deformation of the posterior spinal cord lemniscal and corticospinal tracts in 5 patients with low-grade astrocytomas compared with 10 healthy volunteers by using 3D fiber-tracking reconstructions.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Adult, Astrocytoma, diagnosis, Diffusion Magnetic Resonance Imaging, Female, Humans, Image Processing Computer-Assisted, Imaging Three-Dimensional, Male, Nerve Fibers, pathology, Spinal Cord, pathology, Spinal Cord Neoplasms, diagnosis}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00502663}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{fouard:tmi:2006, AUTHOR = {Céline Fouard and Grégoire Malandain and Steffen Prohaska and Malte Westerhoff}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {10}, PAGES = {1319-1328}, TITLE = {Blockwise Processing Applied to Brain Microvascular Network Study}, VOLUME = {25}, YEAR = {2006}, ABSTRACT = {The study of cerebral microvascular networks requires high-resolution images. However, to obtain statistically relevant results, a large area of the brain (several square millimeters) must be analyzed. This leads us to consider huge images, too large to be loaded and processed at once in the memory of a standard computer. To consider a large area, a compact representation of the vessels is required. The medial axis is the preferred tool for this application. To extract it, a dedicated skeletonization algorithm is proposed. Numerous approaches already exist which focus on computational efficiency. However, they all implicitly assume that the image can be completely processed in the computer memory, which is not realistic with the large images considered here. We present in this paper a skeletonization algorithm that processes data locally (in subimages) while preserving global properties (i.e., homotopy). We then show some results obtained on a mosaic of three-dimensional images acquired by confocal microscopy.}, DOI = {10.1109/TMI.2006.880670}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/fouard-tmi-2006.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/hal-00308887/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Liberatore:JNeuroradiology:06, AUTHOR = {M. Liberatore and C. Denier and Pierre Fillard and M.C. Petit-Lacour and F. Benoudiba and Pierre Lasjaunias and Denis Ducreux}, JOURNAL = {J Neuroradiol}, MONTH = {June}, NOTE = {[In French]}, NUMBER = {3}, PAGES = {189-193}, TITLE = {[Diffusion tensor imaging and tractography of central pontine myelinolysis]}, VOLUME = {33}, YEAR = {2006}, ABSTRACT = {OBJECTIVES: To illustrate the value of diffusion tensor imaging and tractography in the diagnosis and follow-up of central pontine myelinolysis. CASE REPORT: We report a case of central pontine myelinolysis in a 29 year old woman, also anorexic, studied using MR Diffusion Tensor Imaging (DTI) and Fibre Tracking (FT) focused on the pons, and compared with the studies of 5 normal volunteers. Tractography showed a swollen aspect of the right corticospinal fiber tract correlating with mild left lower extremity deficit at clinical evaluation. The pontine fibers were posteriorly displaced but intact. The sensory tracts were also intact. Apparent Diffusion Coefficient values were increased and Fractional Anisotropy was decreased in the lesions. Follow up imaging showed persistent abnormal ADC and FA values in the pons although the left cortico-spinal tract returned to normal, consistent with the clinical outcome. CONCLUSION: Diffusion Tensor Imaging MR and Fiber tractography are a new method to analyse white matter tracts. It can be used to prospectively evaluate the location of white matter tract lesions at the acute phase of central pontine myelinolysis and follow up.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Adult, Anorexia, complications, Diffusion Magnetic Resonance Imaging, Female, Humans, Myelinolysis Central Pontine, diagnosis, Pyramidal Tracts, pathology}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00502681}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Linguraru:TMI:2006, AUTHOR = {M.G. Linguraru and N. Ayache and E. Bardinet and M.A. González Ballester and D. Galanaud and S. Haïk and B.A. Faucheux and J.J. Hauw and P. Cozzone and D. Dormont and J.P. Brandel}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {8}, PAGES = {1052-1067}, TITLE = {Differentiation of sCJD and vCJD Forms by Automated Analysis of Basal Ganglia Intensity Distribution in Multisequence MRI of the Brain - Definition and Evaluation of New MRI-based Ratios}, VOLUME = {25}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Linguraru/Linguraru_TMI_2006.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/hal-00092290/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Linguraru:MedIA:2006, AUTHOR = {M.G. Linguraru and K. Marias and R. English and J.M. Brady}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {6}, OPTPAGES = {}, PUBLISHER = {Elsevier}, TITLE = {A Biologically Inspired Algorithm for Microcalcification Cluster Detection}, VOLUME = {10}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Linguraru/Linguraru_MEDIA_2006.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{moreau:ieeetbme06, AUTHOR = {Valérie Moreau-Villéger and Hervé Delingette and Maxime Sermesant and Hiroshi Ashikaga and Elliot McVeigh and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Bio-Medical Engineering}, MONTH = {August}, OPTNOTE = {}, NUMBER = {8}, PAGES = {1457-1466}, TITLE = {Building Maps of Local Apparent Conductivity of the Epicardium with a 2D Electrophysiological Model of the Heart}, VOLUME = {53}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Moreau/moreauIEEETBME05.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00614992}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pennec:JMIV:06, AUTHOR = {Xavier Pennec}, JOURNAL = {Journal of Mathematical Imaging and Vision}, MONTH = {July}, NOTE = {A preliminary appeared as INRIA RR-5093, January 2004.}, NUMBER = {1}, PAGES = {127-154}, TITLE = {Intrinsic Statistics on Riemannian Manifolds: Basic Tools for Geometric Measurements}, VOLUME = {25}, YEAR = {2006}, OPTABSTRACT = {}, DOI = {10.1007/s10851-006-6228-4}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Fréchet means, Statistics, Lie groups, Riemannian geometry}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.JMIV06.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00614994}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pennec:IJCV:06, AUTHOR = {Xavier Pennec and Pierre Fillard and Nicholas Ayache}, JOURNAL = {International Journal of Computer Vision}, MONTH = {January}, NOTE = {A preliminary version appeared as INRIA Research Report 5255, July 2004.}, NUMBER = {1}, PAGES = {41--66}, TITLE = {A Riemannian Framework for Tensor Computing}, VOLUME = {66}, YEAR = {2006}, ABSTRACT = { Tensors are nowadays a common source of geometric information. In this paper, we propose to endow the tensor space with an affine-invariant Riemannian metric. We demonstrate that it leads to strong theoretical properties: the cone of positive definite symmetric matrices is replaced by a regular and complete manifold without boundaries (null eigenvalues are at the infinity), the geodesic between two tensors and the mean of a set of tensors are uniquely defined, etc. We have previously shown that the Riemannian metric provides a powerful framework for generalizing statistics to manifolds. In this paper, we show that it is also possible to generalize to tensor fields many important geometric data processing algorithms such as interpolation, filtering, diffusion and restoration of missing data. For instance, most interpolation and Gaussian filtering schemes can be tackled efficiently through a weighted mean computation. Linear and anisotropic diffusion schemes can be adapted to our Riemannian framework, through partial differential evolution equations, provided that the metric of the tensor space is taken into account. For that purpose, we provide intrinsic numerical schemes to compute the gradient and Laplace-Beltrami operators. Finally, to enforce the fidelity to the data (either sparsely distributed tensors or complete tensors fields) we propose least-squares criteria based on our invariant Riemannian distance which are particularly simple and efficient to solve.}, DOI = {10.1007/s11263-005-3222-z}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Tensors, regularization, PDE, geometry, Riemannian geometry}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.IJCV05.pdf}, URL-PUBLISHER = {http://springerlink.metapress.com/openurl.asp?genre=article&issn=0920-5691&volume=66&issue=1&spage=41}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00614990}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{pitiot:media:2006, AUTHOR = {Alain Pitiot and Eric Bardinet and Paul M. Thompson and Grégoire Malandain}, JOURNAL = {Medical Image Analysis}, MONTH = {June}, OPTNOTE = {}, NUMBER = {3}, PAGES = {465--483}, TITLE = {Piecewise Affine Registration of Biological Images for Volume Reconstruction}, VOLUME = {10}, YEAR = {2006}, ABSTRACT = {This manuscript tackles the reconstruction of 3D volumes via mono-modal registration of series of 2D biological images (histological sections, autoradiographs, cryosections, etc.). The process of acquiring these images typically induces composite transformations that we model as a number of rigid or affine local transformations embedded in an elastic one. We propose a registration approach closely derived from this model. Given a pair of input images, we first compute a dense similarity field between them with a block matching algorithm. We use as a similarity measure an extension of the classical correlation coefficient that improves the consistency of the field. A hierarchical clustering algorithm then automatically partitions the field into a number of classes from which we extract independent pairs of sub-images. Our clustering algorithm relies on the Earth mover's distribution metric and is additionally guided by robust least-square estimation of the transformations associated with each cluster. Finally, the pairs of sub-images are, independently, affinely registered and a hybrid affine/non-linear interpolation scheme is used to compose the output registered image. We investigate the behavior of our approach on several batches of histological data and discuss its sensitivity to parameters and noise.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, clustering, reconstruction, histology, MRI}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/MedIA-WBIR-pitiot-etal.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{renoux:aajn:2006, AUTHOR = {J Renoux and D Facon and P Fillard and I Huynh and P Lasjaunias and D Ducreux}, JOURNAL = {AJNR. American journal of neuroradiology}, MONTH = {October}, OPTNOTE = {}, NUMBER = {9}, PAGES = {1947-51}, TITLE = {MR diffusion tensor imaging and fiber tracking in inflammatory diseases of the spinal cord}, VOLUME = {27}, YEAR = {2006}, ABSTRACT = {PURPOSE: Our aim was to study the fractional anisotropy (FA) variations and the fiber tracking (FT) patterns observed in patients with myelitis. MATERIAL AND METHODS: Fifteen patients with symptomatic myelitis and 11 healthy subjects were prospectively selected. We performed T2-weighted and diffusion tensor imaging on a 1.5T MR scanner. FA and apparent diffusion coefficient maps were computed in both healthy subjects and patients. In each patient, we performed FT to study pathologic aspects on this imaging method. FA data were analyzed by using z-scores. RESULTS: For the healthy subjects, averaged FA values ranged from 0.745 to 0.751. All abnormal areas seen on T2-weighted imaging had a significantly decreased FA value. In 9 patients (60%), FA maps showed decreased FA areas, whereas T2-weighted imaging findings were normal. These areas matched the neurologic deficit in 33%. Eighty percent of patients had multiple decreased FA areas. Five patients (33%) had increased FA values in normal T2-weighted areas. CONCLUSION: We observed specific FA and FT pattern variations in patients with myelitis.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Adult, Anisotropy, Diagnosis Differential, Diffusion Magnetic Resonance Imaging, Female, Humans, Image Enhancement, Image Processing Computer-Assisted, Male, Middle Aged, Multiple Sclerosis, diagnosis, Myelitis, diagnosis, Myelitis Transverse, diagnosis, Nerve Fibers, pathology, Neurologic Examination, Prospective Studies, Reference Values, Sarcoidosis, diagnosis, Spinal Cord, pathology}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00502684}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Scarella:CRAS:06, AUTHOR = {Gilles Scarella and Olivier Clatz and Stéphane Lanteri and Grégory Beaume and Steve Oudot and Jean-Philippe Pons and Serge Piperno and Patrick Joly and Joe Wiart}, JOURNAL = {Comptes Rendus de l'Académie des Sciences - Physics}, MONTH = {June}, OPTNOTE = {}, NUMBER = {5}, PAGES = {501-508}, TITLE = {Realistic numerical modelling of human head tissue exposure to electromagnetic waves from cellular phones}, VOLUME = {7}, YEAR = {2006}, ABSTRACT = {The ever-rising diffusion of cellular phones has brought about an increased concern for the possible consequences of electromagnetic radiation on human health. Possible thermal effects have been investigated, via experimentation or simulation, by several research projects in the last decade. Concerning numerical modeling, the power absorption in a user's head is generally computed using discretized models built from clinical MRI data. The vast majority of such numerical studies have been conducted using Finite Differences Time Domain methods, although strong limitations of their accuracy are due to heterogeneity, poor definition of the detailed structures of head tissues (staircasing effects), etc. In order to propose numerical modeling using Finite Element or Discontinuous Galerkin Time Domain methods, reliable automated tools for the unstructured discretization of human heads are also needed. Results presented in this article aim at filling the gap between human head MRI images and the accurate numerical modeling of wave propagation in biological tissues and its thermal effects.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://cermics.enpc.fr/~piper/perso/papers/2005-CRAS-HEADEXP.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal-enpc.archives-ouvertes.fr/hal-00607719}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Sermesant:TMI:06, AUTHOR = {Maxime Sermesant and Hervé Delingette and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {5}, PAGES = {612--625}, TITLE = {An Electromechanical Model of the Heart for Image Analysis and Simulation}, VOLUME = {25}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/TMI2006Sermesant.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00614991}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Sermesant:MEDIA:06, AUTHOR = {Maxime Sermesant and Philippe Moireau and Oscar Camara and Jacques Sainte-Marie and Rado Andriantsimiavona and Robert Cimrman and Derek L. Hill and Dominique Chapelle and Reza Razavi}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {642--656}, TITLE = {Cardiac function estimation from MRI using a heart model and data assimilation: Advances and difficulties}, VOLUME = {10}, YEAR = {2006}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/MEDIA2006Sermesant.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00614997}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{simonetti:jnm:2006, AUTHOR = {Arjan W Simonetti and Vedat A Elezi and Regine Farion and Gregoire Malandain and Christoph Segebarth and Chantal Remy and Emmanuel L Barbier}, JOURNAL = {Journal of Neuroscience Methods}, MONTH = {December}, OPTNOTE = {}, NUMBER = {2}, PAGES = {242-50}, TITLE = {A low temperature embedding and section registration strategy for 3D image reconstruction of the rat brain from autoradiographic sections}, VOLUME = {158}, YEAR = {2006}, ABSTRACT = {In studies on animal models of human brain pathologies, three-dimensional reconstruction from histological sections is particularly useful when assessing the morphologic, functional and biochemical changes induced by pathology. It allows assessing lesion heterogeneity in planes different from the cutting plane and allows correlating the histology with images obtained in vivo, such as by means of magnetic resonance imaging. To create a 3D volume from autoradiographic sections with minimal distortion, both cryosectioning as well as section registration need to be optimal. This paper describes a strategy whereby four external fiducial markers are positioned outside the rat brain with the use of a low temperature brain embedding procedure. The fiducial markers proposed here can be rapidly added to any frozen tissue block with no impact on the subsequent histological operations. Since embedding is performed at a low temperature, no tissue degradation occurs due to sample heating. The markers enable robust and almost error free registration, even in the presence of missing sections and poor image quality. Furthermore, the markers may be used to partially correct for global distortions.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/simonetti-jnm-2006.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inserm-00388981/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Vercauteren:Media:06, AUTHOR = {Tom Vercauteren and Aymeric Perchant and Grégoire Malandain and Xavier Pennec and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {October}, NOTE = {Annual Medical Image Analysis (MedIA) Best Paper Award 2006. PMID: 16887375}, NUMBER = {5}, PAGES = {673--692}, TITLE = {Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy}, VOLUME = {10}, YEAR = {2006}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2006.06.006}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Tom.Vercauteren/RobustMosaicingMotionDistoTissueDefInVivoFCM-MedIA06-Vercauteren.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00163961}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{arsigny:media:05, AUTHOR = {Vincent Arsigny and Xavier Pennec and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {December}, OPTNOTE = {}, NUMBER = {6}, PAGES = {507-523}, TITLE = {Polyrigid and Polyaffine Transformations: a Novel Geometrical Tool to Deal with Non-Rigid Deformations - Application to the registration of histological slices}, VOLUME = {9}, YEAR = {2005}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2005.04.001}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Non-rigid registration, Histological slices, Polyaffine transformations, Ordinary differential equations}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Arsigny_Media_ITK.pdf}, URL-PUBLISHER = {http://authors.elsevier.com/sd/article/S1361841505000289}, PMID = {15948656}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615665}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{boissonnat:media:2005, AUTHOR = {J.-D. Boissonnat and R. Chaine and P. Frey and G. Malandain and S. Salmon and E. Saltel and M. Thiriet}, JOURNAL = {Medical Image Analysis}, MONTH = {April}, OPTNOTE = {}, NUMBER = {2}, PAGES = {133-143}, TITLE = {From arteriographies to computational flow in saccular aneurisms: the INRIA experience}, VOLUME = {9}, YEAR = {2005}, ABSTRACT = {Saccular aneurisms illustrate usefulness and possible techniques of image-based modeling of flow in diseased vessels. Aneurism flow is investigated in order to estimate the rupture risk, assuming that the pressure is the major factor and that high-pressure zones are correlated to within-wall strong-stress concentrations. Computational flow is also aimed at providing additional arguments for the treatment strategy. Angiographies of aneurismal vessels of large and medium size are processed to provide three-dimensional reconstruction of the vessel region of interest. Different reconstruction techniques are used for a side and a terminal aneurisms. Reconstruction techniques may lead to different geometries especially with poor input data. The associated facetisation is improved to get a computation-adapted surface triangulation, after a treatment of vessel ends and mesh adaptation. Once the volumic mesh is obtained, the pulsatile flow of an incompressible Newtonian blood is computed using in vivo non-invasive flowmetry and the finite element method. High pressure zones are observed in the aneurism cavity. The pressure magnitude in the aneurism, the location and the size of high pressure zones depend mainly on the aneurism implantation on the vessel wall and its orientation with respect to the blood flux in the upstream vessel. The stronger the blood impacts on the aneurismal wall the higher the pressure. The state of the aneurism neck, where a high-pressure zone can occur, and the location of the aneurism, with an easy access or not, give arguments for the choice between coiling and surgical clipping. Mesh size and 3D reconstruction procedure affect the numerical results. Helpful qualitative data are provided rather than accurate quantitative results in the context of multimodeling.}, DOI = {10.1016/j.media.2004.11.004}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {3D reconstruction, Aneurism, Finite element method, Mesh adaptation, Pulsatile flow}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/boissonnat-media-2005.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/hal-00017614/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bondiau:ijrobp:2005, AUTHOR = {Pierre-Yves Bondiau and Gregoire Malandain and Stephane Chanalet and Pierre-Yves Marcy and Jean-Louis Habrand and Francois Fauchon and Philippe Paquis and Adel Courdi and Olivier Commowick and Isabelle Rutten and Nicholas Ayache}, JOURNAL = {Int J Radiat Oncol Biol Phys}, MONTH = {January}, OPTNOTE = {}, NUMBER = {1}, PAGES = {289-98}, TITLE = {Atlas-based automatic segmentation of MR images: validation study on the brainstem in radiotherapy context}, VOLUME = {61}, YEAR = {2005}, ABSTRACT = {PURPOSE: Brain tumor radiotherapy requires the volume measurements and the localization of several individual brain structures. Any tool that can assist the physician to perform the delineation would then be of great help. Among segmentation methods, those that are atlas-based are appealing because they are able to segment several structures simultaneously, while preserving the anatomy topology. This study aims to evaluate such a method in a clinical context. METHODS AND MATERIALS: The brain atlas is made of two three-dimensional (3D) volumes: the first is an artificial 3D magnetic resonance imaging (MRI); the second consists of the segmented structures in this artificial MRI. The elastic registration of the artificial 3D MRI against a patient 3D MRI dataset yields an elastic transformation that can be applied to the labeled image. The elastic transformation is obtained by minimizing the sum of the square differences of the image intensities and derived from the optical flow principle. This automatic delineation (AD) enables the mapping of the segmented structures onto the patient MRI. Parameters of the AD have been optimized on a set of 20 patients. Results are obtained on a series of 6 patients' MRI. A comprehensive validation of the AD has been conducted on performance of atlas-based segmentation in a clinical context with volume, position, sensitivity, and specificity that are compared by a panel of seven experimented physicians for the brain tumor treatments. RESULTS: Expert interobserver volume variability ranged from 16.70 cm(3) to 41.26 cm(3). For patients, the ratio of minimal to maximal volume ranged from 48% to 70%. Median volume varied from 19.47 cm(3) to 27.66 cm(3) and volume of the brainstem calculated by AD varied from 17.75 cm(3) to 24.54 cm(3). Medians of experts ranged, respectively, for sensitivity and specificity, from 0.75 to 0.98 and from 0.85 to 0.99. Median of AD were, respectively, 0.77 and 0.97. Mean of experts ranged, respectively, from 0.78 to 0.97 and from 0.86 to 0.99. Mean of AD were, respectively, 0.76 and 0.97. CONCLUSIONS: Results demonstrate that the method is repeatable, provides a good trade-off between accuracy and robustness, and leads to reproducible segmentation and labeling. These results can be improved by enriching the atlas with the rough information of tumor or by using different laws of deformation for the different structures. Qualitative results also suggest that this method can be used for automatic segmentation of other organs such as neck, thorax, abdomen, pelvis, and limbs.}, DOI = {10.1016/j.ijrobp.2004.08.055}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Algorithms, Anatomical Atlas, methods, Brain Neoplasms, pathology, Brain Stem, anatomy & histology, Humans, Image Interpretation Computer-Assisted, methods, Magnetic Resonance Imaging, methods, Medical Illustration, Observer Variation, Reproducibility of Results, Sensitivity and Specificity}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/bondiau-ijrobp-2005.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615664}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{clatz_2:TMI:2005, AUTHOR = {Olivier Clatz and Hervé Delingette and Ion-Florin Talos and Alexandra J. Golby and Ron Kikinis and Ferenc Jolesz and Nicholas Ayache and Simon Warfield}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {Nov.}, OPTNOTE = {}, NUMBER = {11}, PAGES = {1417-1427}, TITLE = {Robust Non-Rigid Registration to Capture Brain Shift from Intra-Operative MRI}, VOLUME = {24}, YEAR = {2005}, ABSTRACT = {We present a new algorithm to register 3D pre-operative Magnetic Resonance (MR) images to intra-operative MR images of the brain which have undergone brain shift. This algorithm relies on a robust estimation of the deformation from a sparse noisy set of measured displacements. We propose a new framework to co mpute the displacement field in an iterative process, allowing the solution to gradually move from an approximation formulation (minimizing the sum of a re gularization term and a data error term) to an interpolation formulation (least square minimization of the data error term). An outlier rejection step is i ntroduced in this gradual registration process using a weighted least trimmed squares approach, aiming at improving the robustness of the algorithm. We use a patient-specific model discretized with the finite element method (FEM) in order to ensure a realistic mechanical behavior of the brain tissue. To meet the clinical time constraint, we parallelized the slowest step of the algorithm so that we can perform a full 3D image registration in 35 seconds ( including the image update time) on a heterogeneous cluster of 15 PCs. The algorithm has been tested on six cases of brain tumor resection, presenting a brain shift of up to 14 mm. The results show a good ability to recover la rge displacements, and a limited decrease of accuracy near the tumor resection cavity.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Non-rigid registration, intra-operative magnetic resonance imaging, finite element model, brain shift}, URL = {https://www-sop.inria.fr/asclepios/Publications/Clatz/TMI_intraoperative_clatz.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615661}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{clatz_1:TMI:2005, AUTHOR = {Olivier Clatz and Maxime Sermesant and Pierre-Yves Bondiau and Hervé Delingette and Simon K. Warfield and Grégoire Malandain and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {October}, OPTNOTE = {}, NUMBER = {10}, PAGES = {1334-1346}, TITLE = {Realistic Simulation of the 3D Growth of Brain Tumors in MR Images Coupling Diffusion with Mass Effect}, VOLUME = {24}, YEAR = {2005}, ABSTRACT = {We propose a new model to simulate the 3D growth of glioblastomas multiforma (GBMs), the most aggressive glial tumors. The GBM speed of growth depends on the invaded tissue: faster in white than in gray matter, it is stopped by the dura or the ventricles. These different structures are introduced into the model using an atlas matching technique. The atlas includes both the segmentations of anatomical structures and diffusion information in white matter fibers. We use the finite element method (FEM) to simulate the invasion of the GBM in the brain parenchyma and its mechanical interaction with the invaded structures (mass effect). Depending on the considered tissue, the former effect is modeled with a reaction-diffusion or a Gompertz equation, while the latter is based on a linear elastic brain constitutive equation. In addition, we propose a new coupling equation taking into account the mechanical influence of the tumor cells on the invaded tissues. The tumor growth simulation is assessed by comparing the \textit{in-silico} GBM growth with the real growth observed on two magnetic resonance images (MRIs) of a patient acquired with six months difference. Results show the feasibility of this new conceptual approach and justifies its further validation.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Tumor, brain, growth, model, simulation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Clatz/TMI_GBM_clatz.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615662}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Delingette:cacm:2005, AUTHOR = {H. Delingette and N. Ayache}, JOURNAL = {Communications of the ACM}, MONTH = {February}, OPTNOTE = {}, NUMBER = {2}, PAGES = {31--36}, TITLE = {Hepatic Surgery Simulation}, VOLUME = {48}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/cacm-delingette-05.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615659}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Ducreux:Neuroradiology:05, AUTHOR = {D. Ducreux and I. Huynh and P. Fillard and J. Renoux and M.C. Petit-Lacour and K. Marsot-Dupuch and P. Lasjaunias}, JOURNAL = {Neuroradiology}, MONTH = {August}, OPTNOTE = {}, NUMBER = {8}, PAGES = {604-608}, TITLE = {Brain MR Diffusion Tensor Imaging and Fibre Tracking to Differentiate Between Two Diffuse Axonal Injuries}, VOLUME = {47}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00502656/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Facon:AJNR:05, AUTHOR = {D. Facon and A. Ozanne and P. Fillard and J.-F. Lepeintre and C. Tournoux-Facon and D. Ducreux}, JOURNAL = {AJNR. American journal of neuroradiology}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {1587-1594}, TITLE = {MR Diffusion Tensor Imaging and Fiber Tracking in Spinal Cord Compression}, VOLUME = {26}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00502651/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Forest:media:2005, AUTHOR = {C. Forest and H. Delingette and N. Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {April}, OPTNOTE = {}, NUMBER = {2}, PAGES = {113--122}, TITLE = {Removing Tetrahedra from manifold tetrahedralisation : application to real-time surgical simulation}, VOLUME = {9}, YEAR = {2005}, ABSTRACT = {This paper proposes an efficient method for removing tetrahedra from a tetrahedral mesh while keeping its manifold property. We first define precisely the notion of manifold tetrahedral mesh and stress its relevance in the context of real-time surgery simulation. We then provide a method for removing a tetrahedron that complies with the manifold definition. This removal may require in some cases the removal of neighboring tetrahedra. After providing an exhaustive description of the tetrahedron removal algorithm, its efficiency is evaluated for different mesh configurations. This algorithm is currently used in the context of real-time surgery simulation where the action of an ultrasonic lancet can be simulated by the removal of small set of tetrahedra from a tetrahedralisation.}, DOI = {10.1016/j.media.2004.11.003}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Surgical simulation, Topological modifications, Manifold meshes}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/Media-Forest-2005.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615666}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{fouard:ivc:2005, AUTHOR = {Céline Fouard and Grégoire Malandain}, JOURNAL = {Image and Vision Computing}, MONTH = {February}, OPTNOTE = {}, NUMBER = {2}, PAGES = {143--158}, TITLE = {3-D chamfer distances and norms in anisotropic grids}, VOLUME = {23}, YEAR = {2005}, ABSTRACT = {Chamfer distances are widely used in image analysis and many authors have investigated the computation of optimal chamfer mask coefficients. Unfortunately, these methods are not systematized: calculations have to be conducted manually for every mask size or image anisotropy. Since image acquisition (e.g. medical imaging) can lead to discrete anisotropic grids with unpredictable anisotropy value, automated calculation of chamfer mask coefficients becomes mandatory for e cient distance map computations. This article presents an automatic construction for chamfer masks of arbitrary sizes. This allows, first, to derive analytically the relative error with respect to the Euclidean distance, in any 3-D anisotropic lattice, and second, to compute optimal chamfer coefficients. In addition, the resulting chamfer map verifies discrete norm conditions.}, DOI = {10.1016/j.imavis.2004.06.009}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {chamfer distance, anisotropic lattice, Farey triangulation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Fouard/Fouard_Malandain_IVC_2004.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/hal-00308886/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Germain:JCMC:2005, AUTHOR = {C. Germain and V. Breton and P. Clarysse and Y. Gaudeau and T. Glatard and E. Jeannot and Y. Legré and C. Loomis and I. Magnin and J. Montagnat and J.-M. Moureau and A. Osorio and X. Pennec and R. Texier}, JOURNAL = {Journal of Clinical Monitoring and Computing}, MONTH = {October}, OPTNOTE = {}, NUMBER = {4-5}, PAGES = {339--349}, PUBLISHER = {Springer}, TITLE = {Grid-Enabling Medical Image Analysis}, VOLUME = {19}, YEAR = {2005}, OPTABSTRACT = {}, DOI = {10.1007/s10877-005-0679-9}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.springerlink.com/openurl.asp?genre=article&issn=1387-1307&volume=19&issue=4&spage=339}, PMID = {16328948}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00288871/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{malandain:pls:05, AUTHOR = {Grégoire Malandain and Mauricio Reyes}, JOURNAL = {Pour la science}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {132--137}, TITLE = {La tomographie en mouvement}, VOLUME = {338}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.pourlascience.com/index.php?ids=WtziAfYhsmtvomeisOBp&Menu=Pls&Action=3&idn3=4915}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615669}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Montagnat:Media:04, AUTHOR = {J. Montagnat and H. Delingette}, JOURNAL = {Medical Image Analysis}, MONTH = {February}, OPTNOTE = {}, NUMBER = {1}, PAGES = {87--100}, TITLE = {4D Deformable Models with temporal constraints : application to 4D cardiac image segmentation}, VOLUME = {9}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/montagnat-Media04.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/hal-00443361/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Muthurangu:AJP:05, AUTHOR = {V Muthurangu and D Atkinson and M Sermesant and M E Miquel and S Hegde and R Johnson and R Andriantsimiavona and A M Taylor and E Baker and R Tulloh and D Hill and R S Razavi}, JOURNAL = {American journal of physiology. Heart and circulatory physiology}, MONTH = {September}, OPTNOTE = {}, NUMBER = {3}, PAGES = {1301-1306}, TITLE = {Measurement of total pulmonary arterial compliance using invasive pressure monitoring and MR flow quantification during MR-guided cardiac catheterization}, VOLUME = {289}, YEAR = {2005}, ABSTRACT = {Pulmonary hypertensive disease is assessed by quantification of pulmonary vascular resistance. Pulmonary total arterial compliance is also an indicator of pulmonary hypertensive disease. However, because of difficulties in measuring compliance, it is rarely used. We describe a method of measuring pulmonary arterial compliance utilizing magnetic resonance (MR) flow data and invasive pressure measurements. Seventeen patients with suspected pulmonary hypertension or congenital heart disease requiring preoperative assessment underwent MR-guided cardiac catheterization. Invasive manometry was used to measure pulmonary arterial pressure, and phase-contrast MR was used to measure flow at baseline and at 20 ppm nitric oxide (NO). Total arterial compliance was calculated using the pulse pressure method (parameter optimization of the 2-element windkessel model) and the ratio of stroke volume to pulse pressure. There was good agreement between the two estimates of compliance (r = 0.98, P 10% in response to 20 ppm NO. As a population, the increase did not reach statistical significance. There was an inverse relation between compliance and resistance (r = 0.89, P < 0.001) and between compliance and mean pulmonary arterial pressure (r = 0.72, P < 0.001). We have demonstrated the feasibility of quantifying total arterial compliance using an MR method.}, DOI = {10.1152/ajpheart.00957.2004}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://www.hubmed.org/display.cgi?uids=15879483}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615658}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Nicolau:CAVW:05, AUTHOR = {Stéphane Nicolau and Alain Garcia and Xavier Pennec and Luc Soler and Nicholas Ayache}, JOURNAL = {Computer Animation and Virtual World (previously the Journal of Visualization and Computer Animation)}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {1--10}, PUBLISHER = {Wiley}, TITLE = {An augmented reality system to guide radio-frequency tumor ablation}, VOLUME = {16}, YEAR = {2005}, OPTABSTRACT = {}, DOI = {10.1002/cav.52}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Nicolau.CAVW.pdf}, URL-PUBLISHER = {http://www3.interscience.wiley.com/cgi-bin/jtoc/106562739/}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615660}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pennec:PLS:05, AUTHOR = {Xavier Pennec}, JOURNAL = {Pour la science}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {126--131}, TITLE = {Recaler pour mieux soigner}, VOLUME = {338}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/members/Xavier.Pennec/Pennec.PLS05.pdf}, URL-PUBLISHER = {http://www.pourlascience.com/index.php?ids=WtziAfYhsmtvomeisOBp&Menu=Pls&Action=3&idn3=4914}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615670}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Rhode:TMI:05, AUTHOR = {K. Rhode and M. Sermesant and D. Brogan and S. Hegde and J. Hipwell and P. Lambiase and E. Rosenthal and C. Bucknall and S. Qureshi and J. Gill and R. Razavi and D. Hill}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {11}, PAGES = {1428-1440}, TITLE = {A system for real-time XMR guided cardiovascular intervention}, VOLUME = {24}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/TMI2005Rhode.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615663}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Sermesant:MEDIA:05, AUTHOR = {M. Sermesant and K. Rhode and G. Sanchez-Ortiz and O. Camara and R. Andriantsimiavona and S. Hegde and D. Rueckert and P. Lambiase and C. Bucknall and E. Rosenthal and H. Delingette and D. Hill and N. Ayache and R. Razavi}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {5}, PAGES = {467--480}, TITLE = {Simulation of Cardiac Pathologies using an Electromechanical Biventricular Model and XMR Interventional Imaging}, VOLUME = {9}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/SermesantMEDIA2005.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615667}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Stefanescu:MIM:05, AUTHOR = {Radu Stefanescu and Xavier Pennec and Nicholas Ayache}, JOURNAL = {Methods of Information in Medicine}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, OPTPAGES = {}, TITLE = {A Grid Service for the Interactive Use of a Parallel Non-Rigid Registration Algorithm of Medical Images}, VOLUME = {44}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {grid service, registration, non-rigid, parallel}, URL = {https://www-sop.inria.fr/asclepios/Publications/Stefanescu/MIM04.pdf}, URL-PUBLISHER = {http://www.methods-online.com/zs/methods/artikel.asp?path=/zs/methods/2005/2/&nummer=me05020239}, PMID = {15924183}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Pennec:Fusion:05, OPTADDRESS = {}, AUTHOR = {Xavier Pennec and Alexis Roche and Pascal Cathier and Nicholas Ayache}, BOOKTITLE = {Multi-Sensor Image Fusion and Its Applications}, CHAPTER = {4}, OPTEDITION = {}, EDITOR = {R.S. Blum and Zh. Liu}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {107--143}, PUBLISHER = {CRC Press - Taylor and Francis}, SERIES = {Signal Processing and Communications}, TITLE = {Non-Rigid MR/US Registration for Tracking Brain Deformations}, OPTTYPE = {}, VOLUME = {26}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, ultrasound, motion tracking, deformations, magnetic resonance, correlation ratio, robust estimation, multimodal}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.MRUS_Fusion.pdf}, URL-PUBLISHER = {http://www.crcpress.com/shopping_cart/products/product_detail.asp?sku=DK493X}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615672}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{pitiot:SegmentationReview:2005, OPTADDRESS = {}, AUTHOR = {A. Pitiot and H. Delingette and P.M. Thompson}, BOOKTITLE = {Medical Imaging Systems Technology}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Cornelius T. Leondes}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {World Scientific}, OPTSERIES = {}, TITLE = {Automated Image Segmentation: Issues and Applications}, OPTTYPE = {}, VOLUME = {3}, YEAR = {2005}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/leondes-segmentation-2004Aug09.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615671}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{pitiot:neuroimage:04, AUTHOR = {J. Annese and A. Pitiot and I.D. Dinov and A.W. Toga}, JOURNAL = {NeuroImage}, MONTH = {January}, OPTNOTE = {}, NUMBER = {1}, PAGES = {15-26}, TITLE = {A myelo-architectonic method for the structural classification of cortical areas}, VOLUME = {21}, YEAR = {2004}, ABSTRACT = {We describe an automatic and reproducible method to analyze the histological design of the cerebral cortex as applied to brain sections stained to reveal myelinated fibers. The technique provides an evaluation of the distribution of myelination across the width of the cortical mantle in accordance with a model of its curvature and its intrinsic geometry. The profile lines along which the density of staining is measured are generated from the solution of a partial differential equation (PDE) that models the intermediate layers of the cortex. Cortical profiles are classified according to significant components that emerge from wavelet analysis. Intensity profiles belonging to each distinct class are normalized and averaged to produce area-specific templates of cortical myelo-architecture.}, DOI = {10.1016/j.neuroimage.2003.08.024}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Myelo-architecture, Cerebral cortex, Cortical areas}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{blondel:pmb:2004, AUTHOR = {Christophe Blondel and Régis Vaillant and Grégoire Malandain and Nicholas Ayache}, JOURNAL = {Physics in Medicine and Biology}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {11}, PAGES = {2197--2208}, TITLE = {3-D tomographic reconstruction of coronary arteries using a precomputed 4-D motion field}, VOLUME = {49}, YEAR = {2004}, OPTABSTRACT = {}, DOI = {10.1088/0031-9155/49/11/006}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/blondel-pmb-2004.pdf}, URL-PUBLISHER = {http://stacks.iop.org/0031-9155/49/2197}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bondiau:ct:2004, AUTHOR = {P.Y. Bondiau and G. Malandain and S. Chanalet and P.Y. Marcy and C. Foa and N. Ayache}, JOURNAL = {Cancer radiothérapie}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {120--129}, TITLE = {Traitement des images et radiothérapie}, VOLUME = {8}, YEAR = {2004}, ABSTRACT = {La radioth{\'e}rapie est un domaine privil{\'e}gi{\'e} d'application des techniques de traitement des images de par l'utilisation importante de donn{\'e}es issues de l'imagerie. Celles-ci sont de plus en pleine expansion du fait de la progression des performances informatiques. Actuellement, les d{\'e}veloppements r{\'e}cents de la radioth{\'e}rapie (radioth{\'e}rapie de conformation, radioth{\'e}rapie conformationnelle avec modulation d'intensit{\'e}) procurent une place majeure {\`a} ces techniques. En effet, elles contribuent {\`a} r{\'e}pondre aux conditions de pr{\'e}cision exig{\'e}es par la radioth{\'e}rapie moderne et permettent d'envisager d'am{\'e}liorer les traitements. L'objectif de cet article est de pr{\'e}senter les diff{\'e}rentes techniques du traitement d'image utilis{\'e}es aujourd'hui en radioth{\'e}rapie (segmentation et recalage en particulier) au travers de la litt{\'e}rature.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/bondiau-cancer-2004.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Cachier-JMIV-2004, AUTHOR = {P. Cachier and N. Ayache}, JOURNAL = {Journal of Mathematical Imaging and Vision}, MONTH = {May}, OPTNOTE = {}, NUMBER = {3}, PAGES = {251--265}, TITLE = {Isotropic energies, filters and splines for vectorial regularization}, VOLUME = {20}, YEAR = {2004}, OPTABSTRACT = {}, DOI = {10.1023/B:JMIV.0000024042.88755.4f}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {vector field regularization, non-rigid registration, convolution filter, spline}, URL = {https://www-sop.inria.fr/asclepios/Publications/Cachier/JMIV.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Delingette:Centraliens:04, AUTHOR = {H. Delingette}, JOURNAL = {Centraliens}, MONTH = {February}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {17--18}, TITLE = {Réalité Virtuelle et Médecine}, VOLUME = {552}, YEAR = {2004}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Gonzalez:MedIA:04, AUTHOR = {González Ballester, Miguel Angel and Xavier Pennec and Marius George Linguraru and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {September}, OPTNOTE = {}, NUMBER = {3}, PAGES = {361--369}, PUBLISHER = {Elsevier}, TITLE = {Generalized Image Models and Their Application as Statistical Models of Images}, VOLUME = {8}, YEAR = {2004}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2004.06.012}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gonzalez/Gonzalez_MedIA_2004.pdf}, OPTURL-PUBLISHER = {}, PMID = {15450229}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{klein:cbr:04, AUTHOR = {Isabelle Klein and Jessica Dubois and Jean-François Mangin and Ferath Kherif and Guillaume Flandin and Jean-Baptiste Poline and Michel Denis and Stephen M. Kosslyn and Denis LeBihan}, JOURNAL = {Cognitive Brain Research}, MONTH = {December}, OPTNOTE = {}, NUMBER = {1}, PAGES = {26--31}, TITLE = {Retinotopic organization of visual mental images as revealed by functional magnetic resonance imaging}, VOLUME = {22}, YEAR = {2004}, ABSTRACT = {In this study, we used event-related functional magnetic resonance imaging to investigate whether visual mental images retinotopically activate early visual cortex. Six participants were instructed to visualize or view horizontally or vertically oriented flashing bow-tie shaped stimuli. When compared to baseline, imagery globally activated Area V1. When the activation evoked by the stimuli at the different orientations was directly compared, distinct spatial activation patterns were obtained for each orientation in most participants. Not only was the topography of the activation patterns from imagery similar to the topography obtained with a corresponding visual perception task, but it closely matched the individual cortical representation of either the horizontal or the vertical visual field meridians. These findings strongly support that visual imagery and perception share low-level anatomical substrate and functional processes. Binding of spatial features is suggested as one possible mechanism.}, DOI = {10.1016/j.cogbrainres.2004.07.006}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/hal-00349680/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{lebrun:rn:2004, AUTHOR = {C Lebrun and D Rey and S Chanalet and V Bourg and C Bensa and M Chatel and N Ayache and G Malandain}, JOURNAL = {Revue Neurologique}, MONTH = {September}, NOTE = {in French}, NUMBER = {8-9}, PAGES = {805-10}, TITLE = {The contribution of automatic anatomical matching of sequential brain MRI scans in the monitoring of multiple sclerosis lesions}, VOLUME = {160}, YEAR = {2004}, ABSTRACT = {INTRODUCTION: Magnetic resonance imaging (MRI) has transformed management of patients with multiple sclerosis. The exact contribution of brain MRI remains a subject of debate, but it is generally considered to provide a more specific and more sensitive outcome measure for monitoring purposes and for testing new therapies. The choice of MRI techniques, and measurement reproducibility for multiple sclerosis brain lesions are not defined with precision for routine practice. There are many sources of error when comparing successive images which can be overcome to some extent with repositioning and image processing techniques. METHODS: We evaluated the impact of image repositioning on treatment decision-making for twelve relapsing remitting patients. Brain MRIs were performed every three months for a one-year period. Two neurologists interpreted the non-repositioned and repositioned images giving their analysis of changes in the lesions visualized on the T2 sequences and their therapeutic decisions. RESULTS: For the first neurologist, analysis of the non-repositioned images yielded six patients whose lesions had worsened while for the repositioned images there were only three. For the second neurologist, four patients had more lesions with the non-repositioned images and only three with repositioning. The subjective interpretations were the same for the two neurologists when they used repositioned images. CONCLUSIONS: Comparison by two neurologists of non-repositioned and repositioned MRI, with no other image processing, affected the analysis and in certain cases propositions for treatment.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {multiple sclerosis}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/lebrun-rn-2004.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{pitiot:joa:2004, AUTHOR = {A. MacKenzie-Graham and E.F. Lee and I.D. Dinov and M. Bota and D.W. Shattuck and S. Ruffins and H. Yuan and F. Konstantinidis and A. Pitiot and Y. Ding and G. Hu and R.E. Jacobs and A.W. Toga}, JOURNAL = {Journal of Anatomy}, MONTH = {February}, OPTNOTE = {}, NUMBER = {2}, PAGES = {93--102}, TITLE = {A multimodal, multidimensional atlas of the C57BL/6J mouse brain}, VOLUME = {204}, YEAR = {2004}, ABSTRACT = {Strains of mice, through breeding or the disruption of normal genetic pathways, are widely used to model human diseases. Atlases are an invaluable aid in understanding the impact of such manipulations by providing a standard for comparison. We have developed a digital atlas of the adult C57BL/6J mouse brain as a comprehensive framework for storing and accessing the myriad types of information about the mouse brain. Our implementation was constructed using several different imaging techniques: magnetic resonance microscopy, blockface imaging, classical histology and immunohistochemistry. Along with raw and annotated images, it contains database management systems and a set of tools for comparing information from different techniques. The framework allows facile correlation of results from different animals, investigators or laboratories by establishing a canonical representation of the mouse brain and providing the tools for the insertion of independent data into the same space as the atlas. This tool will aid in managing the increasingly complex and voluminous amounts of information about the mammalian brain. It provides a framework that encompasses genetic information in the context of anatomical imaging and holds tremendous promise for producing new insights into the relationship between genotype and phenotype. We describe a suite of tools that enables the independent entry of other types of data, facile retrieval of information and straightforward display of images. Thus, the atlas becomes a framework for managing complex genetic and epigenetic information about the mouse brain. The atlas and associated tools may be accessed at http://www.loni.ucla.edu/MAP.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/mackenzie-ja-2004.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{malandain:ni:2004, AUTHOR = {Grégoire Malandain and Éric Bardinet and Koen Nelissen and Wim Vanduffel}, JOURNAL = {NeuroImage}, MONTH = {September}, OPTNOTE = {}, NUMBER = {1}, PAGES = {111--127}, TITLE = {Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations}, VOLUME = {23}, YEAR = {2004}, ABSTRACT = {In the past years, the development of 3-D medical imaging has enabled the 3-D imaging of in vivo tissues, from an anatomical (MR, CT) or even functional (fMRI, PET, SPECT) point of view. However, despite immense technological progress, the resolution of these images is still short of the level of anatomical or functional details that in vitro imaging (e.g. histology, autoradiography) permits. The motivation of this work is to compare fMRI activations to activations observed in autoradiographic images from the same animals. We aim to fuse post-mortem autoradiographic data with a pre-mortem anatomical MR image. We first reconstruct a 3-D volume from the 2-D autoradiographic sections, coherent both in geometry and intensity. Then, this volume is fused with the MR image. This way, we ensure that the reconstructed 3-D volume can be superimposed onto the MR image that represents the reference anatomy. We demonstrate that this fusion can be achieved by using only simple global transformations (rigid and/or affine, 2-D and 3-D), while yielding very satisfactory results.}, DOI = {10.1016/j.neuroimage.2004.04.038}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/malandain-neuroimage-2004.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{peeters-kornprobst:ijist:2004, AUTHOR = {R.R. Peeters and P. Kornprobst and M. Nikolova and S. Sunaert and T. Vieville and G. Malandain and R. Deriche and O. Faugeras and M. Ng and Van Hecke, P.}, JOURNAL = {International Journal of Imaging Systems and Technology}, OPTMONTH = {}, NOTE = {Special issue on High Resolution Image Reconstruction}, NUMBER = {3}, PAGES = {131--138}, TITLE = {The use of superresolution techniques to reduce slice thickness in functional MRI}, VOLUME = {14}, YEAR = {2004}, ABSTRACT = {The problem of increasing the slice resolution of functional MRI (fMRI) images without a loss in signal-to-noise ratio is considered. In standard fMRI experiments, increasing the slice resolution by a certain factor decreases the signal-to-noise ratio of the images with the same factor. For this purpose an adapted EPI MRI acquisition protocol is proposed, allowing one to acquire slice-shifted images from which one can generate interpolated super-resolution images, with an increased resolution in the slice direction. To solve the problem of correctness and robustness of the created super-resolution images from these slice-shifted datasets, the use of discontinuity preserving regularization methods is proposed. Tests on real morphological, synthetic functional, and real functional MR datasets have been performed, by comparing the obtained super-resolution datasets with high-resolution reference datasets. In the morphological experiments the image spatial resolution of the different types of images are compared. In the synthetic and real fMRI experiments, on the other hand, the quality of the different datasets is studied as function of their resulting activation maps. From the results obtained in this study, we conclude that the proposed super-resolution techniques can both improve the signal-to-noise ratio and augment the detectability of small activated areas in fMRI image sets acquired with thicker slices.}, DOI = {10.1002/ima.20016}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {fMRI, Super-Resolution algorithm, SNR}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pitiot:Neuroimage:2004, AUTHOR = {A. Pitiot and H. Delingette and P. M. Thompson and N. Ayache}, JOURNAL = {NeuroImage}, OPTMONTH = {}, NOTE = {Special Issue: Mathematics in Brain Imaging}, NUMBER = {supplement 1}, PAGES = {S85--S96}, TITLE = {Expert Knowledge Guided Segmentation System for Brain MRI}, VOLUME = {23}, YEAR = {2004}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Pitiot/pitiot-neuroimage2004.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Sermesant:JCMR:04, AUTHOR = {M. Sermesant and K. Rhode and S. Hegde and G. Sanchez-Ortiz and D. Rueckert and P. Lambiase and C. Bucknall and D. Hill and R. Razavi}, JOURNAL = {Journal of Cardiovascular Magnetic Resonance}, OPTMONTH = {}, NOTE = {abstract}, NUMBER = {1}, PAGES = {123--125}, TITLE = {Electromechanical Modelling of the Myocardium using XMR Interventional Imaging}, VOLUME = {6}, YEAR = {2004}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{simon:neuroimage:04, AUTHOR = {Olivier Simon and Ferath Kherif and Guillaume Flandin and Jean-Baptiste Poline and Denis Rivière and Jean-François Mangin and Denis LeBihan and Stanislas Dehaene}, JOURNAL = {NeuroImage}, MONTH = {November}, OPTNOTE = {}, NUMBER = {3}, PAGES = {1192--1202}, TITLE = {Automatized clustering and functional geometry of human parietofrontal networks for language, space, and number}, VOLUME = {23}, YEAR = {2004}, ABSTRACT = {Human functional MRI studies frequently reveal the joint activation of parietal and of lateral and mesial frontal areas during various cognitive tasks. To analyze the geometrical organization of those networks, we used an automatized clustering algorithm that g parcels out sets of areas based on their similar profile of task-related activations or deactivations. This algorithm allowed us to reanalyze published fMRI data (Simon, O., Mangin, J.F., Cohen, L., Le Bihan, D., Dehaene, S., 2002. Topographical layout of hand, eye, calculation, and language-related areas in the human parietal lobe. Neuron 33, 475-487) and to reproduce the previously observed geometrical organization of activations for saccades, attention, grasping, pointing, calculation, and language processing in the parietal lobe. Further, we show that this organization extends to lateral and mesial prefrontal regions. Relative to the parietal lobe, the prefrontal functional geometry is characterized by a partially symmetrical anteroposterior ordering of activations, a decreased representation of effector-specific tasks, and a greater emphasis on higher cognitive functions of attention, higher-order spatial representation, calculation, and language. Anatomically, our results in humans are closely homologous to the known connectivity of parietal and frontal regions in the macaque monkey.}, DOI = {10.1016/j.neuroimage.2004.09.023}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/hal-00349681/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Soler:Electricien:2004, AUTHOR = {Luc Soler and Nicholas Ayache and Stéphane Nicolau and Xavier Pennec and Clément Forest and Hervé Delingette and Jacques Marescaux}, JOURNAL = {La Revue de l'Electricité et de l'Electronique}, MONTH = {janvier}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {64--71}, TITLE = {Traitement d'images médicales pour la planification, la simulation et l'aide intra-opératoire des actes chirurgicaux}, OPTVOLUME = {}, YEAR = {2004}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Soler/Soler_Electrique_204.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Stefanescu:MEDIA:04, AUTHOR = {Radu Stefanescu and Xavier Pennec and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {September}, OPTNOTE = {}, NUMBER = {3}, PAGES = {325--342}, TITLE = {Grid Powered Nonlinear Image Registration with Locally Adaptive Regularization}, VOLUME = {8}, YEAR = {2004}, OPTABSTRACT = {}, DOI = {10.1016/j.media.2004.06.010}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {non-rigid registration, adaptive regularization, grid, parallel}, URL = {https://www-sop.inria.fr/asclepios/Publications/Stefanescu/media04.pdf}, OPTURL-PUBLISHER = {}, PMID = {15450226}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Stefanescu:PPL:04, AUTHOR = {Radu Stefanescu and Xavier Pennec and Nicholas Ayache}, JOURNAL = {Parallel Processing Letters}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {197--216}, TITLE = {Grid-Enabled Non-Rigid Registration of Medical Images}, VOLUME = {14}, YEAR = {2004}, OPTABSTRACT = {}, DOI = {10.1142/S0129626404001830}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {grid, non-rigid registration, parallel, cluster}, URL = {https://www-sop.inria.fr/asclepios/Publications/Stefanescu/ParallelDemons.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Delingette:HNA:04, OPTADDRESS = {}, AUTHOR = {H. Delingette and N. Ayache}, BOOKTITLE = {Computational Models for the Human Body}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {N. Ayache}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {453--550}, PUBLISHER = {Elsevier}, SERIES = {Handbook of Numerical Analysis (Ed : Ph. Ciarlet)}, TITLE = {Soft Tissue Modeling for Surgery Simulation}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2004}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/hna-delingette.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Soler:ImageriePhotonique:2004, OPTADDRESS = {}, AUTHOR = {Luc Soler and Nicholas Ayache and Stéphane Nicolau and Xavier Pennec and Clément Forest and Hervé Delingette and Didier Mutter and Jacques Marescaux}, BOOKTITLE = {Imagerie et Photonique pour les sciences du vivant et la médecine}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {M. Faupel and P. Smigielski and R. Grzymala}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {19-31}, PUBLISHER = {Edition Fontis Media}, OPTSERIES = {}, TITLE = {Traitements d'images médicales pour la planification, la simulation et l'aide intra-opératoire des actes chirurgicaux}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2004}, OPTABSTRACT = {}, OPTDOI = {}, ISBN = {2-88476-005-9}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Ayache-edito-TMI03, AUTHOR = {N. Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {October}, OPTNOTE = {}, NUMBER = {10}, PAGES = {1185--1201}, TITLE = {Epidaure: a Research Project in Medical Image Analysis, Simulation and Robotics at INRIA}, VOLUME = {22}, YEAR = {2003}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Ayache/Ayache-editorial-ieee-tmi.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, POSTSCRIPT = {https://www-sop.inria.fr/asclepios/Publications/Ayache/Ayache-editorial-ieee-tmi.ps.gz}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bondiau-malandain-al:mp:2003, AUTHOR = {Pierre-Yves Bondiau and Grégoire Malandain and Pierre Chauvel and Frédérique Peyrade and Adel Courdi and Nicole Iborra and Jean-Pierre Caujolle and Pierre Gastaud}, JOURNAL = {Medical Physics}, MONTH = {June}, OPTNOTE = {}, NUMBER = {6}, PAGES = {1013-1020}, TITLE = {Automatic three-dimensional model for protontherapy of the eye: Preliminary results}, VOLUME = {30}, YEAR = {2003}, ABSTRACT = {Recently, radiotherapy possibilities have been dramatically increased by software and hardware developments. Improvements in medical imaging devices have increased the importance of three-dimensional (3D) images as the complete examination of these data by a physician is not possible. Computer techniques are needed to present only the pertinent information for clinical applications. We describe a technique for an automatic 3D reconstruction of the eye and CT scan merging with fundus photographs (retinography). The final result is a "virtual eye" to guide ocular tumor protontherapy. First, we make specific software to automatically detect the position of the eyeball, the optical nerve, and the lens in the CT scan. We obtain a 3D eye reconstruction using this automatic method. Second, we describe the retinography and demonstrate the projection of this modality. Then we combine retinography with a reconstructed eye, using a CT scan to get a virtual eye. The result is a computer 3D scene rendering a virtual eye into a skull reconstruction. The virtual eye can be useful for the simulation, the planning, and the control of ocular tumor protontherapy. It can be adapted to treatment planning to automatically detect eye and organs at risk position. It should be highlighted that all the image processing is fully automatic to allow the reproduction of results, this is a useful property to conduct a consistent clinical validation. The automatic localization of the organ at risk in a CT scan or an MRI by automatic software could be of great interest for radiotherapy in the future for comparison of one patient at different times, the comparison of different treatments centers, the possibility of pooling results of different treatments centers, the automatic generation of doses-volumes histograms, the comparison between different treatment planning for the same patient and the comparison between different patients at the same time. It will also be less time consuming.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Cachier:CVIU:03, AUTHOR = {Pascal Cachier and Eric Bardinet and Didier Dormont and Xavier Pennec and Nicholas Ayache}, JOURNAL = {Computer Vision and Image Understanding}, MONTH = {Feb.-march}, NOTE = {Special Issue on Nonrigid Registration}, NUMBER = {2-3}, PAGES = {272--298}, TITLE = {Iconic Feature Based Nonrigid Registration: The PASHA Algorithm}, VOLUME = {89}, YEAR = {2003}, OPTABSTRACT = {}, DOI = {10.1016/S1077-3142(03)00002-X}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, similarity measures, deformations}, URL = {https://www-sop.inria.fr/asclepios/Publications/Cachier/Cachier_CVIU_2003.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Clatz:Mec_et_ind:03, AUTHOR = {Olivier Clatz and Hervé Delingette and Eric Bardinet and Didier Dormont and Nicholas Ayache}, JOURNAL = {Mécanique et Industrie}, OPTMONTH = {}, NOTE = {Numéro spécial CFM 2003}, NUMBER = {4}, PAGES = {429--433}, PUBLISHER = {Elsevier}, TITLE = {Création d'un Modèle Biomécanique Spécifique du Cerveau par l'Analyse d'Images et son Application à la Neurochirurgie Stéréotaxique}, VOLUME = {4}, YEAR = {2003}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/TI-CFM03-clatz.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{hellier:tmi:2003, AUTHOR = {P Hellier and C Barillot and I Corouge and B Gibaud and Le Goualher, G and D L Collins and A Evans and G Malandain and N Ayache and G E Christensen and H J Johnson}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {September}, OPTNOTE = {}, NUMBER = {9}, PAGES = {1120-30}, TITLE = {Retrospective evaluation of intersubject brain registration}, VOLUME = {22}, YEAR = {2003}, ABSTRACT = {Although numerous methods to register brains of different individuals have been proposed, no work has been done, as far as we know, to evaluate and objectively compare the performances of different nonrigid (or elastic) registration methods on the same database of subjects. In this paper, we propose an evaluation framework, based on global and local measures of the relevance of the registration. We have chosen to focus more particularly on the matching of cortical areas, since intersubject registration methods are dedicated to anatomical and functional normalization, and also because other groups have shown the relevance of such registration methods for deep brain structures. Experiments were conducted using 6 methods on a database of 18 subjects. The global measures used show that the quality of the registration is directly related to the transformation's degrees of freedom. More surprisingly, local measures based on the matching of cortical sulci did not show significant differences between rigid and non rigid methods.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/hellier-tmi-2003.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00536383/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Kherif:NeuroImage:03, AUTHOR = {Ferath Kherif and Jean-Baptiste Poline and Sébastien Meriaux and Habib Benali and Guillaume Flandin and Matthew Brett}, JOURNAL = {NeuroImage}, MONTH = {December}, OPTNOTE = {}, NUMBER = {4}, PAGES = {2197--2208}, TITLE = {Group analysis in functional neuroimaging: selecting subjects using similarity measures}, VOLUME = {20}, YEAR = {2003}, ABSTRACT = {Standard group analyses of fMRI data rely on spatial and temporal averaging of individuals. This averaging operation is only sensible when the mean is a good representation of the group. This is not the case if subjects are not homogeneous, and it is therefore a major concern in fMRI studies to assess this group homogeneity. We present a method that provides relevant distances or similarity measures between temporal series of brain functional images belonging to different subjects. The method allows a multivariate comparison between data sets of several subjects in the time or in the space domain. These analyses assess the global intersubject variability before averaging subjects and drawing conclusions across subjects, at the population level. We adapt the RV coefficient to measure meaningful spatial or temporal similarities and use multidimensional scaling to give a visual representation of each subject's position with respect to other subjects in the group. We also provide a measure for detecting subjects that may be outliers. Results show that the method is a powerful tool to detect subjects with specific temporal or spatial patterns, and that, despite the apparent loss of information, restricting the analysis to a homogeneous subgroup of subjects does not reduce the statistical sensitivity of standard group fMRI analyses.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {fMRI, Group analysis, Multivariate analysis, Statistical analysis}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/cea-00371054/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Lahaye:NeuroImage:03, AUTHOR = {Pierre-Jean Lahaye and Jean-Baptiste Poline and Guillaume Flandin and Silke Dodel and Line Garnero}, JOURNAL = {NeuroImage}, MONTH = {October}, OPTNOTE = {}, NUMBER = {2}, PAGES = {962--974}, TITLE = {Functional connectivity: studying nonlinear, delayed interactions between BOLD signals}, VOLUME = {20}, YEAR = {2003}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {fMRI}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Montagnat:PattRecLetters:03, AUTHOR = {J. Montagnat and M. Sermesant and H. Delingette and G. Malandain and N. Ayache}, JOURNAL = {Pattern Recognition Letters}, MONTH = {February}, NOTE = {Special Issue on Ultrasonic Image Processing and Analysis}, NUMBER = {4-5}, PAGES = {815--828}, TITLE = {Anisotropic filtering for model-based segmentation of 4D cylindrical echocardiographic images}, VOLUME = {24}, YEAR = {2003}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {anisotropic diffusion, 4D, Heart, segmentation, ultrasound, medical images, motion tracking}, URL = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/PRL2003Sermesant.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, POSTSCRIPT = {https://www-sop.inria.fr/asclepios/Publications/Maxime.Sermesant/PRL2003Sermesant.ps.gz}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pennec:Cachier:PattRecLetters:03, AUTHOR = {Xavier Pennec and Pascal Cachier and Nicholas Ayache}, JOURNAL = {Pattern Recognition Letters}, MONTH = {February}, NOTE = {Special Issue on Ultrasonic Image Processing and Analysis}, NUMBER = {4-5}, PAGES = {801--813}, TITLE = {Tracking Brain Deformations in Time-Sequences of 3D US Images}, VOLUME = {24}, YEAR = {2003}, OPTABSTRACT = {}, DOI = {10.1016/S0167-8655(02)00183-6}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, ultrasound, motion tracking, deformations}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.Cachier.Ayache.PattRecLetters02.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Picinbono:GraphMod:03, AUTHOR = {G. Picinbono and H. Delingette and N. Ayache}, JOURNAL = {Graphical Models}, MONTH = {September}, OPTNOTE = {}, NUMBER = {5}, PAGES = {305--321}, TITLE = {Non-Linear Anisotropic Elasticity for Real-Time Surgery Simulation}, VOLUME = {65}, YEAR = {2003}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, simulation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/Picinbono-GM03.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Sermesant:Media:03, AUTHOR = {Maxime Sermesant and Clément Forest and Xavier Pennec and Hervé Delingette and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {December}, OPTNOTE = {}, NUMBER = {4}, PAGES = {475--488}, TITLE = {Deformable biomechanical models: Application to 4D cardiac image analysis}, VOLUME = {7}, YEAR = {2003}, OPTABSTRACT = {}, DOI = {10.1016/S1361-8415(03)00068-9}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/Sermesant-Media03.pdf}, URL-PUBLISHER = {http://authors.elsevier.com/sd/article/S1361841503000689}, PMID = {14561552}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Yelnik:JNeuroSurg:03, AUTHOR = {J. Yelnik and P. Damier and S. Demeret and D. Gervais and E. Bardinet and B.P. Bejjani and C. Francois and J.L. Houeto and I. Arnule and D. Dormont and D. Galanaud and B. Pidoux and P. Cornu and Y. Agid}, JOURNAL = {Journal of Neurosurgery}, MONTH = {July}, OPTNOTE = {}, NUMBER = {1}, PAGES = {89--99}, TITLE = {Localization of stimulating electrodes in patients with Parkinson disease by using a three-dimensional atlas-magnetic resonance imaging coregistration method}, VOLUME = {99}, YEAR = {2003}, ABSTRACT = {OBJECT: The aim of this study was to correlate the clinical improvement in patients with Parkinson disease (PD) treated using deep brain stimulation (DBS) of the subthalamic nucleus (STN) with the precise anatomical localization of stimulating electrodes. METHODS: Localization was determined by superimposing figures from an anatomical atlas with postoperative magnetic resonance (MR) images obtained in each patient. This approach was validated by an analysis of experimental and clinical MR images of the electrode, and the development of a three-dimensional (3D) atlas-MR imaging coregistration method. The PD motor score was assessed through two contacts for each of two electrodes implanted in 10 patients: the "therapeutic contact" and the "distant contact" (that is, the next but one to the therapeutic contact). Seventeen therapeutic contacts were located within or on the border of the STN, most of which were associated with significant improvement of the four PD symptoms tested. Therapeutic contacts located in other structures (zona incerta, lenticular fasciculus, or midbrain reticular formation) were also linked to a significant positive effect. Stimulation applied through distant contacts located in the STN improved symptoms of PD, whereas that delivered through distant contacts in the remaining structures had variable effects ranging from worsening of symptoms to their improvement. CONCLUSIONS: The authors have demonstrated that 3D atlas-MR imaging coregistration is a reliable method for the precise localization of DBS electrodes on postoperative MR images. In addition, they have confirmed that although the STN is the main target during DBS treatment for PD, stimulation of surrounding regions, particularly the zona incerta or the lenticular fasciculus, can also improve symptoms of PD.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Gonzalez:Media:02, AUTHOR = {González Ballester, M. A. and A. Zisserman and M. Brady}, JOURNAL = {Medical Image Analysis}, MONTH = {December}, OPTNOTE = {}, NUMBER = {4}, PAGES = {389--405}, PUBLISHER = {Elsevier}, TITLE = {Estimation of the Partial Volume Effect in MRI}, VOLUME = {6}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gonzalez/Gonzalez_MedIA_2002.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Jannin-edito-TMI02, AUTHOR = {P. Jannin and J.M. Fitzpatrick and D.J. Hawkes and X. Pennec and R. Shahidi and M.W. Vannier}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {December}, OPTNOTE = {}, NUMBER = {12}, PAGES = {1445--1449}, TITLE = {Validation of Medical Image Processing in Image-guided Therapy}, VOLUME = {21}, YEAR = {2002}, OPTABSTRACT = {}, DOI = {10.1109/TMI.2002.806568}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, URL-PUBLISHER = {http://ieeexplore.ieee.org/xpl/tocresult.jsp?isYear=2002&isnumber=26419}, PMID = {12588028}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inserm-00331766/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Bardinet:CompNeurol:2002, AUTHOR = {Carine Karachi and Chantal François and Karine Parain and Eric Bardinet and Dominique Tandé and Etienne Hirsch and Jérôme Yelnik}, JOURNAL = {Journal of Comparative Neurology}, MONTH = {August}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {122--134}, TITLE = {Three-dimensional cartography of functional territories in the human striatopallidal complex by using calbindin immunoreactivity}, VOLUME = {450(2)}, YEAR = {2002}, ABSTRACT = {This anatomic study presents an analysis of the distribution of calbindin immunohistochemistry in the human striatopallidal complex. Entire brains were sectioned perpendicularly to the mid-commissural line into 70-microm-thick sections. Every tenth section was immunostained for calbindin. Calbindin labeling exhibited a gradient on the basis of which three different regions were defined: poorly labeled, strongly labeled, and intermediate. Corresponding contours were traced in individual sections and reformatted as three-dimensional structures. The poorly labeled region corresponded to the dorsal part of the striatum and to the central part of the pallidum. The strongly labeled region included the ventral part of the striatum, the subcommissural part of the external pallidum but also the adjacent portion of its suscommissural part, and the anterior pole of the internal pallidum. The intermediate region was located between the poorly and strongly labeled regions. As axonal tracing and immunohistochemical studies in monkeys show a similar pattern, poorly, intermediate, and strongly labeled regions were considered as the sensorimotor, associative, and limbic territories of the human striatopallidal complex, respectively. However, the boundaries between these territories were not sharp but formed gradients of labeling, which suggests overlapping between adjacent territories. Similarly, the ventral boundary of the striatopallidal complex was blurred, suggesting a structural intermingling with the substantia innominata. This three-dimensional partitioning of the human striatopallidal complex could help to define functional targets for high-frequency stimulation with greater accuracy and help to identify new stimulation sites.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Kherif:NeuroImage:02, AUTHOR = {Ferath Kherif and Jean-Baptiste Poline and Guillaume Flandin and Habib Benali and Olivier Simon and Stanislas Dehaene and Keith J. Worsley}, JOURNAL = {NeuroImage}, MONTH = {August}, OPTNOTE = {}, NUMBER = {4}, PAGES = {1068--1083}, TITLE = {Multivariate Model Specification for fMRI Data}, VOLUME = {16}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {fMRI, model selection, multivariate analysis}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{malandain-boissonnat:ijcga:2002, AUTHOR = {Grégoire Malandain and Jean-Daniel Boissonnat}, JOURNAL = {International Journal of Computational Geometry & Applications}, MONTH = {December}, OPTNOTE = {}, NUMBER = {6}, PAGES = {489--510}, TITLE = {Computing the Diameter of a Point Set}, VOLUME = {12}, YEAR = {2002}, ABSTRACT = {Given a finite set of points ${\cal P}$ in ${\R}^d$, the diameter of $\cal P$ is defined as the maximum distance between two points of $\cal P$. We propose a very simple algorithm to compute the diameter of a finite set of points. Although the algorithm is not worst-case optimal, an extensive experimental study has shown that it is extremely fast for a large variety of point distributions. In addition, we propose a comparison with the recent approach of Har-Peled and derive hybrid algorithms to combine advantages of both approaches.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {computational geometry, diameter, width, approximation, point sets, furthest neighbors, double normal}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/malandain-ijcga-2002.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Picinbono-CRAS02, AUTHOR = {G. Picinbono and H. Delingette and N. Ayache}, JOURNAL = {Les Comptes Rendus de l'Académie des Sciences (CRAS), C.R. Biologies}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {335-344}, TITLE = {Modèle déformable élastique non-linéaire pour la simulation de chirurgie en temps réel}, VOLUME = {325}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, simulation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/Picinbono-cras.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Picinbono:VCA:01, AUTHOR = {G. Picinbono and J-C. Lombardo and H. Delingette and N. Ayache}, JOURNAL = {Journal of Visualisation and Computer Animation}, MONTH = {July}, OPTNOTE = {}, NUMBER = {3}, PAGES = {147-167}, TITLE = {Improving realism of a surgery simulator: linear anisotropic elasticity, complex interactions and force extrapolation}, VOLUME = {13}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, simulation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/Picinbono-vca.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pitiot:TMI:02, AUTHOR = {Alain Pitiot and Paul M. Thompson and Arthur W. Toga}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {August}, OPTNOTE = {}, NUMBER = {8}, PAGES = {910--923}, TITLE = {Adaptive Elastic Segmentation of Brain MRI via Shape Model Guided Evolutionary Programming}, VOLUME = {21}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {MRI}, URL = {https://www-sop.inria.fr/asclepios/Publications/Pitiot/pitiot-tmi-21-8.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Prima:TMI:02, AUTHOR = {S. Prima and S. Ourselin and N. Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {February}, OPTNOTE = {}, NUMBER = {2}, PAGES = {122--138}, TITLE = {Computation of the Mid-Sagittal Plane in 3D Brain Images}, VOLUME = {21}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching}, URL = {https://www-sop.inria.fr/asclepios/Publications/Prima/tmi.final.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, POSTSCRIPT = {https://www-sop.inria.fr/asclepios/Publications/Prima/tmi.final.ps.gz}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Rey:MEDIA:02, AUTHOR = {David Rey and Gérard Subsol and Hervé Delingette and Nicholas Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {June}, OPTNOTE = {}, NUMBER = {2}, PAGES = {163-179}, TITLE = {Automatic Detection and Segmentation of Evolving Processes in 3D Medical Images: Application to Multiple Sclerosis}, VOLUME = {6}, YEAR = {2002}, ABSTRACT = {The study of temporal series of medical images can be helpful for physicians to perform pertinent diagnoses and to help them in the follow-up of a patient: in some diseases, lesions, tumors or anatomical structures vary over time in size, position, composition, etc., either because of a natural pathological process or under the effect of a drug or a therapy. It is a laborious and subjective task to visually and manually analyze such images. Thus the objective of this work was to automatically detect regions with apparent local volume variation with a vector field operator applied to the local displacement field obtained after a non-rigid registration between two successive temporal images. On the other hand, quantitative measurements, such as the volume variation of lesions or segmentation of evolving lesions, are important. By studying the information of apparent shrinking areas in the direct and reverse displacement fields between images, we are able to segment evolving lesions. Then we propose a method to segment lesions in a whole temporal series of images. In this article we apply this approach to automatically detect and segment multiple sclerosis lesions that evolve in time series of MRI scans of the brain. At this stage, we have only applied the approach to a few experimental cases to demonstrate its potential. A clinical validation remains to be done, which will require important additional work.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Automation, Brain, pathology, Human, Image Processing Computer-Assisted, methods, Imaging Three-Dimensional, methods, Magnetic Resonance Imaging, methods, Models Neurological, Multiple Sclerosis, diagnosis, Reproducibility of Results, Sensitivity and Specificity, Support Non-U.S. Gov't}, URL = {https://www-sop.inria.fr/asclepios/Publications/Rey/rey-media-2002.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Ayache:IMIA:02, OPTADDRESS = {}, AUTHOR = {N. Ayache}, BOOKTITLE = {Medical Imaging Informatics (IMIA Yearbook of Medical Informatics)}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {R Haux and C Kulikowski}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Schattauer Verlagsgesellschaft mbH, Stuttgart}, OPTSERIES = {}, TITLE = {Medical Imaging Informatics. From Digital Anatomy to Virtual Scapels and Image Guided Therapy}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, ISBN = {3-7945-2193-5}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/ayache-preface-yearbook02.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Subsol-BAR-2002, OPTADDRESS = {}, AUTHOR = {G. Subsol and B. Mafart and A. Silvestre and de Lumley, M.A.}, BOOKTITLE = {Three-Dimensional Imaging in Paleoanthropology and Prehistoric Archaeology}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {B. Mafart and H. Delingette and G. Subsol}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {37--45}, PUBLISHER = {BAR International Series 1049}, OPTSERIES = {}, TITLE = {3D Image Processing for the Study of the Evolution of the Shape of the Human Skull: Presentation of the Tools and Preliminary Results}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2002}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://www.lirmm.fr/~subsol/BAR.0901.a.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Delingette:CVIU:01, AUTHOR = {H. Delingette and J. Montagnat}, JOURNAL = {Computer Vision and Image Understanding}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {140--171}, TITLE = {Shape and Topology Constraints on Parametric Active Contours}, VOLUME = {83}, YEAR = {2001}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, reconstruction}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/cviu-2001.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Guimon:Roche:TMI:01, AUTHOR = {A. Guimond and A. Roche and N. Ayache and J. Meunier}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {58--69}, TITLE = {Multimodal Brain Warping Using the Demons Algorithm and Adaptative Intensity Corrections}, VOLUME = {20}, YEAR = {2001}, ABSTRACT = {This paper presents an original method for three-dimensional elastic registration of multimodal images. We propose to make use of a scheme that iterates between correcting for intensity differences between images and performing standard monomodal registration. The core of our contribution resides in providing a method that finds the transformation that maps the intensities of one image to those of another. It makes the assumption that there are at most two functional dependencies between the intensities of structures present in the images to register, and relies on robust estimation techniques to evaluate these functions. We provide results showing successful registration between several imaging modalities involving segmentations, T1 magnetic resonance (MR), T2 MR, proton density (PD) MR and computed tomography (CT). We also argue that our intensity modeling may be more appropriate than mutual information (MI) in the context of evaluating high-dimensional deformations, as it puts more constraints on the parameters to be estimated and, thus, permits a better search of the parameter space.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, deformations}, URL = {https://www-sop.inria.fr/asclepios/Publications/Roche/tmi01.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, POSTSCRIPT = {https://www-sop.inria.fr/asclepios/Publications/Roche/tmi01.ps.gz}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Linguraru:Acta:01, AUTHOR = {M.G. Linguraru and J.M. Brady}, JOURNAL = {Acta Universitatis Cibiniensis, Technical Series}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {49--60}, TITLE = {An Anisotropic Diffusion Approach for Early Detection of Breast Cancer}, VOLUME = {XLIII}, YEAR = {2001}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Linguraru/Linguraru_ACTA_2001.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Gonzalez:MedReview:2001, AUTHOR = {Y. Machida and Y. Hamamura and González Ballester, M. A. and S. Nozaki and K. Okamoto and S. Uchizono and N. Ichinose and Y. Kassai and H. Kanazawa and Y. Usui}, JOURNAL = {Medical Review}, MONTH = {November}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {52-58}, TITLE = {Development of MR Parallel Imaging, SPEEDER (in Japanese)}, VOLUME = {83}, YEAR = {2001}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Migneco:Neuroimage:01, AUTHOR = {O. Migneco and M. Benoit and P.M. Koulibaly and I. Dygai and C. Bertogliati and P. Desvignes and Ph. Robert and G. Malandain and F. Bussière and J. Darcourt}, JOURNAL = {NeuroImage}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {5}, PAGES = {896--902}, TITLE = {Perfusion brain SPECT and Statistical Parametric Mapping analysis indicate that apathy is a cingulate syndrome: a study in Alzheimer's disease and non-demented patients}, VOLUME = {13}, YEAR = {2001}, ABSTRACT = {Apathy is the most frequent behavioral symptom in Alzheimer's disease and is also frequently reported in other brain organic disorders occurring in the elderly. Based on the literature, we hypothesized that apathy was related to an anterior cingulate hypofunction. Forty-one subjects were studied. According to ICD 10 diagnostic criteria, 28 patients had Alzheimer dementia (demented: diagnostic group 1), and 13 had organic personality disorders or mild cognitive impairment not attributable to dementia (nondemented: diagnostic group 2). Apathy was evaluated by the Neuro-Psychiatric Inventory. As a result each diagnostic group was divided into two symptomatic subgroups: apathetic or nonapathetic. Brain perfusion was measured by 99mTc-labeled bicisate (ECD) brain SPECT and the images were compared using Statistical Parametric Mapping (SPM96). We began by comparing apathetic vs nonapathetic patients, whatever their diagnostic group (whole population), then analyzed them within each group. Twenty-one subjects were apathetic (14 in group 1 and 7 in group 2) and 20 were not (14 in group 1 and 6 in group 2). For the whole population, the Z map showed a significant decrease in ECD uptake for the apathetic patients in the anterior cingulate (P < 0.002) bilaterally. This area was also identified as hypoactive by SPM analysis in the demented (P < 0.035) and in the nondemented (P < 0.02) apathetic patient groups. Finally, conjunction analysis indicated that the anterior cingulate was the common hypoactive structure of the two apathetic subgroups (Z = 4.35, P < 0.0009). These results point to a close relationship between apathy and the anterior cingulate region.}, DOI = {10.1006/nimg.2000.0741}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {apathy, cingulate, statistical parametric mapping, ECD}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Montagnat:IVC:01, AUTHOR = {J. Montagnat and H. Delingette and N. Ayache}, JOURNAL = {Image and Vision Computing}, MONTH = {December}, OPTNOTE = {}, NUMBER = {14}, PAGES = {1023-1040}, TITLE = {A review of deformable surfaces: topology, geometry and deformation}, VOLUME = {19}, YEAR = {2001}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, reconstruction}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/ivc00.montagnat.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Ourselin:IVC:01, AUTHOR = {Sébastien Ourselin and Alexis Roche and Gérard Subsol and Xavier Pennec and Nicholas Ayache}, JOURNAL = {Image and Vision Computing}, MONTH = {January}, OPTNOTE = {}, NUMBER = {1-2}, PAGES = {25--31}, TITLE = {Reconstructing a 3D Structure from Serial Histological Sections}, VOLUME = {19}, YEAR = {2001}, OPTABSTRACT = {}, DOI = {10.1016/S0262-8856(00)00052-4}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, histology}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Ourselin_Roche_IVC2001.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/cea-00333669/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Roche:TMI:01, AUTHOR = {Alexis Roche and Xavier Pennec and Grégoire Malandain and Nicholas Ayache}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {October}, OPTNOTE = {}, NUMBER = {10}, PAGES = {1038--1049}, TITLE = {Rigid Registration of 3D Ultrasound with MR Images: a New Approach Combining Intensity and Gradient Information}, VOLUME = {20}, YEAR = {2001}, ABSTRACT = {We present a new image-based technique to rigidly register intraoperative three-dimensional ultrasound (US) with preoperative magnetic resonance (MR) images. Automatic registration is achieved by maximization of a similarity measure which generalizes the correlation ratio, and whose novelty is to incorporate multivariate information from the MR data (intensity and gradient). In addition, the similarity measure is built upon a robust intensity-based distance measure, which makes it possible to handle a variety of US artifacts. A cross-validation study has been carried out using a number of phantom and clinical data. This indicates that the method is quite robust and that the worst registration errors are of the order of the MR image resolution.}, DOI = {10.1109/42.959301}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, ultrasound, magnetic resonance, correlation ratio, robust estimation, multimodal}, URL = {https://www-sop.inria.fr/asclepios/Publications/Roche/Roche_MR_US_TMI_2001.pdf}, URL-PUBLISHER = {http://ieeexplore.ieee.org/xpl/tocresult.jsp?isYear=2001&isnumber=20734}, PMID = {11686439}, POSTSCRIPT = {https://www-sop.inria.fr/asclepios/Publications/Roche/roche-tmi01.ps.gz}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/cea-00333699/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{soler:cas:2001, AUTHOR = {L Soler and H Delingette and G Malandain and J Montagnat and N Ayache and C Koehl and O Dourthe and B Malassagne and M Smith and D Mutter and J Marescaux}, JOURNAL = {Comput Aided Surg}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {131-42}, TITLE = {Fully automatic anatomical, pathological, and functional segmentation from CT scans for hepatic surgery}, VOLUME = {6}, YEAR = {2001}, ABSTRACT = {OBJECTIVE: To improve the planning of hepatic surgery, we have developed a fully automatic anatomical, pathological, and functional segmentation of the liver derived from a spiral CT scan. MATERIALS AND METHODS: From a 2 mm-thick enhanced spiral CT scan, the first stage automatically delineates skin, bones, lungs, kidneys, and spleen by combining the use of thresholding, mathematical morphology, and distance maps. Next, a reference 3D model is immersed in the image and automatically deformed to the liver contours. Then an automatic Gaussian fitting on the imaging histogram estimates the intensities of parenchyma, vessels, and lesions. This first result is next improved through an original topological and geometrical analysis, providing an automatic delineation of lesions and veins. Finally, a topological and geometrical analysis based on medical knowledge provides hepatic functional information that is invisible in medical imaging: portal vein labeling and hepatic anatomical segmentation according to the Couinaud classification. RESULTS: Clinical validation performed on more than 30 patients shows that delineation of anatomical structures by this method is often more sensitive and more specific than manual delineation by a radiologist. CONCLUSION: This study describes the methodology used to create the automatic segmentation of the liver with delineation of important anatomical, pathological, and functional structures from a routine CT scan. Using the methods proposed in this study, we have confirmed the accuracy and utility of the creation of a 3D liver model compared with the conventional reading of the CT scan by a radiologist. This work may allow improved preoperative planning of hepatic surgery by more precisely delineating liver pathology and its relationship to normal hepatic structures. In the future, this data may be integrated with computer-assisted surgery and thus represents a first step towards the development of an augmented-reality surgical system.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Human, Image Processing Computer-Assisted, methods, Liver, anatomy & histology, Support Non-U.S. Gov't, Surgery Computer-Assisted, Tomography X-Ray Computed}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/cas2001_soler.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache2000, AUTHOR = {N. Ayache}, JOURNAL = {Technique et Science Informatiques}, MONTH = {January}, OPTNOTE = {}, NUMBER = {1}, OPTPAGES = {}, TITLE = {Imagerie et robotique médicales: du microscope informatique au simulateur de chirurgie}, VOLUME = {19}, YEAR = {2000}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cotinVisualComputer, AUTHOR = {S. Cotin and H. Delingette and N. Ayache}, JOURNAL = {The Visual Computer}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {8}, PAGES = {437--452}, TITLE = {A Hybrid Elastic Model allowing Real-Time Cutting, Deformations and Force-Feedback for Surgery Training and Simulation}, VOLUME = {16}, YEAR = {2000}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, simulation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/TensorMass-VC2000.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache2000b, AUTHOR = {J. Duncan and N. Ayache}, JOURNAL = {IEEE Transactions on Pattern Analysis and Machine Intelligence}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {85--106}, TITLE = {Medical Image Analysis: Progress over two decades and the challenges ahead}, VOLUME = {22}, YEAR = {2000}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/Ayache_Duncan_2000.pdf}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Gonzalez:Media:2000, AUTHOR = {González Ballester, M. A. and A. Zisserman and M. Brady}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {189--200}, PUBLISHER = {Elsevier}, TITLE = {Segmentation and Measurement of Brain Structures in MRI Including Confidence Bounds}, VOLUME = {4}, YEAR = {2000}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gonzalez/Gonzalez_MedIA_2000.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{guimond99.1, AUTHOR = {A. Guimond and J. Meunier and J.-P. Thirion}, JOURNAL = {Computer Vision and Image Understanding}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {192-210}, TITLE = {Average Brain Models: A Convergence Study}, VOLUME = {77}, YEAR = {2000}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {atlas}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{krissian-al2000, AUTHOR = {K. Krissian and G. Malandain and N. Ayache and R. Vaillant and Y. Trousset}, JOURNAL = {Computer Vision and Image Understanding}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {130--171}, TITLE = {Model-Based Detection of Tubular Structures in 3D Images}, VOLUME = {80}, YEAR = {2000}, ABSTRACT = {Detection of tubular structures in 3D images is an important issue for vascular detection in medical imaging. We present in this paper a new approach for centerline detection and reconstruction of 3D tubular structures. Several models of vessels are introduced for estimating the sensivity of the image second order derivatives according to elliptical cross-section, to curvature of the axis, or to partial volume effects. Our approach uses a multiscale analysis for extracting vessels of different sizes according to the scale. For a given model of vessel, we derive an analytic expression of the relationship between the radius of the structure and the scale at which it is detected. The algorithm gives both centerline extraction and radius estimation of the vessels allowing their reconstruction. The method has been tested on both synthetic and real images, with encouraging results. This work was done in collaboration with GEMS (General Electric Medical Systems, Buc, France).}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {filtering, vessel detection, multiscale analysis, segmentation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/krissian-cviu-2000.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Roche:IJST:2000, AUTHOR = {A. Roche and G. Malandain and N. Ayache}, JOURNAL = {International Journal of Imaging Systems and Technology}, OPTMONTH = {}, NOTE = {Special Issue on 3D Imaging}, NUMBER = {1}, PAGES = {71--80}, PUBLISHER = {John Wiley and Sons, inc.}, TITLE = {Unifying Maximum Likelihood Approaches in Medical Image Registration}, VOLUME = {11}, YEAR = {2000}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, similarity measures}, URL = {https://www-sop.inria.fr/asclepios/Publications/Roche/ijist00.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, POSTSCRIPT = {https://www-sop.inria.fr/asclepios/Publications/Roche/roche-ijist.ps.gz}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/cea-00333642/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{soler:shti:2000, AUTHOR = {L Soler and H Delingette and G Malandain and N Ayache and C Koehl and J M Clement and O Dourthe and J Marescaux}, JOURNAL = {Stud Health Technol Inform}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {316-22}, TITLE = {An automatic virtual patient reconstruction from CT-scans for hepatic surgical planning}, VOLUME = {70}, YEAR = {2000}, ABSTRACT = {PROBLEM/BACKGROUND: In order to help hepatic surgical planning we perfected automatic 3D reconstruction of patients from conventional CT-scan, and interactive visualization and virtual resection tools. TOOLS AND METHODS: From a conventional abdominal CT-scan, we have developed several methods allowing the automatic 3D reconstruction of skin, bones, kidneys, lung, liver, hepatic lesions, and vessels. These methods are based on deformable modeling or thresholding algorithms followed by the application of mathematical morphological operators. From these anatomical and pathological models, we have developed a new framework for translating anatomical knowledge into geometrical and topological constraints. More precisely, our approach allows to automatically delineate the hepatic and portal veins but also to label the portal vein and finally to build an anatomical segmentation of the liver based on Couinaud definition which is currently used by surgeons all over the world. Finally, we have developed a user friendly interface for the 3D visualization of anatomical and pathological structures, the accurate evaluation of volumes and distances and for the virtual hepatic resection along a user-defined cutting plane. RESULTS: A validation study on a 30 patients database gives 2 mm of precision for liver delineation and less than 1 mm for all other anatomical and pathological structures delineation. An in vivo validation performed during surgery also showed that anatomical segmentation is more precise than the delineation performed by a surgeon based on external landmarks. This surgery planning system has been routinely used by our medical partner, and this has resulted in an improvement of the planning and performance of hepatic surgery procedures. CONCLUSION: We have developed new tools for hepatic surgical planning allowing a better surgery through an automatic delineation and visualization of anatomical and pathological structures. These tools represent a first step towards the development of an augmented reality system combined with computer assisted tele-robotical surgery.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Computer Graphics, Computer Simulation, Hepatectomy, Human, Image Processing Computer-Assisted, Liver Diseases, radiography, Tomography X-Ray Computed, User-Computer Interface}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/soler-shti-2000.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Thirion00a, AUTHOR = {J.-P. Thirion and S. Prima and G. Subsol and N. Roberts}, JOURNAL = {Medical Image Analysis}, MONTH = {June}, OPTNOTE = {}, NUMBER = {2}, PAGES = {111--121}, TITLE = {Statistical Analysis of Normal and Abnormal Dissymmetry in Volumetric Medical Images}, VOLUME = {4}, YEAR = {2000}, ABSTRACT = {We present a general method to study the dissymmetry of anatomical structures such as those found in the human brain. Our method relies on the estimate of 3D dissymmetry fields, the use of 3D vector field operators, and T2 statistics to compute significance maps. We also present a fully automated implementation of this method which relies mainly on the intensive use of a 3D non-rigid inter-patient matching tool. Such a tool is applied successively between the images and their symmetric versions with respect to an arbitrary plane, both to realign the images with respect to the mid-plane of the subject and to compute a dense 3D dissymmetry map. Inter-patient matching is also used to fuse the data of a population of subjects. We then describe three main application fields: the study of the normal dissymmetry within a given population, the comparison of the dissymmetry between two populations, and the detection of the significant abnormal dissymmetries of a patient with respect to a reference population. Finally, we present preliminary results illustrating these three applications for the case of the human brain.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Aphasia, pathology, Brain, anatomy & histology, Computer Simulation, Epilepsies Partial, pathology, Human, Image Processing Computer-Assisted, Imaging Three-Dimensional, Laterality, Magnetic Resonance Imaging, Male}, URL = {https://www-sop.inria.fr/asclepios/Publications/Thirion/Thirion00a.pdf}, URL-PUBLISHER = {http://www.inria.fr/rrrt/RR-3178.html}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00073511/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Pennec:HMIP:00, OPTADDRESS = {}, AUTHOR = {Xavier Pennec and Nicholas Ayache and Jean-Philippe Thirion}, BOOKTITLE = {Handbook of Medical Imaging}, CHAPTER = {31}, OPTEDITION = {}, EDITOR = {I. Bankman}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {499--513}, PUBLISHER = {Academic Press}, OPTSERIES = {}, TITLE = {Landmark-based registration using features identified through differential geometry}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {2000}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, validation, uncertainty}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.HMIP.pdf}, URL-PUBLISHER = {http://www.elsevier.com/wps/find/bookdescription.cws_home/673450/description}, POSTSCRIPT = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.HMIP.ps.gz}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00616082}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Ayache99, AUTHOR = {N. Ayache and G. Subsol}, JOURNAL = {Mundo Cientifico}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {30-33}, TITLE = {El Cerebro in Cuatro Dimensiones}, VOLUME = {203}, YEAR = {1999}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Ayache99-1, AUTHOR = {N. Ayache and G. Subsol}, JOURNAL = {La Recherche}, MONTH = {May}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {46-49}, TITLE = {Le cerveau en quatre dimensions}, VOLUME = {320}, YEAR = {1999}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://www.lirmm.fr/~subsol/laRecherche.0599.pdf}, URL-PUBLISHER = {http://www.larecherche.fr/arch/99/05}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cotin99, AUTHOR = {S. Cotin and H. Delingette and N. Ayache}, JOURNAL = {IEEE Transactions on Visualization and Computer Graphics}, MONTH = {January-March}, OPTNOTE = {}, NUMBER = {1}, PAGES = {62--73}, TITLE = {Real-time elastic deformations of soft tissues for surgery simulation}, VOLUME = {5}, YEAR = {1999}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, simulation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/paper_tvcg.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{delingette-ijcv99, AUTHOR = {H. Delingette}, JOURNAL = {International Journal of Computer Vision}, MONTH = {September}, OPTNOTE = {}, NUMBER = {2}, PAGES = {111-146}, TITLE = {General Object Reconstruction based on Simplex Meshes}, VOLUME = {32}, YEAR = {1999}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, reconstruction}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/ijcv99.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{dugelay-tsi99, AUTHOR = {J.-L. Dugelay and K. Fintzel and S. Valente and H. Delingette}, JOURNAL = {Traitement du signal}, MONTH = {July}, OPTNOTE = {}, NUMBER = {1}, PAGES = {60--72}, TITLE = {Clonage de visage et spatialisation video : Outils pour la téléconférence virtuelle}, VOLUME = {16}, YEAR = {1999}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, reconstruction}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/tsi-dugelay99.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Ourselin99.2, AUTHOR = {S. Ourselin and C. Sattonnet and A. Roche and G. Subsol}, JOURNAL = {Analytical Cellular Pathology}, OPTMONTH = {}, NOTE = {Abstracts of the 1999 Annual Meeting of the Association Française de Cytométrie, Dijon, 12-15 October 1999}, NUMBER = {3}, PAGES = {123}, TITLE = {Automatic alignement of histological sections for 3D reconstruction and analysis}, VOLUME = {18}, YEAR = {1999}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, histology, MRI}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Thirion99, AUTHOR = {J.-P. Thirion and G. Calmon}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {5}, PAGES = {429-441}, TITLE = {Deformation Analysis to Detect and Quantify Active Lesions in Three-Dimensional Medical Image Sequences}, VOLUME = {18}, YEAR = {1999}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Lesion, mass effect, motion field analysis, multiple sclerosis, stereology, volume measurement}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/thirion-tmi-1999.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{webb99.1, AUTHOR = {J. Webb and A. Guimond and N. Roberts and P. Eldridge and D. Chadwick and J. Meunier and J.-P. Thirion}, JOURNAL = {Magnetic Resonance Imaging}, MONTH = {April}, OPTNOTE = {}, NUMBER = {8}, PAGES = {1149-1161}, TITLE = {Automatic detection of hippocampal atrophy on magnetic resonance images}, VOLUME = {17}, YEAR = {1999}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache-pasteur98, AUTHOR = {Nicholas Ayache}, JOURNAL = {Annales de l'Institut Pasteur}, MONTH = {avril--juin}, NOTE = {numéro spécial sur les progrès récents de l'imagerie médicale}, NUMBER = {1}, PAGES = {13--21}, PUBLISHER = {Elsevier}, TITLE = {L'analyse automatique des images médicales, état de l'art et perspectives}, VOLUME = {9}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cotin_mitat, AUTHOR = {N. Ayache and S. Cotin and H. Delingette and J.-M. Clément and J. Marescaux and M. Nord}, JOURNAL = {Journal of Minimally Invasive Therapy and Allied Technologies (MITAT)}, MONTH = {July}, OPTNOTE = {}, NUMBER = {2}, PAGES = {71-77}, TITLE = {Simulation of Endoscopic Surgery}, VOLUME = {7}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, simulation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/mitat.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Bardinet:CVIU:98, AUTHOR = {Eric Bardinet and Laurent D. Cohen and Nicholas Ayache}, JOURNAL = {Computer Vision and Image Understanding}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {39--54}, TITLE = {A parametric deformable model to fit unstructured 3D data}, VOLUME = {71}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Misc/CVIU_Bardinet.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Benayoun:IJCV:98, AUTHOR = {Serge Benayoun and Nicholas Ayache}, JOURNAL = {International Journal of Computer Vision}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {25--40}, TITLE = {Dense non-rigid motion estimation in sequences of medical images using differential constraints}, VOLUME = {26}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, deformations, motion tracking}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/BenayounIJCV1998.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Declerck-98.6, AUTHOR = {J. Declerck and J. Feldmar and N. Ayache}, JOURNAL = {Medical Image Analysis}, MONTH = {June}, OPTNOTE = {}, NUMBER = {2}, PAGES = {197-213}, TITLE = {Definition of a four-dimensional continuous planispheric transformation for the tracking and the analysis of left-ventricle motion}, VOLUME = {2}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Motion tracking, Heart, 4D}, URL = {https://www-sop.inria.fr/asclepios/Publications/Misc/MEDIA2_2.2.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{delingette_ieee98, AUTHOR = {H. Delingette}, JOURNAL = {Proceedings of the IEEE}, MONTH = {April}, NOTE = {Special Issue on Surgery Simulation}, OPTNUMBER = {}, PAGES = {512--523}, TITLE = {Towards Realistic Soft Tissue Modeling in Medical Simulation}, OPTVOLUME = {}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, simulation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/ieee-proceedings98.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Fidrich98d, AUTHOR = {Márta Fidrich}, JOURNAL = {Image and Vision Computing}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {8}, PAGES = {545-556}, TITLE = {Iso-surface Extraction in $n$-D applied to Tracking Feature Curves across Scale}, VOLUME = {16}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Fidrich98b, AUTHOR = {Márta Fidrich and Jean-Philippe Thirion}, JOURNAL = {Computer Vision and Image Understanding}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {72--83}, TITLE = {Stability of Corner Points in Scale Space: The Effect of Small Non-Rigid Deformations}, VOLUME = {72}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{malandain-vidal98, AUTHOR = {G. Malandain and S. Fernández-Vidal}, JOURNAL = {Image and Vision Computing}, MONTH = {April}, OPTNOTE = {}, NUMBER = {5}, PAGES = {317--327}, TITLE = {Euclidean Skeletons}, VOLUME = {16}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, POSTSCRIPT = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/malandain-ivc-1998.ps.gz}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{marescaux:as:1998, AUTHOR = {J Marescaux and J M Clement and V Tassetti and C Koehl and S Cotin and Y Russier and D Mutter and H Delingette and N Ayache}, JOURNAL = {Annals of Surgery}, MONTH = {November}, OPTNOTE = {}, NUMBER = {5}, PAGES = {627-34}, TITLE = {Virtual reality applied to hepatic surgery simulation: the next revolution}, VOLUME = {228}, YEAR = {1998}, ABSTRACT = {OBJECTIVE: This article describes a preliminary work on virtual reality applied to liver surgery and discusses the repercussions of assisted surgical strategy and surgical simulation on tomorrow's surgery. SUMMARY BACKGROUND DATA: Liver surgery is considered difficult because of the complexity and variability of the organ. Common generic tools for presurgical medical image visualization do not fulfill the requirements for the liver, restricting comprehension of a patient's specific liver anatomy. METHODS: Using data from the National Library of Medicine, a realistic three-dimensional image was created, including the envelope and the four internal arborescences. A computer interface was developed to manipulate the organ and to define surgical resection planes according to internal anatomy. The first step of surgical simulation was implemented, providing the organ with real-time deformation computation. RESULTS: The three-dimensional anatomy of the liver could be clearly visualized. The virtual organ could be manipulated and a resection defined depending on the anatomic relations between the arborescences, the tumor, and the external envelope. The resulting parts could also be visualized and manipulated. The simulation allowed the deformation of a liver model in real time by means of a realistic laparoscopic tool. CONCLUSIONS: Three-dimensional visualization of the organ in relation to the pathology is of great help to appreciate the complex anatomy of the liver. Using virtual reality concepts (navigation, interaction, and immersion), surgical planning, training, and teaching for this complex surgical procedure may be possible. The ability to practice a given gesture repeatedly will revolutionize surgical training, and the combination of surgical planning and simulation will improve the efficiency of intervention, leading to optimal care delivery.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Computer Simulation, Digestive System Surgical Procedures, methods, Image Processing Computer-Assisted, Liver, surgery, Support Non-U.S. Gov't, journal, simulation}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{marescaux:chirurgie:1998, AUTHOR = {J Marescaux and J M Clement and M Vix and Y Russier and V Tassetti and D Mutter and S Cotin and N Ayache}, JOURNAL = {Chirurgie}, MONTH = {February}, NOTE = {in french}, NUMBER = {1}, PAGES = {16-24}, TITLE = {[A new concept in surgery of the digestive tract: surgical procedure assisted by computer, from virtual reality to telemanipulation]}, VOLUME = {123}, YEAR = {1998}, ABSTRACT = {Surgical simulation increasingly appears to be an essential aspect of tomorrow's surgery. The development of a hepatic surgery simulator is an advanced concept calling for a new writing system which will transform the medical world: virtual reality. Virtual reality extends the perception of our five senses by representing more than the real state of things by the means of computer sciences and robotics. It consists of three concepts: immersion, navigation and interaction. Three reasons have led us to develop this simulator: the first is to provide the surgeon with a comprehensive visualisation of the organ. The second reasons is to allow for planning and surgical simulation that could be compared with the detailed flight-plan for a commercial jet pilot. The third lies in the fact that virtual reality is an integrated part of the concept of computer assisted surgical procedure. The project consists of a sophisticated simulator which must include five requirements: a) visual fidelity, b) interactivity, c) physical properties, d) physiological properties, e) sensory input and output. In this report we describe how to obtain a realistic 3D model of the liver from bi-dimensional 2D medical images for anatomical and surgical training. The introduction of a tumor and the consequent planning and virtual resection is also described, as are force feedback and real-time interaction.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Anatomy Cross-Sectional, Computer Simulation, English Abstract, Forecasting, Hepatectomy, instrumentation, Human, Image Processing Computer-Assisted, instrumentation, Liver Neoplasms, surgery, Phantoms Imaging, Robotics, instrumentation, Surgical Procedures Operative, trends, User-Computer Interface}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Montagnat-SPAIJ98, AUTHOR = {J. Montagnat and H. Delingette}, JOURNAL = {Signal Processing}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {173--186}, TITLE = {Globally constrained deformable models for 3D object reconstruction}, VOLUME = {71}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, reconstruction}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/spaij.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pennec:Videre:98, AUTHOR = {Xavier Pennec}, JOURNAL = {Videre: Journal of Computer Vision Research}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {58--87}, TITLE = {Toward a generic framework for recognition based on uncertain geometric features}, VOLUME = {1}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, uncertainty}, URL = {http://mitpress.mit.edu/e-journals/Videre/001/articles/v1n2003.pdf}, URL-PUBLISHER = {http://mitpress.mit.edu/e-journals/Videre/001/v12.html}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pennec:CABIOS:98, AUTHOR = {Xavier Pennec and Nicholas Ayache}, JOURNAL = {Bioinformatics}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {6}, PAGES = {516--522}, TITLE = {A geometric algorithm to find small but highly similar 3D substructures in proteins}, VOLUME = {14}, YEAR = {1998}, OPTABSTRACT = {}, DOI = {10.1093/bioinformatics/14.6.516}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, protein structure}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.Bioinformatics98.pdf}, URL-PUBLISHER = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/14/6/516}, PMID = {9694990}, POSTSCRIPT = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.Bioinformatics98.official.ps.gz}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pennec:JMIV:98, AUTHOR = {Xavier Pennec and Nicholas Ayache}, JOURNAL = {Journal of Mathematical Imaging and Vision}, MONTH = {July}, NOTE = {A preliminary version appeared as INRIA Research Report 2820, March 1996.}, NUMBER = {1}, PAGES = {49--67}, TITLE = {Uniform distribution, distance and expectation problems for geometric features processing}, VOLUME = {9}, YEAR = {1998}, OPTABSTRACT = {}, DOI = {10.1023/A:1008270110193}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {statistics, geometry, Riemannian geometry}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.JMIV98.pdf}, URL-PUBLISHER = {http://www.springerlink.com/openurl.asp?genre=article&issn=0924-9907&volume=9&issue=1&spage=49}, OPTPMID = {}, POSTSCRIPT = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.JMIV98.ps.gz}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615085}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{robert-al98, AUTHOR = {L. Robert and G. Malandain}, JOURNAL = {Computer Vision and Image Understanding}, MONTH = {October}, OPTNOTE = {}, NUMBER = {1}, PAGES = {1--9}, TITLE = {Fast Binary Image Processing Using Binary Decision Diagrams}, VOLUME = {72}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{soler-tsi98, AUTHOR = {L. Soler and G. Malandain and H. Delingette}, JOURNAL = {Traitement du signal}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {5}, PAGES = {411-431}, TITLE = {Segmentation automatique : application aux angioscanners 3D du foie}, VOLUME = {15}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, reconstruction}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Subsol98, AUTHOR = {G. Subsol and J.-Ph. Thirion and N. Ayache}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {37-60}, TITLE = {A Scheme for Automatically Building 3D Morphometric Anatomical Atlases: application to a Skull Atlas}, VOLUME = {2}, YEAR = {1998}, ABSTRACT = {We present a general scheme for automatically building a morphometric anatomical atlas. We detail each stage of the method, including the non-rigid registration algorithm, three-dimensional line averaging and statistical processes. We apply the method to obtain a quantitative atlas of skull crest lines. Finally, we use the resulting atlas to study a craniofacial disease; we show how we can obtain qualitative and quantitative results by contrasting a skull affected by a mandible deformation with the atlas.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, atlas, deformations, Algorithms, Anatomy Artistic, methods, Comparative Study, Craniofacial Abnormalities, pathology, Diagnosis Computer-Assisted, methods, Human, Medical Illustration, Skull, anatomy & histology}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/SubsolMedia1998.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Thirion98, AUTHOR = {J.-P. Thirion}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {243--260}, TITLE = {Image matching as a diffusion process: an analogy with Maxwell's demons}, VOLUME = {2}, YEAR = {1998}, ABSTRACT = {In this paper, we present the concept of diffusing models to perform image-to-image matching. Having two images to match, the main idea is to consider the objects boundaries in one image as semi-permeable membranes and to let the other image, considered as a deformable grid model, diffuse through these interfaces, by the action of effectors situated within the membranes. We illustrate this concept by an analogy with Maxwell's demons. We show that this concept relates to more traditional ones, based on attraction, with an intermediate step being optical flow techniques. We use the concept of diffusing models to derive three different non-rigid matching algorithms, one using all the intensity levels in the static image, one using only contour points, and a last one operating on already segmented images. Finally, we present results with synthesized deformations and real medical images, with applications to heart motion tracking and three-dimensional inter-patients matching.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, deformations, Algorithms, Animals, Brain, anatomy & histology, Computer Simulation, Diagnostic Imaging, methods, Dogs, Heart, anatomy & histology, Human, Image Processing Computer-Assisted, methods, Models Theoretical, Thermodynamics}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/thirion-media-1998.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{ayache-isrr98, OPTADDRESS = {}, AUTHOR = {Nicholas Ayache and Stephane Cotin and Hervé Delingette}, BOOKTITLE = {Robotics Research, the Eigth International Symposium}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {Y. Shirai and S. Hirose}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {311--316}, PUBLISHER = {Springer}, OPTSERIES = {}, TITLE = {Surgery Simulation with visual and haptic feedback}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {workshop, simulation}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Subsol98.2, OPTADDRESS = {}, AUTHOR = {G. Subsol}, BOOKTITLE = {Brain Warping}, CHAPTER = {13}, OPTEDITION = {}, EDITOR = {A. W. Toga}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {225-246}, PUBLISHER = {Academic Press}, OPTSERIES = {}, TITLE = {Crest Lines for Curve Based Warping}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{Thirion98b, OPTADDRESS = {}, AUTHOR = {J.-P. Thirion}, BOOKTITLE = {Brain Warping}, CHAPTER = {9}, OPTEDITION = {}, EDITOR = {A. W. Toga}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {143--155}, PUBLISHER = {Academic Press}, OPTSERIES = {}, TITLE = {Diffusing Models and Applications}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {1998}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{chauvel:frto:1997, AUTHOR = {P Chauvel and W Sauerwein and N Bornfeld and W Friedrichs and N Brassart and A Courdi and J Herault and J P Pignol and P Y Bondiau and G Malandain}, JOURNAL = {Front Radiat Ther Oncol}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {133-42}, TITLE = {Clinical and technical requirements for proton treatment planning of ocular diseases. The SERAG (South Europe Radiotherapy Group)}, VOLUME = {30}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Comparative Study, Conjunctival Neoplasms, diagnosis, Dose-Response Relationship Radiation, Follow-Up Studies, Fundus Oculi, Human, Image Processing Computer-Assisted, Magnetic Resonance Imaging, Melanoma, diagnosis, Neoplasm Recurrence Local, diagnosis, Predictive Value of Tests, Protons, therapeutic use, Radiotherapy Planning Computer-Assisted, methods, Retrospective Studies, Tomography X-Ray Computed, Treatment Outcome, Uveal Neoplasms, diagnosis}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cotin_rbm, AUTHOR = {S. Cotin and H. Delingette and N. Ayache and J.M. Clement and J. Marescaux and M. Nord}, JOURNAL = {Revue Européenne de Technologie Biomédicale (RBM)}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {5}, PAGES = {167--172}, TITLE = {Simulation Active de Chirurgie Endoscopique}, VOLUME = {19}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, simulation}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{declerck:tmi:97, AUTHOR = {J. Declerck and J. Feldmar and M.L. Goris and F. Betting}, JOURNAL = {IEEE Transactions on Medical Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {6}, PAGES = {727--737}, TITLE = {Automatic registration and alignment on a template of cardiac stress & rest SPECT reoriented images}, VOLUME = {16}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, deformations}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ree97, AUTHOR = {H. Delingette}, JOURNAL = {Revue de la société des électriciens et des électroniciens (REE)}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {43--45}, TITLE = {Réalité virtuelle et médecine}, VOLUME = {8}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, simulation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/ree.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Feldmar4, AUTHOR = {J. Feldmar and N. Ayache and F. Betting}, JOURNAL = {Journal of Computer Vision and Image Understanding}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {3}, PAGES = {403-424}, TITLE = {3D-2D projective registration of free-form curves and surfaces}, VOLUME = {65}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/FeldmarCVIU1997.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{feldmar-al97, AUTHOR = {J. Feldmar and J. Declerck and G. Malandain and N. Ayache}, JOURNAL = {Computer Vision and Image Understanding}, MONTH = {May}, OPTNOTE = {}, NUMBER = {2}, PAGES = {193--206}, TITLE = {Extension of the ICP Algorithm to Non-Rigid Intensity-Based Registration of 3D Volumes}, VOLUME = {66}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, deformations}, URL = {https://www-sop.inria.fr/asclepios/Publications/Misc/CVIU-97-1.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{guimond97.3, AUTHOR = {Alexandre Guimond and Gérard Subsol and Jean-Philippe Thirion}, JOURNAL = {International Journal of Pattern Recognition and Artificial Intelligence}, MONTH = {December}, OPTNOTE = {}, NUMBER = {8}, PAGES = {1345--1366}, TITLE = {Automatic MRI Database Exploration and Applications}, VOLUME = {11}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://www.lirmm.fr/~subsol/IJPRAI.1297.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{GueziecPennecAyache:CSE:97, AUTHOR = {André Guéziec and Xavier Pennec and Nicholas Ayache}, JOURNAL = {IEEE Computational Science and Engineering}, MONTH = {Oct-Dec}, NOTE = {special issue on Geometric Hashing}, NUMBER = {4}, PAGES = {29--41}, TITLE = {Medical Image Registration using Geometric Hashing}, VOLUME = {4}, YEAR = {1997}, OPTABSTRACT = {}, DOI = {10.1109/99.641607}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Gueziec.Pennec.Ayache.CSE.GH.pdf}, URL-PUBLISHER = {http://computer.org/cse/cs1997/c4toc.htm}, OPTPMID = {}, POSTSCRIPT = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Gueziec.Pennec.Ayache.CSE.GH.a4.ps.gz}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615068}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{marescaux:banm:1997, AUTHOR = {J Marescaux and J M Clement and M Nord and Y Russier and V Tassetti and D Mutter and S Cotin and N Ayache}, JOURNAL = {Bull Acad Natl Med}, MONTH = {November}, OPTNOTE = {}, NUMBER = {8}, PAGES = {1609-21}, TITLE = {[A new concept in digestive surgery: the computer assisted surgical procedure, from virtual reality to telemanipulation]}, VOLUME = {181}, YEAR = {1997}, ABSTRACT = {Surgical simulation increasingly appears to be an essential aspect of tomorrow's surgery. The development of a hepatic surgery simulator is an advanced concept calling for a new writing system which will transform the medical world: virtual reality. Virtual reality extends the perception of our five senses by representing more than the real state of things by the means of computer sciences and robotics. It consists of three concepts: immersion, navigation and interaction. Three reasons have led us to develop this simulator: the first is to provide the surgeon with a comprehensive visualisation of the organ. The second reason is to allow for planning and surgical simulation that could be compared with the detailed flight-plan for a commercial jet pilot. The third lies in the fact that virtual reality is an integrated part of the concept of computer assisted surgical procedure. The project consists of a sophisticated simulator which has to include five requirements: visual fidelity, interactivity, physical properties, physiological properties, sensory input and output. In this report we will describe how to get a realistic 3D model of the liver from bi-dimensional 2D medical images for anatomical and surgical training. The introduction of a tumor and the consequent planning and virtual resection is also described, as are force feedback and real-time interaction.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {review, survey, review, survey, Computer Simulation, Digestive System Surgical Procedures, English Abstract, Human, Telemedicine, User-Computer Interface}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Pennec:IJCV:97, AUTHOR = {Xavier Pennec and Jean-Philippe Thirion}, JOURNAL = {International Journal of Computer Vision}, MONTH = {December}, OPTNOTE = {}, NUMBER = {3}, PAGES = {203--229}, TITLE = {A Framework for Uncertainty and Validation of 3D Registration Methods based on Points and Frames}, VOLUME = {25}, YEAR = {1997}, OPTABSTRACT = {}, DOI = {10.1023/A:1007976002485}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, uncertainty, statistics, validation}, URL = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.IJCV97.pdf}, URL-PUBLISHER = {http://www.springerlink.com/openurl.asp?genre=article&issn=0920-5691&volume=25&issue=3&spage=203}, OPTPMID = {}, POSTSCRIPT = {https://www-sop.inria.fr/asclepios/Publications/Xavier.Pennec/Pennec.IJCV97.ps.gz}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615070}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{picard:sfn:1997, AUTHOR = {L Picard and E Maurincomme and M Soderman and J Feldmar and R Anxionnat and L Launay and K Ericson and G Malandain and S Bracard and E Kerrien and O Flodmark and N Ayache}, JOURNAL = {Stereotact Funct Neurosurg}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1-4 Pt 1}, PAGES = {117-20}, TITLE = {X-ray angiography in stereotactic conditions: techniques and interest for interventional neuroradiology}, VOLUME = {68}, YEAR = {1997}, ABSTRACT = {This paper reports work in progress on X-ray angiography acquired under stereotactic conditions. The objective is to be able to match multimodality images (typically {MRI} and X-ray) without a stereotactic frame but with stereotactic precision. We have identified potential problems and have studied them in detail. We conclude that, although the overall application is feasible, much work remains to be done on the estimation of the X-ray system conic projection and on automatic matching based on vascular structures.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Angiography Digital Subtraction, methods, Carotid Arteries, anatomy & histology, Cerebral Angiography, methods, Human, Image Enhancement, Magnetic Resonance Angiography, methods, Radiology Interventional, methods, Stereotaxic Techniques}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Quatrehomme97b, AUTHOR = {G. Quatrehomme and S. Cotin and G. Subsol and H. Delingette and Y. Garidel and G. Grévin and M. Fidrich}, JOURNAL = {Journal of Forensic Sciences}, MONTH = {July}, OPTNOTE = {}, NUMBER = {4}, PAGES = {649-652}, TITLE = {A Fully Three-Dimensional Method for Facial Reconstruction Based on Deformable Models}, VOLUME = {42}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, medical}, URL = {http://www.lirmm.fr/~subsol/JFS.0797.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Subsol97, AUTHOR = {G. Subsol and N. Roberts and M. Doran and J.-Ph. Thirion}, JOURNAL = {Magnetic Resonance Imaging}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {8}, PAGES = {917-927}, TITLE = {Automatic Analysis of Cerebral Atrophy}, VOLUME = {15}, YEAR = {1997}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {http://www.lirmm.fr/~subsol/MRI.1297.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{West.etal:JCAT:97, AUTHOR = {J. West and J. M. Fitzpatrick and M. Y. Wang and B. M. Dawant and Maurer, Jr., C. R. and R. M. Kessler and R. J. Maciunas and C. Barillot and D. Lemoine and A. Collignon and F. Maes and P. Suetens and D. Vandermeulen and van den Elsen, P. A. and S. Napel and T. S. Sumanaweera and B. Harkness and P. F. Hemler and D. L. G. Hill and D. J. Hawkes and C. Studholme and J. B. A. Maintz and M. A. Viergever and G. Malandain and X. Pennec and M. E. Noz and Maguire, Jr., G. Q. and M. Pollack and C. A. Pelizzari and R. A. Robb and D. Hanson and R. P. Woods}, JOURNAL = {Journal of Computer Assisted Tomography}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, PAGES = {554--566}, TITLE = {Comparison and evaluation of retrospective intermodality brain image registration techniques}, VOLUME = {21}, YEAR = {1997}, ABSTRACT = {PURPOSE: The primary objective of this study is to perform a blinded evaluation of a group of retrospective image registration techniques using as a gold standard a prospective, marker-based registration method. To ensure blindedness, all retrospective registrations were performed by participants who had no knowledge of the gold standard results until after their results had been submitted. A secondary goal of the project is to evaluate the importance of correcting geometrical distortion in MR images by comparing the retrospective registration error in the rectified images, i.e., those that have had the distortion correction applied, with that of the same images before rectification. METHOD: Image volumes of three modalities (CT, MR, and PET) were obtained from patients undergoing neurosurgery at Vanderbilt University Medical Center on whom bone-implanted fiducial markers were mounted. These volumes had all traces of the markers removed and were provided via the Internet to project collaborators outside Vanderbilt, who then performed retrospective registrations on the volumes, calculating transformations from CT to MR and/ or from PET to MR. These investigators communicated their transformations again via the Internet to Vanderbilt, where the accuracy of each registration was evaluated. In this evaluation, the accuracy is measured at multiple volumes of interest (VOIs), i.e., areas in the brain that would commonly be areas of neurological interest. A VOI is defined in the MR image and its centroid c is determined. Then, the prospective registration is used to obtain the corresponding point c' in CT or PET. To this point, the retrospective registration is then applied, producing c" in MR. Statistics are gathered on the target registration error (TRE), which is the distance between the original point c and its corresponding point c". RESULTS: This article presents statistics on the TRE calculated for each registration technique in this study and provides a brief description of each technique and an estimate of both preparation and execution time needed to perform the registration. CONCLUSION: Our results indicate that retrospective techniques have the potential to produce satisfactory results much of the time, but that visual inspection is necessary to guard against large errors.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {registration, matching, multimodal, validation, uncertainty}, URL = {http://www.jcat.org/pt/re/jcat/abstract.00004728-199707000-00007.htm}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.inria.fr/inria-00615072}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache:neuroimage:1996, AUTHOR = {N Ayache}, JOURNAL = {NeuroImage}, MONTH = {December}, OPTNOTE = {}, NUMBER = {3 Pt 2}, OPTPAGES = {}, TITLE = {Analyzing 3D images of the brain}, VOLUME = {4}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Brain Mapping, Computer Graphics, Human, Image Processing Computer-Assisted, Robotics, Software, User-Computer Interface}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/AyacheNeuroIm1996.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{BCA96e, AUTHOR = {E. Bardinet and L.D. Cohen and N. Ayache}, JOURNAL = {Medical Image Analysis}, OPTMONTH = {}, NOTE = {also INRIA Research Report RR-2797, INRIA Sophia-Antipolis, February 1996}, NUMBER = {2}, OPTPAGES = {}, TITLE = {Tracking and motion analysis of the left ventricle with deformable superquadrics}, VOLUME = {1}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Misc/Bardinet_MedIA_1996.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{cotin:shti:1996, AUTHOR = {S Cotin and H Delingette and M Bro-Nielsen and N Ayache and J M Clement and V Tassetti and J Marescaux}, JOURNAL = {Stud Health Technol Inform}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {139-51}, TITLE = {Geometric and physical representations for a simulator of hepatic surgery}, VOLUME = {29}, YEAR = {1996}, ABSTRACT = {Despite the large interest in simulators of minimally invasive surgery, it is still unclear to what extent simulators can achieve the task of training medical students in surgical procedures. The answer to that question is certainly linked to the realism of displays and force-feedback systems and to the level of interaction provided by the computer system. In this paper, we describe the virtual environment for anatomical and surgical training on the liver, currently under construction at INRIA. We specifically address the problems of geometric representation and physical modeling and their impact on the two aforementioned problems: realism and real-time interaction.}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Computer Simulation, Education Medical, Human, Image Processing Computer-Assisted, Liver, anatomy & histology, Support Non-U.S. Gov't, User-Computer Interface}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Feldmar-ayache-ijcv96, AUTHOR = {J. Feldmar and N. Ayache}, JOURNAL = {International Journal of Computer Vision}, MONTH = {May}, OPTNOTE = {}, NUMBER = {2}, PAGES = {99--120}, TITLE = {Rigid, Affine and Locally Affine Registration of Free-Form Surfaces}, VOLUME = {18}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {matching, registration, deformations}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/FeldmarIJCV1996.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Nastar-Ayache, AUTHOR = {C. Nastar and N. Ayache}, JOURNAL = {IEEE Transactions on Pattern Analysis and Machine Intelligence}, MONTH = {novembre}, OPTNOTE = {}, NUMBER = {11}, PAGES = {1067--1079}, TITLE = {Frequency-based Non-rigid Motion Analysis: Application to Four Dimensional Medical Images}, VOLUME = {18}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/NastarTPAMI1996.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Roberts96, AUTHOR = {N. Roberts and G. Subsol and J.-Ph. Thirion and M. Puddephat and G. W. Whitehouse}, JOURNAL = {Magnetic Resonance Materials in Physics, Biology and Medicine}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {62-63}, TITLE = {Automatic Analysis of Deformation of the Cerebral Ventricles}, VOLUME = {4}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Subsol97.2, AUTHOR = {G. Subsol and J.-Ph. Thirion and N. Ayache}, JOURNAL = {Traitement du signal}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {6}, PAGES = {651-674}, TITLE = {Construction automatique d'atlas anatomiques morphométriques à partir d'images médicales tridimensionnelles : application à un atlas du crâne}, VOLUME = {13}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gerard.Subsol/TS.0096.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Thirion96d, AUTHOR = {J.-P. Thirion}, JOURNAL = {International Journal of Computer Vision}, MONTH = {May}, OPTNOTE = {}, NUMBER = {2}, PAGES = {121--137}, TITLE = {New Feature Points based on Geometric Invariants for 3D Image Registration}, VOLUME = {18}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Thirion96e, AUTHOR = {J.-P. Thirion}, JOURNAL = {International Journal of Computer Vision}, MONTH = {August}, OPTNOTE = {}, NUMBER = {2}, PAGES = {115--128}, TITLE = {The Extremal Mesh and the Understanding of 3D Surfaces}, VOLUME = {19}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{OFTA96, OPTADDRESS = {}, AUTHOR = {H. Delingette and G. Subsol}, BOOKTITLE = {Nouvelles Interfaces Homme-Machine}, OPTCHAPTER = {}, OPTEDITION = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {18}, OPTPAGES = {}, PUBLISHER = {Observatoire Français des Techniques Avancées}, SERIES = {ARAGO}, TITLE = {L'Image dans la Réalité Virtuelle}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {1996}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {chapter-book, simulation}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache-ivc, AUTHOR = {N. Ayache}, JOURNAL = {Image and Vision Computing}, MONTH = {May}, OPTNOTE = {}, NUMBER = {4}, PAGES = {295--313}, TITLE = {Medical Computer Vision, Virtual Reality and Robotics}, VOLUME = {13}, YEAR = {1995}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/AyacheIVC1995.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bertrand-al95, AUTHOR = {G. Bertrand and G. Malandain}, JOURNAL = {Graphical Models and Image Processing}, MONTH = {November}, OPTNOTE = {}, NUMBER = {6}, PAGES = {537--538}, TITLE = {A note on ``Building skeleton models via 3D medial surface-axis thinning algorithms''}, VOLUME = {57}, YEAR = {1995}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{delingette_pami_95, AUTHOR = {M. Hébert and H. Delingette and K. Ikeuchi}, JOURNAL = {IEEE Transactions on Pattern Analysis and Machine Intelligence}, MONTH = {June}, OPTNOTE = {}, NUMBER = {7}, OPTPAGES = {}, TITLE = {Shape Representation and Image Segmentation Using Deformable Surfaces}, VOLUME = {17}, YEAR = {1995}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, recognition}, URL = {https://www-sop.inria.fr/asclepios/Publications/Herve.Delingette/pami.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{monga-benayoun95, AUTHOR = {O. Monga and S. Benayoun}, JOURNAL = {Computer Vision and Image Understanding}, MONTH = {March}, NOTE = {aussi rapport de recherche INRIA numero 1599, Février 1992}, NUMBER = {2}, PAGES = {171-189}, TITLE = {Using partial derivatives of 3D images to extract typical surface features}, VOLUME = {61}, YEAR = {1995}, ABSTRACT = {Three-dimensional edge detection in voxel images is used to locate points corresponding to surfaces of 3D structures. The next stage is to characterize the local geometry of these surfaces in order to extract points or lines which may be used by registration and tracking procedures. Typically one must calculate second-order differential characteristics of the surfaces such as the maximum, mean, and Gaussian curvature. The classical approach is to use local surface fitting, thereby confronting the problem of establishing links between 3D edge detection and local surface approximation. To avoid this problem, we propose to compute the curvatures at locations designated as edge points using directly the partial derivatives of the image. By assuming that the surface is defined locally by a isointensity contour (i.e., the 3D gradient at an edge point corresponds to the normal to the surface), one can calculate directly the curvatures and characterize the local curvature extrema (ridge points) from the first, second, and third derivatives of the gray level function. These partial derivatives can be computed using the operators of the edge detection. In the more general case where the contours are not isocontours (i.e., the gradient at an edge point only approximates the normal to the surface), the only differential invariants of the image are in R^4. This leads us to treat the 3D image as a hypersurface (a three-dimensional manifold) in R^4. We give the relationships between the curvatures of the hypersurface and the curvatures of the surface defined by edge points. The maximum curvature at a point on the hypersurface depends on the second partial derivatives of the 3D image. We note that it may be more efficient to smooth the data in R^4. Moreover, this approach could also be used to detect corners of vertices. We present experimental results obtained using real data (X ray scanner data) and applying these two methods. As an example of the stability, we extract ridge lines in two 3D X ray scanner data of a skull taken in different positions.}, DOI = {doi:10.1006/cviu.1995.1014}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Thirion95c, AUTHOR = {J.-P. Thirion and A Gourdon}, JOURNAL = {Journal of Computer Vision and Image Understanding}, MONTH = {March}, OPTNOTE = {}, NUMBER = {2}, PAGES = {190--202}, TITLE = {Computing the Differential Characteristics of Isointensity Surfaces}, VOLUME = {61}, YEAR = {1995}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{ayache_inbook, OPTADDRESS = {}, AUTHOR = {N. Ayache and P. Cinquin and I. Cohen and L. D. Cohen and I. L. Herlin and F. Leitner and O. Monga}, BOOKTITLE = {Computer Integrated Surgery}, OPTCHAPTER = {}, OPTEDITION = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {MIT-Press}, OPTSERIES = {}, TITLE = {Segmentation of Complex 3D medical Objects: a challenge and a requirement for computer assisted surgery planning and performing}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {1995}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {http://hal.inria.fr/inria-00532673/en/}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{bertrand-al94, AUTHOR = {G. Bertrand and G. Malandain}, JOURNAL = {Pattern Recognition Letters}, MONTH = {February}, OPTNOTE = {}, NUMBER = {2}, PAGES = {169--175}, TITLE = {A new characterization of three-dimensional simple points}, VOLUME = {15}, YEAR = {1994}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Gueziec&Ayache:IJCV, AUTHOR = {A. Guéziec and N. Ayache}, JOURNAL = {International Journal of Computer Vision}, MONTH = {January}, OPTNOTE = {}, NUMBER = {1}, PAGES = {79--104}, TITLE = {Smoothing and Matching of 3-D Space Curves}, VOLUME = {12}, YEAR = {1994}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/GueziecIJCV1994.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{malandain-al95b, AUTHOR = {G. Malandain and S. Fernández-Vidal and J.-M. Rocchisani}, JOURNAL = {Traitement du signal}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {6}, PAGES = {541--558}, TITLE = {Mise en correspondance d'objets 3D par une approche mécanique : application aux images médicales multimodales}, VOLUME = {11}, YEAR = {1994}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Thirion94d, AUTHOR = {J.-P. Thirion}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {June}, OPTNOTE = {}, NUMBER = {2}, PAGES = {322--328}, TITLE = {Direct Extraction of Boundaries from Computed Tomography Scans}, VOLUME = {13}, YEAR = {1994}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Cohen_CohenPAMI92, AUTHOR = {Laurent D. Cohen and Isaac Cohen}, JOURNAL = {IEEE Transactions on Pattern Analysis and Machine Intelligence}, MONTH = {November}, OPTNOTE = {}, NUMBER = {11}, OPTPAGES = {}, TITLE = {Finite Element Methods for active contour models and balloons from 2-D to 3-D}, VOLUME = {15}, YEAR = {1993}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{malandain-al93, AUTHOR = {G. Malandain and G. Bertrand and N. Ayache}, JOURNAL = {International Journal of Computer Vision}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {183--197}, TITLE = {Topological segmentation of discrete surfaces}, VOLUME = {10}, YEAR = {1993}, OPTABSTRACT = {}, DOI = {10.1007/BF01420736}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Gregoire.Malandain/malandain-ijcv-1993.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{ayache93a, OPTADDRESS = {}, AUTHOR = {N. Ayache}, BOOKTITLE = {6th Int. Symposium on Robotics Research}, OPTCHAPTER = {}, OPTEDITION = {}, EDITOR = {T. Kanade and R. Paul}, OPTMONTH = {}, NOTE = {Available as INRIA Research Report 2050.}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {MIT-Press}, OPTSERIES = {}, TITLE = {Computer Vision Applied to 3D Medical Images: Results, Trends and Future Challenges}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {1993}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/Ayache1993.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{NastarSPRINGER, OPTADDRESS = {}, AUTHOR = {Chahab Nastar and Nicholas Ayache}, BOOKTITLE = {Geometric Reasoning - from Perception to Action}, OPTCHAPTER = {}, OPTEDITION = {}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {Springer}, SERIES = {Lecture notes in computer science}, TITLE = {A New Physically Based Model for Efficient Tracking and Analysis of Deformations}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {1993}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Cohen_Cohen_Ayache:cvgip92, AUTHOR = {I. Cohen and L.D. Cohen and N. Ayache}, JOURNAL = {Computer Vision, Graphics, and Image Processing: Image Understanding}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {2}, PAGES = {242--263}, TITLE = {Using deformable surfaces to segment 3-D images and infer differential structures}, VOLUME = {56}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/CohenCVGIPIU1992.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{delingette_ivc_92, AUTHOR = {H. Delingette and M. Hébert and K. Ikeuchi}, JOURNAL = {Image and Vision Computing}, MONTH = {April}, OPTNOTE = {}, NUMBER = {3}, PAGES = {132--144}, TITLE = {Shape Representation and Image Segmentation using deformable surfaces}, VOLUME = {10}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {journal, reconstruction}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Gueziec&Ayache:TS, AUTHOR = {A. Guéziec and N. Ayache}, JOURNAL = {Traitement du signal}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {6}, OPTPAGES = {}, TITLE = {Lissage et reconnaissance de courbes gauches bruitées}, VOLUME = {9}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{tsi-herlin-92, AUTHOR = {I.L. Herlin and N. Ayache}, JOURNAL = {Technique et Science Informatiques}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {4}, OPTPAGES = {}, TITLE = {Extraction de traits caractéristiques dans des séquences d'images échocardiographiques}, VOLUME = {11}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{herlin-ayache-ivc92, AUTHOR = {Isabelle L. Herlin and Nicholas Ayache}, JOURNAL = {Image and Vision Computing}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {10}, PAGES = {673--682}, TITLE = {Feature Extraction and analysis methods for sequences of ultrasound images}, VOLUME = {10}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/HerlinIVC1992.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{monga-ayache-sander91, AUTHOR = {O. Monga and N. Ayache and P. Sander}, JOURNAL = {Image and Vision Computing}, MONTH = {Août}, OPTNOTE = {}, NUMBER = {6}, PAGES = {673--682}, TITLE = {Using uncertainty to link edge detection and local surface modelling}, VOLUME = {10}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/MongaIVC1992.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{monga-sander-ayache-ivc92, AUTHOR = {Olivier Monga and Peter Sander and Nicholas Ayache}, JOURNAL = {Image and Vision Computing}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {6}, PAGES = {403--417}, TITLE = {From Voxel to Intrinsic Surface Features}, VOLUME = {10}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/MongaIVC1992b.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Thirion91a, AUTHOR = {J.-Ph. Thirion}, JOURNAL = {Computer Vision, Graphics and Image Processing}, MONTH = {January}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {82--90}, TITLE = {Realistic 3D Simulation of Shapes and Shadows for Image Processing}, OPTVOLUME = {}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{Thirion91b, AUTHOR = {J.-Ph. Thirion}, JOURNAL = {IEEE Transactions on Medical Imaging}, MONTH = {March}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {102--110}, TITLE = {Segmentation of Tomographic Data without Image Reconstruction}, OPTVOLUME = {}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INCOLLECTION{na-isaac-isa, OPTADDRESS = {}, AUTHOR = {N. Ayache and I. Cohen and I.L. Herlin}, BOOKTITLE = {Active Vision, Andrew Blake and Alan Yuille}, CHAPTER = {17}, OPTEDITION = {}, OPTEDITOR = {}, OPTMONTH = {}, NOTE = {In press}, OPTNUMBER = {}, OPTPAGES = {}, PUBLISHER = {MIT Press}, OPTSERIES = {}, TITLE = {Medical Image Tracking}, OPTTYPE = {}, OPTVOLUME = {}, YEAR = {1992}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/AyacheInBook1992.pdf}, OPTURL-PUBLISHER = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache-lustman-pami91, AUTHOR = {Nicholas Ayache and Francis Lustman}, JOURNAL = {IEEE Transactions on Pattern Analysis and Machine Intelligence}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, OPTPAGES = {}, TITLE = {Trinocular Stereovision for Robotics}, VOLUME = {13}, YEAR = {1991}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/AyachePAMI1991.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{monga-al91b, AUTHOR = {O. Monga and R. Deriche and G. Malandain and J.-P. Cocquerez}, JOURNAL = {Image and Vision Computing}, MONTH = {August}, OPTNOTE = {}, NUMBER = {4}, PAGES = {203--214}, TITLE = {Recursive filtering and edge tracking: two primary tools for 3-D edge detection}, VOLUME = {9}, YEAR = {1991}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{rocchisani90, AUTHOR = {J.-M Rocchisani and O. Monga and R. Deriche and G. Malandain}, JOURNAL = {European Journal of Nuclear Medicine}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {419}, TITLE = {Automatic multidimensional segmentation of nuclear medicine images using fast recursive filters}, VOLUME = {16}, YEAR = {1990}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache-faugeras-ijra89, AUTHOR = {Nicholas Ayache and Olivier Faugeras}, JOURNAL = {International Journal of Robotics and Automation}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {6}, PAGES = {804--819}, TITLE = {Maintaining Representations of the Environment of a Mobile Robot}, VOLUME = {5}, YEAR = {1989}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/AyacheIJRA1989.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache-faugeras-ijrr88, AUTHOR = {Nicholas Ayache and Olivier Faugeras}, JOURNAL = {International Journal of Robotics Research}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {6}, PAGES = {45--65}, TITLE = {Building, registrating and fusing noisy visual maps}, VOLUME = {7}, YEAR = {1988}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/AyacheIJRR1988.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache-faverjon-IJCV87, AUTHOR = {Nicholas Ayache and Bernard Faverjon}, JOURNAL = {International Journal of Computer Vision}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, PAGES = {107--131}, TITLE = {Efficient Registration of stereo images by matching graph descriptions of edge segments}, OPTVOLUME = {}, YEAR = {1987}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/AyacheIJCV1987.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @ARTICLE{ayache-pami86, AUTHOR = {Nicholas Ayache and Olivier Faugeras}, JOURNAL = {IEEE Transactions on Pattern Analysis and Machine Intelligence}, OPTMONTH = {}, OPTNOTE = {}, NUMBER = {1}, PAGES = {44-54}, TITLE = {HYPER: a new approach for the recognition and positioning of 2D objects}, VOLUME = {8}, YEAR = {1986}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, URL = {https://www-sop.inria.fr/asclepios/Publications/Nicholas.Ayache/Ayache-Faugeras-Pami86.pdf}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-EDITORIAL-BOARD = {}, X-INTERNATIONAL-AUDIENCE = {}, X-PAYS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, OPTURL-HAL = {}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{akhoj:hal-03842847, ADDRESS = {Levi Ski Resort (Lapland), Finland}, AUTHOR = {Morten Akhoj and Xavier Pennec and Stefan Sommer}, BOOKTITLE = {Scandinavian Conference on Image Analysis 2023}, OPTEDITOR = {}, MONTH = {April}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Tangent phylogenetic PCA}, OPTVOLUME = {}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03842847/file/2208.12730.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03842847}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{calissano:hal-04162647, ADDRESS = {Saint-Malo (France), France}, AUTHOR = {Anna Calissano and Elodie Maignant and Xavier Pennec}, BOOKTITLE = {GSI 2023: Geometric Science of Information}, OPTEDITOR = {}, MONTH = {August}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {366-374}, PUBLISHER = {Springer Nature Switzerland}, SERIES = {Lecture Notes in Computer Science}, TITLE = {Towards Quotient Barycentric Subspaces}, VOLUME = {14071}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1007/978-3-031-38271-0_36}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Discrete Group, Quotient Space, Barycentric Subspace Analysis, Graph Space, Object Oriented Data Analysis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-04162647/file/Towards_Quotient_Barycentric_Subspaces.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-04162647}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{cedilnik:hal-04111276, ADDRESS = {Lyon, France}, AUTHOR = {Nicolas Cedilnik and Jean-Marc Peyrat}, BOOKTITLE = {FIMH 2023 - 12th International Conference On Functional Imaging And Modeling Of The Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, PUBLISHER = {Springer}, SERIES = {Lecture Notes in Computer Science}, TITLE = {Weighted tissue thickness}, OPTVOLUME = {}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Thickness, Thickness measurements, Medical image analysis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-04111276/file/article.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-04111276}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{dadoun:hal-03984528, ADDRESS = {Cartagena de Indias, Colombia}, AUTHOR = {Hind Dadoun and Hervé Delingette and Anne-Laure Rousseau and de Kerviler, Eric and Nicholas Ayache}, BOOKTITLE = {IEEE ISBI 2023 - International Symposium on Biomedical Imaging}, OPTEDITOR = {}, MONTH = {April}, OPTNOTE = {}, OPTNUMBER = {}, ORGANIZATION = {IEEE}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Joint representation learning from french radiological reports and ultrasound images}, OPTVOLUME = {}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = { multimodal learning deep clustering natural language processing ultrasound examinations kidneys, multimodal learning, deep clustering, natural language processing, ultrasound examinations, kidneys}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03984528/file/HIND_DADOUN_ISBI_2023.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03984528}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{fang:hal-04189905, ADDRESS = {Vancouver, Canada}, AUTHOR = {Zhijie Fang and Hervé Delingette and Nicholas Ayache}, BOOKTITLE = {MICCAI ASMUS 2023 - 4th International Workshop of Advances in Simplifying Medical UltraSound - a workshop held in conjunction with MICCAI 2023, the 26th International Conference on Medical Image Computing and Computer Assisted Intervention}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Anatomical Landmark Detection for Initializing US and MR Image Registration}, OPTVOLUME = {}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Landmark detection, Image-guided intervention, Convolutional neural network and Prostate cancer}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-04189905/file/Fang-ASMUS-camera-ready-version-18Aug2023.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-04189905}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{maignant:hal-04122754, ADDRESS = {Saint-Malo, (France), France}, AUTHOR = {Elodie Maignant and Alain Trouvé and Xavier Pennec}, BOOKTITLE = {GSI 2023: Geometric Science of Information}, OPTEDITOR = {}, MONTH = {August}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {12-20}, PUBLISHER = {Springer Nature Switzerland}, SERIES = {Lecture Notes in Computer Science}, TITLE = {Riemannian Locally Linear Embedding with Application to Kendall Shape Spaces}, VOLUME = {14071}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1007/978-3-031-38271-0_2}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Locally Linear Embedding, Optimisation on Quotient Manifolds, Shape Spaces}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-04122754/file/Riemannian_Locally_Linear_Embedding_with_Application_to_Kendall_Shape_Spaces.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-04122754}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{sreedhar:hal-04209622, ADDRESS = {Vancouver, Canada}, AUTHOR = {Hari Sreedhar and Guillaume P R Lajoinie and Charles Raffaelli and Hervé Delingette}, BOOKTITLE = {DALI 2023 - Data Augmentation, Labelling, and Imperfections / MICCAI Workshop 2023}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, SERIES = {MICCAI Workshop on Data Augmentation, Labelling, and Imperfections, DALI 2023, held in conjunction with MICCAI 2023 Proceedings}, TITLE = {Active Learning Strategies on a Real-World Thyroid Ultrasound Dataset}, OPTVOLUME = {}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Thyroid cancer, Active learning, Ultrasound imaging}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-04209622/file/manuscript.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-04209622}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{szwagier:hal-04100534, ADDRESS = {Saint-Malo, (France), France}, AUTHOR = {Tom Szwagier and Xavier Pennec}, BOOKTITLE = {GSI 2023: Geometric Science of Information}, OPTEDITOR = {}, MONTH = {August}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {375-383}, PUBLISHER = {Springer Nature Switzerland}, SERIES = {Lecture Notes in Computer Science}, TITLE = {Rethinking the Riemannian Logarithm on Flag Manifolds as an Orthogonal Alignment Problem}, VOLUME = {14071}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1007/978-3-031-38271-0_37}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Flag manifolds, Riemannian logarithm, Orthogonal alignment, Procrustes analysis, Flag manifolds Riemannian logarithm Orthogonal alignment Procrustes analysis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-04100534/file/GSI-119.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-04100534}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{thanwerdas:hal-04229093, ADDRESS = {Saint Malo, France, France}, AUTHOR = {Yann Thanwerdas and Xavier Pennec}, BOOKTITLE = {GSI 2023 - International Conference on Geometric Science of Information}, OPTEDITOR = {}, MONTH = {August}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {384-391}, PUBLISHER = {Springer Nature Switzerland}, SERIES = {Geometric Science of Information: 6th International Conference, GSI 2023, St. Malo, France, August 30 -- September 1, 2023, Proceedings, Part I}, TITLE = {Characterization of Invariant Inner Products}, VOLUME = {LNCS-14071}, YEAR = {2023}, OPTABSTRACT = {}, DOI = {10.1007/978-3-031-38271-0_38}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = { Invariant inner product Invariant Riemannian metric Group action Representation theory, Invariant inner product, Invariant Riemannian metric, Group action, Representation theory}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-04229093/file/GSI-105.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-04229093}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{yang:hal-04109721, ADDRESS = {Lyon, France}, AUTHOR = {Yingyu Yang and Maxime Sermesant}, BOOKTITLE = {FIMH 2023 - The 12th International Conference on Functional Imaging and Modeling of The Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Unsupervised Polyaffine Transformation Learning for Echocardiography Motion Estimation}, OPTVOLUME = {}, YEAR = {2023}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = { Motion Estimation Echocardiography Polyaffine Transformation, Motion Estimation, Echocardiography, Polyaffine Transformation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-04109721/file/Unsupervised_Polyaffine_Motion_Model_for_Echocardiography_Analysis__final_-2.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-04109721}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{fraboni:hal-03500307, ADDRESS = {Vienna, Austria}, AUTHOR = {Yann Fraboni and Richard Vidal and Laetitia Kameni and Marco Lorenzi}, BOOKTITLE = {International Workshop on Trustworthy Federated Learning in Conjunction with IJCAI 2022 (FL-IJCAI'22)}, OPTEDITOR = {}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {A General Theory for Client Sampling in Federated Learning}, OPTVOLUME = {}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03500307v2/file/A_General_Theory_for_Client_Sampling_in_Federated_Learning.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03500307}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{hamzaoui:hal-03775967, ADDRESS = {Singapore, Singapore}, AUTHOR = {Dimitri Hamzaoui and Sarah Montagne and Raphaele Renard-Penna and Nicholas Ayache and Hervé Delingette}, BOOKTITLE = {MICCAI Workshop UNSURE 2022: Uncertainty for Safe Utilization of Machine Learning in Medical Imaging}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {MOrphologically-aware Jaccard-based ITerative Optimization (MOJITO) for Consensus Segmentation}, OPTVOLUME = {}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Consensus Algorithm, Segmentation 2D et 3D, Jaccard distance, STAPLE}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03775967/file/JaccardConsensus__Anonymized_%285%29.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03775967}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{kashtanova:hal-03687596, ADDRESS = {Zurich, Switzerland}, AUTHOR = {Victoriya Kashtanova and Ibrahim Ayed and Andony Arrieula and Mark Potse and Patrick Gallinari and Maxime Sermesant}, BOOKTITLE = {MIDL 2022 - Medical Imaging with Deep Learning}, OPTEDITOR = {}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Deep Learning for Model Correction in Cardiac Electrophysiological Imaging}, OPTVOLUME = {}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Electrophysiology, Deep learning, Simulations, Physics-based learning}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03687596/file/Kashtanova_MIDL22_Camera_Ready.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03687596}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{kashtanova:hal-03894974, ADDRESS = {Singapore, Singapore}, AUTHOR = {Victoriya Kashtanova and Mihaela Pop and Ibrahim Ayed and Patrick Gallinari and Maxime Sermesant}, BOOKTITLE = {STACOM 2022 - 13th Workhop on Statistical Atlases and Computational Modelling of the Heart}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {APHYN-EP: Physics-based deep learning framework to learn and forecast cardiac electrophysiology dynamics}, OPTVOLUME = {}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = { Physics-based learning Deep Learning Electrophysiology Simulations, Physics-based learning, Deep Learning, Electrophysiology, Simulations}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03894974/file/STACOM2022_Workshop-ready.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03894974}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{li:hal-03775940, ADDRESS = {Singapore, Singapore}, AUTHOR = {Huiyu Li and Nicholas Ayache and Hervé Delingette}, BOOKTITLE = {DeCaF 2022 - International Workshop on Distributed, Collaborative, and Federated Learning}, EDITOR = {Springer Nature}, MONTH = {September}, NOTE = {Best Paper Award}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, SERIES = {Distributed, Collaborative, and Federated Learning, and Affordable AI and Healthcare for Resource Diverse Global Health Third MICCAI Workshop, DeCaF 2022, and Second MICCAI Workshop, FAIR 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18 and 22, 2022, Proceedings}, TITLE = {Data Stealing Attack on Medical Images: Is it Safe to Export Networks from Data Lakes?}, VOLUME = {LNCS - 13573}, YEAR = {2022}, OPTABSTRACT = {}, DOI = {10.1007/978-3-031-18523-6_3}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Data Stealing Attack, Privacy, Medical Images}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03775940/file/Paper.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03775940}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{ly:hal-03829609, ADDRESS = {Singapore, Singapore}, AUTHOR = {Buntheng Ly and Sonny Finsterbach and Marta Nuñez-Garcia and Pierre Jaïs and Damien Garreau and Hubert Cochet and Maxime Sermesant}, BOOKTITLE = {STACOM 2022 - 13th Workhop on Statistical Atlases and Computational Modelling of the Heart}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Interpretable Prediction of Post-Infarct Ventricular Arrhythmia using Graph Convolutional Network}, OPTVOLUME = {}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Graph Neural Network, Ventricular Arrhythmia, Interpretable AI, Cardiac CT}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03829609/file/STACOM2022_Graph_Learning_Paper_camready.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03829609}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{taiello:hal-03697446, ADDRESS = {Singapore, Singapore}, AUTHOR = {Riccardo Taiello and Melek Önen and Olivier Humbert and Marco Lorenzi}, BOOKTITLE = {MICCAI 2022 - Medical Image Computing and Computer Assisted Intervention}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Privacy Preserving Image Registration}, OPTVOLUME = {}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Image Registration, Privacy enhancing technologies, Trustworthiness}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03697446v3/file/Privacy_Preserving_Image_Registration.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03697446}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{terrail:hal-03900026, ADDRESS = {New Orleans, United States}, AUTHOR = {Jean Ogier Du Terrail and Samy-Safwan Ayed and Edwige Cyffers and Felix Grimberg and Chaoyang He and Regis Loeb and Paul Mangold and Tanguy Marchand and Othmane Marfoq and Erum Mushtaq and Boris Muzellec and Constantin Philippenko and Santiago Silva and Maria Telenczuk and Shadi Albarqouni and Salman Avestimehr and Aurélien Bellet and Aymeric Dieuleveut and Martin Jaggi and Sai Praneeth Karimireddy and Marco Lorenzi and Giovanni Neglia and Marc Tommasi and Mathieu Andreux}, BOOKTITLE = {NeurIPS 2022 - Thirty-sixth Conference on Neural Information Processing Systems}, OPTEDITOR = {}, MONTH = {November}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, SERIES = {Proceedings of NeurIPS}, TITLE = {FLamby: Datasets and Benchmarks for Cross-Silo Federated Learning in Realistic Healthcare Settings}, OPTVOLUME = {}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03900026}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{wang:hal-03792276, ADDRESS = {Singapore, Singapore}, AUTHOR = {Zihao Wang and Yingyu Yang and Maxime Sermesant and Hervé Delingette}, BOOKTITLE = {STACOM 2022 - 13th workshop on Statistical Atlases and Computational Models of the Heart}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Unsupervised Echocardiography Registration through Patch-based MLPs and Transformers}, OPTVOLUME = {}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Unsupervised Registration, MLP, Transformer, Echocardiography}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03792276/file/REG_STACOM2022.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03792276}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{yang:hal-03888791, ADDRESS = {Singapore, Singapore}, AUTHOR = {Yingyu Yang and Marie Rocher and Pamela Moceri and Maxime Sermesant}, BOOKTITLE = {STACOM 2022 - 13th workshop on Statistical Atlases and Computational Models of the Heart}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Explainable Electrocardiogram Analysis with Wave Decomposition: Application to Myocardial Infarction Detection}, OPTVOLUME = {}, YEAR = {2022}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {ECG analysis, Reconstruction, Explainable ML, Myocardial infarction classification}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03888791/file/ECG_STACOM2022.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03888791}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{audelan:hal-03538729, ADDRESS = {Virtual, United Kingdom}, AUTHOR = {Benoît Audelan and Lopez Stéphanie and Pierre Fillard and Yann Diascorn and Bernard Padovani and Hervé Delingette}, BOOKTITLE = {ERS 2021 - European Respiratory Society International Congress}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Validation of lung nodule detection a year before diagnosis in NLST dataset based on a deep learning system}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1183/13993003.congress-2021.OA4317}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03538729}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{balelli:hal-03152886, ADDRESS = {Bornholm, Denmark}, AUTHOR = {Irene Balelli and Santiago Silva and Marco Lorenzi}, BOOKTITLE = {International Conference on Information Processing in Medical Imaging}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, SERIES = {Information processing in medical imaging: proceedings of the 27th International Conference, IPMI 2021}, TITLE = {A Probabilistic Framework for Modeling the Variability Across Federated Datasets of Heterogeneous Multi-View Observations}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Federated Learning, Hierarchical Generative Model, Heterogeneity}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03152886v2/file/Balelli_IPMI2021_CameraReady.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03152886}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{burgosfernandez:hal-03513023, ADDRESS = {Online, Spain}, AUTHOR = {Francisco J Burgos-Fernández and Buntheng Ly and Fernando Dìaz-Doutón and Meritxell Vilaseca and Jaume Pujol and Maxime Sermesant}, BOOKTITLE = {Libro de Resúmenes RNO2021}, OPTEDITOR = {}, MONTH = {November}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Automatic classification of multispectral eye fundus images using deep learning}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03513023/file/RNO2021_FranciscoJBurgos.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03513023}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{dadoun:hal-03127809, ADDRESS = {Nice, France}, AUTHOR = {Hind Dadoun and Hervé Delingette and Anne-Laure Rousseau and de Kerviler, Eric and Nicholas Ayache}, BOOKTITLE = {ISBI 2021 - 18th IEEE International Symposium on Biomedical Imaging}, OPTEDITOR = {}, MONTH = {April}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Combining Bayesian and Deep Learning Methods for the Delineation of the Fan in Ultrasound Images}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1109/ISBI48211.2021.9434112}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Ultrasound imaging, Deep Learning, Ultrasound fan area detection, pre-processing}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03127809/file/root.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03127809}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{desrues:hal-03369345, ADDRESS = {Stanford, CA, United States}, AUTHOR = {Gaëtan Desrues and Delphine Feuerstein and Thierry Legay and Serge Cazeau and Maxime Sermesant}, BOOKTITLE = {FIMH 2021 - 11th International Conference on Functional Imaging and Modeling of the Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Personal-by-design: a 3D Electromechanical Model of the Heart Tailored for Personalisation}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-78710-3_43}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Personalisation, Digital twin, Cardiac electromechanical model, Electrophysiology, Electrocardiogram}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03369345/file/fimh_2021.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03369345}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{difolco:hal-03203378, ADDRESS = {Stanford, United States}, AUTHOR = {Di Folco, Maxime and Nicolas Guigui and Patrick Clarysse and Pamela Moceri and Nicolas Duchateau}, BOOKTITLE = {FIMH 2021 - 11th International Conference on Functional Imaging and Modeling of the Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {223--231}, PUBLISHER = {Springer}, SERIES = {Lectune notes in computer science (LNCS)}, TITLE = {Investigation of the impact of normalization on the study of interactions between myocardial shape and deformation}, VOLUME = {12738}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-78710-3_22}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac imaging, manifold learning, myocardial strain, heart shape}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03203378/file/Difolco_FIMH_2021.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03203378}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{fraboni:hal-03232421, ADDRESS = {online, United States}, AUTHOR = {Yann Fraboni and Richard Vidal and Laetitia Kameni and Marco Lorenzi}, BOOKTITLE = {ICML 2021 - 38th International Conference on Machine Learning}, OPTEDITOR = {}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Clustered Sampling: Low-Variance and Improved Representativity for Clients Selection in Federated Learning}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Client sampling, federated learning, sampling variance, data representativity}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03232421/file/ICML_clustered_sampling.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03232421}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{fraboni:hal-03123638, ADDRESS = {San Diego, United States}, AUTHOR = {Yann Fraboni and Richard Vidal and Marco Lorenzi}, BOOKTITLE = {AISTATS 2021 - 24th International Conference on Artificial Intelligence and Statistics}, OPTEDITOR = {}, MONTH = {April}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Free-rider Attacks on Model Aggregation in Federated Learning}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03123638/file/free_riding_AISTATS_vf.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03123638}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{guigui:hal-03160677, ADDRESS = {Paris, France}, AUTHOR = {Nicolas Guigui and Elodie Maignant and Alain Trouvé and Xavier Pennec}, BOOKTITLE = {GSI 2021 - 5th conference on Geometric Science of Information}, OPTEDITOR = {}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {103-110}, PUBLISHER = {Springer}, SERIES = {Lecture Notes in Computer Science}, TITLE = {Parallel Transport on Kendall Shape Spaces}, VOLUME = {12829}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-80209-7_12}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03160677/file/parallel_transport_shape.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03160677}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{guigui:hal-03142196, ADDRESS = {Nice, France}, AUTHOR = {Nicolas Guigui and Pamela Moceri and Maxime Sermesant and Xavier Pennec}, BOOKTITLE = {ISBI 2021 - 18th IEEE International Symposium on Biomedical Imaging}, OPTEDITOR = {}, MONTH = {April}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {pp. 1394-1397}, PUBLISHER = {IEEE}, SERIES = {IEEE 18th International Symposium on Biomedical Imaging (ISBI), 2021}, TITLE = {Cardiac Motion Modeling with Parallel Transport and Shape Splines}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1109/ISBI48211.2021.9433887}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {LDDMM, Cardiac Modelling, Shape Analysis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03142196/file/root.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03142196}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{guigui:hal-03154318, ADDRESS = {Paris, France}, AUTHOR = {Nicolas Guigui and Xavier Pennec}, BOOKTITLE = {GSI 2021 - 5th conference on Geometric Science of Information}, OPTEDITOR = {}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {119-126}, PUBLISHER = {Springer, Cham}, SERIES = {Lecture Notes in Computer Science}, TITLE = {A reduced parallel transport equation on Lie Groups with a left-invariant metric}, VOLUME = {12829}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-80209-7_14}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03154318v2/file/parallel_transport_lie_group.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03154318}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{hamzaoui:hal-03826791, ADDRESS = {Strasbourg, France}, AUTHOR = {Mariem Hamzaoui and Théodore Soulier and Arya Yazdan-Panah and Schmidt- Mengin, Marius and Olivier Colliot and Nicholas Ayache and Bruno Stankoff}, BOOKTITLE = {MICCAI 2021 MSSEG2 - 24th International Conference on Medical Image Computing and Computer Assisted Intervention - Challenge on multiple sclerosis new lesions segmentation challenge using a data management and processing infrastructure - MICCAI-MSSEG-2}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Intensity based Regions Of Interest (ROIs) preselection followed by Convolutional Neuronal Network (CNN) based segmentation for new lesions detection in Multiple Sclerosis}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Classical image processing, CNNs, Hybrid approach}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03826791/file/maryem_MSSEG2.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03826791}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{harrison:hal-03375871, ADDRESS = {Strasbourg, France}, AUTHOR = {Josquin Harrison and Marco Lorenzi and Benoit Legghe and Xavier Iriart and Hubert Cochet and Maxime Sermesant}, BOOKTITLE = {MICCAI 2021 - 24th International Conference on Medical Image Computing and Computer Assisted Intervention}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, SERIES = {LNCS - Lecture Notes in Computer Science}, TITLE = {Phase-independent Latent Representation for Cardiac Shape Analysis}, VOLUME = {12906}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-87231-1_52}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Shape Analysis, Atrial Fibrillation, Thrombosis, Graph Representation, Latent Space Model, Multi-Task Learning, Meta-Learning}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03375871/file/paper1929.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03375871}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{jousse:hal-03500440, ADDRESS = {JODHPUR, India}, AUTHOR = {Florent Jousse and Xavier Pennec and Hervé Delingette and Matilde Gonzalez}, BOOKTITLE = {FG 2021 - IEEE International Conference on Automatic Face and Gesture Recognition}, OPTEDITOR = {}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Geodesic squared exponential kernel for non-rigid shape registration}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1109/FG52635.2021.9666997}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03500440/file/sample_FG2021.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03500440}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{kashtanova:hal-03369201, ADDRESS = {Stanford, CA (virtual), United States}, AUTHOR = {Victoriya Kashtanova and Ibrahim Ayed and Nicolas Cedilnik and Patrick Gallinari and Maxime Sermesant}, BOOKTITLE = {FIMH 2021 - 11th International Conference on Functional Imaging and Modeling of the Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {482-492}, PUBLISHER = {Springer International Publishing}, SERIES = {Lecture Notes in Computer Science}, TITLE = {EP-Net 2.0: Out-of-Domain Generalisation for Deep Learning Models of Cardiac Electrophysiology}, VOLUME = {12738}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-78710-3_46}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Electrophysiology, Deep learning, Simulation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03369201/file/FIMH_2021_final.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03369201}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{ly:hal-03378951, ADDRESS = {Stanford, United States}, AUTHOR = {Buntheng Ly and Sonny Finsterbach and Marta Nuñez-Garcia and Hubert Cochet and Maxime Sermesant}, BOOKTITLE = {FIMH 2021 - 11th International Conference on Functional Imaging and Modeling of the Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {461-470}, PUBLISHER = {Springer International Publishing}, SERIES = {Lecture Notes in Computer Science}, TITLE = {Scar-Related Ventricular Arrhythmia Prediction from Imaging Using Explainable Deep Learning}, VOLUME = {12738}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-78710-3_44}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Conditional-VAE, Sustained Ventricular Arrhythmia, CTcardiac imaging, Myocardium thickness, Image Classification}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03378951/file/scar_related_va_pred__fimh2021_buntheng%20%281%29.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03378951}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{schmidtmengin:hal-03826787, ADDRESS = {Strasbourg, France}, AUTHOR = {Marius Schmidt-Mengin and Arya Yazdan-Panah and Théodore Soulier and Mariem Hamzaoui and Nicholas Ayache and Olivier Colliot}, BOOKTITLE = {MICCAI-MSSEG-2 - 25th International Conference on Medical Image Computing and Computer Assisted Intervention - challenge on multiple sclerosis new lesions segmentation challenge using a data management and processing infrastructure}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Segmentation of new multiple sclerosis lesions on FLAIR MRI using online hard example mining}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Segmentation, Deep learning, Hard example mining, Multiple Sclerosis, MRI}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03826787/file/marius_MSSEG2.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03826787}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{thanwerdas:hal-03157992, ADDRESS = {Paris, France}, AUTHOR = {Yann Thanwerdas and Xavier Pennec}, BOOKTITLE = {GSI 2021 - 5th conference on Geometric Science of Information}, OPTEDITOR = {}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {93-102}, PUBLISHER = {Springer, Cham}, SERIES = {Proceedings of Geometric Science of Information}, TITLE = {Geodesics and Curvature of the Quotient-Affine Metrics on Full-Rank Correlation Matrices}, VOLUME = {12829}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-80209-7_11}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Correlation matrices, SPD matrices, Quotient manifold, Quotient-affine metric, Riemannian geometry}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03157992v3/file/main.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03157992}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{tourniaire:hal-03342963, ADDRESS = {Strasbourg, France}, AUTHOR = {Paul Tourniaire and Marius Ilie and Paul Hofman and Nicholas Ayache and Hervé Delingette}, BOOKTITLE = {MICCAI 2021 - Workshop on Computational Pathology}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {216-226}, PUBLISHER = {PMLR}, SERIES = {Proceedings of Machine Learning Research}, TITLE = {Attention-based Multiple Instance Learning with Mixed Supervision on the Camelyon16 Dataset}, VOLUME = {156}, YEAR = {2021}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Attention Mechanism, Mixed Supervision, Histopathology}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03342963/file/Compay_hal.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03342963}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{wang:hal-03024759, ADDRESS = {strasbourg, France}, AUTHOR = {Zihao Wang and Clair Vandersteen and Charles Raffaelli and Nicolas Guevara and François Patou and Hervé Delingette}, BOOKTITLE = {MICCAI 2021 - Workshop on Data Augmentation, Labeling, and Imperfections}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {163-172}, PUBLISHER = {Springer}, SERIES = {Lecture Notes in Computer Science (LNCS)}, TITLE = {One-shot Learning Landmarks Detection}, VOLUME = {13003}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-88210-5_15}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03024759v2/file/Camera_Ready__MICCAI2021_Workshop_Landmarks_Detection.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03024759}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{yang:hal-03371358, ADDRESS = {Stanford, United States}, AUTHOR = {Yingyu Yang and Maxime Sermesant}, BOOKTITLE = {FIMH 2021 - 11th International Conference on Functional Imaging and Modeling of the Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Shape Constraints in Deep Learning for Robust 2D Echocardiography Analysis}, OPTVOLUME = {}, YEAR = {2021}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-78710-3_3}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Segmentation, Deep Learning, Deformation, Echocardiography}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03371358/file/FIMH_2021_YingyuYANG.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03371358}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{audelan:hal-02934590, ADDRESS = {Lima/ Virtuel, Peru}, AUTHOR = {Benoît Audelan and Dimitri Hamzaoui and Sarah Montagne and Raphaële Renard-Penna and Hervé Delingette}, BOOKTITLE = {MICCAI 2020 - 23rd International Conference on Medical Image Computing and Computer Assisted Intervention}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Robust Fusion of Probability Maps}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02934590/file/paper2268.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02934590}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{banus:hal-02952576, ADDRESS = {Lima / Virtual, Peru}, AUTHOR = {Jaume Banus and Maxime Sermesant and Oscar Camara and Marco Lorenzi}, BOOKTITLE = {MICCAI 2020 - 23th International Conference on Medical Image Computing and Computer Assisted Intervention}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {478-486}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Joint data imputation and mechanistic modelling for simulating heart-brain interactions in incomplete datasets}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-59725-2_46}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Gaussian Process, Variational Inference, Lumped model, Missing features, 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= {}, OPTISSN = {}, KEYWORDS = {Non-Euclidean statistics, wrapped distributions, exponential map, moment matching estimator}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-03154401/file/WrappedModelsOnManifoldsChevallierGuigui.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03154401}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{hamzaoui:hal-03126932, ADDRESS = {Paris, France}, AUTHOR = {Dimitri Hamzaoui and Sarah Montagne and Pierre Mozer and Raphaële Renard-Penna and Hervé Delingette}, BOOKTITLE = {Congrès Francais d'Urologie}, OPTEDITOR = {}, MONTH = {November}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {696-697}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Segmentation automatique de la prostate à l'aide d'un réseau de neurones profond}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.1016/j.purol.2020.07.010}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-03126932}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{miolane:hal-02908006, ADDRESS = {Austin, Texas, United States}, AUTHOR = {Nina Miolane and Nicolas Guigui and Hadi Zaatiti and Christian Shewmake and Hatem Hajri and Daniel Brooks and Le Brigant, Alice and Johan Mathe and Benjamin Hou and Yann Thanwerdas and Stefan Heyder and Olivier Peltre and Niklas Koep and Yann Cabanes and Thomas Gerald and Paul Chauchat and Bernhard Kainz and Claire Donnat and Susan Holmes and Xavier Pennec}, BOOKTITLE = {SciPy 2020 - 19th Python in Science Conference}, EDITOR = {Meghann Agarwal and Chris Calloway and Dillon Niederhut and David Shupe}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {48-57}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Introduction to Geometric Learning in Python with Geomstats}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, DOI = {10.25080/Majora-342d178e-007}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Index Terms-differential geometry, statistics, manifold, machine learning}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02908006/file/geomstats.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02908006}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{moceri:hal-02445303, ADDRESS = {Paris, France}, AUTHOR = {Pamela Moceri and Nicolas Duchateau and N Dursent and Xavier Iriart and Sébastien Hascoet and D Baudouy and Emile Ferrari and Maxime Sermesant}, BOOKTITLE = {JESFC 2020 - 30es Journées Européennes de la Société Française de Cardiologie}, OPTEDITOR = {}, MONTH = {January}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {163-4}, OPTPUBLISHER = {}, SERIES = {Archives of Cardiovascular Diseases Supplements}, TITLE = {Right ventricular remodelling in CHD-PAH patients using 3D speckle tracking}, VOLUME = {12}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02445303}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{nunezgarcia:hal-02961506, ADDRESS = {Lima, Peru}, AUTHOR = {Marta Nuñez-Garcia and Nicolas Cedilnik and Shuman Jia and Hubert Cochet and Marco Lorenzi and Maxime Sermesant}, BOOKTITLE = {STACOM 2020 - 11th International Workshop on Statistical Atlases and Computational Models of the Heart}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {p.108--116}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Estimation of imaging biomarker's progression in post-infarct patients using cross-sectional data}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Post-infarct cardiac remodeling, Ventricular arrhythmia, Cross-sectional data, Disease progression modeling}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02961506v2/file/scar_maturation_stacom2020_cr.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02961506}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{nunezgarcia:hal-02961500, ADDRESS = {Lima, Peru}, AUTHOR = {Marta Nuñez-Garcia and Nicolas Cedilnik and Shuman Jia and Maxime Sermesant and Hubert Cochet}, BOOKTITLE = {STACOM 2020 - 11th International Workshop on Statistical Atlases and Computational Models of the Heart}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {p.108--116}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Automatic multiplanar CT reformatting from trans-axial into left ventricle short-axis view}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Automatic image reformatting, Short-axis view, Deep learning segmentation, Cardiac imaging}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02961500/file/SAX_reformat_Stacom2020_cr.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02961500}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{orlhac:inserm-02952453, ADDRESS = {Virtual Meeting, United States}, AUTHOR = {Fanny Orlhac and Thibaut Cassou-Mounat and Jean-Yves Pierga and Marie Luporsi and Christophe Nioche and Charles Bouveyron and Nicholas Ayache and Nina Jehanno and Alain Livartowski and Irene Buvat}, BOOKTITLE = {SNMMI Annual Meeting}, OPTEDITOR = {}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Can we identify ''twin patients'' to predict response to neoadjuvant chemotherapy in breast cancer?}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inserm.hal.science/inserm-02952453/file/Abstract_twin_HAL.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inserm.hal.science/inserm-02952453}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{orlhac:inserm-02952445, ADDRESS = {Virtual Meeting, Austria}, AUTHOR = {Fanny Orlhac and Anne-Capucine Rollet and Irène Buvat and Jacques Darcourt and Véronique Bourg and Christophe Nioche and Charles Bouveyron and Nicholas Ayache and Olivier Humbert}, BOOKTITLE = {EANM Annual Meeting - Annual Meeting of the European Association of Nuclear Medicine}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Identifying a reliable radiomic signature from scarce data: illustration for 18F-FDOPA PET images in glioblastoma patients}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inserm.hal.science/inserm-02952445/file/Absrract_Gliomes_HAL.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inserm.hal.science/inserm-02952445}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{silva:hal-02966789, ADDRESS = {Lima/ Virtuel, Peru}, AUTHOR = {Santiago Silva and Andre Altmann and Boris Gutman and Marco Lorenzi}, BOOKTITLE = {MICCAI 2020 - 23rd International Conference on Medical Image Computing and Computer Assisted Intervention - 1st Workshop on Distributed and Collaborative Learning}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {201-210}, PUBLISHER = {Springer}, SERIES = {DCL: MICCAI Workshop on Distributed and Collaborative Learning}, TITLE = {Fed-BioMed: A general open-source frontendframework for federated learning in healthcare}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {federated learning, healthcare, medical imaging}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02966789/file/DCL_MICCAI_2020_Paper-1%281%29.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02966789}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{wang:hal-02570026, ADDRESS = {Montréal, Canada}, AUTHOR = {Zihao Wang and Clair Vandersteen and Thomas Demarcy and Dan Gnansia and Charles Raffaelli and Nicolas Guevara and Hervé Delingette}, BOOKTITLE = {MIDL 2020 - Medical Imaging with Deep Learning}, OPTEDITOR = {}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {A Deep Learning based Fast Signed Distance Map Generation}, OPTVOLUME = {}, YEAR = {2020}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02570026/file/MIDL2020__A_Deep_Learning_based_Fast_Signed_Distance_MapGeneration%20%281%29.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02570026}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{antelmi:hal-02154181, ADDRESS = {Long Beach, United States}, AUTHOR = {Luigi Antelmi and Nicholas Ayache and Philippe Robert and Marco Lorenzi}, BOOKTITLE = {ICML 2019 - 36th International Conference on Machine Learning}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Sparse Multi-Channel Variational Autoencoder for the Joint Analysis of Heterogeneous Data}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02154181/file/antelmi19a.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02154181}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{audelan:hal-02265131, ADDRESS = {Shenzhen, China}, AUTHOR = {Benoît Audelan and Hervé Delingette}, BOOKTITLE = {MICCAI 2019 - 22nd International Conference on Medical Image Computing and Computer Assisted Intervention}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Unsupervised Quality Control of Image Segmentation based on Bayesian Learning}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Image segmentation, Bayesian learning, Quality control}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02265131/file/paper2106.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02265131}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{ayache:hal-02063234, ADDRESS = {Fukuoka, Japan}, AUTHOR = {Nicholas Ayache}, BOOKTITLE = {5th International Symposium on Multidiscplinary Computational Anatomy}, OPTEDITOR = {}, MONTH = {March}, NOTE = {Talk given by M. Nicholas Ayache at the MCA 2019}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {AI and Healthcare: towards a Digital Twin?}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02063234/file/Ayache_invited_talk_MCA_FY2019.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02063234}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{ayed:hal-02106618, ADDRESS = {Bordeaux, France}, AUTHOR = {Ibrahim Ayed and Nicolas Cedilnik and Patrick Gallinari and Maxime Sermesant}, BOOKTITLE = {FIMH 2019 - 10th International Conference on Functional Imaging of the Hearth}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {55-63}, PUBLISHER = {Springer}, OPTSERIES = {}, TITLE = {EP-Net: Learning Cardiac Electrophysiology Models for Physiology-based Constraints in Data-Driven Predictions}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02106618/file/LearningModel_FIMH_2019%285%29.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02106618}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{bacoyannis:hal-02108958, ADDRESS = {Bordeaux, France}, AUTHOR = {Tania Bacoyannis and Julian Krebs and Nicolas Cedilnik and Hubert Cochet and Maxime Sermesant}, BOOKTITLE = {FIMH 2019 - 10th International Conference on Functional Imaging and Modeling of the Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {20-28}, PUBLISHER = {Springer}, OPTSERIES = {}, TITLE = {Deep Learning Formulation of ECGI for Data-driven Integration of Spatiotemporal Correlations and Imaging Information}, VOLUME = {LNCS 11504}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {ECGI, Deep learning, Generative Model, Simulation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02108958v2/file/tania_fimh.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02108958}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{banus:hal-02361466, ADDRESS = {Bordeaux, France}, AUTHOR = {Jaume Banus and Marco Lorenzi and Oscar Camara and Maxime Sermesant}, BOOKTITLE = {FIMH 2019 - 10th International Conference on Functional Imaging and Modeling of the Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {285-293}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Large Scale Cardiovascular Model Personalisation for Mechanistic Analysis of Heart and Brain Interactions}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-21949-9_31}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02361466/file/FIMH_Jaume_2019_Updated.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02361466}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{cedilnik:hal-02106609, ADDRESS = {Bordeaux, France}, AUTHOR = {Nicolas Cedilnik and Josselin Duchateau and Frederic Sacher and Pierre Jaïs and Hubert Cochet and Maxime Sermesant}, BOOKTITLE = {FIMH 2019 - 10th International Conference on Functional Imaging and Modeling of the Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {325-333}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Fully Automated Electrophysiological Model Personalisation Framework from CT Imaging}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Model Personalisation, Segmentation, Deep learning, Imaging}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02106609/file/cedilnik_fimh2019%287%29.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02106609}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{cedilnik:hal-02181793, ADDRESS = {Lisbonne, Portugal}, AUTHOR = {Nicolas Cedilnik and Shuman Jia and Pierre Jaïs and Hubert Cochet and Maxime Sermesant}, BOOKTITLE = {EHRA 2019 - European Heart Rhythm Association}, OPTEDITOR = {}, MONTH = {March}, OPTNOTE = {}, NUMBER = {2}, OPTORGANIZATION = {}, PAGES = {720-739}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Automatic non-invasive substrate analysis from CT images in post-infarction VT}, VOLUME = {21}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1093/europace/euz105}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02181793}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{cedilnik:hal-02368288, ADDRESS = {Shenzen, China}, AUTHOR = {Nicolas Cedilnik and Maxime Sermesant}, BOOKTITLE = {STACOM 2019 - 10th Workshop on Statistical Atlases and Computational Modelling of the Heart}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Eikonal Model Personalisation using Invasive Data to Predict Cardiac Resynchronisation Therapy Electrophysiological Response}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Electrophysiology, Computer model, Personalisation, Cardiac resynchronisation therapy}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02368288/file/cedilnik_stacom2019.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02368288}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{desrues:hal-02429678, ADDRESS = {Shenzhen, China}, AUTHOR = {Gaëtan Desrues and Hervé Delingette and Maxime Sermesant}, BOOKTITLE = {STACOM 2019: Statistical Atlases and Computational Models of the Heart}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Towards Hyper-Reduction of Cardiac Models using Poly-Affine Deformation}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02429678/file/STACOM_FinalVersion.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02429678}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{garbarino:hal-02165021, ADDRESS = {Hong Kong, Hong Kong SAR China}, AUTHOR = {Sara Garbarino and Marco Lorenzi}, BOOKTITLE = {IPMI 2019 - International Conference on Information Processing in Medical Imaging}, OPTEDITOR = {}, MONTH = {June}, NOTE = {Bayesian non--parametric model, protein propagation, Alzheimer'sdisease, Gaussian process, dynamical systems, spatio--temporal model, disease progression modeling}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {57-69}, PUBLISHER = {springer}, SERIES = {Lecture Notes in Computer Science book series}, TITLE = {Modeling and inference of spatio-temporal protein dynamics across brain networks}, VOLUME = {11492}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02165021/file/IPMI_01-10-2018.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02165021}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{guigui:hal-02148832, ADDRESS = {Toulouse, France}, AUTHOR = {Nicolas Guigui and Shuman Jia and Maxime Sermesant and Xavier Pennec}, BOOKTITLE = {GSI 2019 - 4th conference on Geometric Science of Information}, OPTEDITOR = {}, MONTH = {August}, OPTNOTE = {}, OPTNUMBER = {}, ORGANIZATION = {F. Nielsen and F. Barbaresco}, PAGES = {759--768}, PUBLISHER = {Springer}, SERIES = {Proceedings of Geometric Science of Information}, TITLE = {Symmetric Algorithmic Components for Shape Analysis with Diffeomorphisms}, VOLUME = {Lecture Notes in Computer Science 11712}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-26980-7_79}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Symmetric Spaces, Parallel Transport, Shape Registration}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02148832/file/55-Guigui.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02148832}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{krebs:hal-02239318, ADDRESS = {Shenzhen, China}, AUTHOR = {Julian Krebs and Tommaso Mansi and Nicholas Ayache and Hervé Delingette}, BOOKTITLE = {STACOM 2019 - 10th Workshop on Statistical Atlases and Computational Modelling of the Heart}, OPTEDITOR = {}, MONTH = {October}, NOTE = {Probabilistic Motion Model, Motion Tracking, Temporal Super-Resolution, Diffeomorphic Registration, Temporal Variational Autoencoder}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Probabilistic Motion Modeling from Medical Image Sequences: Application to Cardiac Cine-MRI}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02239318v2/file/stacom_2019_final.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02239318}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{lazaridis:hal-03374557, ADDRESS = {Shenzhen, China}, AUTHOR = {Georgios Lazaridis and Marco Lorenzi and Sebastien Ourselin and David Garway-Heath}, BOOKTITLE = {MICAI 2019 - 22nd International Conference on Medical Image Computing and Computer-Assisted Intervention}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {3-11}, PUBLISHER = {Springer International Publishing}, SERIES = {Medical Image Computing and Computer Assisted Intervention -- MICCAI 2019}, TITLE = {Enhancing OCT Signal by Fusion of GANs: Improving Statistical Power of Glaucoma Clinical Trials}, VOLUME = {LNCS. LNIP - 11764}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-32239-7_1}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03374557}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{legay:hal-03687459, ADDRESS = {Shenzhen, China}, AUTHOR = {Alexandre Legay and Thomas Tiennot and Jean-François Gelly and Maxime Sermesant and Jean Bulté}, BOOKTITLE = {STACOM 2019 - 10th International Workshop on Statistical Atlases and Computational Models of the Heart: Atrial Segmentation and LV Quantification Challenges}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {167-175}, PUBLISHER = {Springer International Publishing}, SERIES = {Statistical Atlases and Computational Models of the Heart. Multi-Sequence CMR Segmentation, CRT-EPiggy and LV Full Quantification Challenges}, TITLE = {End-to-end Cardiac Ultrasound Simulation for a Better Understanding of Image Quality}, VOLUME = {LNCS. LNIP - 12009}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-39074-7_18}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Ultrasound, Cardiac Modelling, Probe Design, Image Quality}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-03687459/file/Article_STACOM_authors_version.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03687459}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{ly:hal-02401643, ADDRESS = {Shenzhen, China}, AUTHOR = {Buntheng Ly and Hubert Cochet and Maxime Sermesant}, BOOKTITLE = {STACOM 2019 - 10th Workhop on Statistical Atlases and Computational Modelling of the Heart}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Style Data Augmentation for Robust Segmentation of Multi-Modality Cardiac MRI}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Deep Learning, Image segmentation, Cardiac Magnetic Resonance Imaging, Multi-modality, Late Gadolinium Enhanced}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02401643v3/file/stacom_ms_seg_hal.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02401643}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{marinescu:hal-03374569, ADDRESS = {Shenzhen, China}, AUTHOR = {R azvan Marinescu and Marco Lorenzi and Stefano Blumberg and Alexandra Young and Pere Planell-Morell and Neil Oxtoby and Arman Eshaghi and Keir Yong and Sebastian Crutch and Polina Golland and Daniel Alexander}, BOOKTITLE = {MICCAI 2019 - 22nd International Conference on Medical Image Computing and Computer-Assisted Intervention}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {860-868}, PUBLISHER = {Springer International Publishing}, SERIES = {Medical Image Computing and Computer Assisted Intervention -- MICCAI 2019}, TITLE = {Disease Knowledge Transfer Across Neurodegenerative Diseases}, VOLUME = {LNCS. LNIP - 11765}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-32245-8_95}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-03374569}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{moceri:hal-02161692, ADDRESS = {Paris, France}, AUTHOR = {Pamela Moceri and Nicolas Duchateau and Delphine Baudouy and Céline Sanfiorenzo and Fabien Squara and Emile Ferrari and Maxime Sermesant}, BOOKTITLE = {JE SFC 2019 - 29es Journées Européennes de la Société Française de Cardiologie}, OPTEDITOR = {}, MONTH = {January}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Incremental prognostic value of changes in 3D right ventricular function in pulmonary hypertension}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02161692}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{moceri:hal-02161694, ADDRESS = {Paris, France}, AUTHOR = {Pamela Moceri and Nicolas Duchateau and Delphine Baudouy and Fabien Squara and Emile Ferrari and Maxime Sermesant}, BOOKTITLE = {JE SFC 2019 - 29es Journées Européennes de la Société Française de Cardiologie}, OPTEDITOR = {}, MONTH = {January}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {3D right ventricular strain and shape in volume overload: comparative analysis of Tetralogy of Fallot and atrial septal defect patients}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02161694}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{thanwerdas:hal-02158525, ADDRESS = {Toulouse, France}, AUTHOR = {Yann Thanwerdas and Xavier Pennec}, BOOKTITLE = {GSI 2019 - 4th conference on Geometric Science of Information}, OPTEDITOR = {}, MONTH = {August}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {484--493}, PUBLISHER = {Springer}, SERIES = {Proceedings of Geometric Science of Information}, TITLE = {Exploration of Balanced Metrics on Symmetric Positive Definite Matrices}, VOLUME = {Lecture Notes in Computer Science 11712}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-26980-7_50}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Dually flat connections, SPD matrices, Information geometry}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02158525/file/Thanwerdas_GSI19_Balanced%20metrics.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02158525}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{thanwerdas:hal-02147020, ADDRESS = {Toulouse, France}, AUTHOR = {Yann Thanwerdas and Xavier Pennec}, BOOKTITLE = {GSI 2019 - 4th conference on Geometric Science of Information}, OPTEDITOR = {}, MONTH = {August}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {502-510}, PUBLISHER = {Springer}, SERIES = {Proceedings of Geometric Science of Information}, TITLE = {Is affine invariance well defined on SPD matrices? A principled continuum of metrics}, VOLUME = {Lecture Notes in Computer Science 11712}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-26980-7_52}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {SPD matrices, Riemannian symmetric spaces}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02147020/file/main.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02147020}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{wang:hal-02196557, ADDRESS = {Shenzhen, China}, AUTHOR = {Zihao Wang and Clair Vandersteen and Thomas Demarcy and Dan Gnansia and Charles Raffaelli and Nicolas Guevara and Hervé Delingette}, BOOKTITLE = {MICCAI 2019 - 22nd International Conference on Medical Image Computing and Computer Assisted Intervention}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {121-129}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Deep Learning based Metal Artifacts Reduction in post-operative Cochlear Implant CT Imaging}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Metal Artifacts Reduction, Generative adversarial networks}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02196557/file/paper2371.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02196557}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{wimmer:hal-02402475, ADDRESS = {Shenzhen, China}, AUTHOR = {Wilhelm Wimmer and Clair Vandersteen and Nicolas Guevara and Marco Caversaccio and Hervé Delingette}, BOOKTITLE = {MICCAI 2019 - 22nd International Conference on Medical Image Computing and Computer Assisted Intervention}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {3-10}, OPTPUBLISHER = {}, SERIES = {Medical Image Computing and Computer Assisted Intervention -- MICCAI 2019. MICCAI 2019. Lecture Notes in Computer Science}, TITLE = {Robust Cochlear Modiolar Axis Detection in CT}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-32254-0_1}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Approximate maximum like-lihood, Natural growth, Kinematic surface recognition}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02402475}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{yang:hal-02382941, ADDRESS = {Shenzhen, China}, AUTHOR = {Yingyu Yang and Stephane Gillon and Jaume Banus and Pamela Moceri and Maxime Sermesant}, BOOKTITLE = {STACOM 2019 - 10th Workshop on Statistical Atlases and Computational Modelling of the Heart}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Non-Invasive Pressure Estimation in Patients with Pulmonary Arterial Hypertension: Data-driven or Model-based?}, OPTVOLUME = {}, YEAR = {2019}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Cardiac modelling, Machine learning, Pulmonary hypertension}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02382941/file/stacom_2019.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02382941}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{abinader:hal-01882450, ADDRESS = {Granada, Spain}, AUTHOR = {Abi Nader, Clement and Nicholas Ayache and Philippe Robert and Marco Lorenzi}, BOOKTITLE = {Machine Learning in Clinical Neuroimaging (MLCN) workshop}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Alzheimer's Disease Modelling and Staging through Independent Gaussian Process Analysis of Spatio-Temporal Brain Changes}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Alzheimer's Disease, Disease Progression Modelling, Gaussian Process}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01882450/file/MLCN_2018_no_appendix.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01882450}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{antelmi:hal-02397737, ADDRESS = {Granada, Spain}, AUTHOR = {Luigi Antelmi and Nicholas Ayache and Philippe Robert and Marco Lorenzi}, BOOKTITLE = {Understanding and Interpreting Machine Learning in Medical Image Computing Applications}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {15-23}, OPTPUBLISHER = {}, SERIES = {LNCS}, TITLE = {Multi-Channel Stochastic Variational Inference for the Joint Analysis of Heterogeneous Biomedical Data in Alzheimer's Disease}, VOLUME = {11038}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-02397737v2/file/mcvae.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-02397737}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{chakraborty:hal-02024010, ADDRESS = {Kobe, Japan}, AUTHOR = {Bidisha Chakraborty and Sophie Giffard-Roisin and Martino Alessandrini and Brecht Heyde and M Sermesant and Jan d'Hooge}, BOOKTITLE = {IUS 2018 - IEEE International Ultrasonics Symposium}, OPTEDITOR = {}, MONTH = {October}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {1-9}, PUBLISHER = {IEEE}, OPTSERIES = {}, TITLE = {Estimation of the Spatial Resolution of a 2D Strain Estimator Using Synthetic Cardiac Images}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-02024010/file/IUS_Proceedings_bidisha_2018.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02024010}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{jia:hal-01860285, ADDRESS = {Granada, Spain}, AUTHOR = {Shuman Jia and Antoine Despinasse and Zihao Wang and Hervé Delingette and Xavier Pennec and Pierre Jaïs and Hubert Cochet and Maxime Sermesant}, BOOKTITLE = {STACOM: Statistical Atlases and Computational Models of the Heart. Atrial Segmentation and LV Quantification Challenges}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {221-229}, OPTPUBLISHER = {}, SERIES = {LNCS}, TITLE = {Automatically Segmenting the Left Atrium from Cardiac Images Using Successive 3D U-Nets and a Contour Loss}, VOLUME = {11395}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-12029-0_24}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {distance map, ensemble prediction, loss function, contour loss, left atrium, deep learning, segmentation, 3D U-Net}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01860285v4/file/Segmenting_STACOM_Cameraready-2.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01860285}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{jia:hal-01860274, ADDRESS = {Granada, Spain}, AUTHOR = {Shuman Jia and Nicolas Duchateau and Pamela Moceri and Maxime Sermesant and Xavier Pennec}, BOOKTITLE = {Shape in Medical Imaging. ShapeMI 2018.}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {116-124}, PUBLISHER = {Springer}, SERIES = {LNCS}, TITLE = {Parallel Transport of Surface Deformations from Pole Ladder to Symmetrical Extension}, VOLUME = {11167}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-04747-4_11}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01860274/file/Paper.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01860274}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{krebs:hal-01845688, ADDRESS = {Granada, Spain}, AUTHOR = {Julian Krebs and Tommaso Mansi and Boris Mailhé and Nicholas Ayache and Hervé Delingette}, BOOKTITLE = {Deep Learning in Medical Image Analysis (MICCAI workshop)}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Unsupervised Probabilistic Deformation Modeling for Robust Diffeomorphic Registration}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Image registration, Deep learning, Medical imaging analysis}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01845688/file/32_dlmia18.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01845688}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{lorenzi:hal-01843006, ADDRESS = {Stockholm, Sweden}, AUTHOR = {Marco Lorenzi and Maurizio Filippone}, BOOKTITLE = {ICML 2018 - The 35th International Conference on Machine Learning}, OPTEDITOR = {}, MONTH = {July}, NOTE = {13 pages}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {3233-3242}, OPTPUBLISHER = {}, SERIES = {PMLR - Proceedings of Machine Learning Research}, TITLE = {Constraining the Dynamics of Deep Probabilistic Models}, VOLUME = {80}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {machine learning, dynamical systems, gradient matching, gaussian process}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01843006}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{moceri:hal-01994488, ADDRESS = {Munich, Germany}, AUTHOR = {Pamela Moceri and Nicolas Duchateau and D Baudouy and C Sanfiorenzo and F Squara and E. Ferrari and M Sermesant}, BOOKTITLE = {ESC congress}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Incremental prognostic value of changes in 3D right ventricular function in pulmonary hypertension}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01994488}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{moceri:hal-01994486, ADDRESS = {Munich, Germany}, AUTHOR = {Pamela Moceri and Nicolas Duchateau and Delphine Baudouy and Fabien Squara and Emile Ferrari and M Sermesant}, BOOKTITLE = {ESC congress}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Volume overload impact on 3D right ventricular shape and strain: comparative analysis of tetralogy of Fallot and atrial septal defect patients}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01994486}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{moceri:hal-01994483, ADDRESS = {Milan, Italy}, AUTHOR = {Pamela Moceri and Nicolas Duchateau and N Dursent and Xavier Iriart and Sébastien Hascoet and Delphine Baudouy and Emile Ferrari and M Sermesant}, BOOKTITLE = {EuroEcho 2018 - 22nd Annual Congressof the European Association of Cardiovascular Imaging}, OPTEDITOR = {}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Right ventricular remodelling in CHD-PAH patients using 3D speckle tracking}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01994483}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{moceri:hal-01994484, ADDRESS = {Milan, Italy}, AUTHOR = {Pamela Moceri and Nicolas Duchateau and Benjamin Sartre and M Sermesant and Emile Ferrari}, BOOKTITLE = {Euroecho}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Right ventricular function in acute pulmonary embolism: a three-dimensional strain study}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01994484}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{orlhac:hal-01736154, ADDRESS = {Lille, France}, AUTHOR = {Fanny Orlhac and Charles Bouveyron and Thierry Pourcher and Lun Jing and Jean-Marie Guigonis and Jacques Darcourt and Nicholas Ayache and Olivier Humbert}, BOOKTITLE = {2018 - 4èmes Journées Francophones de Médecine Nucléaire}, OPTEDITOR = {}, MONTH = {May}, OPTNOTE = {}, NUMBER = {3}, OPTORGANIZATION = {}, PAGES = {169}, OPTPUBLISHER = {}, SERIES = {Médecine Nucléaire}, TITLE = {Identification des cancers mammaires triple-négatifs : analyse statistique de variables radiomiques issues des images TEP et de variables métabolomiques}, VOLUME = {42}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Analyse de texture, Cancer du sein, Hétérogénéité tumorale, Traitement des images, Triple-négatif}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01736154/file/JFMN_Radio_Metabo_version_HAL.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01736154}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{orlhac:hal-01736147, ADDRESS = {Lille, France}, AUTHOR = {Fanny Orlhac and Olivier Humbert and Sarah Boughdad and Maud Lasserre and Michael Soussan and Christophe Nioche and Nicholas Ayache and Jacques Darcourt and Frédérique Frouin and Irène Buvat}, BOOKTITLE = {2018 - 4èmes Journées Francophones de Médecine Nucléaire}, OPTEDITOR = {}, MONTH = {May}, OPTNOTE = {}, NUMBER = {3}, OPTORGANIZATION = {}, PAGES = {170}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Validation d'une méthode d'harmonisation des mesures SUV et des variables radiomiques pour les études TEP multicentriques rétrospectives}, VOLUME = {42}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Etude multicentrique, Normalisation, Quantification, Analyse de texture, Hétérogénéité tumorale}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01736147/file/JFMN_ComBat_version_HAL.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01736147}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{orlhac:hal-01759334, ADDRESS = {Philadelphia, United States}, AUTHOR = {Fanny Orlhac and Olivier Humbert and Sarah Boughdad and Maud Lasserre and Michael Soussan and Christophe Nioche and Nicholas Ayache and Jacques Darcourt and Frédérique Frouin and Irène Buvat}, BOOKTITLE = {SNMMI Annual Meeting}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {288}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Validation of a harmonization method to correct for SUV and radiomic features variability in multi-center studies}, VOLUME = {59}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01759334/file/Abstract_SNM_ComBat.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01759334}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{orlhac:hal-01736164, ADDRESS = {Nice, France}, AUTHOR = {Fanny Orlhac and Olivier Humbert and Thierry Pourcher and Lun Jing and Jean-Marie Guigonis and Jacques Darcourt and Nicholas Ayache and Charles Bouveyron}, BOOKTITLE = {12ème Conférence Francophone d'Epidémiologie Clinique (EPICLIN) et 25èmes Journées des statisticiens des Centre de Lutte Contre le Cancer (CLCC)}, OPTEDITOR = {}, MONTH = {May}, OPTNOTE = {}, NUMBER = {s3}, OPTORGANIZATION = {}, PAGES = {S180-S181}, OPTPUBLISHER = {}, SERIES = {Revue d'épidémiologie et de santé publique}, TITLE = {Analyse statistique de données radiomiques et métabolomiques : prédiction des lésions mammaires triple-négatives}, VOLUME = {66}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1016/j.respe.2018.03.307}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Métabolomique, Analyse statistique, Analyse discriminante, Sélection de variables, Radiomique}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01736164/file/Abstract_EPICLIN_version_HAL.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01736164}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{orlhac:hal-01759330, ADDRESS = {Philadelphia, United States}, AUTHOR = {Fanny Orlhac and Olivier Humbert and Thierry Pourcher and Lun Jing and Jean-Marie Guigonis and Jacques Darcourt and Nicholas Ayache and Charles Bouveyron}, BOOKTITLE = {SNMMI Annual Meeting}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, NUMBER = {supplement 1}, OPTORGANIZATION = {}, PAGES = {1755}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Statistical analysis of PET radiomic features and metabolomic data: prediction of triple-negative breast cancer}, VOLUME = {59}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://hal.science/hal-01759330/file/Abstract_SNM_Radio_Metabo.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01759330}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{silva:hal-01963637, ADDRESS = {Venice, Italy}, AUTHOR = {Santiago Silva and Boris A Gutman and Eduardo Romero and Paul M. Thompson and Andre Altmann and Marco Lorenzi}, BOOKTITLE = {International Symposium on Biomedical Imaging}, OPTEDITOR = {}, MONTH = {April}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Federated Learning in Distributed Medical Databases: Meta-Analysis of Large-Scale Subcortical Brain Data}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01963637}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{wei:hal-01810822, ADDRESS = {Granada, Spain}, AUTHOR = {Wen Wei and Emilie Poirion and Benedetta Bodini and Stanley Durrleman and Nicholas Ayache and Bruno Stankoff and Olivier Colliot}, BOOKTITLE = {MICCAI 2018 -- 21st International Conference On Medical Image Computing & Computer Assisted Intervention}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Learning Myelin Content in Multiple Sclerosis from Multimodal MRI through Adversarial Training}, VOLUME = {11072}, YEAR = {2018}, OPTABSTRACT = {}, DOI = {10.1007/978-3-030-00931-1_59}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01810822/file/paper.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01810822}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{wei:hal-01723070, ADDRESS = {Paris, France}, AUTHOR = {Wen Wei and Emilie Poirion and Benedetta Bodini and Stanley Durrleman and Olivier Colliot and Bruno Stankoff and Nicholas Ayache}, BOOKTITLE = {ISMRM-ESMRMB 2018 - Joint Annual Meeting}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {1-6}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {FLAIR MR Image Synthesis By Using 3D Fully Convolutional Networks for Multiple Sclerosis}, OPTVOLUME = {}, YEAR = {2018}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01723070/file/ismrm_2018_wen_final.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01723070}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{cedilnik:hal-01498672, ADDRESS = {Toronto, Canada}, AUTHOR = {Nicolas Cedilnik and Josselin Duchateau and Rémi Dubois and Pierre Jaïs and Hubert Cochet and Maxime Sermesant}, BOOKTITLE = {Functional Imaging and Modelling of the Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {271-279}, PUBLISHER = {Springer International Publishing}, SERIES = {Functional Imaging and Modelling of the Heart}, TITLE = {VT Scan: Towards an Efficient Pipeline from Computed Tomography Images to Ventricular Tachycardia Ablation}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-59448-4_26}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Electrophysiological modelling, Heart imaging, Ventricular tachycardia, Catheter ablation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01498672v2/file/vtscan.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01498672}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{devilliers:hal-01481074, ADDRESS = {Boone, United States}, AUTHOR = {Loïc Devilliers and Xavier Pennec and Stéphanie Allassonnière}, BOOKTITLE = {Information Processing in Medical Imaging. IPMI 2017.}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, ORGANIZATION = {Martin Styner and Marc Niethammer and Dinggang Shen and Stephen Aylward and Ipek Oguz and Hongtu Zhu}, PAGES = {16-27}, OPTPUBLISHER = {}, SERIES = {LNCS}, TITLE = {Inconsistency of Template Estimation with the Fréchet mean in Quotient Space}, VOLUME = {10265}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-59050-9_2}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01481074v2/file/IPMIversionHAL.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01481074}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{doste:hal-01533389, ADDRESS = {Toronto, Canada}, AUTHOR = {Rubén Doste and David Soto-Iglesias and Gabriel Bernardino and Rafael Sebastian and Sophie Giffard-Roisin and Rocìo Cabrera-Lozoya and Maxime Sermesant and Antonio Berruezo and Damián Sánchez-Quintana and Oscar Camara}, BOOKTITLE = {Functional imaging and modelling of the heart 2017}, EDITOR = {in Computer Science, Lecture Notes}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, SERIES = {Functional imaging and modelling of the heart 2017 Proceedings}, TITLE = {A Rule-Based Method to Model Myocardial Fiber Orientation for Simulating Ventricular Outflow Tract Arrhythmias}, VOLUME = {10263}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-59448-4_33}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Fiber orientation, Rule-based method, Electrophysiological simulations, Arrhythmias, Outflow tracts}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01533389}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{giffardroisin:hal-01498602, ADDRESS = {Toronto, Canada}, AUTHOR = {Sophie Giffard-Roisin and Hervé Delingette and Thomas Jackson and Lauren Fovargue and Jack Lee and Aldo Rinaldi and Nicholas Ayache and Reza Razavi and Maxime Sermesant}, BOOKTITLE = {Functional imaging and modelling of the heart 2017}, EDITOR = {Mihaela Pop}, MONTH = {June}, NOTE = {Best paper award FIMH 2017, category: Electrophysiology}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {230-238}, PUBLISHER = {Springer International Publishing}, SERIES = {Functional imaging and modelling of the heart 2017}, TITLE = {Sparse Bayesian Non-linear Regression for Multiple Onsets Estimation in Non-invasive Cardiac Electrophysiology}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-59448-4_22}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {ECG Imaging, Cardiac Electrophysiology, Relevance Vector Machine, Personalisation}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01498602/file/FIMH_2017_cameraready.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01498602}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{jia:hal-01574831, ADDRESS = {Toronto, Canada}, AUTHOR = {Shuman Jia and Claudia Camaioni and Marc-Michel Rohé and Pierre Jaïs and Xavier Pennec and Hubert Cochet and Maxime Sermesant}, BOOKTITLE = {FIMH 2017 - International Conference on Functional Imaging and Modeling of the Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {314 - 321}, OPTPUBLISHER = {}, SERIES = {Lecture Notes in Computer Science}, TITLE = {Prediction of Post-Ablation Outcome in Atrial Fibrillation Using Shape Parameterization and Partial Least Squares Regression}, VOLUME = {10263}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-59448-4_30}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {atrial fibrillation, catheter ablation, post-ablation outcome, left atrial remodeling, statistical shape analysis, partial least squares, regression}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01574831/file/FIMH_ShapePLS-1.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01574831}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{krebs:hal-01569447, ADDRESS = {Quebec, Canada}, AUTHOR = {Julian Krebs and Tommaso Mansi and Hervé Delingette and Li Zhang and Florin C Ghesu and Shun Miao and Andreas Maier and Nicholas Ayache and Rui Liao and Ali Kamen}, BOOKTITLE = {Medical Image Computing and Computer Assisted Interventions (MICCAI)}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {344-352}, PUBLISHER = {Springer International Publishing}, SERIES = {Medical Image Computing and Computer Assisted Intervention -- MICCAI 2017}, TITLE = {Robust non-rigid registration through agent-based action learning}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-66182-7_40}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {reinforcement learning, Image registration}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01569447/file/miccai17-2.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01569447}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{lluch:hal-01533371, ADDRESS = {Toronto, Canada}, AUTHOR = {Eric Lluch and Rubén Doste and Sophie Giffard-Roisin and Alexandre This and Maxime Sermesant and Oscar Camara and de Craene, Mathieu and Hernán G Morales}, BOOKTITLE = {FIMH 2017 - 9th International Conference on Functional Imaging and Modelling of the Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {333-343}, PUBLISHER = {Springer International Publishing}, SERIES = {Functional imaging and modelling of the heart 2017 Proceedings}, TITLE = {Smoothed Particle Hydrodynamics for Electrophysiological Modeling: An Alternative to Finite Element Methods}, VOLUME = {141}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-59448-4_32}, OPTISBN = {}, OPTISSN = {}, KEYWORDS = {Meshless, FEM, Cardiac electrophysiology, SPH}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01533371/file/paperFIMH.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01533371}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{marinescu:hal-01843387, ADDRESS = {Boone, United States}, AUTHOR = {R azvan Valentin Marinescu and Arman Esaghi and Marco Lorenzi and Alexandra L. Young and Neil P. Oxtoby and Sara Garbarino and Timothy J. Shakespeare and Sebastian Crutch and Daniel C Alexander}, BOOKTITLE = {International Conference on Information Processing in Medical Imaging (IPMI)}, OPTEDITOR = {}, MONTH = {July}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {A Vertex Clustering Model for Disease Progression: Application to Cortical Thickness Images}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01843387}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{mcleod:hal-01574837, ADDRESS = {Toronto, Canada}, AUTHOR = {Kristin Mcleod and Maxime Sermesant and Xavier Pennec}, BOOKTITLE = {FIMH 2017 - 9th International Conference on Functional Imaging and Modeling of the Heart}, OPTEDITOR = {}, MONTH = {June}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {51 - 59}, PUBLISHER = {Springer}, SERIES = {Lecture Notes in Computer Science}, TITLE = {Improving Understanding of Long-Term Cardiac Functional Remodelling via Cross-Sectional Analysis of Polyaffine Motion Parameters}, VOLUME = {10263}, YEAR = {2017}, OPTABSTRACT = {}, DOI = {10.1007/978-3-319-59448-4_6}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, PDF = {https://inria.hal.science/hal-01574837/file/MeanMotionEvolutionFIMH-1.pdf}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://inria.hal.science/hal-01574837}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{moceri:hal-02161690, ADDRESS = {Paris, France}, AUTHOR = {Pamela Moceri and Nicolas Duchateau and Delphine Baudouy and Elie-Dan Schouver and P Bouvier and S Leroy and P Cerboni and P Gibelin and Maxime Sermesant and Emile Ferrari}, BOOKTITLE = {Journées Européennes de la Société Française de Cardiologie}, OPTEDITOR = {}, OPTMONTH = {}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {Three-dimensional speckle tracking of the right ventricle : implications on survival}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-02161690}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{moceri:hal-01994491, ADDRESS = {Lisbon, Portugal}, AUTHOR = {P Moceri and M Sermesant and D Baudouy and E. Ferrari and Nicolas Duchateau}, BOOKTITLE = {Euroecho-Imaging 2017 - Twenty-First Annual Meeting of the European Association of Echocardiography}, OPTEDITOR = {}, MONTH = {December}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, OPTPAGES = {}, OPTPUBLISHER = {}, OPTSERIES = {}, TITLE = {3D right ventricular strain: comparative analysis of Tetralogy of Fallot and atrial septal defect}, OPTVOLUME = {}, YEAR = {2017}, OPTABSTRACT = {}, OPTDOI = {}, OPTISBN = {}, OPTISSN = {}, OPTKEYWORDS = {}, OPTURL = {}, OPTURL-PUBLISHER = {}, OPTPMID = {}, X-INTERNATIONAL-AUDIENCE = {}, OPTX-INVITED-CONFERENCE = {}, X-PAYS = {}, X-PROCEEDINGS = {}, OPTX-SCIENTIFIC-POPULARIZATION = {}, OPTHAL-DATE-DEPOT = {}, URL-HAL = {https://hal.science/hal-01994491}, OPTX-ID-HAL = {}, OPTHAL-VERSION = {}, X-LANGUAGE = {} } @INPROCEEDINGS{mollero:hal-01569735, ADDRESS = {Québec City, Canada}, AUTHOR = {Roch Molléro and Hervé Delingette and Manasi Datar and Tobias Heimann and Jakob Hauser and Dilveer Panesar and Alexander Jones and Andrew Taylor and Marcus Kelm and Titus Kuehne and Marcello Chinali and Gabriele Rinelli and Nicholas Ayache and Xavier Pennec and Maxime Sermesant}, BOOKTITLE = {Medical Image Computing and Computer Assisted Intervention (MICCAI)}, OPTEDITOR = {}, MONTH = {September}, OPTNOTE = {}, OPTNUMBER = {}, OPTORGANIZATION = {}, PAGES = {350-358}, PUBLISHER = {Springer Interna